2024-02-26T10:08:08,215 Created temporary directory: /tmp/pip-build-tracker-fyvwymmw
2024-02-26T10:08:08,216 Initialized build tracking at /tmp/pip-build-tracker-fyvwymmw
2024-02-26T10:08:08,217 Created build tracker: /tmp/pip-build-tracker-fyvwymmw
2024-02-26T10:08:08,217 Entered build tracker: /tmp/pip-build-tracker-fyvwymmw
2024-02-26T10:08:08,218 Created temporary directory: /tmp/pip-wheel-s71q3o6e
2024-02-26T10:08:08,222 Created temporary directory: /tmp/pip-ephem-wheel-cache-3xuuhfjv
2024-02-26T10:08:08,244 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T10:08:08,247 2 location(s) to search for versions of moleculekit:
2024-02-26T10:08:08,247 * https://pypi.org/simple/moleculekit/
2024-02-26T10:08:08,247 * https://www.piwheels.org/simple/moleculekit/
2024-02-26T10:08:08,248 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-02-26T10:08:08,248 Getting page https://pypi.org/simple/moleculekit/
2024-02-26T10:08:08,250 Found index url https://pypi.org/simple/
2024-02-26T10:08:08,402 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-02-26T10:08:08,442   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,442   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-02-26T10:08:08,443   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,444   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-02-26T10:08:08,444   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,445   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-02-26T10:08:08,446   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,447   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-02-26T10:08:08,447   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,448   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-02-26T10:08:08,449   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,449   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-02-26T10:08:08,450   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,451   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-02-26T10:08:08,452   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,452   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-02-26T10:08:08,453   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,453   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-02-26T10:08:08,454   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,455   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-02-26T10:08:08,455   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,456   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-02-26T10:08:08,457   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,458   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-02-26T10:08:08,458   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,459   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-02-26T10:08:08,460   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,460   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-02-26T10:08:08,461   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,462   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-02-26T10:08:08,463   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,463   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-02-26T10:08:08,464   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,464   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-02-26T10:08:08,465   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,465   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-02-26T10:08:08,466   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,467   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-02-26T10:08:08,467   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,468   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-02-26T10:08:08,469   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,470   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-02-26T10:08:08,470   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,471   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-02-26T10:08:08,472   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,473   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-02-26T10:08:08,474   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,474   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-02-26T10:08:08,475   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,475   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-02-26T10:08:08,476   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,476   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-02-26T10:08:08,477   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,477   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-02-26T10:08:08,478   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,479   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-02-26T10:08:08,480   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,480   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-02-26T10:08:08,481   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,482   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-02-26T10:08:08,482   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,483   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-02-26T10:08:08,484   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,485   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-02-26T10:08:08,485   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T10:08:08,486   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-02-26T10:08:08,533   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-02-26T10:08:08,534   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-02-26T10:08:08,535   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-02-26T10:08:08,536   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
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2024-02-26T10:08:08,538   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
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2024-02-26T10:08:08,540   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-02-26T10:08:08,541   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
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2024-02-26T10:08:08,543   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
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2024-02-26T10:08:08,544   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-02-26T10:08:08,545   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-02-26T10:08:08,546   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-02-26T10:08:08,547   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-02-26T10:08:08,547   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-02-26T10:08:08,548   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-02-26T10:08:08,549   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-02-26T10:08:08,550   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-02-26T10:08:08,550   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-02-26T10:08:08,551   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-02-26T10:08:08,552   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-02-26T10:08:08,553   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-02-26T10:08:08,554   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-02-26T10:08:08,554   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-02-26T10:08:08,555   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-02-26T10:08:08,555   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-02-26T10:08:08,556   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-02-26T10:08:08,557   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-02-26T10:08:08,557   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-02-26T10:08:08,558   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-02-26T10:08:08,559   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
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2024-02-26T10:08:08,560   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-02-26T10:08:08,561   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-02-26T10:08:08,562   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-02-26T10:08:08,562   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-02-26T10:08:08,563   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-02-26T10:08:08,564   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-02-26T10:08:08,564   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-02-26T10:08:08,566   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-02-26T10:08:08,566   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-02-26T10:08:08,567   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-02-26T10:08:08,568   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-02-26T10:08:08,569   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-02-26T10:08:08,570   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-02-26T10:08:08,571   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-02-26T10:08:08,572   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
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2024-02-26T10:08:08,574   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-02-26T10:08:08,575   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-02-26T10:08:08,576   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-02-26T10:08:08,577   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-02-26T10:08:08,578   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-02-26T10:08:08,579   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
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2024-02-26T10:08:08,583   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-02-26T10:08:08,583   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-02-26T10:08:08,584   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
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2024-02-26T10:08:08,589   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-02-26T10:08:08,590   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-02-26T10:08:08,591   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-02-26T10:08:08,592   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-02-26T10:08:08,593   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-02-26T10:08:08,594   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-02-26T10:08:08,595   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-02-26T10:08:08,596   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-02-26T10:08:08,597   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-02-26T10:08:08,598   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-02-26T10:08:08,599   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-02-26T10:08:08,599   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-02-26T10:08:08,600   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-02-26T10:08:08,601   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-02-26T10:08:08,602   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-02-26T10:08:08,603   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-02-26T10:08:08,604   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-02-26T10:08:08,605   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-02-26T10:08:08,606   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-02-26T10:08:08,607   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-02-26T10:08:08,608   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-02-26T10:08:08,609   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-02-26T10:08:08,610   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-02-26T10:08:08,611   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-02-26T10:08:08,612   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-02-26T10:08:08,613   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-02-26T10:08:08,614   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-02-26T10:08:08,615   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-02-26T10:08:08,615   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-02-26T10:08:08,616   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-02-26T10:08:08,617   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-02-26T10:08:08,618   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-02-26T10:08:08,619   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-02-26T10:08:08,620   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-02-26T10:08:08,621 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-02-26T10:08:08,622 Getting page https://www.piwheels.org/simple/moleculekit/
2024-02-26T10:08:08,623 Found index url https://www.piwheels.org/simple/
2024-02-26T10:08:08,816 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-02-26T10:08:08,893   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T10:08:08,895   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv6l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,896   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv7l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv6l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,897   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv6l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,898   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv7l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv6l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,899   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv7l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,900   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv6l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv7l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,901   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp311-cp311-linux_armv6l.whl#sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,902   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp311-cp311-linux_armv7l.whl#sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp39-cp39-linux_armv6l.whl#sha256=c52f9eca095400d7d491afc702832a8dbfa71a6a46826bd4d01cd3808f7b3581 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,903   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp39-cp39-linux_armv7l.whl#sha256=c52f9eca095400d7d491afc702832a8dbfa71a6a46826bd4d01cd3808f7b3581 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,904   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp311-cp311-linux_armv6l.whl#sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,905   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp311-cp311-linux_armv7l.whl#sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,905   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp39-cp39-linux_armv6l.whl#sha256=20842a6d4c7f080f513b9a5e3b6b184036902d470d653a3b8cdd6fefaab51370 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,906   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.15-cp39-cp39-linux_armv7l.whl#sha256=20842a6d4c7f080f513b9a5e3b6b184036902d470d653a3b8cdd6fefaab51370 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,906   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp311-cp311-linux_armv6l.whl#sha256=8629ac0797c90996eccc556595395a73f694a991add5f87b742e90afa9657440 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T10:08:08,907   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp39-cp39-linux_armv6l.whl#sha256=e277c15109b7b3caa507bc1876045eab24d0e904508747d8163e6ef9e2908adc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T10:08:08,908   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.14-cp39-cp39-linux_armv7l.whl#sha256=e277c15109b7b3caa507bc1876045eab24d0e904508747d8163e6ef9e2908adc (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T10:08:08,983   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.7-cp39-cp39-linux_armv6l.whl#sha256=3dd3a190b8fe8100d9bbf6e197fca336903aebf847bab8d6ac684be12a816989 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T10:08:08,984   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.6-cp39-cp39-linux_armv6l.whl#sha256=c81af8eb30e31f41a57d6e31c2e4d4a5a6f85041fe9f79dcd843adf62c919a7a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T10:08:08,985   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,986   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,986   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv6l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,987   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,987   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,988   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,988   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,989   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,989   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,990   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,990   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,991   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,991   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,992   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,992   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,993   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,994   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,994   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,995   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,995   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,995   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,996   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,997   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,997   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,998   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,999   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:08,999   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,000   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,001   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,001   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,013   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,016   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,016   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,030   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T10:08:09,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,056   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,057   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,058   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,059   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,060   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,060   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,061   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,062   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,063   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,064   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,064   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,065   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,065   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T10:08:09,075 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-02-26T10:08:09,076 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-02-26T10:08:09,119 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-02-26T10:08:09,137 Collecting moleculekit==1.8.24
2024-02-26T10:08:09,139   Created temporary directory: /tmp/pip-unpack-fbjoontd
2024-02-26T10:08:09,477   Downloading moleculekit-1.8.24.tar.gz (6.8 MB)
2024-02-26T10:08:12,124   Added moleculekit==1.8.24 from https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz to build tracker '/tmp/pip-build-tracker-fyvwymmw'
2024-02-26T10:08:12,133   Created temporary directory: /tmp/pip-build-env-me8oktgj
2024-02-26T10:08:12,137   Installing build dependencies: started
2024-02-26T10:08:12,138   Running command pip subprocess to install build dependencies
2024-02-26T10:08:13,278   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-02-26T10:08:13,786   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T10:08:15,986   Collecting setuptools
2024-02-26T10:08:16,145     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-02-26T10:08:16,760     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:08:16,763     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
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2024-02-26T10:08:16,770     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:08:16,773     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-02-26T10:08:17,042   Collecting numpy>=1.18.5
2024-02-26T10:08:17,057     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-02-26T10:08:18,489   Collecting Cython>=0.29.21
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2024-02-26T10:08:18,905   Collecting toml
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2024-02-26T10:08:19,095   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
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2024-02-26T10:08:21,758   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-02-26T10:08:21,790     Creating /tmp/pip-build-env-me8oktgj/overlay/local/bin
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2024-02-26T10:08:35,887   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 versioneer-0.28

2024-02-26T10:08:36,139   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-26T10:08:36,139   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-26T10:08:36,565   Installing build dependencies: finished with status 'done'
2024-02-26T10:08:36,568   Getting requirements to build wheel: started
2024-02-26T10:08:36,569   Running command Getting requirements to build wheel
2024-02-26T10:09:11,368   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-02-26T10:09:19,456   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2024-02-26T10:09:19,458   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T10:09:19,458   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
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2024-02-26T10:09:19,725   running egg_info
2024-02-26T10:09:19,731   writing moleculekit.egg-info/PKG-INFO
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2024-02-26T10:09:19,804   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:09:19,831   reading manifest template 'MANIFEST.in'
2024-02-26T10:09:20,077   no previously-included directories found matching 'moleculekit/test-data'
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2024-02-26T10:09:20,081   adding license file 'LICENSE'
2024-02-26T10:09:20,096   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:09:21,547   Getting requirements to build wheel: finished with status 'done'
2024-02-26T10:09:21,561   Installing backend dependencies: started
2024-02-26T10:09:21,562   Running command pip subprocess to install backend dependencies
2024-02-26T10:09:22,797   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-02-26T10:09:23,360   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T10:09:23,858   Collecting wheel
2024-02-26T10:09:27,715     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-02-26T10:09:30,035   Installing collected packages: wheel
2024-02-26T10:09:30,256     Creating /tmp/pip-build-env-me8oktgj/normal/local/bin
2024-02-26T10:09:30,258     changing mode of /tmp/pip-build-env-me8oktgj/normal/local/bin/wheel to 755
2024-02-26T10:09:30,270   Successfully installed wheel-0.42.0

2024-02-26T10:09:30,522   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-02-26T10:09:30,522   [notice] To update, run: python3 -m pip install --upgrade pip
2024-02-26T10:09:30,752   Installing backend dependencies: finished with status 'done'
2024-02-26T10:09:30,753   Created temporary directory: /tmp/pip-modern-metadata-2psifa9u
2024-02-26T10:09:30,756   Preparing metadata (pyproject.toml): started
2024-02-26T10:09:30,757   Running command Preparing metadata (pyproject.toml)
2024-02-26T10:09:33,103   running dist_info
2024-02-26T10:09:33,105   creating /tmp/pip-modern-metadata-2psifa9u/moleculekit.egg-info
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2024-02-26T10:09:33,191   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:33,192   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:33,192   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:33,193   reading manifest file '/tmp/pip-modern-metadata-2psifa9u/moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:09:33,193   reading manifest template 'MANIFEST.in'
2024-02-26T10:09:33,443   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T10:09:33,444   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T10:09:33,445   no previously-included directories found matching 'package'
2024-02-26T10:09:33,446   adding license file 'LICENSE'
2024-02-26T10:09:33,457   writing manifest file '/tmp/pip-modern-metadata-2psifa9u/moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:09:33,465   creating '/tmp/pip-modern-metadata-2psifa9u/moleculekit-1.8.24.dist-info'
2024-02-26T10:09:33,696   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-26T10:09:33,700   Source in /tmp/pip-wheel-s71q3o6e/moleculekit_7661e9f33cf5453b81fdd302b1d28d8f has version 1.8.24, which satisfies requirement moleculekit==1.8.24 from https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz
2024-02-26T10:09:33,701   Removed moleculekit==1.8.24 from https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz from build tracker '/tmp/pip-build-tracker-fyvwymmw'
2024-02-26T10:09:33,707 Created temporary directory: /tmp/pip-unpack-12qg69kg
2024-02-26T10:09:33,708 Created temporary directory: /tmp/pip-unpack-i2z1hu88
2024-02-26T10:09:33,716 Building wheels for collected packages: moleculekit
2024-02-26T10:09:33,720   Created temporary directory: /tmp/pip-wheel-nyiu0sk5
2024-02-26T10:09:33,720   Destination directory: /tmp/pip-wheel-nyiu0sk5
2024-02-26T10:09:33,722   Building wheel for moleculekit (pyproject.toml): started
2024-02-26T10:09:33,723   Running command Building wheel for moleculekit (pyproject.toml)
2024-02-26T10:09:35,909   running bdist_wheel
2024-02-26T10:09:35,924   running build
2024-02-26T10:09:35,925   running build_py
2024-02-26T10:09:35,931   creating build
2024-02-26T10:09:35,932   creating build/lib.linux-armv7l-cpython-311
2024-02-26T10:09:35,932   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,934   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,936   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,939   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,940   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,943   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,945   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,947   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,948   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,952   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,954   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,956   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,959   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,961   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,963   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,965   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,967   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,971   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,973   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,975   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,978   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,980   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:35,985   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:09:35,987   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:09:35,988   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:09:35,991   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:09:35,993   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-02-26T10:09:35,996   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:35,997   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,000   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,002   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,005   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,008   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,010   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,012   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,015   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,017   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,020   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,022   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,025   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,027   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,030   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-02-26T10:09:36,034   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-02-26T10:09:36,035   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-02-26T10:09:36,038   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,039   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,042   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,045   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,048   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,051   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,053   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,056   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,059   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,061   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,063   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,066   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,068   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,071   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,073   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,075   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-02-26T10:09:36,078   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:09:36,079   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:09:36,083   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:09:36,085   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-02-26T10:09:36,090   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:09:36,091   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:09:36,094   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:09:36,096   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:09:36,098   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:09:36,099   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:09:36,102   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:09:36,104   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,105   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,109   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,111   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,113   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,115   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,118   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-02-26T10:09:36,120   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-02-26T10:09:36,121   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-02-26T10:09:36,123   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-02-26T10:09:36,126   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:09:36,126   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:09:36,128   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:09:36,130   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:09:36,132   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-02-26T10:09:36,134   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:09:36,135   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:09:36,138   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:09:36,140   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:09:36,143   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-02-26T10:09:36,145   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-02-26T10:09:36,145   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-02-26T10:09:36,147   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-02-26T10:09:36,150   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:09:36,151   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:09:36,153   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:09:36,154   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:09:36,157   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-02-26T10:09:36,159   running egg_info
2024-02-26T10:09:36,164   writing moleculekit.egg-info/PKG-INFO
2024-02-26T10:09:36,167   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T10:09:36,168   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T10:09:36,169   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-26T10:09:36,186   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,187   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,187   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,188   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,188   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,189   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,190   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,190   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,191   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,191   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,191   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,192   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,192   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,193   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,193   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,194   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,194   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,195   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,195   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,196   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,197   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,197   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,198   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,198   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,199   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,200   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,200   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,201   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,201   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,202   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,202   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,203   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,203   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,204   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,204   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,205   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,205   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,206   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,206   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,207   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,207   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,208   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,209   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,209   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,210   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,210   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,211   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,211   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,211   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,212   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,212   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,213   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,213   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,214   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,214   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,215   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,215   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,216   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,217   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,217   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,218   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,219   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,219   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,220   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,220   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,220   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,221   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,221   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,222   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,222   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,223   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,224   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,224   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,225   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,225   dependency /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T10:09:36,226   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:09:36,226   reading manifest template 'MANIFEST.in'
2024-02-26T10:09:36,457   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T10:09:36,458   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T10:09:36,459   no previously-included directories found matching 'package'
2024-02-26T10:09:36,460   adding license file 'LICENSE'
2024-02-26T10:09:36,475   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T10:09:36,500   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-02-26T10:09:36,500   !!

2024-02-26T10:09:36,502           ********************************************************************************
2024-02-26T10:09:36,502           ############################
2024-02-26T10:09:36,502           # Package would be ignored #
2024-02-26T10:09:36,503           ############################
2024-02-26T10:09:36,503           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-02-26T10:09:36,504           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,504           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,505           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-02-26T10:09:36,505           to the `packages` configuration field.

2024-02-26T10:09:36,506           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,507           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,507           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,508           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,509           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,510           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-02-26T10:09:36,510           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-02-26T10:09:36,510           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,511           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,511           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,512           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,513           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,515           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,515                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,516                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,517                 directory, all directories are treated like packages.
2024-02-26T10:09:36,517           ********************************************************************************

2024-02-26T10:09:36,518   !!
2024-02-26T10:09:36,519     check.warn(importable)
2024-02-26T10:09:36,519   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-02-26T10:09:36,520   !!

2024-02-26T10:09:36,521           ********************************************************************************
2024-02-26T10:09:36,522           ############################
2024-02-26T10:09:36,522           # Package would be ignored #
2024-02-26T10:09:36,523           ############################
2024-02-26T10:09:36,523           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-02-26T10:09:36,524           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,525           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,525           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-02-26T10:09:36,526           to the `packages` configuration field.

2024-02-26T10:09:36,527           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,527           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,528           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,529           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,530           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,530           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-02-26T10:09:36,531           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-02-26T10:09:36,531           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,531           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,532           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,532           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,533           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,534           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,534                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,535                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,535                 directory, all directories are treated like packages.
2024-02-26T10:09:36,535           ********************************************************************************

2024-02-26T10:09:36,536   !!
2024-02-26T10:09:36,537     check.warn(importable)
2024-02-26T10:09:36,537   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-02-26T10:09:36,537   !!

2024-02-26T10:09:36,538           ********************************************************************************
2024-02-26T10:09:36,539           ############################
2024-02-26T10:09:36,539           # Package would be ignored #
2024-02-26T10:09:36,540           ############################
2024-02-26T10:09:36,540           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-02-26T10:09:36,541           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,541           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,542           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-02-26T10:09:36,542           to the `packages` configuration field.

2024-02-26T10:09:36,543           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,544           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,545           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,546           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,547           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,548           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-02-26T10:09:36,548           already explicitly excluding 'moleculekit.cython_utils' via
2024-02-26T10:09:36,549           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,549           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,550           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,551           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,552           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,553           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,554                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,554                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,555                 directory, all directories are treated like packages.
2024-02-26T10:09:36,556           ********************************************************************************

2024-02-26T10:09:36,556   !!
2024-02-26T10:09:36,557     check.warn(importable)
2024-02-26T10:09:36,557   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-02-26T10:09:36,557   !!

2024-02-26T10:09:36,558           ********************************************************************************
2024-02-26T10:09:36,558           ############################
2024-02-26T10:09:36,559           # Package would be ignored #
2024-02-26T10:09:36,559           ############################
2024-02-26T10:09:36,559           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-02-26T10:09:36,560           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,561           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,561           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-02-26T10:09:36,561           to the `packages` configuration field.

2024-02-26T10:09:36,562           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,562           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,563           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,564           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,565           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,566           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-02-26T10:09:36,566           already explicitly excluding 'moleculekit.distance_utils' via
2024-02-26T10:09:36,567           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,567           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,568           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,569           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,570           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,571           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,572                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,572                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,573                 directory, all directories are treated like packages.
2024-02-26T10:09:36,573           ********************************************************************************

2024-02-26T10:09:36,574   !!
2024-02-26T10:09:36,574     check.warn(importable)
2024-02-26T10:09:36,575   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-02-26T10:09:36,575   !!

2024-02-26T10:09:36,576           ********************************************************************************
2024-02-26T10:09:36,577           ############################
2024-02-26T10:09:36,577           # Package would be ignored #
2024-02-26T10:09:36,578           ############################
2024-02-26T10:09:36,578           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-02-26T10:09:36,579           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,580           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,580           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-02-26T10:09:36,581           to the `packages` configuration field.

2024-02-26T10:09:36,582           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,582           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,582           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,583           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,584           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,584           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-02-26T10:09:36,585           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-02-26T10:09:36,585           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,585           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,586           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,586           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,587           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,588           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,589                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,589                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,590                 directory, all directories are treated like packages.
2024-02-26T10:09:36,590           ********************************************************************************

2024-02-26T10:09:36,591   !!
2024-02-26T10:09:36,592     check.warn(importable)
2024-02-26T10:09:36,592   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-02-26T10:09:36,593   !!

2024-02-26T10:09:36,594           ********************************************************************************
2024-02-26T10:09:36,595           ############################
2024-02-26T10:09:36,595           # Package would be ignored #
2024-02-26T10:09:36,596           ############################
2024-02-26T10:09:36,597           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-02-26T10:09:36,597           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,598           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,599           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-02-26T10:09:36,599           to the `packages` configuration field.

2024-02-26T10:09:36,600           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,601           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,601           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,602           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,603           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,605           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-02-26T10:09:36,605           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-02-26T10:09:36,606           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,606           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,607           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,608           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,609           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,610           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,610                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,610                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,611                 directory, all directories are treated like packages.
2024-02-26T10:09:36,611           ********************************************************************************

2024-02-26T10:09:36,612   !!
2024-02-26T10:09:36,612     check.warn(importable)
2024-02-26T10:09:36,612   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-02-26T10:09:36,613   !!

2024-02-26T10:09:36,613           ********************************************************************************
2024-02-26T10:09:36,614           ############################
2024-02-26T10:09:36,614           # Package would be ignored #
2024-02-26T10:09:36,614           ############################
2024-02-26T10:09:36,615           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-02-26T10:09:36,615           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,616           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,616           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-02-26T10:09:36,617           to the `packages` configuration field.

2024-02-26T10:09:36,618           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,618           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,619           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,620           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,621           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,622           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-02-26T10:09:36,623           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-02-26T10:09:36,623           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,624           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,624           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,625           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,626           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,627           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,628                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,628                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,629                 directory, all directories are treated like packages.
2024-02-26T10:09:36,629           ********************************************************************************

2024-02-26T10:09:36,630   !!
2024-02-26T10:09:36,631     check.warn(importable)
2024-02-26T10:09:36,631   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-02-26T10:09:36,632   !!

2024-02-26T10:09:36,633           ********************************************************************************
2024-02-26T10:09:36,634           ############################
2024-02-26T10:09:36,634           # Package would be ignored #
2024-02-26T10:09:36,634           ############################
2024-02-26T10:09:36,635           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-02-26T10:09:36,635           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,636           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,636           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-02-26T10:09:36,636           to the `packages` configuration field.

2024-02-26T10:09:36,637           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,637           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,638           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,638           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,639           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,640           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-02-26T10:09:36,640           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-02-26T10:09:36,640           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,641           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,641           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,642           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,643           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,645           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,646                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,646                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,647                 directory, all directories are treated like packages.
2024-02-26T10:09:36,647           ********************************************************************************

2024-02-26T10:09:36,649   !!
2024-02-26T10:09:36,649     check.warn(importable)
2024-02-26T10:09:36,650   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-02-26T10:09:36,650   !!

2024-02-26T10:09:36,651           ********************************************************************************
2024-02-26T10:09:36,652           ############################
2024-02-26T10:09:36,652           # Package would be ignored #
2024-02-26T10:09:36,653           ############################
2024-02-26T10:09:36,653           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-02-26T10:09:36,654           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,655           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,655           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-02-26T10:09:36,656           to the `packages` configuration field.

2024-02-26T10:09:36,657           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,657           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,658           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,659           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,660           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,661           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-02-26T10:09:36,662           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-02-26T10:09:36,662           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,662           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,663           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,664           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,665           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,666           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,666                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,667                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,667                 directory, all directories are treated like packages.
2024-02-26T10:09:36,668           ********************************************************************************

2024-02-26T10:09:36,669   !!
2024-02-26T10:09:36,669     check.warn(importable)
2024-02-26T10:09:36,670   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-02-26T10:09:36,670   !!

2024-02-26T10:09:36,671           ********************************************************************************
2024-02-26T10:09:36,672           ############################
2024-02-26T10:09:36,673           # Package would be ignored #
2024-02-26T10:09:36,673           ############################
2024-02-26T10:09:36,674           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-02-26T10:09:36,674           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,675           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,676           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-02-26T10:09:36,676           to the `packages` configuration field.

2024-02-26T10:09:36,677           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,678           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,679           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,680           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,681           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,682           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-02-26T10:09:36,682           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-02-26T10:09:36,683           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,683           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,684           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,685           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,686           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,687           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,688                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,689                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,689                 directory, all directories are treated like packages.
2024-02-26T10:09:36,690           ********************************************************************************

2024-02-26T10:09:36,691   !!
2024-02-26T10:09:36,692     check.warn(importable)
2024-02-26T10:09:36,692   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-02-26T10:09:36,692   !!

2024-02-26T10:09:36,693           ********************************************************************************
2024-02-26T10:09:36,694           ############################
2024-02-26T10:09:36,694           # Package would be ignored #
2024-02-26T10:09:36,701           ############################
2024-02-26T10:09:36,708           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-02-26T10:09:36,709           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,710           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,711           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-02-26T10:09:36,711           to the `packages` configuration field.

2024-02-26T10:09:36,712           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,712           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,713           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,714           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,715           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,716           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-02-26T10:09:36,716           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-02-26T10:09:36,717           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,717           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,718           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,719           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,721           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,726           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,732                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,733                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,734                 directory, all directories are treated like packages.
2024-02-26T10:09:36,734           ********************************************************************************

2024-02-26T10:09:36,735   !!
2024-02-26T10:09:36,736     check.warn(importable)
2024-02-26T10:09:36,736   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-02-26T10:09:36,737   !!

2024-02-26T10:09:36,738           ********************************************************************************
2024-02-26T10:09:36,739           ############################
2024-02-26T10:09:36,739           # Package would be ignored #
2024-02-26T10:09:36,740           ############################
2024-02-26T10:09:36,740           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-02-26T10:09:36,741           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,744           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,745           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-02-26T10:09:36,745           to the `packages` configuration field.

2024-02-26T10:09:36,746           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,749           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,755           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,759           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,760           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,761           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-02-26T10:09:36,761           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-02-26T10:09:36,762           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,762           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,763           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,763           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,764           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,766           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,766                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,767                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,767                 directory, all directories are treated like packages.
2024-02-26T10:09:36,768           ********************************************************************************

2024-02-26T10:09:36,769   !!
2024-02-26T10:09:36,770     check.warn(importable)
2024-02-26T10:09:36,772   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-02-26T10:09:36,776   !!

2024-02-26T10:09:36,784           ********************************************************************************
2024-02-26T10:09:36,784           ############################
2024-02-26T10:09:36,785           # Package would be ignored #
2024-02-26T10:09:36,786           ############################
2024-02-26T10:09:36,786           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-02-26T10:09:36,787           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,788           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,789           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-02-26T10:09:36,790           to the `packages` configuration field.

2024-02-26T10:09:36,806           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,807           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,807           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,808           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,809           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,811           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-02-26T10:09:36,811           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-02-26T10:09:36,812           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,813           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,813           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,814           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,815           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,816           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,817                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,817                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,818                 directory, all directories are treated like packages.
2024-02-26T10:09:36,818           ********************************************************************************

2024-02-26T10:09:36,819   !!
2024-02-26T10:09:36,819     check.warn(importable)
2024-02-26T10:09:36,820   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-02-26T10:09:36,820   !!

2024-02-26T10:09:36,821           ********************************************************************************
2024-02-26T10:09:36,822           ############################
2024-02-26T10:09:36,822           # Package would be ignored #
2024-02-26T10:09:36,823           ############################
2024-02-26T10:09:36,823           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-02-26T10:09:36,824           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,825           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,825           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-02-26T10:09:36,826           to the `packages` configuration field.

2024-02-26T10:09:36,827           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,827           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,828           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,829           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,830           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,832           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-02-26T10:09:36,832           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-02-26T10:09:36,833           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,834           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,834           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,835           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,837           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,838           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,839                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,839                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,840                 directory, all directories are treated like packages.
2024-02-26T10:09:36,841           ********************************************************************************

2024-02-26T10:09:36,842   !!
2024-02-26T10:09:36,842     check.warn(importable)
2024-02-26T10:09:36,843   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-02-26T10:09:36,844   !!

2024-02-26T10:09:36,845           ********************************************************************************
2024-02-26T10:09:36,846           ############################
2024-02-26T10:09:36,846           # Package would be ignored #
2024-02-26T10:09:36,846           ############################
2024-02-26T10:09:36,847           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-02-26T10:09:36,847           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,848           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,849           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-02-26T10:09:36,849           to the `packages` configuration field.

2024-02-26T10:09:36,850           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,850           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,851           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,852           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,853           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,853           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-02-26T10:09:36,854           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-02-26T10:09:36,854           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,855           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,855           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:36,856           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:36,857           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:36,859           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:36,860                 even if it does not contain any `.py` files.
2024-02-26T10:09:36,860                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:36,861                 directory, all directories are treated like packages.
2024-02-26T10:09:36,862           ********************************************************************************

2024-02-26T10:09:36,863   !!
2024-02-26T10:09:36,864     check.warn(importable)
2024-02-26T10:09:36,864   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-02-26T10:09:36,865   !!

2024-02-26T10:09:36,866           ********************************************************************************
2024-02-26T10:09:36,867           ############################
2024-02-26T10:09:36,867           # Package would be ignored #
2024-02-26T10:09:36,868           ############################
2024-02-26T10:09:36,868           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-02-26T10:09:36,869           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:36,870           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:36,870           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-02-26T10:09:36,871           to the `packages` configuration field.

2024-02-26T10:09:36,872           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:36,873           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:36,874           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:36,875           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:36,886           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:36,900           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-02-26T10:09:36,910           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-02-26T10:09:36,927           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:36,949           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:36,969           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,005           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,006           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,007           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,007                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,008                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,008                 directory, all directories are treated like packages.
2024-02-26T10:09:37,009           ********************************************************************************

2024-02-26T10:09:37,009   !!
2024-02-26T10:09:37,010     check.warn(importable)
2024-02-26T10:09:37,010   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-02-26T10:09:37,010   !!

2024-02-26T10:09:37,012           ********************************************************************************
2024-02-26T10:09:37,012           ############################
2024-02-26T10:09:37,013           # Package would be ignored #
2024-02-26T10:09:37,013           ############################
2024-02-26T10:09:37,014           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-02-26T10:09:37,014           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,015           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,016           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-02-26T10:09:37,017           to the `packages` configuration field.

2024-02-26T10:09:37,018           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,018           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,019           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,020           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,021           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,023           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-02-26T10:09:37,023           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-02-26T10:09:37,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,024           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,025           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,026           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,027           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,029           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,029                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,030                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,031                 directory, all directories are treated like packages.
2024-02-26T10:09:37,031           ********************************************************************************

2024-02-26T10:09:37,033   !!
2024-02-26T10:09:37,033     check.warn(importable)
2024-02-26T10:09:37,034   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-02-26T10:09:37,034   !!

2024-02-26T10:09:37,035           ********************************************************************************
2024-02-26T10:09:37,035           ############################
2024-02-26T10:09:37,035           # Package would be ignored #
2024-02-26T10:09:37,036           ############################
2024-02-26T10:09:37,036           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-02-26T10:09:37,037           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,037           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,038           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-02-26T10:09:37,038           to the `packages` configuration field.

2024-02-26T10:09:37,039           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,040           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,040           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,041           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,042           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,043           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-02-26T10:09:37,043           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-02-26T10:09:37,044           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,044           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,045           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,045           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,046           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,048           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,048                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,049                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,049                 directory, all directories are treated like packages.
2024-02-26T10:09:37,050           ********************************************************************************

2024-02-26T10:09:37,051   !!
2024-02-26T10:09:37,051     check.warn(importable)
2024-02-26T10:09:37,052   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-02-26T10:09:37,052   !!

2024-02-26T10:09:37,053           ********************************************************************************
2024-02-26T10:09:37,054           ############################
2024-02-26T10:09:37,054           # Package would be ignored #
2024-02-26T10:09:37,055           ############################
2024-02-26T10:09:37,055           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-02-26T10:09:37,056           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,057           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,057           package, please make sure that 'moleculekit.share' is explicitly added
2024-02-26T10:09:37,058           to the `packages` configuration field.

2024-02-26T10:09:37,059           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,059           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,059           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,060           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,061           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,062           If you don't want 'moleculekit.share' to be distributed and are
2024-02-26T10:09:37,062           already explicitly excluding 'moleculekit.share' via
2024-02-26T10:09:37,063           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,063           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,064           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,064           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,065           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,066           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,067                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,067                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,068                 directory, all directories are treated like packages.
2024-02-26T10:09:37,068           ********************************************************************************

2024-02-26T10:09:37,069   !!
2024-02-26T10:09:37,070     check.warn(importable)
2024-02-26T10:09:37,070   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-02-26T10:09:37,071   !!

2024-02-26T10:09:37,072           ********************************************************************************
2024-02-26T10:09:37,072           ############################
2024-02-26T10:09:37,073           # Package would be ignored #
2024-02-26T10:09:37,073           ############################
2024-02-26T10:09:37,074           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-02-26T10:09:37,074           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,075           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,076           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-02-26T10:09:37,076           to the `packages` configuration field.

2024-02-26T10:09:37,077           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,078           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,078           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,079           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,080           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,081           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-02-26T10:09:37,082           already explicitly excluding 'moleculekit.share.atomselect' via
2024-02-26T10:09:37,082           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,083           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,083           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,085           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,085           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,087           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,087                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,087                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,088                 directory, all directories are treated like packages.
2024-02-26T10:09:37,088           ********************************************************************************

2024-02-26T10:09:37,089   !!
2024-02-26T10:09:37,089     check.warn(importable)
2024-02-26T10:09:37,090   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-02-26T10:09:37,090   !!

2024-02-26T10:09:37,091           ********************************************************************************
2024-02-26T10:09:37,091           ############################
2024-02-26T10:09:37,092           # Package would be ignored #
2024-02-26T10:09:37,092           ############################
2024-02-26T10:09:37,093           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-02-26T10:09:37,093           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,094           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,094           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-02-26T10:09:37,095           to the `packages` configuration field.

2024-02-26T10:09:37,096           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,096           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,097           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,098           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,099           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,099           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-02-26T10:09:37,100           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-02-26T10:09:37,100           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,101           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,101           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,102           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,103           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,105           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,105                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,106                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,106                 directory, all directories are treated like packages.
2024-02-26T10:09:37,107           ********************************************************************************

2024-02-26T10:09:37,108   !!
2024-02-26T10:09:37,108     check.warn(importable)
2024-02-26T10:09:37,109   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-02-26T10:09:37,109   !!

2024-02-26T10:09:37,110           ********************************************************************************
2024-02-26T10:09:37,111           ############################
2024-02-26T10:09:37,111           # Package would be ignored #
2024-02-26T10:09:37,112           ############################
2024-02-26T10:09:37,112           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-02-26T10:09:37,113           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,113           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,114           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-02-26T10:09:37,114           to the `packages` configuration field.

2024-02-26T10:09:37,115           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,115           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,116           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,117           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,117           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,118           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-02-26T10:09:37,119           already explicitly excluding 'moleculekit.tmalign' via
2024-02-26T10:09:37,119           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,119           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,120           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,121           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,122           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,123           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,124                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,124                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,124                 directory, all directories are treated like packages.
2024-02-26T10:09:37,125           ********************************************************************************

2024-02-26T10:09:37,126   !!
2024-02-26T10:09:37,126     check.warn(importable)
2024-02-26T10:09:37,127   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-02-26T10:09:37,127   !!

2024-02-26T10:09:37,128           ********************************************************************************
2024-02-26T10:09:37,129           ############################
2024-02-26T10:09:37,129           # Package would be ignored #
2024-02-26T10:09:37,130           ############################
2024-02-26T10:09:37,130           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-02-26T10:09:37,131           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,132           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,132           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-02-26T10:09:37,133           to the `packages` configuration field.

2024-02-26T10:09:37,134           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,134           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,135           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,136           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,137           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,138           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-02-26T10:09:37,138           already explicitly excluding 'moleculekit.tmalign.include' via
2024-02-26T10:09:37,139           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,139           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,140           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,141           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,141           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,143           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,143                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,144                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,144                 directory, all directories are treated like packages.
2024-02-26T10:09:37,144           ********************************************************************************

2024-02-26T10:09:37,145   !!
2024-02-26T10:09:37,146     check.warn(importable)
2024-02-26T10:09:37,146   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-02-26T10:09:37,147   !!

2024-02-26T10:09:37,148           ********************************************************************************
2024-02-26T10:09:37,148           ############################
2024-02-26T10:09:37,149           # Package would be ignored #
2024-02-26T10:09:37,149           ############################
2024-02-26T10:09:37,150           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-02-26T10:09:37,150           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,151           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,152           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-02-26T10:09:37,152           to the `packages` configuration field.

2024-02-26T10:09:37,153           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,154           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,154           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,155           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,156           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,157           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-02-26T10:09:37,159           already explicitly excluding 'moleculekit.tmalign.src' via
2024-02-26T10:09:37,160           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,161           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,161           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,162           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,164           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,165           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,166                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,166                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,167                 directory, all directories are treated like packages.
2024-02-26T10:09:37,168           ********************************************************************************

2024-02-26T10:09:37,169   !!
2024-02-26T10:09:37,170     check.warn(importable)
2024-02-26T10:09:37,170   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-02-26T10:09:37,171   !!

2024-02-26T10:09:37,172           ********************************************************************************
2024-02-26T10:09:37,173           ############################
2024-02-26T10:09:37,173           # Package would be ignored #
2024-02-26T10:09:37,174           ############################
2024-02-26T10:09:37,174           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-02-26T10:09:37,175           but it is absent from setuptools' `packages` configuration.

2024-02-26T10:09:37,176           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T10:09:37,176           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-02-26T10:09:37,177           to the `packages` configuration field.

2024-02-26T10:09:37,178           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T10:09:37,178           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T10:09:37,179           instead of `find_packages(...)`/`find:`).

2024-02-26T10:09:37,180           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T10:09:37,181           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T10:09:37,183           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-02-26T10:09:37,183           already explicitly excluding 'moleculekit.wrapping' via
2024-02-26T10:09:37,184           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T10:09:37,184           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T10:09:37,185           combination with a more fine grained `package-data` configuration.

2024-02-26T10:09:37,186           You can read more about "package data files" on setuptools documentation page:

2024-02-26T10:09:37,187           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T10:09:37,189           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T10:09:37,190                 even if it does not contain any `.py` files.
2024-02-26T10:09:37,190                 On the other hand, currently there is no concept of package data
2024-02-26T10:09:37,191                 directory, all directories are treated like packages.
2024-02-26T10:09:37,191           ********************************************************************************

2024-02-26T10:09:37,192   !!
2024-02-26T10:09:37,193     check.warn(importable)
2024-02-26T10:09:37,193   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:37,194   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:37,194   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:09:37,195   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:09:37,195   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:09:37,196   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:09:37,196   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:09:37,197   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:09:37,197   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:09:37,198   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:09:37,199   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:09:37,199   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:09:37,200   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:09:37,200   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:09:37,201   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:09:37,201   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:09:37,202   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:09:37,203   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:09:37,203   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:09:37,203   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:09:37,204   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-02-26T10:09:37,204   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-02-26T10:09:37,205   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-02-26T10:09:37,205   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-02-26T10:09:37,206   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,206   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,207   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,207   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,208   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,208   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,209   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,209   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,210   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,210   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,211   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,211   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,212   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,213   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,213   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,214   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,214   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,215   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,216   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,216   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,217   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,217   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,218   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,218   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,219   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,220   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,220   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,221   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,222   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,222   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,223   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,224   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,224   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,225   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,225   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,226   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,226   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,227   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,228   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,228   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,229   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,229   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,230   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,230   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,231   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,232   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,232   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,233   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,233   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,234   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,234   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,234   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,235   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,235   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,236   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,236   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,237   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,237   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,238   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,238   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,239   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,239   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,240   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,240   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,241   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,241   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,242   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,242   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,243   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,244   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,244   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,245   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,245   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,246   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,246   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,247   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,247   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,247   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,248   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,248   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,249   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,249   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,250   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,250   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,251   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,251   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,252   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,252   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,253   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,253   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,254   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,254   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,255   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,256   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,256   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,258   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,260   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,262   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,264   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,266   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,268   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,270   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,272   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,274   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,276   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,278   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,280   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,282   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,284   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,286   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,288   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,290   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,292   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,294   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,296   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,298   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,301   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,303   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,305   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,307   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,309   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,311   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,313   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,315   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,317   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,319   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,321   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,323   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,325   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,327   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,329   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,331   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,334   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,336   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,338   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,339   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,341   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,343   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,346   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,348   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,350   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,352   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,354   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,356   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,358   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,360   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,362   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,364   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,367   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,369   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,371   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,373   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,375   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,377   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,379   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,381   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,383   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,385   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,387   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,389   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,391   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,393   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,395   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,397   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,399   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,401   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,403   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,405   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,407   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,409   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,411   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,414   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,416   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,418   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,420   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,422   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-02-26T10:09:37,424   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:09:37,425   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:09:37,444   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:09:37,447   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:09:37,448   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-02-26T10:09:37,450   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-02-26T10:09:37,452   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-02-26T10:09:37,453   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-02-26T10:09:37,458   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:09:37,460   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:09:37,481   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:09:37,483   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:09:37,484   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:09:37,499   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:09:37,502   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:09:37,504   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:09:37,505   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:09:37,507   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:09:37,509   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-02-26T10:09:37,513   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-02-26T10:09:37,514   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-02-26T10:09:37,516   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:09:37,518   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:09:37,536   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:09:37,539   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:09:37,541   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:09:37,542   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:09:37,545   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:09:37,548   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:09:37,551   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:09:37,553   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-02-26T10:09:37,556   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-02-26T10:09:37,557   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-02-26T10:09:37,561   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,562   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,592   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,595   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,597   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,598   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,620   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,622   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:09:37,624   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,625   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,627   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,629   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,631   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,633   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,635   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-02-26T10:09:37,637   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:09:37,638   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:09:37,640   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:09:37,643   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:09:37,646   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:09:37,648   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:09:37,651   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:09:37,652   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:09:37,672   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:09:37,675   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:09:37,676   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:09:37,702   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:09:37,704   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:09:37,705   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:09:37,727   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:09:37,729   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:09:37,730   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:09:37,752   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:09:37,762   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-02-26T10:09:37,763   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.24'
2024-02-26T10:09:37,763   running build_ext
2024-02-26T10:09:37,772   building 'moleculekit.interactions.hbonds' extension
2024-02-26T10:09:37,773   creating build/temp.linux-armv7l-cpython-311
2024-02-26T10:09:37,773   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-02-26T10:09:37,774   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-02-26T10:09:37,775   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-02-26T10:09:37,776   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-02-26T10:09:38,098   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:09:38,099                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:09:38,099                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:09:38,100                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-02-26T10:09:38,100   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:09:38,101      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:09:38,101         |  ^~~~~~~
2024-02-26T10:10:05,604   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-02-26T10:10:05,605       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19971:68:
2024-02-26T10:10:05,606   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:10:05,606   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-02-26T10:10:05,607         |                                                    ^~~~~~~~~~~~~~~
2024-02-26T10:10:05,608   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-26T10:10:05,609   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-02-26T10:10:05,609   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-02-26T10:10:05,610         |                                                         ^~~~~~~~~~~~~~~
2024-02-26T10:10:08,616   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:10:08,898   building 'moleculekit.interactions.pipi' extension
2024-02-26T10:10:08,899   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-02-26T10:10:08,899   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-02-26T10:10:09,202   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:10:09,202                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:10:09,203                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:10:09,203                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-02-26T10:10:09,204   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:10:09,204      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:10:09,205         |  ^~~~~~~
2024-02-26T10:10:42,200   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:10:42,480   building 'moleculekit.interactions.cationpi' extension
2024-02-26T10:10:42,481   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-02-26T10:10:42,482   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-02-26T10:10:42,798   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:10:42,798                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:10:42,799                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:10:42,800                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-02-26T10:10:42,800   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:10:42,805      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:10:42,805         |  ^~~~~~~
2024-02-26T10:11:15,083   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:11:15,370   building 'moleculekit.interactions.sigmahole' extension
2024-02-26T10:11:15,370   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-02-26T10:11:15,371   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-02-26T10:11:15,682   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:11:15,683                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:11:15,683                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:11:15,684                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-02-26T10:11:15,684   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:11:15,685      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:11:15,685         |  ^~~~~~~
2024-02-26T10:11:47,598   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:11:47,884   building 'moleculekit.wrapping' extension
2024-02-26T10:11:47,885   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-02-26T10:11:47,886   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-02-26T10:11:48,196   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:11:48,197                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:11:48,197                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:11:48,198                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-02-26T10:11:48,199   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:11:48,199      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:11:48,200         |  ^~~~~~~
2024-02-26T10:12:18,575   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:12:18,765   building 'moleculekit.bondguesser_utils' extension
2024-02-26T10:12:18,766   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-02-26T10:12:18,766   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-02-26T10:12:19,071   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:12:19,072                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:12:19,072                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:12:19,073                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-02-26T10:12:19,073   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:12:19,073      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:12:19,074         |  ^~~~~~~
2024-02-26T10:12:21,407   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-02-26T10:12:21,408   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T10:12:21,409   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-02-26T10:12:21,409         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T10:12:21,410   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T10:12:21,410   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-02-26T10:12:21,411         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T10:12:21,411   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T10:12:21,412   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-02-26T10:12:21,413         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T10:12:21,413   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,414   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:12:21,415         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,416   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,416   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:12:21,417         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,417   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,418   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,419         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,419   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,420   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:12:21,421         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,422   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,422   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:12:21,423         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,423   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,424   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:12:21,424         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,425   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,425   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,426         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,426   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,427   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:12:21,427         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,429   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,429         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,430   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,431   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:12:21,431         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,432   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,433   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,434         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,434   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,435   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,436         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,436   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,437   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:12:21,438         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,438   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,439   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:12:21,440         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,441   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,442   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,442         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,443   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T10:12:21,444         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,445   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,445   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,446         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,447   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,447   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T10:12:21,448         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,449   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,449   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,450         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T10:12:21,451   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T10:12:21,452         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,457   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-02-26T10:12:21,458   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:12:21,459   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-02-26T10:12:21,459         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-02-26T10:12:21,460   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:12:21,461   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-02-26T10:12:21,462         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T10:12:47,953   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:12:48,223   building 'moleculekit.atomselect_utils' extension
2024-02-26T10:12:48,224   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-02-26T10:12:48,224   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-02-26T10:12:48,532   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:12:48,533                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:12:48,534                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:12:48,534                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-02-26T10:12:48,535   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:12:48,535      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:12:48,536         |  ^~~~~~~
2024-02-26T10:12:51,062   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-02-26T10:12:51,063   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:12:51,064   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-02-26T10:12:51,065         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T10:12:51,071   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T10:12:51,072   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:12:51,073   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T10:12:51,073         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:12:51,079   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T10:12:51,080   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T10:12:51,081   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T10:12:51,081         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:13:25,351   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:13:25,640   building 'moleculekit.distance_utils' extension
2024-02-26T10:13:25,641   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-02-26T10:13:25,641   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-02-26T10:13:25,953   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:13:25,954                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:13:25,954                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:13:25,955                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-02-26T10:13:25,956   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:13:25,956      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:13:25,957         |  ^~~~~~~
2024-02-26T10:14:04,917   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:14:05,214   building 'moleculekit.occupancy_utils' extension
2024-02-26T10:14:05,215   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-02-26T10:14:05,215   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-02-26T10:14:05,528   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:14:05,529                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:14:05,529                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:14:05,530                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-02-26T10:14:05,531   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:14:05,531      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:14:05,532         |  ^~~~~~~
2024-02-26T10:14:32,664   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:14:32,852   building 'moleculekit.cython_utils' extension
2024-02-26T10:14:32,853   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-02-26T10:14:32,853   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-02-26T10:14:33,191   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:14:33,192                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:14:33,193                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:14:33,193                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-02-26T10:14:33,194   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:14:33,195      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:14:33,196         |  ^~~~~~~
2024-02-26T10:15:03,292   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:15:03,584   building 'moleculekit.xtc' extension
2024-02-26T10:15:03,585   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-02-26T10:15:03,585   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-02-26T10:15:03,586   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-02-26T10:15:03,587   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T10:15:04,232   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,232      66 |         "OK",
2024-02-26T10:15:04,233         |         ^~~~
2024-02-26T10:15:04,234   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,234      67 |         "Header",
2024-02-26T10:15:04,235         |         ^~~~~~~~
2024-02-26T10:15:04,236   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,237      68 |         "String",
2024-02-26T10:15:04,237         |         ^~~~~~~~
2024-02-26T10:15:04,238   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,238      69 |         "Double",
2024-02-26T10:15:04,239         |         ^~~~~~~~
2024-02-26T10:15:04,240   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,240      70 |         "Integer",
2024-02-26T10:15:04,241         |         ^~~~~~~~~
2024-02-26T10:15:04,241   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,242      71 |         "Float",
2024-02-26T10:15:04,243         |         ^~~~~~~
2024-02-26T10:15:04,243   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,244      72 |         "Unsigned integer",
2024-02-26T10:15:04,244         |         ^~~~~~~~~~~~~~~~~~
2024-02-26T10:15:04,245   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,246      73 |         "Compressed 3D coordinate",
2024-02-26T10:15:04,246         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:04,247   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,248      74 |         "Closing file",
2024-02-26T10:15:04,248         |         ^~~~~~~~~~~~~~
2024-02-26T10:15:04,249   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,250      75 |         "Magic number",
2024-02-26T10:15:04,250         |         ^~~~~~~~~~~~~~
2024-02-26T10:15:04,251   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,251      76 |         "Not enough memory",
2024-02-26T10:15:04,252         |         ^~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:04,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,254      77 |         "End of file",
2024-02-26T10:15:04,255         |         ^~~~~~~~~~~~~
2024-02-26T10:15:04,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:04,256      78 |         "File not found"
2024-02-26T10:15:04,257         |         ^~~~~~~~~~~~~~~~
2024-02-26T10:15:04,258   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T10:15:04,258   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,259     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T10:15:04,260         |            ~~~~~^~~~~~
2024-02-26T10:15:04,260   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T10:15:04,261   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,262     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T10:15:04,263         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:15:04,264   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T10:15:04,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,265     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T10:15:04,266         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:04,266   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,267     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-02-26T10:15:04,268         |                             ~~^~~~~~~~~~~~~~
2024-02-26T10:15:04,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,269     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T10:15:04,269         |                             ~~^~~~~~~~~~~~~~~~
2024-02-26T10:15:04,270   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T10:15:04,270   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,271     664 |                 if (lastbits < num_of_bits)
2024-02-26T10:15:04,272         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T10:15:04,272   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T10:15:04,273   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,273     785 |         if(size3>xfp->buf1size)
2024-02-26T10:15:04,274         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:04,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,276     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:04,276         |                          ^
2024-02-26T10:15:04,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,278     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:04,279         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:04,280   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,280     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:04,281         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:04,282   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,283     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:04,283         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:04,284   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,284     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:04,285         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:04,286   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,287     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:04,288         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:04,288   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,289     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:04,289         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:04,290   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:04,290     756 |         int smallidx,  minidx, maxidx;
2024-02-26T10:15:04,291         |                        ^~~~~~
2024-02-26T10:15:04,291   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:04,292     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:15:04,293         |                                ^~~~~~
2024-02-26T10:15:04,293   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:15:04,294     763 |         int errval=1;
2024-02-26T10:15:04,294         |             ^~~~~~
2024-02-26T10:15:04,295   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T10:15:04,295   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,296    1011 |         if(size3>xfp->buf1size)
2024-02-26T10:15:04,296         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:04,297   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,298    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:15:04,298         |                                 ~~~~~~~~^~~~~~~
2024-02-26T10:15:04,299   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,300    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:15:04,301         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:15:04,301   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,302    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:15:04,303         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:15:04,304   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,304    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T10:15:04,305         |                         ^
2024-02-26T10:15:04,306   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,307    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:04,307         |                          ^
2024-02-26T10:15:04,308   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,309    1275 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:15:04,310         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:04,311   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:04,312    1001 |         int errval;
2024-02-26T10:15:04,313         |             ^~~~~~
2024-02-26T10:15:04,313   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T10:15:04,314   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,314    1316 |         if(size3>xfp->buf1size)
2024-02-26T10:15:04,315         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:04,315   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,316    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:04,316         |                          ^
2024-02-26T10:15:04,317   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:04,318    1289 |         int smallidx,  maxidx, minidx;
2024-02-26T10:15:04,318         |                                ^~~~~~
2024-02-26T10:15:04,319   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:04,319    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:15:04,320         |                                ^~~~~~
2024-02-26T10:15:04,321   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:15:04,321    1297 |         int errval=1;
2024-02-26T10:15:04,322         |             ^~~~~~
2024-02-26T10:15:04,322   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T10:15:04,323   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,324    1513 |         if(size3>xfp->buf1size) {
2024-02-26T10:15:04,325         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:04,325   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,326    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T10:15:04,326         |                         ^
2024-02-26T10:15:04,327   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:04,328    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:04,328         |                          ^
2024-02-26T10:15:04,329   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:04,330    1743 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:15:04,330         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:04,331   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:04,332    1504 |         int errval=1;
2024-02-26T10:15:04,332         |             ^~~~~~
2024-02-26T10:15:07,163   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-02-26T10:15:07,433   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-02-26T10:15:08,226   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-02-26T10:15:08,227   moleculekit/fileformats/xtc/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:08,228     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T10:15:08,228         |                                ~~~~~^~~~~~~~
2024-02-26T10:15:08,229   moleculekit/fileformats/xtc/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T10:15:08,229     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-02-26T10:15:08,230         |             ^~~
2024-02-26T10:15:08,237   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-02-26T10:15:08,238   moleculekit/fileformats/xtc/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T10:15:08,238     418 |         int nf3 = nframes * 3;
2024-02-26T10:15:08,239         |             ^~~
2024-02-26T10:15:08,240   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-02-26T10:15:08,241   moleculekit/fileformats/xtc/src/xtc.cpp:548:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:08,242     548 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T10:15:08,243         |                                        ~~~~~^~~~~~~~
2024-02-26T10:15:08,244   moleculekit/fileformats/xtc/src/xtc.cpp:617:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:08,245     617 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T10:15:08,246         |                                        ~~~~~^~~~~~~~
2024-02-26T10:15:08,247   moleculekit/fileformats/xtc/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-02-26T10:15:08,247     491 |         int reading_index = 0;
2024-02-26T10:15:08,248         |             ^~~~~~~~~~~~~
2024-02-26T10:15:08,249   moleculekit/fileformats/xtc/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-02-26T10:15:08,249     492 |         int writing_index = 0;
2024-02-26T10:15:08,250         |             ^~~~~~~~~~~~~
2024-02-26T10:15:09,154   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-02-26T10:15:09,467   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:15:09,467                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:15:09,468                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:15:09,469                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-02-26T10:15:09,469   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:15:09,470      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:15:09,470         |  ^~~~~~~
2024-02-26T10:15:33,416   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:15:33,698   building 'moleculekit.trr' extension
2024-02-26T10:15:33,699   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-02-26T10:15:33,812   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T10:15:34,451   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,452      66 |         "OK",
2024-02-26T10:15:34,453         |         ^~~~
2024-02-26T10:15:34,453   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,454      67 |         "Header",
2024-02-26T10:15:34,455         |         ^~~~~~~~
2024-02-26T10:15:34,456   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,456      68 |         "String",
2024-02-26T10:15:34,457         |         ^~~~~~~~
2024-02-26T10:15:34,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,458      69 |         "Double",
2024-02-26T10:15:34,459         |         ^~~~~~~~
2024-02-26T10:15:34,460   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,460      70 |         "Integer",
2024-02-26T10:15:34,461         |         ^~~~~~~~~
2024-02-26T10:15:34,462   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,463      71 |         "Float",
2024-02-26T10:15:34,463         |         ^~~~~~~
2024-02-26T10:15:34,464   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,465      72 |         "Unsigned integer",
2024-02-26T10:15:34,466         |         ^~~~~~~~~~~~~~~~~~
2024-02-26T10:15:34,466   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,467      73 |         "Compressed 3D coordinate",
2024-02-26T10:15:34,468         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:34,468   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,469      74 |         "Closing file",
2024-02-26T10:15:34,469         |         ^~~~~~~~~~~~~~
2024-02-26T10:15:34,470   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,470      75 |         "Magic number",
2024-02-26T10:15:34,471         |         ^~~~~~~~~~~~~~
2024-02-26T10:15:34,472   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,472      76 |         "Not enough memory",
2024-02-26T10:15:34,473         |         ^~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:34,473   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,474      77 |         "End of file",
2024-02-26T10:15:34,474         |         ^~~~~~~~~~~~~
2024-02-26T10:15:34,475   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T10:15:34,476      78 |         "File not found"
2024-02-26T10:15:34,476         |         ^~~~~~~~~~~~~~~~
2024-02-26T10:15:34,477   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T10:15:34,478   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,479     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T10:15:34,479         |            ~~~~~^~~~~~
2024-02-26T10:15:34,480   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T10:15:34,481   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,481     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T10:15:34,482         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:15:34,483   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T10:15:34,484   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,484     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T10:15:34,485         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:34,486   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,486     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-02-26T10:15:34,487         |                             ~~^~~~~~~~~~~~~~
2024-02-26T10:15:34,488   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,488     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T10:15:34,489         |                             ~~^~~~~~~~~~~~~~~~
2024-02-26T10:15:34,490   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T10:15:34,490   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,491     664 |                 if (lastbits < num_of_bits)
2024-02-26T10:15:34,492         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T10:15:34,493   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T10:15:34,493   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,494     785 |         if(size3>xfp->buf1size)
2024-02-26T10:15:34,494         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:34,494   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,495     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:34,495         |                          ^
2024-02-26T10:15:34,496   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,497     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:34,497         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:34,498   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,498     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:34,499         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:34,500   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,501     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:34,502         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:34,502   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,503     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:34,504         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:34,504   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,505     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:34,506         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:34,506   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,507     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-02-26T10:15:34,508         |                                    ~~~~~~~~~^~~~~~~~
2024-02-26T10:15:34,508   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:34,509     756 |         int smallidx,  minidx, maxidx;
2024-02-26T10:15:34,510         |                        ^~~~~~
2024-02-26T10:15:34,510   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:34,511     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:15:34,512         |                                ^~~~~~
2024-02-26T10:15:34,513   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:15:34,513     763 |         int errval=1;
2024-02-26T10:15:34,514         |             ^~~~~~
2024-02-26T10:15:34,515   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T10:15:34,515   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,516    1011 |         if(size3>xfp->buf1size)
2024-02-26T10:15:34,516         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:34,517   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,517    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:15:34,518         |                                 ~~~~~~~~^~~~~~~
2024-02-26T10:15:34,519   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,519    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:15:34,520         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:15:34,520   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,521    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T10:15:34,521         |                           ~~~~~~~~^~~~~~~
2024-02-26T10:15:34,522   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,523    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T10:15:34,524         |                         ^
2024-02-26T10:15:34,524   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,525    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:34,526         |                          ^
2024-02-26T10:15:34,527   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,527    1275 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:15:34,528         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:34,529   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:34,529    1001 |         int errval;
2024-02-26T10:15:34,530         |             ^~~~~~
2024-02-26T10:15:34,531   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T10:15:34,531   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,532    1316 |         if(size3>xfp->buf1size)
2024-02-26T10:15:34,533         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:34,533   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,534    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:34,535         |                          ^
2024-02-26T10:15:34,536   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:34,536    1289 |         int smallidx,  maxidx, minidx;
2024-02-26T10:15:34,537         |                                ^~~~~~
2024-02-26T10:15:34,538   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:34,538    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T10:15:34,539         |                                ^~~~~~
2024-02-26T10:15:34,540   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T10:15:34,540    1297 |         int errval=1;
2024-02-26T10:15:34,541         |             ^~~~~~
2024-02-26T10:15:34,541   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T10:15:34,542   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,543    1513 |         if(size3>xfp->buf1size) {
2024-02-26T10:15:34,543         |            ~~~~~^~~~~~~~~~~~~~
2024-02-26T10:15:34,544   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,544    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T10:15:34,545         |                         ^
2024-02-26T10:15:34,546   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:15:34,546    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T10:15:34,547         |                          ^
2024-02-26T10:15:34,548   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:15:34,548    1743 |         if(tmp==(unsigned int)buf2[0])
2024-02-26T10:15:34,549         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:15:34,550   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T10:15:34,551    1504 |         int errval=1;
2024-02-26T10:15:34,552         |             ^~~~~~
2024-02-26T10:15:37,403   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-02-26T10:15:37,504   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-02-26T10:15:37,505   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T10:15:37,506     111 |         if (slen != strlen(version)+1)
2024-02-26T10:15:37,506         |                  ^~
2024-02-26T10:15:37,507   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T10:15:37,508     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-02-26T10:15:37,508         |                                              ^~
2024-02-26T10:15:38,209   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-02-26T10:15:38,596   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:15:38,597                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:15:38,597                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:15:38,598                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-02-26T10:15:38,598   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:15:38,599      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:15:38,599         |  ^~~~~~~
2024-02-26T10:15:39,381   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-02-26T10:15:39,396   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-02-26T10:15:39,397   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-02-26T10:15:39,397         |                                     ^~
2024-02-26T10:16:02,926   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-02-26T10:16:02,927   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:02,927    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T10:16:02,928         |                                        ^~~~~~~~~~~~~~~
2024-02-26T10:16:02,941   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T10:16:02,942   14242 |   int __pyx_v_status;
2024-02-26T10:16:02,943         |       ^~~~~~~~~~~~~~
2024-02-26T10:16:14,618   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-02-26T10:16:14,629   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,630   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T10:16:14,630         |                   ^
2024-02-26T10:16:14,639   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-02-26T10:16:14,640   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:16:14,640         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,650   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,651   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:16:14,651         |                   ^
2024-02-26T10:16:14,660   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-02-26T10:16:14,661   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:16:14,661         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,662   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,663    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T10:16:14,664         |                                                                                               ^
2024-02-26T10:16:14,672   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-02-26T10:16:14,672   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:16:14,673         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,683   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,683   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-02-26T10:16:14,684         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:16:14,693   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-02-26T10:16:14,693   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T10:16:14,694         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,703   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,704   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T10:16:14,704         |                   ^
2024-02-26T10:16:14,713   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-02-26T10:16:14,714   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:16:14,714         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,724   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,725   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:16:14,725         |                   ^
2024-02-26T10:16:14,734   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-02-26T10:16:14,735   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:16:14,735         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,736   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,737    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T10:16:14,738         |                                                                                               ^
2024-02-26T10:16:14,746   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-02-26T10:16:14,747   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:16:14,747         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,757   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,758   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-02-26T10:16:14,758         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T10:16:14,767   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-02-26T10:16:14,768   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T10:16:14,769         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,778   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,779   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:16:14,780         |                 ^
2024-02-26T10:16:14,789   moleculekit/fileformats/xtc/trr.c:10095:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-02-26T10:16:14,789   10095 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-02-26T10:16:14,790         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,800   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,800   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T10:16:14,801         |                 ^
2024-02-26T10:16:14,810   moleculekit/fileformats/xtc/trr.c:10095:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-02-26T10:16:14,811   10095 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-02-26T10:16:14,811         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,821   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,822   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:16:14,822         |                   ^
2024-02-26T10:16:14,831   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-02-26T10:16:14,832   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-02-26T10:16:14,832         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,842   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,843   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T10:16:14,844         |                   ^
2024-02-26T10:16:14,852   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-02-26T10:16:14,853   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-02-26T10:16:14,854         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,863   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,864   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T10:16:14,865         |                   ^
2024-02-26T10:16:14,874   moleculekit/fileformats/xtc/trr.c:10075:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-02-26T10:16:14,874   10075 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-02-26T10:16:14,875         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:14,885   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:14,885   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T10:16:14,886         |                   ^
2024-02-26T10:16:14,895   moleculekit/fileformats/xtc/trr.c:10075:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-02-26T10:16:14,896   10075 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-02-26T10:16:14,896         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T10:16:21,482   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:16:21,635   building 'moleculekit.dcd' extension
2024-02-26T10:16:21,636   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-02-26T10:16:21,637   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-02-26T10:16:21,638   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-02-26T10:16:22,043   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:16:22,043                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:16:22,044                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:16:22,044                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-02-26T10:16:22,045   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:16:22,045      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:16:22,046         |  ^~~~~~~
2024-02-26T10:16:23,332   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-02-26T10:16:23,333                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-02-26T10:16:23,334   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,334     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T10:16:23,335         |            ^~~~~~~~~~~~~
2024-02-26T10:16:23,336   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,337     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T10:16:23,337         |            ^~~~~~~~~~~~~~
2024-02-26T10:16:23,338   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,338     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-02-26T10:16:23,339         |            ^~~~~~~~~~~~~~~
2024-02-26T10:16:23,340   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,340     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-02-26T10:16:23,341         |                   ^~~~~~~~~
2024-02-26T10:16:23,341   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,342     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-02-26T10:16:23,343         |                   ^~~~~~~~~
2024-02-26T10:16:23,344   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,345     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-02-26T10:16:23,346         |                   ^~~~~~~~~
2024-02-26T10:16:23,347   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,347     394 | static int fio_fclose(fio_fd fd) {
2024-02-26T10:16:23,348         |            ^~~~~~~~~~
2024-02-26T10:16:23,348   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-02-26T10:16:23,349     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-02-26T10:16:23,349         |            ^~~~~~~~
2024-02-26T10:16:37,781   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-02-26T10:16:37,781   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:37,782    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T10:16:37,782         |                                        ^~~~~~~~~~~~~~~
2024-02-26T10:16:37,789   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T10:16:37,790    8004 |   int __pyx_v_i;
2024-02-26T10:16:37,790         |       ^~~~~~~~~
2024-02-26T10:16:41,186   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-02-26T10:16:41,405   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-02-26T10:16:41,405   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:16:41,406     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T10:16:41,407         |                                                       ^~
2024-02-26T10:16:41,407   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:16:41,408     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T10:16:41,409         |                                                      ^~
2024-02-26T10:16:41,410   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:16:41,410     194 |     if (input_integer[0] != dcdcordmagic)
2024-02-26T10:16:41,411         |                          ^~
2024-02-26T10:16:41,412   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:16:41,412     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T10:16:41,413         |                                               ^~
2024-02-26T10:16:41,414   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T10:16:41,414     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T10:16:41,415         |                                               ^~
2024-02-26T10:16:41,417   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-02-26T10:16:41,418   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:16:41,419     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-02-26T10:16:41,420         |                       ^~
2024-02-26T10:16:41,421   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T10:16:41,421     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-02-26T10:16:41,422         |                                                 ^~
2024-02-26T10:16:41,447   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-02-26T10:16:41,448   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-02-26T10:16:41,449   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-02-26T10:16:41,449      96 | static void swap2_aligned(void *v, long ndata) {
2024-02-26T10:16:41,450         |             ^~~~~~~~~~~~~
2024-02-26T10:16:41,450   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-02-26T10:16:41,451      32 | static void swap2_unaligned(void *v, long ndata) {
2024-02-26T10:16:41,451         |             ^~~~~~~~~~~~~~~
2024-02-26T10:16:41,452   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-02-26T10:16:41,452   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T10:16:41,453     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T10:16:41,454         |            ^~~~~~~~~~~~~
2024-02-26T10:16:41,454   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T10:16:41,455     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T10:16:41,455         |            ^~~~~~~~~~~~~~
2024-02-26T10:16:42,739   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:16:42,868   building 'moleculekit.binpos' extension
2024-02-26T10:16:42,868   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-02-26T10:16:42,869   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-02-26T10:16:42,871   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-02-26T10:16:43,264   In file included from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T10:16:43,265                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T10:16:43,266                    from /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T10:16:43,267                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-02-26T10:16:43,267   /tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T10:16:43,268      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T10:16:43,269         |  ^~~~~~~
2024-02-26T10:16:57,908   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-02-26T10:16:57,908       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7486:13:
2024-02-26T10:16:57,915   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:57,916    8027 |   if (__pyx_t_1) {
2024-02-26T10:16:57,917         |      ^
2024-02-26T10:16:57,917   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-02-26T10:16:57,923   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T10:16:57,923    7504 |   int __pyx_v_status;
2024-02-26T10:16:57,924         |       ^~~~~~~~~~~~~~
2024-02-26T10:16:57,925   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-02-26T10:16:57,925    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T10:16:57,926         |                                        ^~~~~~~~~~~~~~~
2024-02-26T10:16:57,932   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T10:16:57,933    7501 |   int __pyx_v_i;
2024-02-26T10:16:57,933         |       ^~~~~~~~~
2024-02-26T10:17:01,398   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-02-26T10:17:01,729   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:17:01,863   building 'moleculekit.tmalign' extension
2024-02-26T10:17:01,864   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-02-26T10:17:01,865   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-02-26T10:17:01,867   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-02-26T10:17:35,956   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-me8oktgj/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-02-26T10:17:58,807   In file included from /usr/include/c++/12/vector:70,
2024-02-26T10:17:58,807                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-26T10:17:58,808   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-02-26T10:17:58,809   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-02-26T10:17:58,810     439 |       vector<_Tp, _Alloc>::
2024-02-26T10:17:58,811         |       ^~~~~~~~~~~~~~~~~~~
2024-02-26T10:17:59,614   In file included from /usr/include/c++/12/vector:64:
2024-02-26T10:17:59,614   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-02-26T10:17:59,615       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20761:32,
2024-02-26T10:17:59,615       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-02-26T10:17:59,616   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T10:17:59,617    1287 |           _M_realloc_insert(end(), __x);
2024-02-26T10:17:59,617         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:17:59,618   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-02-26T10:17:59,618       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20775:33,
2024-02-26T10:17:59,619       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-02-26T10:17:59,619   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T10:17:59,620    1287 |           _M_realloc_insert(end(), __x);
2024-02-26T10:17:59,621         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:17:59,622   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-02-26T10:17:59,622       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20860:34,
2024-02-26T10:17:59,623       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-02-26T10:17:59,624   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T10:17:59,624    1287 |           _M_realloc_insert(end(), __x);
2024-02-26T10:17:59,625         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T10:18:02,001   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-02-26T10:18:02,379   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-02-26T10:18:02,380   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.24'
2024-02-26T10:18:02,381   installing to build/bdist.linux-armv7l/wheel
2024-02-26T10:18:02,381   running install
2024-02-26T10:18:02,405   running install_lib
2024-02-26T10:18:02,411   creating build/bdist.linux-armv7l
2024-02-26T10:18:02,412   creating build/bdist.linux-armv7l/wheel
2024-02-26T10:18:02,414   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:02,416   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:18:02,418   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:18:02,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:18:02,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:18:02,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T10:18:02,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:02,430   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,432   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T10:18:02,433   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T10:18:02,435   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T10:18:02,437   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,440   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,445   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,450   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,453   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,456   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,458   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,460   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,466   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,469   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,472   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T10:18:02,476   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:18:02,477   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T10:18:02,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T10:18:02,481   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:18:02,681   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:18:02,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T10:18:02,686   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-02-26T10:18:02,690   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,696   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,708   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,722   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,728   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,737   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,739   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,742   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,757   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,759   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,766   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,768   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,782   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,784   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,791   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,793   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,796   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,798   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,800   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,802   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,818   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,829   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,844   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,847   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,859   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,861   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,863   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,869   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,878   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,881   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,890   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,892   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,894   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,897   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,901   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,904   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,910   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,912   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,914   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,918   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,919   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,921   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,923   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,925   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,927   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,929   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,931   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,933   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,938   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,940   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,941   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,943   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,945   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,947   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,949   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,950   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,952   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,954   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,956   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,958   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,960   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,962   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,964   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,966   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,969   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,971   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,973   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,975   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,976   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,980   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,982   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,985   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,987   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,991   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,993   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,995   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,997   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:02,999   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,001   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,002   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,006   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,008   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,010   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,012   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,014   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,015   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,017   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,019   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,021   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,024   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,025   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,029   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,031   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,033   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,037   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,039   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,040   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T10:18:03,047   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,049   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,064   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,068   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,071   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,099   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,101   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T10:18:03,102   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T10:18:03,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T10:18:03,125   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T10:18:03,127   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:18:03,128   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:18:03,131   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:18:03,133   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:18:03,135   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T10:18:03,138   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:18:03,140   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:18:03,143   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:18:03,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:18:03,150   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T10:18:03,152   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T10:18:03,154   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T10:18:03,156   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T10:18:03,159   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T10:18:03,161   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,186   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,188   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,199   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,201   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,204   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,207   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,211   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,213   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,215   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,218   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,219   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,222   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T10:18:03,224   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,257   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T10:18:03,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T10:18:03,261   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T10:18:03,281   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,301   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,324   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,328   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:18:03,329   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:18:03,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:18:03,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T10:18:03,338   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,362   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,370   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:18:03,371   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:18:03,374   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T10:18:03,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T10:18:03,382   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:18:03,385   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T10:18:03,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T10:18:03,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T10:18:03,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,460   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,462   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,464   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,499   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T10:18:03,500   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T10:18:03,502   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T10:18:03,520   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T10:18:03,521   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T10:18:03,524   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T10:18:03,549   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T10:18:03,550   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T10:18:03,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T10:18:03,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,580   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:18:03,581   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:18:03,584   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:18:03,585   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:18:03,589   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T10:18:03,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T10:18:03,593   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:18:03,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:18:03,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:18:03,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T10:18:03,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:18:03,602   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T10:18:03,619   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:18:03,621   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T10:18:03,623   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,631   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:18:03,632   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:18:03,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:18:03,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:18:03,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:18:03,641   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T10:18:03,645   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,689   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,690   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,692   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T10:18:03,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T10:18:03,704   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:18:03,705   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T10:18:03,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T10:18:03,709   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:18:03,712   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:18:03,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:18:03,716   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:18:03,718   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:18:03,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:18:03,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T10:18:03,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:18:03,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T10:18:03,746   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,747   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,776   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,802   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T10:18:03,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T10:18:03,824   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T10:18:03,827   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T10:18:03,828   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T10:18:03,852   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T10:18:03,854   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T10:18:03,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T10:18:03,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T10:18:03,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,903   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,906   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T10:18:03,907   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T10:18:03,909   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T10:18:03,935   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T10:18:03,956   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,958   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,962   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,964   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T10:18:03,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T10:18:03,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T10:18:03,987   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:03,991   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:04,037   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,039   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:18:04,040   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:18:04,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:18:04,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:18:04,046   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T10:18:04,049   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,051   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,053   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,055   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,057   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T10:18:04,062   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:04,064   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T10:18:04,069   running install_egg_info
2024-02-26T10:18:04,074   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.24-py3.11.egg-info
2024-02-26T10:18:04,086   running install_scripts
2024-02-26T10:18:04,136   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.24.dist-info/WHEEL
2024-02-26T10:18:04,139   creating '/tmp/pip-wheel-nyiu0sk5/.tmp-dyy0n9l7/moleculekit-1.8.24-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-26T10:18:04,142   adding 'moleculekit/__init__.py'
2024-02-26T10:18:04,143   adding 'moleculekit/_version.py'
2024-02-26T10:18:04,145   adding 'moleculekit/align.py'
2024-02-26T10:18:04,505   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:04,664   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:04,670   adding 'moleculekit/bondguesser.py'
2024-02-26T10:18:04,914   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:04,923   adding 'moleculekit/config.py'
2024-02-26T10:18:05,184   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:05,346   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:05,352   adding 'moleculekit/dihedral.py'
2024-02-26T10:18:05,354   adding 'moleculekit/distance.py'
2024-02-26T10:18:05,666   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:05,677   adding 'moleculekit/home.py'
2024-02-26T10:18:05,678   adding 'moleculekit/logging.ini'
2024-02-26T10:18:05,692   adding 'moleculekit/molecule.py'
2024-02-26T10:18:05,922   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:05,930   adding 'moleculekit/opm.py'
2024-02-26T10:18:05,933   adding 'moleculekit/periodictable.py'
2024-02-26T10:18:05,934   adding 'moleculekit/pymolgraphics.py'
2024-02-26T10:18:05,935   adding 'moleculekit/rcsb.py'
2024-02-26T10:18:05,937   adding 'moleculekit/rdkitintegration.py'
2024-02-26T10:18:05,951   adding 'moleculekit/readers.py'
2024-02-26T10:18:06,550   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:06,854   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:06,865   adding 'moleculekit/util.py'
2024-02-26T10:18:06,867   adding 'moleculekit/version.py'
2024-02-26T10:18:06,868   adding 'moleculekit/viewer.py'
2024-02-26T10:18:06,870   adding 'moleculekit/vmd_wrapper'
2024-02-26T10:18:06,872   adding 'moleculekit/vmdgraphics.py'
2024-02-26T10:18:06,874   adding 'moleculekit/vmdviewer.py'
2024-02-26T10:18:07,128   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:07,142   adding 'moleculekit/writers.py'
2024-02-26T10:18:07,403   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:07,412   adding 'moleculekit/atomselect/__init__.py'
2024-02-26T10:18:07,414   adding 'moleculekit/atomselect/analyze.py'
2024-02-26T10:18:07,416   adding 'moleculekit/atomselect/atomselect.py'
2024-02-26T10:18:07,418   adding 'moleculekit/atomselect/languageparser.py'
2024-02-26T10:18:07,521   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-02-26T10:18:07,532   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-02-26T10:18:07,623   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-02-26T10:18:07,632   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-02-26T10:18:07,720   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-02-26T10:18:07,729   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-02-26T10:18:07,832   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-02-26T10:18:07,842   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-02-26T10:18:07,844   adding 'moleculekit/fileformats/__init__.py'
2024-02-26T10:18:07,849   adding 'moleculekit/fileformats/netcdf.py'
2024-02-26T10:18:07,850   adding 'moleculekit/fileformats/utils.py'
2024-02-26T10:18:07,911   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-02-26T10:18:07,918   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-02-26T10:18:07,920   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-02-26T10:18:07,921   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-02-26T10:18:07,922   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-02-26T10:18:07,927   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-02-26T10:18:07,930   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-02-26T10:18:07,993   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-02-26T10:18:08,000   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-02-26T10:18:08,002   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-02-26T10:18:08,003   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-02-26T10:18:08,005   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-02-26T10:18:08,007   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-02-26T10:18:08,008   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-02-26T10:18:08,013   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-02-26T10:18:08,018   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-02-26T10:18:08,113   adding 'moleculekit/fileformats/xtc/trr.c'
2024-02-26T10:18:08,124   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-02-26T10:18:08,125   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-02-26T10:18:08,126   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-02-26T10:18:08,215   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-02-26T10:18:08,223   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-02-26T10:18:08,224   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-02-26T10:18:08,226   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-02-26T10:18:08,227   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-02-26T10:18:08,230   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-02-26T10:18:08,231   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-02-26T10:18:08,233   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-02-26T10:18:08,234   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-02-26T10:18:08,236   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-02-26T10:18:08,242   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-02-26T10:18:08,245   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-02-26T10:18:08,246   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-02-26T10:18:08,248   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-02-26T10:18:08,250   adding 'moleculekit/interactions/__init__.py'
2024-02-26T10:18:08,532   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:08,798   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:08,810   adding 'moleculekit/interactions/interactions.py'
2024-02-26T10:18:09,086   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:09,369   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-02-26T10:18:09,470   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-02-26T10:18:09,479   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-02-26T10:18:09,569   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-02-26T10:18:09,577   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-02-26T10:18:09,668   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-02-26T10:18:09,677   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-02-26T10:18:09,768   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-02-26T10:18:09,777   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-02-26T10:18:09,864   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-02-26T10:18:09,872   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-02-26T10:18:09,873   adding 'moleculekit/pdbx/__init__.py'
2024-02-26T10:18:09,877   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-02-26T10:18:09,879   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-02-26T10:18:09,882   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-02-26T10:18:09,883   adding 'moleculekit/pdbx/reader/__init__.py'
2024-02-26T10:18:09,885   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-02-26T10:18:09,886   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-02-26T10:18:09,888   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-02-26T10:18:09,889   adding 'moleculekit/pdbx/tests/__init__.py'
2024-02-26T10:18:09,891   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-02-26T10:18:09,892   adding 'moleculekit/pdbx/writer/__init__.py'
2024-02-26T10:18:09,893   adding 'moleculekit/ply/__init__.py'
2024-02-26T10:18:09,897   adding 'moleculekit/ply/lex.py'
2024-02-26T10:18:09,909   adding 'moleculekit/ply/yacc.py'
2024-02-26T10:18:09,911   adding 'moleculekit/projections/__init__.py'
2024-02-26T10:18:09,913   adding 'moleculekit/projections/metriccoordinate.py'
2024-02-26T10:18:09,916   adding 'moleculekit/projections/metricdihedral.py'
2024-02-26T10:18:09,920   adding 'moleculekit/projections/metricdistance.py'
2024-02-26T10:18:09,922   adding 'moleculekit/projections/metricfluctuation.py'
2024-02-26T10:18:09,924   adding 'moleculekit/projections/metricgyration.py'
2024-02-26T10:18:09,927   adding 'moleculekit/projections/metricplumed2.py'
2024-02-26T10:18:09,929   adding 'moleculekit/projections/metricrmsd.py'
2024-02-26T10:18:09,931   adding 'moleculekit/projections/metricsasa.py'
2024-02-26T10:18:09,933   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-02-26T10:18:09,935   adding 'moleculekit/projections/metricshell.py'
2024-02-26T10:18:09,937   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-02-26T10:18:09,938   adding 'moleculekit/projections/metrictmscore.py'
2024-02-26T10:18:09,939   adding 'moleculekit/projections/projection.py'
2024-02-26T10:18:09,941   adding 'moleculekit/projections/util.py'
2024-02-26T10:18:09,943   adding 'moleculekit/share/ALA.cif'
2024-02-26T10:18:09,944   adding 'moleculekit/share/backbone.cif'
2024-02-26T10:18:11,241   adding 'moleculekit/share/opm_sequences.json'
2024-02-26T10:18:11,326   adding 'moleculekit/share/atomselect/atomselect.json'
2024-02-26T10:18:11,331   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-02-26T10:18:11,332   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-02-26T10:18:11,333   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-02-26T10:18:11,334   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-02-26T10:18:11,335   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-02-26T10:18:11,337   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-02-26T10:18:11,338   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-02-26T10:18:11,339   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-02-26T10:18:11,341   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-02-26T10:18:11,342   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-02-26T10:18:11,343   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-02-26T10:18:11,344   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-02-26T10:18:11,345   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-02-26T10:18:11,346   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-02-26T10:18:11,347   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-02-26T10:18:11,348   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-02-26T10:18:11,350   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-02-26T10:18:11,351   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-02-26T10:18:11,352   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-02-26T10:18:11,353   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-02-26T10:18:11,354   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-02-26T10:18:11,356   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-02-26T10:18:11,357   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-02-26T10:18:11,358   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-02-26T10:18:11,359   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-02-26T10:18:11,360   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-02-26T10:18:11,362   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-02-26T10:18:11,363   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-02-26T10:18:11,364   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-02-26T10:18:11,365   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-02-26T10:18:11,366   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-02-26T10:18:11,367   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-02-26T10:18:11,368   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-02-26T10:18:11,370   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-02-26T10:18:11,371   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-02-26T10:18:11,372   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-02-26T10:18:11,373   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-02-26T10:18:11,375   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-02-26T10:18:11,376   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-02-26T10:18:11,377   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-02-26T10:18:11,378   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-02-26T10:18:11,380   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-02-26T10:18:11,381   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-02-26T10:18:11,382   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-02-26T10:18:11,383   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-02-26T10:18:11,385   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-02-26T10:18:11,386   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-02-26T10:18:11,387   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-02-26T10:18:11,388   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-02-26T10:18:11,390   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-02-26T10:18:11,391   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-02-26T10:18:11,392   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-02-26T10:18:11,393   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-02-26T10:18:11,396   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-02-26T10:18:11,397   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-02-26T10:18:11,398   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-02-26T10:18:11,399   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-02-26T10:18:11,401   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-02-26T10:18:11,402   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-02-26T10:18:11,403   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-02-26T10:18:11,404   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-02-26T10:18:11,405   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-02-26T10:18:11,406   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-02-26T10:18:11,407   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-02-26T10:18:11,409   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-02-26T10:18:11,410   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-02-26T10:18:11,411   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-02-26T10:18:11,412   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-02-26T10:18:11,413   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-02-26T10:18:11,414   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-02-26T10:18:11,415   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-02-26T10:18:11,416   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-02-26T10:18:11,418   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-02-26T10:18:11,419   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-02-26T10:18:11,420   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-02-26T10:18:11,421   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-02-26T10:18:11,422   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-02-26T10:18:11,423   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-02-26T10:18:11,424   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-02-26T10:18:11,426   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-02-26T10:18:11,427   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-02-26T10:18:11,428   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-02-26T10:18:11,429   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-02-26T10:18:11,431   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-02-26T10:18:11,432   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-02-26T10:18:11,433   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-02-26T10:18:11,434   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-02-26T10:18:11,435   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-02-26T10:18:11,437   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-02-26T10:18:11,438   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-02-26T10:18:11,439   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-02-26T10:18:11,440   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-02-26T10:18:11,442   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-02-26T10:18:11,443   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-02-26T10:18:11,444   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-02-26T10:18:11,445   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-02-26T10:18:11,447   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-02-26T10:18:11,448   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-02-26T10:18:11,449   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-02-26T10:18:11,450   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-02-26T10:18:11,452   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-02-26T10:18:11,453   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-02-26T10:18:11,454   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-02-26T10:18:11,456   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-02-26T10:18:11,457   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-02-26T10:18:11,458   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-02-26T10:18:11,459   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-02-26T10:18:11,460   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-02-26T10:18:11,462   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-02-26T10:18:11,463   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-02-26T10:18:11,464   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-02-26T10:18:11,465   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-02-26T10:18:11,467   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-02-26T10:18:11,468   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-02-26T10:18:11,469   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-02-26T10:18:11,470   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-02-26T10:18:11,471   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-02-26T10:18:11,472   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-02-26T10:18:11,473   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-02-26T10:18:11,474   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-02-26T10:18:11,476   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-02-26T10:18:11,477   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-02-26T10:18:11,478   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-02-26T10:18:11,479   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-02-26T10:18:11,480   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-02-26T10:18:11,482   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-02-26T10:18:11,483   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-02-26T10:18:11,484   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-02-26T10:18:11,485   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-02-26T10:18:11,486   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-02-26T10:18:11,487   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-02-26T10:18:11,488   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-02-26T10:18:11,490   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-02-26T10:18:11,491   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-02-26T10:18:11,492   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-02-26T10:18:11,493   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-02-26T10:18:11,494   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-02-26T10:18:11,496   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-02-26T10:18:11,497   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-02-26T10:18:11,498   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-02-26T10:18:11,499   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-02-26T10:18:11,500   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-02-26T10:18:11,502   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-02-26T10:18:11,503   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-02-26T10:18:11,504   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-02-26T10:18:11,505   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-02-26T10:18:11,506   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-02-26T10:18:11,508   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-02-26T10:18:11,509   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-02-26T10:18:11,510   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-02-26T10:18:11,511   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-02-26T10:18:11,513   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-02-26T10:18:11,514   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-02-26T10:18:11,515   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-02-26T10:18:11,517   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-02-26T10:18:11,518   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-02-26T10:18:11,519   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-02-26T10:18:11,520   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-02-26T10:18:11,522   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-02-26T10:18:11,523   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-02-26T10:18:11,524   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-02-26T10:18:11,526   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-02-26T10:18:11,527   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-02-26T10:18:11,528   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-02-26T10:18:11,529   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-02-26T10:18:11,530   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-02-26T10:18:11,531   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-02-26T10:18:11,533   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-02-26T10:18:11,534   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-02-26T10:18:11,535   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-02-26T10:18:11,536   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-02-26T10:18:11,537   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-02-26T10:18:11,538   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-02-26T10:18:11,539   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-02-26T10:18:11,541   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-02-26T10:18:11,542   adding 'moleculekit/smallmol/__init__.py'
2024-02-26T10:18:11,547   adding 'moleculekit/smallmol/smallmol.py'
2024-02-26T10:18:11,550   adding 'moleculekit/smallmol/smallmollib.py'
2024-02-26T10:18:11,551   adding 'moleculekit/smallmol/test_smallmol.py'
2024-02-26T10:18:11,553   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-02-26T10:18:11,555   adding 'moleculekit/smallmol/util.py'
2024-02-26T10:18:11,557   adding 'moleculekit/smallmol/tools/__init__.py'
2024-02-26T10:18:11,559   adding 'moleculekit/smallmol/tools/clustering.py'
2024-02-26T10:18:11,560   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-02-26T10:18:11,562   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-02-26T10:18:11,651   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-02-26T10:18:11,659   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-02-26T10:18:11,661   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-02-26T10:18:11,662   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-02-26T10:18:11,679   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-02-26T10:18:11,682   adding 'moleculekit/tools/__init__.py'
2024-02-26T10:18:11,684   adding 'moleculekit/tools/atomtyper.py'
2024-02-26T10:18:11,686   adding 'moleculekit/tools/autosegment.py'
2024-02-26T10:18:11,688   adding 'moleculekit/tools/crystalpacking.py'
2024-02-26T10:18:11,692   adding 'moleculekit/tools/detect.py'
2024-02-26T10:18:11,694   adding 'moleculekit/tools/docking.py'
2024-02-26T10:18:11,695   adding 'moleculekit/tools/graphalignment.py'
2024-02-26T10:18:11,697   adding 'moleculekit/tools/hhblitsprofile.py'
2024-02-26T10:18:11,698   adding 'moleculekit/tools/modelling.py'
2024-02-26T10:18:11,700   adding 'moleculekit/tools/moleculechecks.py'
2024-02-26T10:18:11,706   adding 'moleculekit/tools/preparation.py'
2024-02-26T10:18:11,709   adding 'moleculekit/tools/preparation_customres.py'
2024-02-26T10:18:11,710   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-02-26T10:18:11,713   adding 'moleculekit/tools/voxeldescriptors.py'
2024-02-26T10:18:11,715   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-02-26T10:18:11,717   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-02-26T10:18:11,808   adding 'moleculekit/wrapping/wrapping.cpp'
2024-02-26T10:18:11,817   adding 'moleculekit/wrapping/wrapping.pyx'
2024-02-26T10:18:11,819   adding 'moleculekit-1.8.24.dist-info/LICENSE'
2024-02-26T10:18:11,820   adding 'moleculekit-1.8.24.dist-info/METADATA'
2024-02-26T10:18:11,821   adding 'moleculekit-1.8.24.dist-info/WHEEL'
2024-02-26T10:18:11,822   adding 'moleculekit-1.8.24.dist-info/top_level.txt'
2024-02-26T10:18:11,827   adding 'moleculekit-1.8.24.dist-info/RECORD'
2024-02-26T10:18:11,987   removing build/bdist.linux-armv7l/wheel
2024-02-26T10:18:12,289   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-02-26T10:18:12,617   Created wheel for moleculekit: filename=moleculekit-1.8.24-cp311-cp311-linux_armv7l.whl size=15251600 sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795
2024-02-26T10:18:12,618   Stored in directory: /tmp/pip-ephem-wheel-cache-3xuuhfjv/wheels/96/5e/e4/24c4d08789c91163e551825b8ccdcea91d274662ab1f2f83ce
2024-02-26T10:18:12,644 Successfully built moleculekit
2024-02-26T10:18:13,008 Removed build tracker: '/tmp/pip-build-tracker-fyvwymmw'