2024-02-26T09:59:54,151 Created temporary directory: /tmp/pip-build-tracker-za6ago9g
2024-02-26T09:59:54,153 Initialized build tracking at /tmp/pip-build-tracker-za6ago9g
2024-02-26T09:59:54,153 Created build tracker: /tmp/pip-build-tracker-za6ago9g
2024-02-26T09:59:54,154 Entered build tracker: /tmp/pip-build-tracker-za6ago9g
2024-02-26T09:59:54,155 Created temporary directory: /tmp/pip-wheel-9vox9vr_
2024-02-26T09:59:54,158 Created temporary directory: /tmp/pip-ephem-wheel-cache-u0h8643u
2024-02-26T09:59:54,186 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T09:59:54,190 2 location(s) to search for versions of moleculekit:
2024-02-26T09:59:54,190 * https://pypi.org/simple/moleculekit/
2024-02-26T09:59:54,190 * https://www.piwheels.org/simple/moleculekit/
2024-02-26T09:59:54,191 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-02-26T09:59:54,191 Getting page https://pypi.org/simple/moleculekit/
2024-02-26T09:59:54,193 Found index url https://pypi.org/simple/
2024-02-26T09:59:54,429 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-02-26T09:59:54,471   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,472   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-02-26T09:59:54,473   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,473   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-02-26T09:59:54,475   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,476   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-02-26T09:59:54,477   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,477   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-02-26T09:59:54,478   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,479   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-02-26T09:59:54,479   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,480   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-02-26T09:59:54,481   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,481   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-02-26T09:59:54,482   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T09:59:54,483   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T09:59:54,484   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,485   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-02-26T09:59:54,485   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,486   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-02-26T09:59:54,486   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,487   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-02-26T09:59:54,488   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,488   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-02-26T09:59:54,489   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,490   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-02-26T09:59:54,490   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,491   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-02-26T09:59:54,492   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,492   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-02-26T09:59:54,493   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,493   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-02-26T09:59:54,494   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,494   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-02-26T09:59:54,495   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,495   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-02-26T09:59:54,496   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,497   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-02-26T09:59:54,497   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,498   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-02-26T09:59:54,498   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T09:59:54,500   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,500   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-02-26T09:59:54,501   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,502   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-02-26T09:59:54,502   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,503   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-02-26T09:59:54,503   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,504   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-02-26T09:59:54,504   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T09:59:54,505   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-02-26T09:59:54,506   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T09:59:54,512   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-02-26T09:59:54,512   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T09:59:54,607   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-02-26T09:59:54,608   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-02-26T09:59:54,608   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-02-26T09:59:54,609   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-02-26T09:59:54,610   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-02-26T09:59:54,611   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-02-26T09:59:54,612   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-02-26T09:59:54,613   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-02-26T09:59:54,614   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-02-26T09:59:54,615   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-02-26T09:59:54,616   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-02-26T09:59:54,616   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-02-26T09:59:54,617   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-02-26T09:59:54,618   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-02-26T09:59:54,619   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-02-26T09:59:54,620   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-02-26T09:59:54,621   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-02-26T09:59:54,621   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-02-26T09:59:54,622   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-02-26T09:59:54,623   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-02-26T09:59:54,624   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-02-26T09:59:54,625   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-02-26T09:59:54,626   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-02-26T09:59:54,627   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-02-26T09:59:54,628   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-02-26T09:59:54,629   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-02-26T09:59:54,630   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-02-26T09:59:54,631   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-02-26T09:59:54,632   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-02-26T09:59:54,632   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-02-26T09:59:54,633   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-02-26T09:59:54,634   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-02-26T09:59:54,635   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-02-26T09:59:54,636 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-02-26T09:59:54,637 Getting page https://www.piwheels.org/simple/moleculekit/
2024-02-26T09:59:54,638 Found index url https://www.piwheels.org/simple/
2024-02-26T09:59:56,423 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-02-26T09:59:56,550   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T09:59:56,552   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T09:59:56,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv6l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv6l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv7l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv6l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv7l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv6l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv7l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp311-cp311-linux_armv6l.whl#sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp311-cp311-linux_armv7l.whl#sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp39-cp39-linux_armv6l.whl#sha256=c52f9eca095400d7d491afc702832a8dbfa71a6a46826bd4d01cd3808f7b3581 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp39-cp39-linux_armv7l.whl#sha256=c52f9eca095400d7d491afc702832a8dbfa71a6a46826bd4d01cd3808f7b3581 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp311-cp311-linux_armv6l.whl#sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp311-cp311-linux_armv7l.whl#sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T09:59:56,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp39-cp39-linux_armv6l.whl#sha256=20842a6d4c7f080f513b9a5e3b6b184036902d470d653a3b8cdd6fefaab51370 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T09:59:56,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp311-cp311-linux_armv6l.whl#sha256=8629ac0797c90996eccc556595395a73f694a991add5f87b742e90afa9657440 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T09:59:56,641   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.8-cp39-cp39-linux_armv7l.whl#sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T09:59:56,643   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.6-cp39-cp39-linux_armv6l.whl#sha256=c81af8eb30e31f41a57d6e31c2e4d4a5a6f85041fe9f79dcd843adf62c919a7a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T09:59:56,644   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,645   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,646   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,646   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,647   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,648   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,649   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,649   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,650   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,651   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,652   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,652   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,654   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,655   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,655   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,656   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,656   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,657   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,658   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,658   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,659   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,660   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,660   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,661   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,661   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,662   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,663   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,663   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,664   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,664   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,665   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,665   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,666   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,667   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,667   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,668   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,669   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,669   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,670   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,671   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,672   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,673   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,673   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,674   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,675   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,676   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,677   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,678   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,679   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,680   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,681   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,682   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,683   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,684   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,685   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,685   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,686   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,687   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,687   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,688   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,689   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,690   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,690   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,691   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,692   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,692   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,693   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,694   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,695   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,695   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,696   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,697   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,698   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,699   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,700   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,702   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,702   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,703   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,704   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,705   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,706   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,707   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,707   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,708   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,709   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,709   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,710   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,710   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,711   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,712   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,712   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,714   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,714   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,716   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,716   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,717   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,718   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,719   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,719   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,720   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,721   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,722   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,722   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,723   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,723   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,724   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,724   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,725   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,726   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,727   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,727   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,728   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,729   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,729   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,730   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,731   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,734   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,735   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,736   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T09:59:56,737   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,737   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,738   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,739   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,740   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,740   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,741   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,741   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,742   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,742   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,743   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,744   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,745   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,746   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,746   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,747   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T09:59:56,748 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-02-26T09:59:56,749 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-02-26T09:59:56,791 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-02-26T09:59:56,810 Collecting moleculekit==1.8.22
2024-02-26T09:59:56,813   Created temporary directory: /tmp/pip-unpack-_zuc12ty
2024-02-26T09:59:57,043   Downloading moleculekit-1.8.22.tar.gz (6.8 MB)
2024-02-26T09:59:59,864   Added moleculekit==1.8.22 from https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz to build tracker '/tmp/pip-build-tracker-za6ago9g'
2024-02-26T09:59:59,872   Created temporary directory: /tmp/pip-build-env-r2em76oq
2024-02-26T09:59:59,876   Installing build dependencies: started
2024-02-26T09:59:59,877   Running command pip subprocess to install build dependencies
2024-02-26T10:00:01,083   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-02-26T10:00:04,467   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T10:00:11,477   Collecting setuptools
2024-02-26T10:00:14,317     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-02-26T10:00:16,383     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:00:16,398     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:00:16,458     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:00:16,574     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:00:16,786     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:00:21,700   Collecting numpy>=1.18.5
2024-02-26T10:00:27,491     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-02-26T10:00:34,780   Collecting Cython>=0.29.21
2024-02-26T10:00:37,370     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.8-cp311-cp311-linux_armv7l.whl (11.7 MB)
2024-02-26T10:00:47,568   Collecting toml
2024-02-26T10:00:50,425     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-02-26T10:00:56,195   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-02-26T10:00:56,697     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-02-26T10:00:59,780   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-02-26T10:00:59,828     Creating /tmp/pip-build-env-r2em76oq/overlay/local/bin
2024-02-26T10:00:59,832     changing mode of /tmp/pip-build-env-r2em76oq/overlay/local/bin/versioneer to 755
2024-02-26T10:01:34,582     changing mode of /tmp/pip-build-env-r2em76oq/overlay/local/bin/f2py to 755
2024-02-26T10:01:40,293     changing mode of /tmp/pip-build-env-r2em76oq/overlay/local/bin/cygdb to 755
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2024-02-26T10:01:40,298     changing mode of /tmp/pip-build-env-r2em76oq/overlay/local/bin/cythonize to 755
2024-02-26T10:01:40,347   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 versioneer-0.28

2024-02-26T10:01:40,645   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-26T10:01:40,646   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-26T10:01:41,075   Installing build dependencies: finished with status 'done'
2024-02-26T10:01:41,078   Getting requirements to build wheel: started
2024-02-26T10:01:41,080   Running command Getting requirements to build wheel
2024-02-26T10:02:16,496   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-02-26T10:02:24,640   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,640   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,641   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,641   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,642   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,642   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,643   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,644   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,644   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,645   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,645   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-02-26T10:02:24,646   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-02-26T10:02:24,646   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-02-26T10:02:24,647   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-02-26T10:02:24,647   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:02:24,648   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
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2024-02-26T10:02:24,955   running egg_info
2024-02-26T10:02:24,961   writing moleculekit.egg-info/PKG-INFO
2024-02-26T10:02:24,965   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T10:02:24,967   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T10:02:24,969   writing top-level names to moleculekit.egg-info/top_level.txt
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2024-02-26T10:02:24,998   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:24,999   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:24,999   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,003   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,004   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,004   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,005   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,006   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,007   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,007   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,008   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,008   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,009   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,010   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,010   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,011   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,015   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,016   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,016   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,018   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,018   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,018   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,019   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,020   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,020   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,022   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,022   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,023   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:25,023   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,025   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,026   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,027   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T10:02:25,038   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:02:25,064   reading manifest template 'MANIFEST.in'
2024-02-26T10:02:25,559   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T10:02:25,561   no previously-included directories found matching 'moleculekit/tests'
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2024-02-26T10:02:25,563   adding license file 'LICENSE'
2024-02-26T10:02:25,594   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:02:27,064   Getting requirements to build wheel: finished with status 'done'
2024-02-26T10:02:27,079   Installing backend dependencies: started
2024-02-26T10:02:27,081   Running command pip subprocess to install backend dependencies
2024-02-26T10:02:28,326   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-02-26T10:02:28,905   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T10:02:32,557   Collecting wheel
2024-02-26T10:02:37,066     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-02-26T10:02:39,602   Installing collected packages: wheel
2024-02-26T10:02:39,835     Creating /tmp/pip-build-env-r2em76oq/normal/local/bin
2024-02-26T10:02:39,837     changing mode of /tmp/pip-build-env-r2em76oq/normal/local/bin/wheel to 755
2024-02-26T10:02:39,849   Successfully installed wheel-0.42.0

2024-02-26T10:02:40,127   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-26T10:02:40,127   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-26T10:02:40,355   Installing backend dependencies: finished with status 'done'
2024-02-26T10:02:40,357   Created temporary directory: /tmp/pip-modern-metadata-2i15cls5
2024-02-26T10:02:40,359   Preparing metadata (pyproject.toml): started
2024-02-26T10:02:40,360   Running command Preparing metadata (pyproject.toml)
2024-02-26T10:02:42,725   running dist_info
2024-02-26T10:02:42,727   creating /tmp/pip-modern-metadata-2i15cls5/moleculekit.egg-info
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2024-02-26T10:02:42,817   reading manifest file '/tmp/pip-modern-metadata-2i15cls5/moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:02:42,817   reading manifest template 'MANIFEST.in'
2024-02-26T10:02:43,137   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T10:02:43,139   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T10:02:43,140   no previously-included directories found matching 'package'
2024-02-26T10:02:43,141   adding license file 'LICENSE'
2024-02-26T10:02:43,160   writing manifest file '/tmp/pip-modern-metadata-2i15cls5/moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:02:43,171   creating '/tmp/pip-modern-metadata-2i15cls5/moleculekit-1.8.22.dist-info'
2024-02-26T10:02:43,413   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-26T10:02:43,418   Source in /tmp/pip-wheel-9vox9vr_/moleculekit_58ceae5f178a4b2290ed092ac1f22516 has version 1.8.22, which satisfies requirement moleculekit==1.8.22 from https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz
2024-02-26T10:02:43,419   Removed moleculekit==1.8.22 from https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz from build tracker '/tmp/pip-build-tracker-za6ago9g'
2024-02-26T10:02:43,425 Created temporary directory: /tmp/pip-unpack-mkst8k_d
2024-02-26T10:02:43,429 Created temporary directory: /tmp/pip-unpack-k_tema7r
2024-02-26T10:02:43,437 Building wheels for collected packages: moleculekit
2024-02-26T10:02:43,442   Created temporary directory: /tmp/pip-wheel-w6nlo1pv
2024-02-26T10:02:43,442   Destination directory: /tmp/pip-wheel-w6nlo1pv
2024-02-26T10:02:43,445   Building wheel for moleculekit (pyproject.toml): started
2024-02-26T10:02:43,446   Running command Building wheel for moleculekit (pyproject.toml)
2024-02-26T10:02:45,701   running bdist_wheel
2024-02-26T10:02:45,716   running build
2024-02-26T10:02:45,717   running build_py
2024-02-26T10:02:45,724   creating build
2024-02-26T10:02:45,724   creating build/lib.linux-armv7l-cpython-311
2024-02-26T10:02:45,726   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,727   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,729   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,731   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,733   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,735   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,739   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,742   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,744   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,747   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,749   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,751   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,752   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,754   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,757   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,760   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,765   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,771   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,780   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,781   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,783   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,785   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:45,789   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,790   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,793   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,795   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,799   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,801   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,803   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,805   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,809   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,812   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,814   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,816   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,819   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,821   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,824   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:02:45,827   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,828   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,831   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,834   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,836   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,839   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,842   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,843   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,845   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,847   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,850   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,853   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,855   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,858   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,860   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,862   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:02:45,865   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:02:45,866   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:02:45,868   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:02:45,872   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:02:45,873   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:02:45,875   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:02:45,878   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:02:45,879   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:02:45,882   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:02:45,883   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:02:45,885   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:02:45,888   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:02:45,891   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:02:45,892   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:02:45,895   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:02:45,904   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:02:45,907   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-02-26T10:02:45,908   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-02-26T10:02:45,910   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,911   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,914   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,916   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,919   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,922   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,927   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:02:45,929   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-02-26T10:02:45,930   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-02-26T10:02:45,932   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-02-26T10:02:45,935   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:02:45,936   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:02:45,938   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:02:45,941   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:02:45,942   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:02:45,945   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:02:45,946   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:02:45,948   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:02:45,951   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:02:45,952   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:02:45,955   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-02-26T10:02:45,955   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-02-26T10:02:45,957   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-02-26T10:02:45,960   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:02:45,961   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:02:45,963   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:02:45,965   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:02:45,967   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:02:45,969   running egg_info
2024-02-26T10:02:45,974   writing moleculekit.egg-info/PKG-INFO
2024-02-26T10:02:45,978   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T10:02:45,979   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T10:02:45,981   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-26T10:02:45,998   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:45,999   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:45,999   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,000   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,001   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,001   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,002   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,003   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,003   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,004   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,005   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,005   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,006   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,007   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,007   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,008   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,009   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,009   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,010   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,010   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,011   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,012   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,012   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,013   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,014   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,014   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,015   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,015   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,016   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,016   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,017   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,017   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,018   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,018   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,019   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,020   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,020   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,021   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,021   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,022   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,022   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,023   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,023   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,024   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,025   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,025   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,026   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,027   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,027   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,028   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,029   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,029   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,030   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,030   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,031   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,032   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,033   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,033   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,034   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,035   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,036   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,037   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,037   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,038   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,039   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,039   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,040   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,040   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,041   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,041   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,042   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,042   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,043   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,044   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,044   dependency /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:02:46,045   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:02:46,045   reading manifest template 'MANIFEST.in'
2024-02-26T10:02:46,723   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T10:02:46,725   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T10:02:46,726   no previously-included directories found matching 'package'
2024-02-26T10:02:46,726   adding license file 'LICENSE'
2024-02-26T10:02:46,746   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:02:46,761   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-02-26T10:02:46,762   !!

2024-02-26T10:02:46,764           ********************************************************************************
2024-02-26T10:02:46,765           ############################
2024-02-26T10:02:46,766           # Package would be ignored #
2024-02-26T10:02:46,766           ############################
2024-02-26T10:02:46,767           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-02-26T10:02:46,768           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,769           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,770           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-02-26T10:02:46,770           to the `packages` configuration field.

2024-02-26T10:02:46,772           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,772           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,773           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,774           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,775           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,777           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-02-26T10:02:46,777           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-02-26T10:02:46,778           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,779           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,779           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,781           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,783           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,785           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,786                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,786                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,787                 directory, all directories are treated like packages.
2024-02-26T10:02:46,788           ********************************************************************************

2024-02-26T10:02:46,789   !!
2024-02-26T10:02:46,790     check.warn(importable)
2024-02-26T10:02:46,791   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-02-26T10:02:46,792   !!

2024-02-26T10:02:46,793           ********************************************************************************
2024-02-26T10:02:46,794           ############################
2024-02-26T10:02:46,795           # Package would be ignored #
2024-02-26T10:02:46,795           ############################
2024-02-26T10:02:46,796           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-02-26T10:02:46,797           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,798           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,799           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-02-26T10:02:46,799           to the `packages` configuration field.

2024-02-26T10:02:46,801           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,802           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,802           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,804           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,805           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,806           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-02-26T10:02:46,807           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-02-26T10:02:46,808           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,808           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,809           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,810           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,811           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,813           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,813                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,814                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,814                 directory, all directories are treated like packages.
2024-02-26T10:02:46,815           ********************************************************************************

2024-02-26T10:02:46,816   !!
2024-02-26T10:02:46,817     check.warn(importable)
2024-02-26T10:02:46,817   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-02-26T10:02:46,818   !!

2024-02-26T10:02:46,819           ********************************************************************************
2024-02-26T10:02:46,820           ############################
2024-02-26T10:02:46,821           # Package would be ignored #
2024-02-26T10:02:46,822           ############################
2024-02-26T10:02:46,822           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-02-26T10:02:46,823           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,824           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,825           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-02-26T10:02:46,826           to the `packages` configuration field.

2024-02-26T10:02:46,827           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,828           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,829           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,830           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,831           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,833           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-02-26T10:02:46,833           already explicitly excluding 'moleculekit.cython_utils' via
2024-02-26T10:02:46,834           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,835           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,836           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,837           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,838           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,839           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,840                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,841                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,841                 directory, all directories are treated like packages.
2024-02-26T10:02:46,842           ********************************************************************************

2024-02-26T10:02:46,843   !!
2024-02-26T10:02:46,843     check.warn(importable)
2024-02-26T10:02:46,844   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-02-26T10:02:46,844   !!

2024-02-26T10:02:46,845           ********************************************************************************
2024-02-26T10:02:46,845           ############################
2024-02-26T10:02:46,845           # Package would be ignored #
2024-02-26T10:02:46,846           ############################
2024-02-26T10:02:46,846           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-02-26T10:02:46,846           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,847           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,847           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-02-26T10:02:46,848           to the `packages` configuration field.

2024-02-26T10:02:46,849           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,849           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,849           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,850           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,851           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,852           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-02-26T10:02:46,853           already explicitly excluding 'moleculekit.distance_utils' via
2024-02-26T10:02:46,853           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,854           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,854           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,855           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,856           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,858           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,858                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,859                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,859                 directory, all directories are treated like packages.
2024-02-26T10:02:46,860           ********************************************************************************

2024-02-26T10:02:46,861   !!
2024-02-26T10:02:46,861     check.warn(importable)
2024-02-26T10:02:46,862   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-02-26T10:02:46,862   !!

2024-02-26T10:02:46,863           ********************************************************************************
2024-02-26T10:02:46,863           ############################
2024-02-26T10:02:46,864           # Package would be ignored #
2024-02-26T10:02:46,864           ############################
2024-02-26T10:02:46,865           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-02-26T10:02:46,865           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,866           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,867           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-02-26T10:02:46,868           to the `packages` configuration field.

2024-02-26T10:02:46,868           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,869           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,869           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,870           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,871           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,871           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-02-26T10:02:46,872           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-02-26T10:02:46,872           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,872           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,873           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,874           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,874           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,875           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,884                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,885                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,885                 directory, all directories are treated like packages.
2024-02-26T10:02:46,886           ********************************************************************************

2024-02-26T10:02:46,887   !!
2024-02-26T10:02:46,888     check.warn(importable)
2024-02-26T10:02:46,888   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-02-26T10:02:46,889   !!

2024-02-26T10:02:46,890           ********************************************************************************
2024-02-26T10:02:46,891           ############################
2024-02-26T10:02:46,891           # Package would be ignored #
2024-02-26T10:02:46,892           ############################
2024-02-26T10:02:46,893           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-02-26T10:02:46,893           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,895           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,895           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-02-26T10:02:46,895           to the `packages` configuration field.

2024-02-26T10:02:46,896           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,897           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,897           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,898           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,899           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,900           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-02-26T10:02:46,901           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-02-26T10:02:46,902           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,902           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,903           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,904           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,905           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,906           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,906                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,906                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,907                 directory, all directories are treated like packages.
2024-02-26T10:02:46,907           ********************************************************************************

2024-02-26T10:02:46,908   !!
2024-02-26T10:02:46,908     check.warn(importable)
2024-02-26T10:02:46,908   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-02-26T10:02:46,909   !!

2024-02-26T10:02:46,910           ********************************************************************************
2024-02-26T10:02:46,910           ############################
2024-02-26T10:02:46,911           # Package would be ignored #
2024-02-26T10:02:46,911           ############################
2024-02-26T10:02:46,912           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-02-26T10:02:46,912           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,913           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,913           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-02-26T10:02:46,914           to the `packages` configuration field.

2024-02-26T10:02:46,914           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,915           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,915           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,916           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,917           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,918           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-02-26T10:02:46,918           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-02-26T10:02:46,919           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,919           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,920           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,920           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,921           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,922           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,923                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,923                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,924                 directory, all directories are treated like packages.
2024-02-26T10:02:46,924           ********************************************************************************

2024-02-26T10:02:46,925   !!
2024-02-26T10:02:46,926     check.warn(importable)
2024-02-26T10:02:46,926   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-02-26T10:02:46,927   !!

2024-02-26T10:02:46,928           ********************************************************************************
2024-02-26T10:02:46,928           ############################
2024-02-26T10:02:46,928           # Package would be ignored #
2024-02-26T10:02:46,929           ############################
2024-02-26T10:02:46,929           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-02-26T10:02:46,929           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,930           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,930           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-02-26T10:02:46,931           to the `packages` configuration field.

2024-02-26T10:02:46,932           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,932           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,932           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,933           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,934           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,934           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-02-26T10:02:46,935           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-02-26T10:02:46,935           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,936           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,936           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,937           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,938           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,939           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,939                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,940                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,940                 directory, all directories are treated like packages.
2024-02-26T10:02:46,941           ********************************************************************************

2024-02-26T10:02:46,942   !!
2024-02-26T10:02:46,942     check.warn(importable)
2024-02-26T10:02:46,942   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-02-26T10:02:46,943   !!

2024-02-26T10:02:46,944           ********************************************************************************
2024-02-26T10:02:46,944           ############################
2024-02-26T10:02:46,945           # Package would be ignored #
2024-02-26T10:02:46,945           ############################
2024-02-26T10:02:46,946           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-02-26T10:02:46,946           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,947           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,947           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-02-26T10:02:46,948           to the `packages` configuration field.

2024-02-26T10:02:46,949           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,949           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,950           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,951           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,952           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,953           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-02-26T10:02:46,953           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-02-26T10:02:46,953           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,954           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,964           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,965           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,966           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,967           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,967                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,968                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,968                 directory, all directories are treated like packages.
2024-02-26T10:02:46,969           ********************************************************************************

2024-02-26T10:02:46,970   !!
2024-02-26T10:02:46,970     check.warn(importable)
2024-02-26T10:02:46,971   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-02-26T10:02:46,971   !!

2024-02-26T10:02:46,972           ********************************************************************************
2024-02-26T10:02:46,972           ############################
2024-02-26T10:02:46,973           # Package would be ignored #
2024-02-26T10:02:46,974           ############################
2024-02-26T10:02:46,976           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-02-26T10:02:46,977           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:46,979           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:46,980           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-02-26T10:02:46,980           to the `packages` configuration field.

2024-02-26T10:02:46,982           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:46,983           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:46,983           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:46,985           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:46,986           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:46,987           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-02-26T10:02:46,987           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-02-26T10:02:46,988           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:46,988           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:46,989           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:46,990           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:46,991           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:46,993           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:46,994                 even if it does not contain any `.py` files.
2024-02-26T10:02:46,995                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:46,996                 directory, all directories are treated like packages.
2024-02-26T10:02:47,006           ********************************************************************************

2024-02-26T10:02:47,023   !!
2024-02-26T10:02:47,024     check.warn(importable)
2024-02-26T10:02:47,024   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-02-26T10:02:47,025   !!

2024-02-26T10:02:47,026           ********************************************************************************
2024-02-26T10:02:47,026           ############################
2024-02-26T10:02:47,027           # Package would be ignored #
2024-02-26T10:02:47,027           ############################
2024-02-26T10:02:47,028           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-02-26T10:02:47,028           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,029           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,030           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-02-26T10:02:47,030           to the `packages` configuration field.

2024-02-26T10:02:47,031           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,035           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,035           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,036           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,041           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,046           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-02-26T10:02:47,049           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-02-26T10:02:47,058           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,060           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,060           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,061           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,062           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,064           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,064                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,065                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,065                 directory, all directories are treated like packages.
2024-02-26T10:02:47,066           ********************************************************************************

2024-02-26T10:02:47,068   !!
2024-02-26T10:02:47,068     check.warn(importable)
2024-02-26T10:02:47,069   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-02-26T10:02:47,070   !!

2024-02-26T10:02:47,072           ********************************************************************************
2024-02-26T10:02:47,075           ############################
2024-02-26T10:02:47,087           # Package would be ignored #
2024-02-26T10:02:47,094           ############################
2024-02-26T10:02:47,095           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-02-26T10:02:47,095           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,096           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,097           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-02-26T10:02:47,097           to the `packages` configuration field.

2024-02-26T10:02:47,098           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,099           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,099           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,100           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,101           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,101           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-02-26T10:02:47,102           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-02-26T10:02:47,102           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,103           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,103           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,104           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,105           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,110           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,117                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,143                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,145                 directory, all directories are treated like packages.
2024-02-26T10:02:47,145           ********************************************************************************

2024-02-26T10:02:47,146   !!
2024-02-26T10:02:47,147     check.warn(importable)
2024-02-26T10:02:47,147   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-02-26T10:02:47,148   !!

2024-02-26T10:02:47,149           ********************************************************************************
2024-02-26T10:02:47,150           ############################
2024-02-26T10:02:47,150           # Package would be ignored #
2024-02-26T10:02:47,151           ############################
2024-02-26T10:02:47,151           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-02-26T10:02:47,152           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,153           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,154           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-02-26T10:02:47,154           to the `packages` configuration field.

2024-02-26T10:02:47,155           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,156           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,157           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,162           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,187           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,189           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-02-26T10:02:47,189           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-02-26T10:02:47,190           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,190           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,191           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,192           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,193           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,195           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,195                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,196                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,196                 directory, all directories are treated like packages.
2024-02-26T10:02:47,196           ********************************************************************************

2024-02-26T10:02:47,197   !!
2024-02-26T10:02:47,198     check.warn(importable)
2024-02-26T10:02:47,198   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-02-26T10:02:47,199   !!

2024-02-26T10:02:47,200           ********************************************************************************
2024-02-26T10:02:47,200           ############################
2024-02-26T10:02:47,200           # Package would be ignored #
2024-02-26T10:02:47,201           ############################
2024-02-26T10:02:47,201           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-02-26T10:02:47,202           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,203           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,204           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-02-26T10:02:47,204           to the `packages` configuration field.

2024-02-26T10:02:47,206           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,206           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,207           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,208           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,209           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,210           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-02-26T10:02:47,211           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-02-26T10:02:47,212           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,212           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,213           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,214           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,215           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,226           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,227                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,227                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,228                 directory, all directories are treated like packages.
2024-02-26T10:02:47,228           ********************************************************************************

2024-02-26T10:02:47,230   !!
2024-02-26T10:02:47,231     check.warn(importable)
2024-02-26T10:02:47,231   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-02-26T10:02:47,232   !!

2024-02-26T10:02:47,234           ********************************************************************************
2024-02-26T10:02:47,234           ############################
2024-02-26T10:02:47,234           # Package would be ignored #
2024-02-26T10:02:47,235           ############################
2024-02-26T10:02:47,235           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-02-26T10:02:47,236           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,237           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,238           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-02-26T10:02:47,238           to the `packages` configuration field.

2024-02-26T10:02:47,240           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,240           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,240           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,242           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,243           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,243           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-02-26T10:02:47,244           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-02-26T10:02:47,244           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,245           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,246           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,247           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,248           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,251           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,252                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,252                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,253                 directory, all directories are treated like packages.
2024-02-26T10:02:47,254           ********************************************************************************

2024-02-26T10:02:47,256   !!
2024-02-26T10:02:47,257     check.warn(importable)
2024-02-26T10:02:47,258   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-02-26T10:02:47,259   !!

2024-02-26T10:02:47,262           ********************************************************************************
2024-02-26T10:02:47,273           ############################
2024-02-26T10:02:47,299           # Package would be ignored #
2024-02-26T10:02:47,321           ############################
2024-02-26T10:02:47,343           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-02-26T10:02:47,364           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,416           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,443           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-02-26T10:02:47,444           to the `packages` configuration field.

2024-02-26T10:02:47,445           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,446           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,446           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,447           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,449           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,450           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-02-26T10:02:47,450           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-02-26T10:02:47,451           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,452           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,452           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,454           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,455           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,456           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,457                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,457                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,458                 directory, all directories are treated like packages.
2024-02-26T10:02:47,459           ********************************************************************************

2024-02-26T10:02:47,460   !!
2024-02-26T10:02:47,460     check.warn(importable)
2024-02-26T10:02:47,461   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-02-26T10:02:47,461   !!

2024-02-26T10:02:47,462           ********************************************************************************
2024-02-26T10:02:47,463           ############################
2024-02-26T10:02:47,464           # Package would be ignored #
2024-02-26T10:02:47,464           ############################
2024-02-26T10:02:47,465           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-02-26T10:02:47,465           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,466           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,467           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-02-26T10:02:47,468           to the `packages` configuration field.

2024-02-26T10:02:47,469           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,469           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,470           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,471           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,472           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,474           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-02-26T10:02:47,474           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-02-26T10:02:47,475           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,475           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,476           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,477           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,478           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,480           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,480                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,481                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,481                 directory, all directories are treated like packages.
2024-02-26T10:02:47,482           ********************************************************************************

2024-02-26T10:02:47,484   !!
2024-02-26T10:02:47,484     check.warn(importable)
2024-02-26T10:02:47,485   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-02-26T10:02:47,485   !!

2024-02-26T10:02:47,486           ********************************************************************************
2024-02-26T10:02:47,487           ############################
2024-02-26T10:02:47,487           # Package would be ignored #
2024-02-26T10:02:47,488           ############################
2024-02-26T10:02:47,488           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-02-26T10:02:47,489           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,490           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,491           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-02-26T10:02:47,491           to the `packages` configuration field.

2024-02-26T10:02:47,493           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,493           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,494           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,495           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,496           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,497           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-02-26T10:02:47,497           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-02-26T10:02:47,498           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,498           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,499           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,500           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,501           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,502           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,502                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,503                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,503                 directory, all directories are treated like packages.
2024-02-26T10:02:47,504           ********************************************************************************

2024-02-26T10:02:47,505   !!
2024-02-26T10:02:47,505     check.warn(importable)
2024-02-26T10:02:47,506   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-02-26T10:02:47,506   !!

2024-02-26T10:02:47,507           ********************************************************************************
2024-02-26T10:02:47,508           ############################
2024-02-26T10:02:47,508           # Package would be ignored #
2024-02-26T10:02:47,509           ############################
2024-02-26T10:02:47,509           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-02-26T10:02:47,510           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,511           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,511           package, please make sure that 'moleculekit.share' is explicitly added
2024-02-26T10:02:47,512           to the `packages` configuration field.

2024-02-26T10:02:47,513           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,513           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,514           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,515           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,515           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,516           If you don't want 'moleculekit.share' to be distributed and are
2024-02-26T10:02:47,517           already explicitly excluding 'moleculekit.share' via
2024-02-26T10:02:47,517           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,517           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,518           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,519           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,520           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,521           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,521                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,522                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,522                 directory, all directories are treated like packages.
2024-02-26T10:02:47,523           ********************************************************************************

2024-02-26T10:02:47,524   !!
2024-02-26T10:02:47,524     check.warn(importable)
2024-02-26T10:02:47,524   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-02-26T10:02:47,525   !!

2024-02-26T10:02:47,526           ********************************************************************************
2024-02-26T10:02:47,526           ############################
2024-02-26T10:02:47,527           # Package would be ignored #
2024-02-26T10:02:47,527           ############################
2024-02-26T10:02:47,528           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-02-26T10:02:47,528           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,529           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,530           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-02-26T10:02:47,530           to the `packages` configuration field.

2024-02-26T10:02:47,531           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,532           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,532           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,533           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,534           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,535           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-02-26T10:02:47,536           already explicitly excluding 'moleculekit.share.atomselect' via
2024-02-26T10:02:47,536           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,537           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,537           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,538           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,539           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,541           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,541                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,542                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,542                 directory, all directories are treated like packages.
2024-02-26T10:02:47,543           ********************************************************************************

2024-02-26T10:02:47,544   !!
2024-02-26T10:02:47,544     check.warn(importable)
2024-02-26T10:02:47,545   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-02-26T10:02:47,545   !!

2024-02-26T10:02:47,546           ********************************************************************************
2024-02-26T10:02:47,547           ############################
2024-02-26T10:02:47,547           # Package would be ignored #
2024-02-26T10:02:47,548           ############################
2024-02-26T10:02:47,549           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-02-26T10:02:47,549           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,550           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,551           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-02-26T10:02:47,551           to the `packages` configuration field.

2024-02-26T10:02:47,552           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,553           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,554           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,555           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,556           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,557           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-02-26T10:02:47,558           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-02-26T10:02:47,559           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,559           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,560           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,561           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,562           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,564           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,565                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,565                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,566                 directory, all directories are treated like packages.
2024-02-26T10:02:47,566           ********************************************************************************

2024-02-26T10:02:47,568   !!
2024-02-26T10:02:47,568     check.warn(importable)
2024-02-26T10:02:47,569   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-02-26T10:02:47,570   !!

2024-02-26T10:02:47,571           ********************************************************************************
2024-02-26T10:02:47,571           ############################
2024-02-26T10:02:47,572           # Package would be ignored #
2024-02-26T10:02:47,573           ############################
2024-02-26T10:02:47,573           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-02-26T10:02:47,574           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,575           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,576           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-02-26T10:02:47,576           to the `packages` configuration field.

2024-02-26T10:02:47,577           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,578           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,578           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,579           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,581           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,582           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-02-26T10:02:47,582           already explicitly excluding 'moleculekit.tmalign' via
2024-02-26T10:02:47,583           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,583           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,584           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,585           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,586           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,588           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,588                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,589                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,590                 directory, all directories are treated like packages.
2024-02-26T10:02:47,590           ********************************************************************************

2024-02-26T10:02:47,591   !!
2024-02-26T10:02:47,592     check.warn(importable)
2024-02-26T10:02:47,593   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-02-26T10:02:47,593   !!

2024-02-26T10:02:47,594           ********************************************************************************
2024-02-26T10:02:47,595           ############################
2024-02-26T10:02:47,596           # Package would be ignored #
2024-02-26T10:02:47,596           ############################
2024-02-26T10:02:47,597           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-02-26T10:02:47,598           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,599           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,599           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-02-26T10:02:47,600           to the `packages` configuration field.

2024-02-26T10:02:47,601           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,602           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,603           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,604           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,605           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,607           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-02-26T10:02:47,607           already explicitly excluding 'moleculekit.tmalign.include' via
2024-02-26T10:02:47,608           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,608           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,609           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,610           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,611           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,612           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,613                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,613                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,614                 directory, all directories are treated like packages.
2024-02-26T10:02:47,615           ********************************************************************************

2024-02-26T10:02:47,616   !!
2024-02-26T10:02:47,616     check.warn(importable)
2024-02-26T10:02:47,617   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-02-26T10:02:47,617   !!

2024-02-26T10:02:47,618           ********************************************************************************
2024-02-26T10:02:47,619           ############################
2024-02-26T10:02:47,620           # Package would be ignored #
2024-02-26T10:02:47,620           ############################
2024-02-26T10:02:47,621           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-02-26T10:02:47,621           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,623           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,623           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-02-26T10:02:47,624           to the `packages` configuration field.

2024-02-26T10:02:47,625           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,626           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,626           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,627           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,629           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,630           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-02-26T10:02:47,631           already explicitly excluding 'moleculekit.tmalign.src' via
2024-02-26T10:02:47,631           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,632           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,633           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,634           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,635           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,637           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,638                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,638                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,639                 directory, all directories are treated like packages.
2024-02-26T10:02:47,639           ********************************************************************************

2024-02-26T10:02:47,641   !!
2024-02-26T10:02:47,641     check.warn(importable)
2024-02-26T10:02:47,642   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-02-26T10:02:47,642   !!

2024-02-26T10:02:47,643           ********************************************************************************
2024-02-26T10:02:47,643           ############################
2024-02-26T10:02:47,644           # Package would be ignored #
2024-02-26T10:02:47,644           ############################
2024-02-26T10:02:47,644           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-02-26T10:02:47,645           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:02:47,646           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:02:47,646           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-02-26T10:02:47,647           to the `packages` configuration field.

2024-02-26T10:02:47,648           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:02:47,648           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:02:47,649           instead of `find_packages(...)`/`find:`).

2024-02-26T10:02:47,650           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:02:47,651           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:02:47,652           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-02-26T10:02:47,652           already explicitly excluding 'moleculekit.wrapping' via
2024-02-26T10:02:47,653           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:02:47,653           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:02:47,654           combination with a more fine grained `package-data` configuration.

2024-02-26T10:02:47,655           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:02:47,656           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:02:47,657           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:02:47,658                 even if it does not contain any `.py` files.
2024-02-26T10:02:47,658                 On the other hand, currently there is no concept of package data
2024-02-26T10:02:47,659                 directory, all directories are treated like packages.
2024-02-26T10:02:47,659           ********************************************************************************

2024-02-26T10:02:47,660   !!
2024-02-26T10:02:47,661     check.warn(importable)
2024-02-26T10:02:47,661   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:47,662   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:47,662   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:02:47,663   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:02:47,663   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:02:47,664   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:02:47,664   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:02:47,665   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:02:47,666   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:02:47,666   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:02:47,667   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:02:47,667   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:02:47,668   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:02:47,668   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:02:47,669   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:02:47,669   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:02:47,670   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:02:47,670   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:02:47,671   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:02:47,671   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:02:47,672   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:02:47,672   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-02-26T10:02:47,673   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-02-26T10:02:47,673   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-02-26T10:02:47,674   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,674   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,675   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,675   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,676   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,676   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,677   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,677   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,677   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,678   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,678   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,679   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,679   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,680   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,680   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,681   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,681   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,682   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,682   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,683   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,683   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,684   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,684   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,684   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,685   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,685   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,686   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,686   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,687   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,687   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,688   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,688   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,689   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,689   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,690   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,690   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,691   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,691   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,692   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,693   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,693   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,694   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,694   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,695   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,695   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,696   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,696   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,696   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,697   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,697   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,698   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,698   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,698   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,699   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,699   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,700   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,700   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,701   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,701   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,702   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,702   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,703   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,703   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,704   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,704   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,705   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,705   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,706   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,706   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,707   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,707   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,708   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,708   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,709   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,709   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,710   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,710   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,711   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,711   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,711   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,712   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,712   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,713   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,713   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,714   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,714   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,715   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,715   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,716   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,716   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,717   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,717   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,718   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,718   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,720   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,722   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,725   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,727   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,729   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,731   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,734   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,736   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,739   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,741   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,745   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,747   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,749   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,751   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,754   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,756   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,758   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,760   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,762   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,764   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,766   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,768   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,771   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,773   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,775   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,777   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,780   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,782   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,784   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,786   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,788   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,791   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,793   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,795   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,797   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,799   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,802   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,804   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,806   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,808   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,811   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,813   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,815   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,817   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,819   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,821   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,823   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,825   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,828   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,830   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,832   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,834   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,837   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,839   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,841   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,843   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,845   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,847   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,849   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,851   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,854   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,856   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,858   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,860   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,863   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,865   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,867   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,870   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,872   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,874   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,876   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,878   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,880   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,882   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,884   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,887   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,889   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,891   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,893   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,896   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,898   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,900   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:02:47,902   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:02:47,903   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:02:47,927   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:02:47,929   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:02:47,931   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-02-26T10:02:47,932   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-02-26T10:02:47,934   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-02-26T10:02:47,935   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-02-26T10:02:47,941   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:02:47,942   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:02:47,969   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:02:47,971   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:02:47,972   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:02:48,002   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:02:48,004   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:02:48,005   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:02:48,038   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:02:48,040   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:02:48,041   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:02:48,078   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:02:48,080   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:02:48,081   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:02:48,113   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:02:48,116   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:02:48,117   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:02:48,145   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:02:48,147   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:02:48,149   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:02:48,150   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:02:48,152   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:02:48,155   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:02:48,158   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-02-26T10:02:48,159   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-02-26T10:02:48,162   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:02:48,164   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:02:48,187   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:02:48,191   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:02:48,193   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:02:48,194   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:02:48,197   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:02:48,200   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:02:48,203   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:02:48,206   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:02:48,211   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-02-26T10:02:48,212   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-02-26T10:02:48,216   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,218   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,246   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,249   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,251   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,253   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,288   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,290   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:02:48,292   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,293   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,296   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,298   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,301   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,303   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,305   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:02:48,307   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:02:48,308   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:02:48,311   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:02:48,314   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:02:48,317   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:02:48,320   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:02:48,331   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-02-26T10:02:48,332   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.22'
2024-02-26T10:02:48,332   running build_ext
2024-02-26T10:02:48,342   building 'moleculekit.interactions.hbonds' extension
2024-02-26T10:02:48,343   creating build/temp.linux-armv7l-cpython-311
2024-02-26T10:02:48,344   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:02:48,344   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:02:48,345   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:02:48,346   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-02-26T10:02:48,704   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:02:48,704                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:02:48,705                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:02:48,705                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-02-26T10:02:48,706   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:02:48,706      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:02:48,707         |  ^~~~~~~
2024-02-26T10:03:16,183   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-02-26T10:03:16,183       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19971:68:
2024-02-26T10:03:16,184   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:03:16,185   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-02-26T10:03:16,186         |                                                    ^~~~~~~~~~~~~~~
2024-02-26T10:03:16,186   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-26T10:03:16,187   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-02-26T10:03:16,188   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-02-26T10:03:16,188         |                                                         ^~~~~~~~~~~~~~~
2024-02-26T10:03:19,336   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:03:19,632   building 'moleculekit.interactions.pipi' extension
2024-02-26T10:03:19,632   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:03:19,633   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-02-26T10:03:19,981   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:03:19,981                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:03:19,982                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:03:19,982                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-02-26T10:03:19,983   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:03:19,983      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:03:19,984         |  ^~~~~~~
2024-02-26T10:03:52,997   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:03:53,293   building 'moleculekit.interactions.cationpi' extension
2024-02-26T10:03:53,294   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:03:53,294   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-02-26T10:03:53,604   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:03:53,604                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:03:53,605                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:03:53,606                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-02-26T10:03:53,606   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:03:53,607      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:03:53,607         |  ^~~~~~~
2024-02-26T10:04:26,065   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:04:26,362   building 'moleculekit.interactions.sigmahole' extension
2024-02-26T10:04:26,363   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:04:26,363   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-02-26T10:04:26,673   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:04:26,674                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:04:26,674                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:04:26,674                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-02-26T10:04:26,675   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:04:26,675      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:04:26,676         |  ^~~~~~~
2024-02-26T10:04:58,797   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:04:59,104   building 'moleculekit.wrapping' extension
2024-02-26T10:04:59,105   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:04:59,105   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-02-26T10:04:59,433   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:04:59,434                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:04:59,434                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:04:59,435                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-02-26T10:04:59,435   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:04:59,436      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:04:59,437         |  ^~~~~~~
2024-02-26T10:05:29,873   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:05:30,233   building 'moleculekit.bondguesser_utils' extension
2024-02-26T10:05:30,234   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:05:30,241   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-02-26T10:05:30,664   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:05:30,665                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:05:30,670                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:05:30,670                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-02-26T10:05:30,671   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:05:30,671      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:05:30,672         |  ^~~~~~~
2024-02-26T10:05:32,994   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-02-26T10:05:33,238   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T10:05:33,240   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-02-26T10:05:33,241         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T10:05:33,242   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T10:05:33,242   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-02-26T10:05:33,243         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T10:05:33,244   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T10:05:33,245   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-02-26T10:05:33,266         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T10:05:33,266   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,267   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:05:33,268         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,269   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,273   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:05:33,274         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,275   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,276   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,276         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,277   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,278   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:05:33,279         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,280   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,280   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:05:33,281         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,305   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,306   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:05:33,307         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,308   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,308   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,309         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,310   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,329   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:05:33,330         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,337   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,338   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,339         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,340   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,341   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:05:33,341         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,342   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,345   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,353         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,361   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,365   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,366         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,367   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,367   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:05:33,368         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,369   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,373   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:05:33,377         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,378   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,379   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,380         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,380   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,381   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:05:33,382         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,382   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,383   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,384         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,384   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,385   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:05:33,385         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,386   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,387   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,387         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,393   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:05:33,401   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:05:33,402         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,403   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-02-26T10:05:33,404   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:05:33,404   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-02-26T10:05:33,405         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-02-26T10:05:33,406   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:05:33,407   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-02-26T10:05:33,407         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T10:05:59,686   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:05:59,963   building 'moleculekit.atomselect_utils' extension
2024-02-26T10:05:59,964   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:05:59,964   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-02-26T10:06:00,274   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:06:00,275                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:06:00,275                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:06:00,276                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-02-26T10:06:00,276   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:06:00,277      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:06:00,277         |  ^~~~~~~
2024-02-26T10:06:04,710   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-02-26T10:06:04,711   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:06:04,712   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-02-26T10:06:04,712         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T10:06:04,720   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T10:06:04,720   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:06:04,721   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T10:06:04,722         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:06:04,729   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T10:06:04,730   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:06:04,731   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T10:06:04,732         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:06:39,075   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:06:39,377   building 'moleculekit.distance_utils' extension
2024-02-26T10:06:39,377   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:06:39,378   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-02-26T10:06:39,692   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:06:39,693                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:06:39,693                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:06:39,694                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-02-26T10:06:39,694   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:06:39,695      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:06:39,695         |  ^~~~~~~
2024-02-26T10:07:18,307   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:07:18,608   building 'moleculekit.occupancy_utils' extension
2024-02-26T10:07:18,609   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:07:18,610   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-02-26T10:07:18,926   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:07:18,927                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:07:18,927                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:07:18,928                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-02-26T10:07:18,929   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:07:18,930      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:07:18,930         |  ^~~~~~~
2024-02-26T10:07:46,348   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:07:46,546   building 'moleculekit.cython_utils' extension
2024-02-26T10:07:46,547   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:07:46,548   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-02-26T10:07:46,886   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:07:46,886                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:07:46,887                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:07:46,887                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-02-26T10:07:46,888   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:07:46,888      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:07:46,889         |  ^~~~~~~
2024-02-26T10:08:16,941   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:08:17,245   building 'moleculekit.xtc' extension
2024-02-26T10:08:17,246   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:08:17,247   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:08:17,249   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:08:17,251   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T10:08:17,928   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,929      66 |         "OK",
2024-02-26T10:08:17,929         |         ^~~~
2024-02-26T10:08:17,930   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,931      67 |         "Header",
2024-02-26T10:08:17,932         |         ^~~~~~~~
2024-02-26T10:08:17,933   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,934      68 |         "String",
2024-02-26T10:08:17,934         |         ^~~~~~~~
2024-02-26T10:08:17,935   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,936      69 |         "Double",
2024-02-26T10:08:17,936         |         ^~~~~~~~
2024-02-26T10:08:17,937   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,937      70 |         "Integer",
2024-02-26T10:08:17,938         |         ^~~~~~~~~
2024-02-26T10:08:17,939   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,939      71 |         "Float",
2024-02-26T10:08:17,940         |         ^~~~~~~
2024-02-26T10:08:17,940   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,941      72 |         "Unsigned integer",
2024-02-26T10:08:17,942         |         ^~~~~~~~~~~~~~~~~~
2024-02-26T10:08:17,942   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,943      73 |         "Compressed 3D coordinate",
2024-02-26T10:08:17,943         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:17,944   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,945      74 |         "Closing file",
2024-02-26T10:08:17,945         |         ^~~~~~~~~~~~~~
2024-02-26T10:08:17,946   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,947      75 |         "Magic number",
2024-02-26T10:08:17,947         |         ^~~~~~~~~~~~~~
2024-02-26T10:08:17,948   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,949      76 |         "Not enough memory",
2024-02-26T10:08:17,950         |         ^~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:17,951   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,951      77 |         "End of file",
2024-02-26T10:08:17,952         |         ^~~~~~~~~~~~~
2024-02-26T10:08:17,953   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:17,953      78 |         "File not found"
2024-02-26T10:08:17,954         |         ^~~~~~~~~~~~~~~~
2024-02-26T10:08:17,955   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T10:08:17,955   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,956     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T10:08:17,957         |            ~~~~~^~~~~~
2024-02-26T10:08:17,957   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T10:08:17,958   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:17,959     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T10:08:17,960         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:08:17,960   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T10:08:17,961   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,962     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T10:08:17,963         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:17,963   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,964     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-02-26T10:08:17,964         |                             ~~^~~~~~~~~~~~~~
2024-02-26T10:08:17,965   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,965     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T10:08:17,966         |                             ~~^~~~~~~~~~~~~~~~
2024-02-26T10:08:17,966   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T10:08:17,967   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:17,967     664 |                 if (lastbits < num_of_bits)
2024-02-26T10:08:17,968         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T10:08:17,968   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T10:08:17,969   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:17,970     785 |         if(size3>xfp->buf1size)
2024-02-26T10:08:17,971         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:17,971   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:17,972     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:17,973         |                          ^
2024-02-26T10:08:17,974   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,974     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:17,975         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:17,976   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,977     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:17,978         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:17,979   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,980     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:17,980         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:17,981   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,982     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:17,983         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:17,984   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,985     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:17,986         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:17,986   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,987     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:17,987         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:17,988   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:17,988     756 |         int smallidx,  minidx, maxidx;
2024-02-26T10:08:17,989         |                        ^~~~~~
2024-02-26T10:08:17,990   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:17,990     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:08:17,991         |                                ^~~~~~
2024-02-26T10:08:17,991   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:08:17,992     763 |         int errval=1;
2024-02-26T10:08:17,992         |             ^~~~~~
2024-02-26T10:08:17,993   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T10:08:17,993   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:17,994    1011 |         if(size3>xfp->buf1size)
2024-02-26T10:08:17,995         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:17,995   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,996    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:08:17,997         |                                 ~~~~~~~~^~~~~~~
2024-02-26T10:08:17,998   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:17,998    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:08:17,999         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:08:18,000   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:18,000    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:08:18,001         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:08:18,001   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:18,002    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T10:08:18,003         |                         ^
2024-02-26T10:08:18,003   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:18,004    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:18,005         |                          ^
2024-02-26T10:08:18,005   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:18,006    1275 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:08:18,007         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:18,008   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:18,009    1001 |         int errval;
2024-02-26T10:08:18,009         |             ^~~~~~
2024-02-26T10:08:18,010   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T10:08:18,011   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:18,011    1316 |         if(size3>xfp->buf1size)
2024-02-26T10:08:18,012         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:18,012   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:18,013    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:18,013         |                          ^
2024-02-26T10:08:18,014   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:18,014    1289 |         int smallidx,  maxidx, minidx;
2024-02-26T10:08:18,015         |                                ^~~~~~
2024-02-26T10:08:18,016   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:18,016    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:08:18,017         |                                ^~~~~~
2024-02-26T10:08:18,017   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:08:18,018    1297 |         int errval=1;
2024-02-26T10:08:18,018         |             ^~~~~~
2024-02-26T10:08:18,019   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T10:08:18,020   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:18,021    1513 |         if(size3>xfp->buf1size) {
2024-02-26T10:08:18,021         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:18,022   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:18,023    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T10:08:18,024         |                         ^
2024-02-26T10:08:18,024   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:18,025    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:18,026         |                          ^
2024-02-26T10:08:18,027   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:18,027    1743 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:08:18,028         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:18,029   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:18,029    1504 |         int errval=1;
2024-02-26T10:08:18,030         |             ^~~~~~
2024-02-26T10:08:20,878   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-02-26T10:08:21,168   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-02-26T10:08:21,936   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-02-26T10:08:21,937   moleculekit/fileformats/xtc/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:21,937     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T10:08:21,938         |                                ~~~~~^~~~~~~~
2024-02-26T10:08:21,938   moleculekit/fileformats/xtc/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T10:08:21,939     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-02-26T10:08:21,940         |             ^~~
2024-02-26T10:08:21,947   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-02-26T10:08:21,948   moleculekit/fileformats/xtc/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T10:08:21,948     418 |         int nf3 = nframes * 3;
2024-02-26T10:08:21,949         |             ^~~
2024-02-26T10:08:21,951   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-02-26T10:08:21,951   moleculekit/fileformats/xtc/src/xtc.cpp:548:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:21,952     548 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T10:08:21,953         |                                        ~~~~~^~~~~~~~
2024-02-26T10:08:21,955   moleculekit/fileformats/xtc/src/xtc.cpp:617:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:21,956     617 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T10:08:21,956         |                                        ~~~~~^~~~~~~~
2024-02-26T10:08:21,957   moleculekit/fileformats/xtc/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-02-26T10:08:21,958     491 |         int reading_index = 0;
2024-02-26T10:08:21,959         |             ^~~~~~~~~~~~~
2024-02-26T10:08:21,959   moleculekit/fileformats/xtc/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-02-26T10:08:21,960     492 |         int writing_index = 0;
2024-02-26T10:08:21,961         |             ^~~~~~~~~~~~~
2024-02-26T10:08:22,909   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-02-26T10:08:23,234   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:08:23,235                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:08:23,236                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:08:23,237                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-02-26T10:08:23,237   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:08:23,238      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:08:23,238         |  ^~~~~~~
2024-02-26T10:08:47,442   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:08:47,741   building 'moleculekit.trr' extension
2024-02-26T10:08:47,742   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-02-26T10:08:47,855   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T10:08:48,523   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,524      66 |         "OK",
2024-02-26T10:08:48,525         |         ^~~~
2024-02-26T10:08:48,526   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,527      67 |         "Header",
2024-02-26T10:08:48,527         |         ^~~~~~~~
2024-02-26T10:08:48,528   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,529      68 |         "String",
2024-02-26T10:08:48,529         |         ^~~~~~~~
2024-02-26T10:08:48,530   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,531      69 |         "Double",
2024-02-26T10:08:48,531         |         ^~~~~~~~
2024-02-26T10:08:48,532   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,533      70 |         "Integer",
2024-02-26T10:08:48,534         |         ^~~~~~~~~
2024-02-26T10:08:48,535   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,535      71 |         "Float",
2024-02-26T10:08:48,536         |         ^~~~~~~
2024-02-26T10:08:48,537   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,538      72 |         "Unsigned integer",
2024-02-26T10:08:48,539         |         ^~~~~~~~~~~~~~~~~~
2024-02-26T10:08:48,539   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,540      73 |         "Compressed 3D coordinate",
2024-02-26T10:08:48,540         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:48,541   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,542      74 |         "Closing file",
2024-02-26T10:08:48,542         |         ^~~~~~~~~~~~~~
2024-02-26T10:08:48,543   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,543      75 |         "Magic number",
2024-02-26T10:08:48,544         |         ^~~~~~~~~~~~~~
2024-02-26T10:08:48,544   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,545      76 |         "Not enough memory",
2024-02-26T10:08:48,545         |         ^~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:48,546   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,546      77 |         "End of file",
2024-02-26T10:08:48,547         |         ^~~~~~~~~~~~~
2024-02-26T10:08:48,548   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:08:48,548      78 |         "File not found"
2024-02-26T10:08:48,549         |         ^~~~~~~~~~~~~~~~
2024-02-26T10:08:48,550   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T10:08:48,550   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,551     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T10:08:48,552         |            ~~~~~^~~~~~
2024-02-26T10:08:48,552   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T10:08:48,553   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,554     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T10:08:48,555         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:08:48,556   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T10:08:48,556   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,557     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T10:08:48,558         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:48,558   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,559     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-02-26T10:08:48,560         |                             ~~^~~~~~~~~~~~~~
2024-02-26T10:08:48,560   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,561     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T10:08:48,562         |                             ~~^~~~~~~~~~~~~~~~
2024-02-26T10:08:48,562   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T10:08:48,563   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,564     664 |                 if (lastbits < num_of_bits)
2024-02-26T10:08:48,565         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T10:08:48,565   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T10:08:48,566   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,566     785 |         if(size3>xfp->buf1size)
2024-02-26T10:08:48,567         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:48,567   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,568     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:48,568         |                          ^
2024-02-26T10:08:48,569   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,570     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:48,570         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:48,571   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,571     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:48,572         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:48,572   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,573     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:48,574         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:48,574   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,575     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:48,575         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:48,576   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,577     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:48,578         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:48,578   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,579     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:08:48,580         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:08:48,580   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:48,581     756 |         int smallidx,  minidx, maxidx;
2024-02-26T10:08:48,582         |                        ^~~~~~
2024-02-26T10:08:48,582   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:48,583     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:08:48,584         |                                ^~~~~~
2024-02-26T10:08:48,585   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:08:48,586     763 |         int errval=1;
2024-02-26T10:08:48,586         |             ^~~~~~
2024-02-26T10:08:48,587   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T10:08:48,587   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,588    1011 |         if(size3>xfp->buf1size)
2024-02-26T10:08:48,588         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:48,589   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,589    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:08:48,590         |                                 ~~~~~~~~^~~~~~~
2024-02-26T10:08:48,590   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,591    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:08:48,591         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:08:48,592   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,592    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:08:48,593         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:08:48,594   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,595    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T10:08:48,595         |                         ^
2024-02-26T10:08:48,596   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,597    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:48,598         |                          ^
2024-02-26T10:08:48,598   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,599    1275 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:08:48,600         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:48,600   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:48,601    1001 |         int errval;
2024-02-26T10:08:48,602         |             ^~~~~~
2024-02-26T10:08:48,602   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T10:08:48,603   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,604    1316 |         if(size3>xfp->buf1size)
2024-02-26T10:08:48,605         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:48,605   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,606    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:48,607         |                          ^
2024-02-26T10:08:48,608   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:48,608    1289 |         int smallidx,  maxidx, minidx;
2024-02-26T10:08:48,609         |                                ^~~~~~
2024-02-26T10:08:48,610   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:48,610    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:08:48,611         |                                ^~~~~~
2024-02-26T10:08:48,611   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:08:48,612    1297 |         int errval=1;
2024-02-26T10:08:48,612         |             ^~~~~~
2024-02-26T10:08:48,613   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T10:08:48,614   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,614    1513 |         if(size3>xfp->buf1size) {
2024-02-26T10:08:48,615         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:08:48,615   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,616    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T10:08:48,616         |                         ^
2024-02-26T10:08:48,617   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:08:48,618    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:08:48,618         |                          ^
2024-02-26T10:08:48,621   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:08:48,622    1743 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:08:48,622         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:08:48,623   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:08:48,623    1504 |         int errval=1;
2024-02-26T10:08:48,624         |             ^~~~~~
2024-02-26T10:08:51,476   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-02-26T10:08:51,578   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-02-26T10:08:51,579   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T10:08:51,580     111 |         if (slen != strlen(version)+1)
2024-02-26T10:08:51,580         |                  ^~
2024-02-26T10:08:51,581   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T10:08:51,582     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-02-26T10:08:51,582         |                                              ^~
2024-02-26T10:08:52,292   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-02-26T10:08:52,684   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:08:52,686                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:08:52,686                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:08:52,687                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-02-26T10:08:52,687   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:08:52,688      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:08:52,688         |  ^~~~~~~
2024-02-26T10:08:53,470   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-02-26T10:08:53,486   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-02-26T10:08:53,486   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-02-26T10:08:53,487         |                                     ^~
2024-02-26T10:09:16,949   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-02-26T10:09:16,949   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:16,950    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T10:09:16,951         |                                        ^~~~~~~~~~~~~~~
2024-02-26T10:09:16,964   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T10:09:16,965   14242 |   int __pyx_v_status;
2024-02-26T10:09:16,966         |       ^~~~~~~~~~~~~~
2024-02-26T10:09:28,663   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-02-26T10:09:28,675   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,676   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T10:09:28,676         |                   ^
2024-02-26T10:09:28,685   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-02-26T10:09:28,686   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:09:28,686         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,696   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,697   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:09:28,698         |                   ^
2024-02-26T10:09:28,707   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-02-26T10:09:28,707   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:09:28,708         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,709   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,709    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T10:09:28,710         |                                                                                               ^
2024-02-26T10:09:28,719   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-02-26T10:09:28,719   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:09:28,720         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,730   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,730   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-02-26T10:09:28,731         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:09:28,740   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-02-26T10:09:28,741   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:09:28,741         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,751   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,751   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T10:09:28,752         |                   ^
2024-02-26T10:09:28,761   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-02-26T10:09:28,762   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:09:28,762         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,772   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,773   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:09:28,773         |                   ^
2024-02-26T10:09:28,782   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-02-26T10:09:28,783   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:09:28,783         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,784   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,785    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T10:09:28,785         |                                                                                               ^
2024-02-26T10:09:28,794   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-02-26T10:09:28,795   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:09:28,796         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,806   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,806   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-02-26T10:09:28,807         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:09:28,816   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-02-26T10:09:28,816   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:09:28,817         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,827   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,828   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:09:28,829         |                 ^
2024-02-26T10:09:28,838   moleculekit/fileformats/xtc/trr.c:10095:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-02-26T10:09:28,838   10095 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-02-26T10:09:28,839         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,849   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,850   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T10:09:28,850         |                 ^
2024-02-26T10:09:28,859   moleculekit/fileformats/xtc/trr.c:10095:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-02-26T10:09:28,860   10095 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-02-26T10:09:28,860         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,870   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,871   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:09:28,871         |                   ^
2024-02-26T10:09:28,881   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-02-26T10:09:28,881   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-02-26T10:09:28,882         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,892   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,893   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T10:09:28,893         |                   ^
2024-02-26T10:09:28,903   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-02-26T10:09:28,904   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-02-26T10:09:28,904         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,915   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,916   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:09:28,916         |                   ^
2024-02-26T10:09:28,925   moleculekit/fileformats/xtc/trr.c:10075:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-02-26T10:09:28,926   10075 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-02-26T10:09:28,926         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:28,937   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:28,937   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T10:09:28,938         |                   ^
2024-02-26T10:09:28,947   moleculekit/fileformats/xtc/trr.c:10075:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-02-26T10:09:28,948   10075 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-02-26T10:09:28,948         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:09:35,715   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:09:36,111   building 'moleculekit.dcd' extension
2024-02-26T10:09:36,112   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:09:36,112   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-02-26T10:09:36,113   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-02-26T10:09:36,546   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:09:36,547                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:09:36,547                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:09:36,548                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-02-26T10:09:36,548   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:09:36,549      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:09:36,549         |  ^~~~~~~
2024-02-26T10:09:37,835   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-02-26T10:09:37,836                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-02-26T10:09:37,836   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,837     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T10:09:37,838         |            ^~~~~~~~~~~~~
2024-02-26T10:09:37,839   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,839     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T10:09:37,840         |            ^~~~~~~~~~~~~~
2024-02-26T10:09:37,841   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,841     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-02-26T10:09:37,842         |            ^~~~~~~~~~~~~~~
2024-02-26T10:09:37,843   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,843     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-02-26T10:09:37,844         |                   ^~~~~~~~~
2024-02-26T10:09:37,845   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,846     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-02-26T10:09:37,847         |                   ^~~~~~~~~
2024-02-26T10:09:37,848   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,848     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-02-26T10:09:37,849         |                   ^~~~~~~~~
2024-02-26T10:09:37,850   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,851     394 | static int fio_fclose(fio_fd fd) {
2024-02-26T10:09:37,851         |            ^~~~~~~~~~
2024-02-26T10:09:37,852   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-02-26T10:09:37,852     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-02-26T10:09:37,853         |            ^~~~~~~~
2024-02-26T10:09:52,298   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-02-26T10:09:52,299   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:09:52,299    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T10:09:52,300         |                                        ^~~~~~~~~~~~~~~
2024-02-26T10:09:52,306   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T10:09:52,307    8004 |   int __pyx_v_i;
2024-02-26T10:09:52,307         |       ^~~~~~~~~
2024-02-26T10:09:55,693   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-02-26T10:09:55,913   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-02-26T10:09:55,913   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:09:55,914     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T10:09:55,915         |                                                       ^~
2024-02-26T10:09:55,915   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:09:55,916     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T10:09:55,917         |                                                      ^~
2024-02-26T10:09:55,917   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:09:55,918     194 |     if (input_integer[0] != dcdcordmagic)
2024-02-26T10:09:55,918         |                          ^~
2024-02-26T10:09:55,919   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:09:55,920     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T10:09:55,920         |                                               ^~
2024-02-26T10:09:55,921   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:09:55,922     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T10:09:55,922         |                                               ^~
2024-02-26T10:09:55,925   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-02-26T10:09:55,926   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:09:55,927     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-02-26T10:09:55,927         |                       ^~
2024-02-26T10:09:55,928   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:09:55,928     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-02-26T10:09:55,929         |                                                 ^~
2024-02-26T10:09:55,955   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-02-26T10:09:55,956   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-02-26T10:09:55,956   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-02-26T10:09:55,957      96 | static void swap2_aligned(void *v, long ndata) {
2024-02-26T10:09:55,957         |             ^~~~~~~~~~~~~
2024-02-26T10:09:55,958   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-02-26T10:09:55,958      32 | static void swap2_unaligned(void *v, long ndata) {
2024-02-26T10:09:55,959         |             ^~~~~~~~~~~~~~~
2024-02-26T10:09:55,959   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-02-26T10:09:55,960   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T10:09:55,960     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T10:09:55,961         |            ^~~~~~~~~~~~~
2024-02-26T10:09:55,961   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T10:09:55,962     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T10:09:55,963         |            ^~~~~~~~~~~~~~
2024-02-26T10:09:57,260   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:09:57,398   building 'moleculekit.binpos' extension
2024-02-26T10:09:57,400   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:09:57,401   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-02-26T10:09:57,402   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-02-26T10:09:57,818   In file included from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:09:57,818                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:09:57,819                    from /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:09:57,819                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-02-26T10:09:57,820   /tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:09:57,820      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:09:57,821         |  ^~~~~~~
2024-02-26T10:10:12,437   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-02-26T10:10:12,438       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7486:13:
2024-02-26T10:10:12,446   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:10:12,447    8027 |   if (__pyx_t_1) {
2024-02-26T10:10:12,447         |      ^
2024-02-26T10:10:12,448   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-02-26T10:10:12,454   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T10:10:12,454    7504 |   int __pyx_v_status;
2024-02-26T10:10:12,455         |       ^~~~~~~~~~~~~~
2024-02-26T10:10:12,456   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:10:12,456    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T10:10:12,457         |                                        ^~~~~~~~~~~~~~~
2024-02-26T10:10:12,463   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T10:10:12,464    7501 |   int __pyx_v_i;
2024-02-26T10:10:12,464         |       ^~~~~~~~~
2024-02-26T10:10:15,992   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-02-26T10:10:16,326   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:10:16,456   building 'moleculekit.tmalign' extension
2024-02-26T10:10:16,457   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:10:16,458   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-02-26T10:10:16,459   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-02-26T10:10:50,528   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-r2em76oq/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-02-26T10:11:13,089   In file included from /usr/include/c++/12/vector:70,
2024-02-26T10:11:13,089                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-26T10:11:13,090   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-02-26T10:11:13,091   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-02-26T10:11:13,092     439 |       vector<_Tp, _Alloc>::
2024-02-26T10:11:13,092         |       ^~~~~~~~~~~~~~~~~~~
2024-02-26T10:11:13,895   In file included from /usr/include/c++/12/vector:64:
2024-02-26T10:11:13,896   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-02-26T10:11:13,897       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20761:32,
2024-02-26T10:11:13,897       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-02-26T10:11:13,898   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T10:11:13,898    1287 |           _M_realloc_insert(end(), __x);
2024-02-26T10:11:13,899         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:11:13,900   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-02-26T10:11:13,900       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20775:33,
2024-02-26T10:11:13,901       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-02-26T10:11:13,902   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T10:11:13,902    1287 |           _M_realloc_insert(end(), __x);
2024-02-26T10:11:13,903         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:11:13,903   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-02-26T10:11:13,904       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20860:34,
2024-02-26T10:11:13,905       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-02-26T10:11:13,906   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T10:11:13,907    1287 |           _M_realloc_insert(end(), __x);
2024-02-26T10:11:13,907         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:11:16,322   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:11:16,727   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-02-26T10:11:16,728   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.22'
2024-02-26T10:11:16,729   installing to build/bdist.linux-armv7l/wheel
2024-02-26T10:11:16,729   running install
2024-02-26T10:11:16,753   running install_lib
2024-02-26T10:11:16,759   creating build/bdist.linux-armv7l
2024-02-26T10:11:16,760   creating build/bdist.linux-armv7l/wheel
2024-02-26T10:11:16,763   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:16,766   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T10:11:16,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T10:11:16,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T10:11:16,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:16,819   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:11:16,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:11:17,133   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-02-26T10:11:17,137   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,138   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,140   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,142   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,144   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,149   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,157   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,158   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,161   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,167   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,168   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,170   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,172   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,174   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,178   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,180   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,181   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,183   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,185   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,189   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,192   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,194   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,198   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,200   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,202   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,204   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,210   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,211   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,213   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,215   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,217   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,219   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,221   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,223   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,225   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,227   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,229   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,232   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,234   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,239   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,246   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,249   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,251   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,253   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,256   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,260   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,262   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,264   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,269   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,273   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,275   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,280   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,283   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,285   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,287   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,289   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,292   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,298   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,300   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,303   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,305   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,309   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,320   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,324   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,326   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,329   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,338   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,340   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,342   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,344   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,349   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,351   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,353   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,355   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,361   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,362   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,369   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,371   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,373   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,377   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,382   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,385   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,387   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,392   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,394   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,396   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,398   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,401   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,405   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,406   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,414   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,418   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,421   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,428   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,433   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,435   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,437   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,440   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,445   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,448   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,450   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,452   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,453   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,455   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,457   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,459   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,461   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,465   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,467   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,470   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,472   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,476   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,478   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:11:17,482   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T10:11:17,483   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T10:11:17,486   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:11:17,488   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:11:17,490   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,492   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,541   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,626   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T10:11:17,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T10:11:17,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T10:11:17,673   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,707   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,740   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,817   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T10:11:17,819   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T10:11:17,863   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T10:11:17,866   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:17,905   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T10:11:17,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T10:11:17,946   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T10:11:17,951   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,953   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T10:11:17,954   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T10:11:17,957   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T10:11:17,959   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,962   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,964   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,971   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,973   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,975   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,981   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,984   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,986   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,995   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:11:17,998   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,003   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,006   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,008   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,010   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,012   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,030   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,032   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,037   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,038   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,045   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,049   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,056   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,062   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,065   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,070   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,073   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,076   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,079   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:11:18,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,143   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T10:11:18,144   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T10:11:18,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T10:11:18,168   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,171   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:11:18,172   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T10:11:18,173   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T10:11:18,179   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:11:18,201   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T10:11:18,202   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T10:11:18,204   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:11:18,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:11:18,209   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:18,211   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:18,213   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T10:11:18,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T10:11:18,234   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T10:11:18,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:18,239   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T10:11:18,239   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T10:11:18,242   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T10:11:18,269   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T10:11:18,270   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T10:11:18,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T10:11:20,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:20,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:20,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:20,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:20,887   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T10:11:20,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T10:11:20,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T10:11:20,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:11:20,938   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:20,941   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:11:20,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:11:20,944   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:11:20,947   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:11:20,948   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:11:20,951   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:20,955   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:20,957   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:11:20,959   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:20,960   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:20,962   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:11:20,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:11:20,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:11:20,969   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:11:20,970   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:11:20,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:11:20,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:20,977   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,977   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,979   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,981   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,984   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,986   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,988   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:11:20,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:20,991   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:21,016   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:21,019   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:21,021   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:11:21,050   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:11:21,052   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T10:11:21,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T10:11:21,056   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:11:21,059   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:11:21,060   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:11:21,062   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:11:21,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:11:21,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:11:21,068   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:11:21,071   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:11:21,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:11:21,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:11:21,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:11:21,096   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:11:21,097   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T10:11:21,098   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T10:11:21,101   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:11:21,102   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:11:21,104   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:11:21,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:11:21,109   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:11:21,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:11:21,128   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:11:21,130   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:11:21,132   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T10:11:21,133   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T10:11:21,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T10:11:21,156   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:21,158   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:11:21,160   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:11:21,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:11:21,171   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:11:21,173   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T10:11:21,175   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:11:21,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:11:21,180   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:11:21,183   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:11:21,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:11:21,188   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:11:21,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:11:21,192   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:11:21,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:11:21,197   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:11:21,200   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T10:11:21,201   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T10:11:21,203   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T10:11:21,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T10:11:21,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:21,210   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:21,214   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,215   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,219   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:11:21,220   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:11:21,223   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:11:21,226   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:11:21,228   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:11:21,230   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,232   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,235   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,238   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:11:21,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:11:21,273   running install_egg_info
2024-02-26T10:11:21,278   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.22-py3.11.egg-info
2024-02-26T10:11:21,292   running install_scripts
2024-02-26T10:11:21,346   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.22.dist-info/WHEEL
2024-02-26T10:11:21,349   creating '/tmp/pip-wheel-w6nlo1pv/.tmp-_ukdbrer/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-26T10:11:21,352   adding 'moleculekit/__init__.py'
2024-02-26T10:11:21,353   adding 'moleculekit/_version.py'
2024-02-26T10:11:21,355   adding 'moleculekit/align.py'
2024-02-26T10:11:21,675   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:21,833   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:21,839   adding 'moleculekit/bondguesser.py'
2024-02-26T10:11:22,081   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:22,090   adding 'moleculekit/config.py'
2024-02-26T10:11:22,349   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:22,510   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:22,516   adding 'moleculekit/dihedral.py'
2024-02-26T10:11:22,517   adding 'moleculekit/distance.py'
2024-02-26T10:11:22,827   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:22,838   adding 'moleculekit/home.py'
2024-02-26T10:11:22,839   adding 'moleculekit/logging.ini'
2024-02-26T10:11:22,853   adding 'moleculekit/molecule.py'
2024-02-26T10:11:23,081   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:23,089   adding 'moleculekit/opm.py'
2024-02-26T10:11:23,092   adding 'moleculekit/periodictable.py'
2024-02-26T10:11:23,093   adding 'moleculekit/pymolgraphics.py'
2024-02-26T10:11:23,094   adding 'moleculekit/rcsb.py'
2024-02-26T10:11:23,096   adding 'moleculekit/rdkitintegration.py'
2024-02-26T10:11:23,109   adding 'moleculekit/readers.py'
2024-02-26T10:11:23,704   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:24,006   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:24,018   adding 'moleculekit/util.py'
2024-02-26T10:11:24,019   adding 'moleculekit/version.py'
2024-02-26T10:11:24,021   adding 'moleculekit/viewer.py'
2024-02-26T10:11:24,022   adding 'moleculekit/vmd_wrapper'
2024-02-26T10:11:24,024   adding 'moleculekit/vmdgraphics.py'
2024-02-26T10:11:24,026   adding 'moleculekit/vmdviewer.py'
2024-02-26T10:11:24,279   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:24,293   adding 'moleculekit/writers.py'
2024-02-26T10:11:24,552   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:24,561   adding 'moleculekit/atomselect/__init__.py'
2024-02-26T10:11:24,563   adding 'moleculekit/atomselect/analyze.py'
2024-02-26T10:11:24,565   adding 'moleculekit/atomselect/atomselect.py'
2024-02-26T10:11:24,567   adding 'moleculekit/atomselect/languageparser.py'
2024-02-26T10:11:24,669   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-02-26T10:11:24,681   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-02-26T10:11:24,771   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-02-26T10:11:24,780   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-02-26T10:11:24,868   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-02-26T10:11:24,876   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-02-26T10:11:24,976   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-02-26T10:11:24,986   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-02-26T10:11:24,988   adding 'moleculekit/fileformats/__init__.py'
2024-02-26T10:11:24,993   adding 'moleculekit/fileformats/netcdf.py'
2024-02-26T10:11:24,995   adding 'moleculekit/fileformats/utils.py'
2024-02-26T10:11:25,055   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-02-26T10:11:25,062   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-02-26T10:11:25,063   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-02-26T10:11:25,065   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-02-26T10:11:25,066   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-02-26T10:11:25,072   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-02-26T10:11:25,074   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-02-26T10:11:25,139   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-02-26T10:11:25,147   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-02-26T10:11:25,149   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-02-26T10:11:25,150   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-02-26T10:11:25,152   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-02-26T10:11:25,154   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-02-26T10:11:25,155   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-02-26T10:11:25,160   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-02-26T10:11:25,165   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-02-26T10:11:25,259   adding 'moleculekit/fileformats/xtc/trr.c'
2024-02-26T10:11:25,270   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-02-26T10:11:25,272   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-02-26T10:11:25,273   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-02-26T10:11:25,361   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-02-26T10:11:25,370   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-02-26T10:11:25,371   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-02-26T10:11:25,373   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-02-26T10:11:25,374   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-02-26T10:11:25,377   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-02-26T10:11:25,378   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-02-26T10:11:25,380   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-02-26T10:11:25,381   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-02-26T10:11:25,383   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-02-26T10:11:25,389   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-02-26T10:11:25,392   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-02-26T10:11:25,393   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-02-26T10:11:25,396   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-02-26T10:11:25,397   adding 'moleculekit/interactions/__init__.py'
2024-02-26T10:11:25,676   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:25,941   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:25,952   adding 'moleculekit/interactions/interactions.py'
2024-02-26T10:11:26,229   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:26,514   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:11:26,614   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-02-26T10:11:26,623   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-02-26T10:11:26,713   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-02-26T10:11:26,722   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-02-26T10:11:26,812   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-02-26T10:11:26,821   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-02-26T10:11:26,930   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-02-26T10:11:26,939   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-02-26T10:11:27,025   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-02-26T10:11:27,034   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-02-26T10:11:27,035   adding 'moleculekit/pdbx/__init__.py'
2024-02-26T10:11:27,039   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-02-26T10:11:27,041   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-02-26T10:11:27,044   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-02-26T10:11:27,045   adding 'moleculekit/pdbx/reader/__init__.py'
2024-02-26T10:11:27,047   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-02-26T10:11:27,048   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-02-26T10:11:27,049   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-02-26T10:11:27,051   adding 'moleculekit/pdbx/tests/__init__.py'
2024-02-26T10:11:27,053   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-02-26T10:11:27,054   adding 'moleculekit/pdbx/writer/__init__.py'
2024-02-26T10:11:27,056   adding 'moleculekit/ply/__init__.py'
2024-02-26T10:11:27,060   adding 'moleculekit/ply/lex.py'
2024-02-26T10:11:27,071   adding 'moleculekit/ply/yacc.py'
2024-02-26T10:11:27,074   adding 'moleculekit/projections/__init__.py'
2024-02-26T10:11:27,076   adding 'moleculekit/projections/metriccoordinate.py'
2024-02-26T10:11:27,080   adding 'moleculekit/projections/metricdihedral.py'
2024-02-26T10:11:27,083   adding 'moleculekit/projections/metricdistance.py'
2024-02-26T10:11:27,085   adding 'moleculekit/projections/metricfluctuation.py'
2024-02-26T10:11:27,087   adding 'moleculekit/projections/metricgyration.py'
2024-02-26T10:11:27,091   adding 'moleculekit/projections/metricplumed2.py'
2024-02-26T10:11:27,092   adding 'moleculekit/projections/metricrmsd.py'
2024-02-26T10:11:27,095   adding 'moleculekit/projections/metricsasa.py'
2024-02-26T10:11:27,096   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-02-26T10:11:27,098   adding 'moleculekit/projections/metricshell.py'
2024-02-26T10:11:27,100   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-02-26T10:11:27,102   adding 'moleculekit/projections/metrictmscore.py'
2024-02-26T10:11:27,103   adding 'moleculekit/projections/projection.py'
2024-02-26T10:11:27,105   adding 'moleculekit/projections/util.py'
2024-02-26T10:11:27,107   adding 'moleculekit/share/ALA.cif'
2024-02-26T10:11:27,108   adding 'moleculekit/share/backbone.cif'
2024-02-26T10:11:28,407   adding 'moleculekit/share/opm_sequences.json'
2024-02-26T10:11:28,492   adding 'moleculekit/share/atomselect/atomselect.json'
2024-02-26T10:11:28,497   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-02-26T10:11:28,498   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-02-26T10:11:28,499   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-02-26T10:11:28,500   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-02-26T10:11:28,501   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-02-26T10:11:28,503   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-02-26T10:11:28,504   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-02-26T10:11:28,505   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-02-26T10:11:28,506   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-02-26T10:11:28,507   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-02-26T10:11:28,509   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-02-26T10:11:28,510   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-02-26T10:11:28,511   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-02-26T10:11:28,512   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-02-26T10:11:28,513   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-02-26T10:11:28,514   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-02-26T10:11:28,515   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-02-26T10:11:28,517   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-02-26T10:11:28,518   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-02-26T10:11:28,519   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-02-26T10:11:28,520   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-02-26T10:11:28,522   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-02-26T10:11:28,523   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-02-26T10:11:28,524   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-02-26T10:11:28,526   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-02-26T10:11:28,527   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-02-26T10:11:28,528   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-02-26T10:11:28,529   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-02-26T10:11:28,530   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-02-26T10:11:28,532   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-02-26T10:11:28,533   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-02-26T10:11:28,534   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-02-26T10:11:28,535   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-02-26T10:11:28,536   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-02-26T10:11:28,538   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-02-26T10:11:28,539   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-02-26T10:11:28,540   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-02-26T10:11:28,541   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-02-26T10:11:28,543   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-02-26T10:11:28,544   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-02-26T10:11:28,545   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-02-26T10:11:28,546   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-02-26T10:11:28,548   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-02-26T10:11:28,549   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-02-26T10:11:28,551   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-02-26T10:11:28,552   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-02-26T10:11:28,553   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-02-26T10:11:28,555   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-02-26T10:11:28,556   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-02-26T10:11:28,557   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-02-26T10:11:28,559   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-02-26T10:11:28,560   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-02-26T10:11:28,561   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-02-26T10:11:28,562   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-02-26T10:11:28,564   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-02-26T10:11:28,565   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-02-26T10:11:28,566   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-02-26T10:11:28,567   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-02-26T10:11:28,569   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-02-26T10:11:28,570   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-02-26T10:11:28,571   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-02-26T10:11:28,572   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-02-26T10:11:28,573   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-02-26T10:11:28,575   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-02-26T10:11:28,576   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-02-26T10:11:28,577   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-02-26T10:11:28,578   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-02-26T10:11:28,579   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-02-26T10:11:28,581   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-02-26T10:11:28,582   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-02-26T10:11:28,583   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-02-26T10:11:28,584   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-02-26T10:11:28,586   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-02-26T10:11:28,587   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-02-26T10:11:28,588   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-02-26T10:11:28,589   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-02-26T10:11:28,590   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-02-26T10:11:28,592   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-02-26T10:11:28,593   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-02-26T10:11:28,594   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-02-26T10:11:28,595   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-02-26T10:11:28,597   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-02-26T10:11:28,598   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-02-26T10:11:28,599   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-02-26T10:11:28,601   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-02-26T10:11:28,602   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-02-26T10:11:28,603   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-02-26T10:11:28,604   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-02-26T10:11:28,606   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-02-26T10:11:28,607   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-02-26T10:11:28,608   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-02-26T10:11:28,609   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-02-26T10:11:28,611   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-02-26T10:11:28,612   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-02-26T10:11:28,614   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-02-26T10:11:28,615   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-02-26T10:11:28,616   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-02-26T10:11:28,618   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-02-26T10:11:28,619   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-02-26T10:11:28,620   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-02-26T10:11:28,622   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-02-26T10:11:28,624   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-02-26T10:11:28,625   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-02-26T10:11:28,626   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-02-26T10:11:28,628   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-02-26T10:11:28,629   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-02-26T10:11:28,631   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-02-26T10:11:28,632   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-02-26T10:11:28,634   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-02-26T10:11:28,635   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-02-26T10:11:28,637   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-02-26T10:11:28,639   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-02-26T10:11:28,641   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-02-26T10:11:28,642   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-02-26T10:11:28,643   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-02-26T10:11:28,645   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-02-26T10:11:28,646   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-02-26T10:11:28,647   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-02-26T10:11:28,648   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-02-26T10:11:28,650   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-02-26T10:11:28,651   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-02-26T10:11:28,652   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-02-26T10:11:28,653   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-02-26T10:11:28,654   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-02-26T10:11:28,656   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-02-26T10:11:28,657   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-02-26T10:11:28,658   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-02-26T10:11:28,659   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-02-26T10:11:28,660   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-02-26T10:11:28,661   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-02-26T10:11:28,663   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-02-26T10:11:28,664   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-02-26T10:11:28,665   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-02-26T10:11:28,666   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-02-26T10:11:28,668   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-02-26T10:11:28,669   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-02-26T10:11:28,670   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-02-26T10:11:28,671   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-02-26T10:11:28,672   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-02-26T10:11:28,674   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-02-26T10:11:28,675   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-02-26T10:11:28,676   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-02-26T10:11:28,677   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-02-26T10:11:28,678   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-02-26T10:11:28,680   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-02-26T10:11:28,681   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-02-26T10:11:28,682   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-02-26T10:11:28,683   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-02-26T10:11:28,685   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-02-26T10:11:28,686   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-02-26T10:11:28,687   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-02-26T10:11:28,688   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-02-26T10:11:28,690   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-02-26T10:11:28,691   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-02-26T10:11:28,692   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-02-26T10:11:28,694   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-02-26T10:11:28,695   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-02-26T10:11:28,696   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-02-26T10:11:28,698   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-02-26T10:11:28,699   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-02-26T10:11:28,700   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-02-26T10:11:28,701   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-02-26T10:11:28,703   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-02-26T10:11:28,704   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-02-26T10:11:28,705   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-02-26T10:11:28,706   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-02-26T10:11:28,708   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-02-26T10:11:28,709   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-02-26T10:11:28,710   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-02-26T10:11:28,711   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-02-26T10:11:28,712   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-02-26T10:11:28,713   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-02-26T10:11:28,715   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-02-26T10:11:28,716   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-02-26T10:11:28,717   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-02-26T10:11:28,719   adding 'moleculekit/smallmol/__init__.py'
2024-02-26T10:11:28,724   adding 'moleculekit/smallmol/smallmol.py'
2024-02-26T10:11:28,726   adding 'moleculekit/smallmol/smallmollib.py'
2024-02-26T10:11:28,728   adding 'moleculekit/smallmol/test_smallmol.py'
2024-02-26T10:11:28,730   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-02-26T10:11:28,732   adding 'moleculekit/smallmol/util.py'
2024-02-26T10:11:28,733   adding 'moleculekit/smallmol/tools/__init__.py'
2024-02-26T10:11:28,735   adding 'moleculekit/smallmol/tools/clustering.py'
2024-02-26T10:11:28,737   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-02-26T10:11:28,738   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-02-26T10:11:28,828   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-02-26T10:11:28,836   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-02-26T10:11:28,838   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-02-26T10:11:28,839   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-02-26T10:11:28,857   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-02-26T10:11:28,860   adding 'moleculekit/tools/__init__.py'
2024-02-26T10:11:28,862   adding 'moleculekit/tools/atomtyper.py'
2024-02-26T10:11:28,864   adding 'moleculekit/tools/autosegment.py'
2024-02-26T10:11:28,866   adding 'moleculekit/tools/crystalpacking.py'
2024-02-26T10:11:28,869   adding 'moleculekit/tools/detect.py'
2024-02-26T10:11:28,871   adding 'moleculekit/tools/docking.py'
2024-02-26T10:11:28,873   adding 'moleculekit/tools/graphalignment.py'
2024-02-26T10:11:28,875   adding 'moleculekit/tools/hhblitsprofile.py'
2024-02-26T10:11:28,876   adding 'moleculekit/tools/modelling.py'
2024-02-26T10:11:28,878   adding 'moleculekit/tools/moleculechecks.py'
2024-02-26T10:11:28,884   adding 'moleculekit/tools/preparation.py'
2024-02-26T10:11:28,887   adding 'moleculekit/tools/preparation_customres.py'
2024-02-26T10:11:28,889   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-02-26T10:11:28,892   adding 'moleculekit/tools/voxeldescriptors.py'
2024-02-26T10:11:28,895   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-02-26T10:11:28,896   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-02-26T10:11:28,987   adding 'moleculekit/wrapping/wrapping.cpp'
2024-02-26T10:11:28,996   adding 'moleculekit/wrapping/wrapping.pyx'
2024-02-26T10:11:28,999   adding 'moleculekit-1.8.22.dist-info/LICENSE'
2024-02-26T10:11:29,000   adding 'moleculekit-1.8.22.dist-info/METADATA'
2024-02-26T10:11:29,001   adding 'moleculekit-1.8.22.dist-info/WHEEL'
2024-02-26T10:11:29,002   adding 'moleculekit-1.8.22.dist-info/top_level.txt'
2024-02-26T10:11:29,007   adding 'moleculekit-1.8.22.dist-info/RECORD'
2024-02-26T10:11:29,310   removing build/bdist.linux-armv7l/wheel
2024-02-26T10:11:29,624   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-02-26T10:11:30,221   Created wheel for moleculekit: filename=moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl size=15251650 sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7
2024-02-26T10:11:30,222   Stored in directory: /tmp/pip-ephem-wheel-cache-u0h8643u/wheels/89/00/d5/80d18c1c5f9e2ff3435e69837ff58966a260b8afb6ed76e696
2024-02-26T10:11:30,248 Successfully built moleculekit
2024-02-26T10:11:30,771 Removed build tracker: '/tmp/pip-build-tracker-za6ago9g'