2024-02-22T20:03:05,446 Created temporary directory: /tmp/pip-build-tracker-7cfvjm3c
2024-02-22T20:03:05,448 Initialized build tracking at /tmp/pip-build-tracker-7cfvjm3c
2024-02-22T20:03:05,449 Created build tracker: /tmp/pip-build-tracker-7cfvjm3c
2024-02-22T20:03:05,449 Entered build tracker: /tmp/pip-build-tracker-7cfvjm3c
2024-02-22T20:03:05,451 Created temporary directory: /tmp/pip-wheel-u9ewytfm
2024-02-22T20:03:05,454 Created temporary directory: /tmp/pip-ephem-wheel-cache-0b1sx5ht
2024-02-22T20:03:05,480 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-22T20:03:05,483 2 location(s) to search for versions of brainglobe-workflows:
2024-02-22T20:03:05,483 * https://pypi.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,483 * https://www.piwheels.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,484 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,485 Getting page https://pypi.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,487 Found index url https://pypi.org/simple/
2024-02-22T20:03:05,705 Fetched page https://pypi.org/simple/brainglobe-workflows/ as application/vnd.pypi.simple.v1+json
2024-02-22T20:03:05,708   Found link https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.0.0
2024-02-22T20:03:05,709   Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fd/3d/3ba19433653c5f8e4e1fefb3453ff6c6fb161c65970589784ad8d493dfc4/brainglobe_workflows-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,709   Found link https://files.pythonhosted.org/packages/2c/2c/63316da6fb3b7dea22844058c8c2afe92c387a0039f8ed964336584dfd69/brainglobe-workflows-1.1.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.0
2024-02-22T20:03:05,710   Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/d4/e7/ce8124540814aceaad9c50c8976531f4e3d9e648ecedf4f5bfe4646b777a/brainglobe_workflows-1.1.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,711   Found link https://files.pythonhosted.org/packages/db/a3/fe90d65876b53bee6382de11980cd0dc8897c7a39ac9451e1a85063beb46/brainglobe-workflows-1.1.2.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.2
2024-02-22T20:03:05,712   Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/f5/b6/659b4528b8caa5c402c7260961af18f176fecebacc610f812aaf1a792554/brainglobe_workflows-1.1.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,713   Found link https://files.pythonhosted.org/packages/cf/32/2cdab745c05ea15e566d43c878311ee978b9bd9c40ce16c91046c832d795/brainglobe-workflows-1.1.3.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.3
2024-02-22T20:03:05,714   Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fb/fa/b5a1d0706cba1ba5aa0363c3e0ec4458ce02b385f18a4aee8e01e57f968c/brainglobe_workflows-1.1.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,715   Found link https://files.pythonhosted.org/packages/55/fc/f58b0822072d009b33737a7b81ae97515eea4db6f3cef21f63fb3d7b48df/brainglobe-workflows-1.1.4.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.1.4
2024-02-22T20:03:05,716   Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/88/b2/e9c3a4cf60dfc7e00b20b7eba18419acad78c1146aa47475266310d73ae3/brainglobe_workflows-1.1.4-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,716 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,717 Getting page https://www.piwheels.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,718 Found index url https://www.piwheels.org/simple/
2024-02-22T20:03:05,946 Fetched page https://www.piwheels.org/simple/brainglobe-workflows/ as text/html
2024-02-22T20:03:05,948   Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.3-py3-none-any.whl#sha256=4d334ac8e4da3af98e62cf68de8faef80e5bf8d7e115ad7b3bdb881a23552f86 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,949   Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.2-py3-none-any.whl#sha256=1e2349b462dae0287a363ad4f5902deee2ba011f684c751d61fa619803f4cf60 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,950   Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.1.0-py3-none-any.whl#sha256=a51e28508b22a8a3a84fbad104aff0ccf7ec652c7c6a612c7d55b80c3d5d5b31 (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,950   Skipping link: No binaries permitted for brainglobe-workflows: https://www.piwheels.org/simple/brainglobe-workflows/brainglobe_workflows-1.0.0-py3-none-any.whl#sha256=9875e2cf8c7d6256d90d8026fec7102f19d325dd8480202f52100052a04dfcaf (from https://www.piwheels.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2024-02-22T20:03:05,951 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,951 Skipping link: not a file: https://pypi.org/simple/brainglobe-workflows/
2024-02-22T20:03:05,970 Given no hashes to check 1 links for project 'brainglobe-workflows': discarding no candidates
2024-02-22T20:03:05,988 Collecting brainglobe-workflows==1.1.4
2024-02-22T20:03:05,991   Created temporary directory: /tmp/pip-unpack-u8if2j9z
2024-02-22T20:03:06,235   Downloading brainglobe-workflows-1.1.4.tar.gz (30 kB)
2024-02-22T20:03:06,315   Added brainglobe-workflows==1.1.4 from https://files.pythonhosted.org/packages/55/fc/f58b0822072d009b33737a7b81ae97515eea4db6f3cef21f63fb3d7b48df/brainglobe-workflows-1.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-7cfvjm3c'
2024-02-22T20:03:06,323   Created temporary directory: /tmp/pip-build-env-_r896nk7
2024-02-22T20:03:06,328   Installing build dependencies: started
2024-02-22T20:03:06,329   Running command pip subprocess to install build dependencies
2024-02-22T20:03:07,477   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-02-22T20:03:08,001   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-22T20:03:09,695   Collecting setuptools>=45
2024-02-22T20:03:09,709     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.0-py3-none-any.whl (819 kB)
2024-02-22T20:03:09,932   Collecting wheel
2024-02-22T20:03:09,950     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-02-22T20:03:10,224   Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2)
2024-02-22T20:03:10,239     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
2024-02-22T20:03:10,727   Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2)
2024-02-22T20:03:10,742     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-02-22T20:03:10,851   Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2)
2024-02-22T20:03:10,892     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB)
2024-02-22T20:03:13,425   Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm
2024-02-22T20:03:13,648     Creating /tmp/pip-build-env-_r896nk7/overlay/local/bin
2024-02-22T20:03:13,650     changing mode of /tmp/pip-build-env-_r896nk7/overlay/local/bin/wheel to 755
2024-02-22T20:03:17,933   Successfully installed packaging-23.2 setuptools-69.1.0 setuptools_scm-8.0.4 typing-extensions-4.9.0 wheel-0.42.0

2024-02-22T20:03:18,280   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-22T20:03:18,280   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-22T20:03:18,569   Installing build dependencies: finished with status 'done'
2024-02-22T20:03:18,572   Getting requirements to build wheel: started
2024-02-22T20:03:18,573   Running command Getting requirements to build wheel
2024-02-22T20:03:19,496   running egg_info
2024-02-22T20:03:19,501   writing brainglobe_workflows.egg-info/PKG-INFO
2024-02-22T20:03:19,510   writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt
2024-02-22T20:03:19,512   writing entry points to brainglobe_workflows.egg-info/entry_points.txt
2024-02-22T20:03:19,516   writing requirements to brainglobe_workflows.egg-info/requires.txt
2024-02-22T20:03:19,517   writing top-level names to brainglobe_workflows.egg-info/top_level.txt
2024-02-22T20:03:19,554   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-02-22T20:03:19,558   reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:19,560   reading manifest template 'MANIFEST.in'
2024-02-22T20:03:19,561   warning: no previously-included files found matching '.pre-commit-config.yaml'
2024-02-22T20:03:19,562   warning: no previously-included files found matching '*.yaml'
2024-02-22T20:03:19,562   warning: no previously-included files found matching '*.yml'
2024-02-22T20:03:19,563   warning: no previously-included files found matching 'Dockerfile'
2024-02-22T20:03:19,564   warning: no previously-included files found matching '*.ini'
2024-02-22T20:03:19,571   warning: no previously-included files matching '*' found under directory 'benchmarks/results'
2024-02-22T20:03:19,572   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-02-22T20:03:19,573   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-02-22T20:03:19,577   warning: no files found matching '*.pxd' anywhere in distribution
2024-02-22T20:03:19,578   no previously-included directories found matching 'docs'
2024-02-22T20:03:19,578   no previously-included directories found matching 'tests'
2024-02-22T20:03:19,579   no previously-included directories found matching 'resources'
2024-02-22T20:03:19,580   no previously-included directories found matching '.github'
2024-02-22T20:03:19,580   no previously-included directories found matching '.tox'
2024-02-22T20:03:19,581   adding license file 'LICENSE'
2024-02-22T20:03:19,583   writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:19,707   Getting requirements to build wheel: finished with status 'done'
2024-02-22T20:03:19,717   Created temporary directory: /tmp/pip-modern-metadata-nnr1llqa
2024-02-22T20:03:19,720   Preparing metadata (pyproject.toml): started
2024-02-22T20:03:19,722   Running command Preparing metadata (pyproject.toml)
2024-02-22T20:03:20,571   running dist_info
2024-02-22T20:03:20,577   creating /tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info
2024-02-22T20:03:20,582   writing /tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/PKG-INFO
2024-02-22T20:03:20,592   writing dependency_links to /tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/dependency_links.txt
2024-02-22T20:03:20,594   writing entry points to /tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/entry_points.txt
2024-02-22T20:03:20,598   writing requirements to /tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/requires.txt
2024-02-22T20:03:20,599   writing top-level names to /tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/top_level.txt
2024-02-22T20:03:20,601   writing manifest file '/tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:20,637   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-02-22T20:03:20,640   reading manifest file '/tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:20,643   reading manifest template 'MANIFEST.in'
2024-02-22T20:03:20,644   warning: no previously-included files found matching '.pre-commit-config.yaml'
2024-02-22T20:03:20,645   warning: no previously-included files found matching '*.yaml'
2024-02-22T20:03:20,645   warning: no previously-included files found matching '*.yml'
2024-02-22T20:03:20,646   warning: no previously-included files found matching 'Dockerfile'
2024-02-22T20:03:20,646   warning: no previously-included files found matching '*.ini'
2024-02-22T20:03:20,655   warning: no previously-included files matching '*' found under directory 'benchmarks/results'
2024-02-22T20:03:20,656   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-02-22T20:03:20,657   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-02-22T20:03:20,661   warning: no files found matching '*.pxd' anywhere in distribution
2024-02-22T20:03:20,662   no previously-included directories found matching 'docs'
2024-02-22T20:03:20,662   no previously-included directories found matching 'tests'
2024-02-22T20:03:20,663   no previously-included directories found matching 'resources'
2024-02-22T20:03:20,663   no previously-included directories found matching '.github'
2024-02-22T20:03:20,664   no previously-included directories found matching '.tox'
2024-02-22T20:03:20,665   adding license file 'LICENSE'
2024-02-22T20:03:20,666   writing manifest file '/tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:20,667   creating '/tmp/pip-modern-metadata-nnr1llqa/brainglobe_workflows-1.1.4.dist-info'
2024-02-22T20:03:20,835   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-22T20:03:20,841   Source in /tmp/pip-wheel-u9ewytfm/brainglobe-workflows_60bd63202d2a4db89e7475c7521badce has version 1.1.4, which satisfies requirement brainglobe-workflows==1.1.4 from https://files.pythonhosted.org/packages/55/fc/f58b0822072d009b33737a7b81ae97515eea4db6f3cef21f63fb3d7b48df/brainglobe-workflows-1.1.4.tar.gz
2024-02-22T20:03:20,842   Removed brainglobe-workflows==1.1.4 from https://files.pythonhosted.org/packages/55/fc/f58b0822072d009b33737a7b81ae97515eea4db6f3cef21f63fb3d7b48df/brainglobe-workflows-1.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-7cfvjm3c'
2024-02-22T20:03:20,850 Created temporary directory: /tmp/pip-unpack-f47o8bbh
2024-02-22T20:03:20,851 Created temporary directory: /tmp/pip-unpack-t5gnexmz
2024-02-22T20:03:20,911 Building wheels for collected packages: brainglobe-workflows
2024-02-22T20:03:20,915   Created temporary directory: /tmp/pip-wheel-1bnwy99u
2024-02-22T20:03:20,916   Destination directory: /tmp/pip-wheel-1bnwy99u
2024-02-22T20:03:20,918   Building wheel for brainglobe-workflows (pyproject.toml): started
2024-02-22T20:03:20,920   Running command Building wheel for brainglobe-workflows (pyproject.toml)
2024-02-22T20:03:21,738   running bdist_wheel
2024-02-22T20:03:21,761   running build
2024-02-22T20:03:21,762   running build_py
2024-02-22T20:03:21,768   creating build
2024-02-22T20:03:21,768   creating build/lib
2024-02-22T20:03:21,769   creating build/lib/brainglobe_workflows
2024-02-22T20:03:21,771   copying brainglobe_workflows/__init__.py -> build/lib/brainglobe_workflows
2024-02-22T20:03:21,773   copying brainglobe_workflows/utils.py -> build/lib/brainglobe_workflows
2024-02-22T20:03:21,774   running egg_info
2024-02-22T20:03:21,780   writing brainglobe_workflows.egg-info/PKG-INFO
2024-02-22T20:03:21,788   writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt
2024-02-22T20:03:21,790   writing entry points to brainglobe_workflows.egg-info/entry_points.txt
2024-02-22T20:03:21,794   writing requirements to brainglobe_workflows.egg-info/requires.txt
2024-02-22T20:03:21,795   writing top-level names to brainglobe_workflows.egg-info/top_level.txt
2024-02-22T20:03:21,822   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-02-22T20:03:21,825   reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:21,827   reading manifest template 'MANIFEST.in'
2024-02-22T20:03:21,829   warning: no previously-included files found matching '.pre-commit-config.yaml'
2024-02-22T20:03:21,829   warning: no previously-included files found matching '*.yaml'
2024-02-22T20:03:21,830   warning: no previously-included files found matching '*.yml'
2024-02-22T20:03:21,830   warning: no previously-included files found matching 'Dockerfile'
2024-02-22T20:03:21,831   warning: no previously-included files found matching '*.ini'
2024-02-22T20:03:21,840   warning: no previously-included files matching '*' found under directory 'benchmarks/results'
2024-02-22T20:03:21,841   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-02-22T20:03:21,841   warning: no previously-included files matching '*.py[co]' found under directory '*'
2024-02-22T20:03:21,848   warning: no files found matching '*.pxd' anywhere in distribution
2024-02-22T20:03:21,849   no previously-included directories found matching 'docs'
2024-02-22T20:03:21,849   no previously-included directories found matching 'tests'
2024-02-22T20:03:21,850   no previously-included directories found matching 'resources'
2024-02-22T20:03:21,850   no previously-included directories found matching '.github'
2024-02-22T20:03:21,851   no previously-included directories found matching '.tox'
2024-02-22T20:03:21,851   adding license file 'LICENSE'
2024-02-22T20:03:21,853   writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2024-02-22T20:03:21,856   /tmp/pip-build-env-_r896nk7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.brainmapper' is absent from the `packages` configuration.
2024-02-22T20:03:21,856   !!

2024-02-22T20:03:21,857           ********************************************************************************
2024-02-22T20:03:21,858           ############################
2024-02-22T20:03:21,859           # Package would be ignored #
2024-02-22T20:03:21,859           ############################
2024-02-22T20:03:21,860           Python recognizes 'brainglobe_workflows.brainmapper' as an importable package[^1],
2024-02-22T20:03:21,860           but it is absent from setuptools' `packages` configuration.

2024-02-22T20:03:21,861           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-22T20:03:21,862           package, please make sure that 'brainglobe_workflows.brainmapper' is explicitly added
2024-02-22T20:03:21,862           to the `packages` configuration field.

2024-02-22T20:03:21,863           Alternatively, you can also rely on setuptools' discovery methods
2024-02-22T20:03:21,864           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-22T20:03:21,864           instead of `find_packages(...)`/`find:`).

2024-02-22T20:03:21,865           You can read more about "package discovery" on setuptools documentation page:

2024-02-22T20:03:21,866           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-22T20:03:21,867           If you don't want 'brainglobe_workflows.brainmapper' to be distributed and are
2024-02-22T20:03:21,868           already explicitly excluding 'brainglobe_workflows.brainmapper' via
2024-02-22T20:03:21,868           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-22T20:03:21,869           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-22T20:03:21,869           combination with a more fine grained `package-data` configuration.

2024-02-22T20:03:21,870           You can read more about "package data files" on setuptools documentation page:

2024-02-22T20:03:21,871           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-22T20:03:21,873           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-22T20:03:21,873                 even if it does not contain any `.py` files.
2024-02-22T20:03:21,873                 On the other hand, currently there is no concept of package data
2024-02-22T20:03:21,874                 directory, all directories are treated like packages.
2024-02-22T20:03:21,874           ********************************************************************************

2024-02-22T20:03:21,875   !!
2024-02-22T20:03:21,875     check.warn(importable)
2024-02-22T20:03:21,876   /tmp/pip-build-env-_r896nk7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.cellfinder_core' is absent from the `packages` configuration.
2024-02-22T20:03:21,876   !!

2024-02-22T20:03:21,877           ********************************************************************************
2024-02-22T20:03:21,878           ############################
2024-02-22T20:03:21,878           # Package would be ignored #
2024-02-22T20:03:21,879           ############################
2024-02-22T20:03:21,879           Python recognizes 'brainglobe_workflows.cellfinder_core' as an importable package[^1],
2024-02-22T20:03:21,879           but it is absent from setuptools' `packages` configuration.

2024-02-22T20:03:21,880           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-22T20:03:21,881           package, please make sure that 'brainglobe_workflows.cellfinder_core' is explicitly added
2024-02-22T20:03:21,881           to the `packages` configuration field.

2024-02-22T20:03:21,882           Alternatively, you can also rely on setuptools' discovery methods
2024-02-22T20:03:21,883           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-22T20:03:21,883           instead of `find_packages(...)`/`find:`).

2024-02-22T20:03:21,884           You can read more about "package discovery" on setuptools documentation page:

2024-02-22T20:03:21,886           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-22T20:03:21,887           If you don't want 'brainglobe_workflows.cellfinder_core' to be distributed and are
2024-02-22T20:03:21,887           already explicitly excluding 'brainglobe_workflows.cellfinder_core' via
2024-02-22T20:03:21,888           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-22T20:03:21,888           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-22T20:03:21,889           combination with a more fine grained `package-data` configuration.

2024-02-22T20:03:21,890           You can read more about "package data files" on setuptools documentation page:

2024-02-22T20:03:21,891           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-22T20:03:21,893           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-22T20:03:21,893                 even if it does not contain any `.py` files.
2024-02-22T20:03:21,894                 On the other hand, currently there is no concept of package data
2024-02-22T20:03:21,894                 directory, all directories are treated like packages.
2024-02-22T20:03:21,895           ********************************************************************************

2024-02-22T20:03:21,896   !!
2024-02-22T20:03:21,897     check.warn(importable)
2024-02-22T20:03:21,897   /tmp/pip-build-env-_r896nk7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.configs' is absent from the `packages` configuration.
2024-02-22T20:03:21,898   !!

2024-02-22T20:03:21,900           ********************************************************************************
2024-02-22T20:03:21,900           ############################
2024-02-22T20:03:21,900           # Package would be ignored #
2024-02-22T20:03:21,901           ############################
2024-02-22T20:03:21,901           Python recognizes 'brainglobe_workflows.configs' as an importable package[^1],
2024-02-22T20:03:21,901           but it is absent from setuptools' `packages` configuration.

2024-02-22T20:03:21,902           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-22T20:03:21,903           package, please make sure that 'brainglobe_workflows.configs' is explicitly added
2024-02-22T20:03:21,903           to the `packages` configuration field.

2024-02-22T20:03:21,904           Alternatively, you can also rely on setuptools' discovery methods
2024-02-22T20:03:21,905           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-22T20:03:21,905           instead of `find_packages(...)`/`find:`).

2024-02-22T20:03:21,906           You can read more about "package discovery" on setuptools documentation page:

2024-02-22T20:03:21,907           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-22T20:03:21,908           If you don't want 'brainglobe_workflows.configs' to be distributed and are
2024-02-22T20:03:21,908           already explicitly excluding 'brainglobe_workflows.configs' via
2024-02-22T20:03:21,908           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-22T20:03:21,909           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-22T20:03:21,909           combination with a more fine grained `package-data` configuration.

2024-02-22T20:03:21,910           You can read more about "package data files" on setuptools documentation page:

2024-02-22T20:03:21,911           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-22T20:03:21,913           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-22T20:03:21,913                 even if it does not contain any `.py` files.
2024-02-22T20:03:21,914                 On the other hand, currently there is no concept of package data
2024-02-22T20:03:21,914                 directory, all directories are treated like packages.
2024-02-22T20:03:21,915           ********************************************************************************

2024-02-22T20:03:21,916   !!
2024-02-22T20:03:21,917     check.warn(importable)
2024-02-22T20:03:21,917   creating build/lib/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,918   copying brainglobe_workflows/brainmapper/__init__.py -> build/lib/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,918   copying brainglobe_workflows/brainmapper/analyse.py -> build/lib/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,919   copying brainglobe_workflows/brainmapper/main.py -> build/lib/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,919   copying brainglobe_workflows/brainmapper/parser.py -> build/lib/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,920   copying brainglobe_workflows/brainmapper/prep.py -> build/lib/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,920   creating build/lib/brainglobe_workflows/cellfinder_core
2024-02-22T20:03:21,921   copying brainglobe_workflows/cellfinder_core/__init__.py -> build/lib/brainglobe_workflows/cellfinder_core
2024-02-22T20:03:21,921   copying brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/lib/brainglobe_workflows/cellfinder_core
2024-02-22T20:03:21,922   creating build/lib/brainglobe_workflows/configs
2024-02-22T20:03:21,923   copying brainglobe_workflows/configs/cellfinder.json -> build/lib/brainglobe_workflows/configs
2024-02-22T20:03:21,923   installing to build/bdist.linux-armv7l/wheel
2024-02-22T20:03:21,924   running install
2024-02-22T20:03:21,932   running install_lib
2024-02-22T20:03:21,938   creating build/bdist.linux-armv7l
2024-02-22T20:03:21,938   creating build/bdist.linux-armv7l/wheel
2024-02-22T20:03:21,940   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows
2024-02-22T20:03:21,941   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs
2024-02-22T20:03:21,943   copying build/lib/brainglobe_workflows/configs/cellfinder.json -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/configs
2024-02-22T20:03:21,945   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core
2024-02-22T20:03:21,946   copying build/lib/brainglobe_workflows/cellfinder_core/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core
2024-02-22T20:03:21,947   copying build/lib/brainglobe_workflows/cellfinder_core/cellfinder_core.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder_core
2024-02-22T20:03:21,949   copying build/lib/brainglobe_workflows/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows
2024-02-22T20:03:21,951   copying build/lib/brainglobe_workflows/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows
2024-02-22T20:03:21,953   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,954   copying build/lib/brainglobe_workflows/brainmapper/parser.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,957   copying build/lib/brainglobe_workflows/brainmapper/analyse.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,958   copying build/lib/brainglobe_workflows/brainmapper/prep.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,961   copying build/lib/brainglobe_workflows/brainmapper/main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,963   copying build/lib/brainglobe_workflows/brainmapper/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/brainmapper
2024-02-22T20:03:21,964   running install_egg_info
2024-02-22T20:03:21,970   Copying brainglobe_workflows.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.4-py3.11.egg-info
2024-02-22T20:03:21,983   running install_scripts
2024-02-22T20:03:22,005   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.1.4.dist-info/WHEEL
2024-02-22T20:03:22,007   creating '/tmp/pip-wheel-1bnwy99u/.tmp-9xbvzvbf/brainglobe_workflows-1.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-22T20:03:22,009   adding 'brainglobe_workflows/__init__.py'
2024-02-22T20:03:22,011   adding 'brainglobe_workflows/utils.py'
2024-02-22T20:03:22,012   adding 'brainglobe_workflows/brainmapper/__init__.py'
2024-02-22T20:03:22,014   adding 'brainglobe_workflows/brainmapper/analyse.py'
2024-02-22T20:03:22,016   adding 'brainglobe_workflows/brainmapper/main.py'
2024-02-22T20:03:22,018   adding 'brainglobe_workflows/brainmapper/parser.py'
2024-02-22T20:03:22,020   adding 'brainglobe_workflows/brainmapper/prep.py'
2024-02-22T20:03:22,022   adding 'brainglobe_workflows/cellfinder_core/__init__.py'
2024-02-22T20:03:22,024   adding 'brainglobe_workflows/cellfinder_core/cellfinder_core.py'
2024-02-22T20:03:22,026   adding 'brainglobe_workflows/configs/cellfinder.json'
2024-02-22T20:03:22,028   adding 'brainglobe_workflows-1.1.4.dist-info/LICENSE'
2024-02-22T20:03:22,030   adding 'brainglobe_workflows-1.1.4.dist-info/METADATA'
2024-02-22T20:03:22,031   adding 'brainglobe_workflows-1.1.4.dist-info/WHEEL'
2024-02-22T20:03:22,032   adding 'brainglobe_workflows-1.1.4.dist-info/entry_points.txt'
2024-02-22T20:03:22,033   adding 'brainglobe_workflows-1.1.4.dist-info/top_level.txt'
2024-02-22T20:03:22,034   adding 'brainglobe_workflows-1.1.4.dist-info/RECORD'
2024-02-22T20:03:22,035   removing build/bdist.linux-armv7l/wheel
2024-02-22T20:03:22,166   Building wheel for brainglobe-workflows (pyproject.toml): finished with status 'done'
2024-02-22T20:03:22,171   Created wheel for brainglobe-workflows: filename=brainglobe_workflows-1.1.4-py3-none-any.whl size=23370 sha256=a40f137b87cc1cc9a28e64d115e63647f648c9a068336e13ac730697ca7b443b
2024-02-22T20:03:22,173   Stored in directory: /tmp/pip-ephem-wheel-cache-0b1sx5ht/wheels/e5/3e/a7/cef4335653bee23bfe287b295d1d3b6ae0e7624a1db2bba37d
2024-02-22T20:03:22,185 Successfully built brainglobe-workflows
2024-02-22T20:03:22,189 Removed build tracker: '/tmp/pip-build-tracker-7cfvjm3c'