2024-02-26T12:06:46,905 Created temporary directory: /tmp/pip-build-tracker-l1nh5mdo
2024-02-26T12:06:46,906 Initialized build tracking at /tmp/pip-build-tracker-l1nh5mdo
2024-02-26T12:06:46,907 Created build tracker: /tmp/pip-build-tracker-l1nh5mdo
2024-02-26T12:06:46,907 Entered build tracker: /tmp/pip-build-tracker-l1nh5mdo
2024-02-26T12:06:46,907 Created temporary directory: /tmp/pip-wheel-55fmy3xv
2024-02-26T12:06:46,911 Created temporary directory: /tmp/pip-ephem-wheel-cache-dslbawbw
2024-02-26T12:06:46,935 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T12:06:46,939 2 location(s) to search for versions of moleculekit:
2024-02-26T12:06:46,939 * https://pypi.org/simple/moleculekit/
2024-02-26T12:06:46,939 * https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:06:46,939 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-02-26T12:06:46,940 Getting page https://pypi.org/simple/moleculekit/
2024-02-26T12:06:46,941 Found index url https://pypi.org/simple/
2024-02-26T12:06:46,998 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-02-26T12:06:47,039   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,039   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-02-26T12:06:47,040   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,040   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-02-26T12:06:47,040   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,041   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-02-26T12:06:47,041   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,041   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-02-26T12:06:47,041   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,041   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-02-26T12:06:47,042   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,042   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-02-26T12:06:47,042   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,042   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-02-26T12:06:47,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,043   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-02-26T12:06:47,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,043   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-02-26T12:06:47,044   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,044   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-02-26T12:06:47,044   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,044   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-02-26T12:06:47,044   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,045   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-02-26T12:06:47,045   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,045   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-02-26T12:06:47,045   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,046   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-02-26T12:06:47,046   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,046   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-02-26T12:06:47,046   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,047   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-02-26T12:06:47,047   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,047   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-02-26T12:06:47,047   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,047   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-02-26T12:06:47,048   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,048   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-02-26T12:06:47,048   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,048   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-02-26T12:06:47,049   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,049   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-02-26T12:06:47,049   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,049   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-02-26T12:06:47,050   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,050   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-02-26T12:06:47,050   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,050   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-02-26T12:06:47,050   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,051   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-02-26T12:06:47,051   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,051   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-02-26T12:06:47,051   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,052   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-02-26T12:06:47,052   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,052   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-02-26T12:06:47,052   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,052   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-02-26T12:06:47,053   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,053   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-02-26T12:06:47,053   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,053   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-02-26T12:06:47,054   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:06:47,054   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-02-26T12:06:47,054   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:06:47,073   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
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2024-02-26T12:06:47,075   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-02-26T12:06:47,075   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-02-26T12:06:47,076   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-02-26T12:06:47,076   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-02-26T12:06:47,076   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-02-26T12:06:47,076   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-02-26T12:06:47,077   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-02-26T12:06:47,077   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-02-26T12:06:47,077   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-02-26T12:06:47,078   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-02-26T12:06:47,078   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-02-26T12:06:47,078   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-02-26T12:06:47,078   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-02-26T12:06:47,079   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-02-26T12:06:47,079   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-02-26T12:06:47,079   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-02-26T12:06:47,079   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-02-26T12:06:47,080   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-02-26T12:06:47,080   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-02-26T12:06:47,080   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-02-26T12:06:47,080   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-02-26T12:06:47,081   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-02-26T12:06:47,081   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
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2024-02-26T12:06:47,081   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-02-26T12:06:47,082   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
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2024-02-26T12:06:47,082   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
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2024-02-26T12:06:47,083   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
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2024-02-26T12:06:47,084   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
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2024-02-26T12:06:47,085   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-02-26T12:06:47,086   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-02-26T12:06:47,087   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-02-26T12:06:47,087   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-02-26T12:06:47,088   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-02-26T12:06:47,088   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-02-26T12:06:47,089   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-02-26T12:06:47,089   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-02-26T12:06:47,090   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-02-26T12:06:47,090   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
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2024-02-26T12:06:47,091   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
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2024-02-26T12:06:47,096   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-02-26T12:06:47,096   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-02-26T12:06:47,097   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-02-26T12:06:47,097   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-02-26T12:06:47,098   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-02-26T12:06:47,098   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-02-26T12:06:47,099   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-02-26T12:06:47,099   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-02-26T12:06:47,100   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-02-26T12:06:47,100   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-02-26T12:06:47,101   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-02-26T12:06:47,102   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-02-26T12:06:47,102   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-02-26T12:06:47,103   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-02-26T12:06:47,103   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-02-26T12:06:47,104   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-02-26T12:06:47,104   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-02-26T12:06:47,105   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-02-26T12:06:47,105   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-02-26T12:06:47,106   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-02-26T12:06:47,106   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-02-26T12:06:47,107   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-02-26T12:06:47,107   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-02-26T12:06:47,108   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-02-26T12:06:47,108   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-02-26T12:06:47,109   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-02-26T12:06:47,110   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-02-26T12:06:47,110   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-02-26T12:06:47,111   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-02-26T12:06:47,111   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-02-26T12:06:47,112   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-02-26T12:06:47,112   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-02-26T12:06:47,113   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-02-26T12:06:47,113   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-02-26T12:06:47,114 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:06:47,114 Getting page https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:06:47,115 Found index url https://www.piwheels.org/simple/
2024-02-26T12:06:49,923 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-02-26T12:06:50,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T12:06:50,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T12:06:50,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv6l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv7l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv6l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv6l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv7l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv6l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv7l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv6l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.18-cp311-cp311-linux_armv7l.whl#sha256=a966bd50ec01a5adea3abe3aa5940589b8a1d256398679c0fc3a358184c88855 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:06:50,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.17-cp311-cp311-linux_armv6l.whl#sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T12:06:50,101   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:06:50,102   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,102   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:06:50,102   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,102   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,103   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:06:50,103   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:06:50,104   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:06:50,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:06:50,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:06:50,127 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:06:50,127 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-02-26T12:06:50,175 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-02-26T12:06:50,198 Collecting moleculekit==1.8.22
2024-02-26T12:06:50,205   Created temporary directory: /tmp/pip-unpack-dklc60ur
2024-02-26T12:06:50,259   Downloading moleculekit-1.8.22.tar.gz (6.8 MB)
2024-02-26T12:06:53,589   Added moleculekit==1.8.22 from https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz to build tracker '/tmp/pip-build-tracker-l1nh5mdo'
2024-02-26T12:06:53,598   Created temporary directory: /tmp/pip-build-env-8elmb0xn
2024-02-26T12:06:53,608   Installing build dependencies: started
2024-02-26T12:06:53,609   Running command pip subprocess to install build dependencies
2024-02-26T12:06:55,147   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-02-26T12:06:55,996   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T12:07:00,917   Collecting setuptools
2024-02-26T12:07:03,184     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-02-26T12:07:06,155   Collecting numpy>=1.18.5
2024-02-26T12:07:08,759     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-02-26T12:07:14,448   Collecting Cython>=0.29.21
2024-02-26T12:07:14,449     Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata
2024-02-26T12:07:14,459     Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB)
2024-02-26T12:07:14,812   WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/toml/
2024-02-26T12:07:17,291   Collecting toml
2024-02-26T12:07:17,563     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-02-26T12:07:17,748   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-02-26T12:07:17,765     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-02-26T12:07:17,927   Collecting tomli (from versioneer[toml]==0.28)
2024-02-26T12:07:17,976     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-02-26T12:07:18,230   Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB)
2024-02-26T12:07:21,124   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-02-26T12:07:21,162     Creating /tmp/pip-build-env-8elmb0xn/overlay/bin
2024-02-26T12:07:21,164     changing mode of /tmp/pip-build-env-8elmb0xn/overlay/bin/versioneer to 755
2024-02-26T12:07:31,718     changing mode of /tmp/pip-build-env-8elmb0xn/overlay/bin/f2py to 755
2024-02-26T12:07:34,395     changing mode of /tmp/pip-build-env-8elmb0xn/overlay/bin/cygdb to 755
2024-02-26T12:07:34,397     changing mode of /tmp/pip-build-env-8elmb0xn/overlay/bin/cython to 755
2024-02-26T12:07:34,400     changing mode of /tmp/pip-build-env-8elmb0xn/overlay/bin/cythonize to 755
2024-02-26T12:07:34,426   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2024-02-26T12:07:34,426   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.4 which is incompatible.
2024-02-26T12:07:34,427   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-02-26T12:07:34,607   WARNING: There was an error checking the latest version of pip.
2024-02-26T12:07:35,054   Installing build dependencies: finished with status 'done'
2024-02-26T12:07:35,059   Getting requirements to build wheel: started
2024-02-26T12:07:35,060   Running command Getting requirements to build wheel
2024-02-26T12:08:53,652   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-02-26T12:09:12,439   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,439   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,439   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,439   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,439   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:09:12,440   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:09:12,441   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:09:12,441   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:09:12,441   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:09:12,441   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-02-26T12:09:12,441   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-02-26T12:09:12,441   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-02-26T12:09:12,441   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-02-26T12:09:12,442   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-02-26T12:09:12,442   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-02-26T12:09:12,442   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-02-26T12:09:12,442   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-02-26T12:09:12,442   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-02-26T12:09:12,442   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-02-26T12:09:12,442   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-02-26T12:09:12,442   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-02-26T12:09:12,443   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-02-26T12:09:12,443   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-02-26T12:09:12,443   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-02-26T12:09:12,735   running egg_info
2024-02-26T12:09:12,741   writing moleculekit.egg-info/PKG-INFO
2024-02-26T12:09:12,745   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T12:09:12,747   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T12:09:12,748   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-26T12:09:12,782   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,782   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,782   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,782   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,783   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,784   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,785   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,786   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,787   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,788   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,789   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,789   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,789   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,789   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,789   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:12,790   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:12,792   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:12,807   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:09:12,845   reading manifest template 'MANIFEST.in'
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2024-02-26T12:09:14,203   Getting requirements to build wheel: finished with status 'done'
2024-02-26T12:09:14,218   Installing backend dependencies: started
2024-02-26T12:09:14,219   Running command pip subprocess to install backend dependencies
2024-02-26T12:09:15,496   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-02-26T12:09:16,137   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T12:09:16,569   Collecting wheel
2024-02-26T12:09:16,587     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-02-26T12:09:19,107   Installing collected packages: wheel
2024-02-26T12:09:19,340     Creating /tmp/pip-build-env-8elmb0xn/normal/bin
2024-02-26T12:09:19,343     changing mode of /tmp/pip-build-env-8elmb0xn/normal/bin/wheel to 755
2024-02-26T12:09:19,357   Successfully installed wheel-0.42.0
2024-02-26T12:09:19,535   WARNING: There was an error checking the latest version of pip.
2024-02-26T12:09:19,765   Installing backend dependencies: finished with status 'done'
2024-02-26T12:09:19,767   Created temporary directory: /tmp/pip-modern-metadata-exkxe74s
2024-02-26T12:09:19,770   Preparing metadata (pyproject.toml): started
2024-02-26T12:09:19,771   Running command Preparing metadata (pyproject.toml)
2024-02-26T12:09:22,270   running dist_info
2024-02-26T12:09:22,272   creating /tmp/pip-modern-metadata-exkxe74s/moleculekit.egg-info
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2024-02-26T12:09:22,324   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,325   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,325   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:22,325   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,326   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,326   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,327   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,328   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:09:22,334   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:22,335   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:22,335   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:22,343   reading manifest file '/tmp/pip-modern-metadata-exkxe74s/moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:09:22,345   reading manifest template 'MANIFEST.in'
2024-02-26T12:09:22,707   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T12:09:22,708   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T12:09:22,709   no previously-included directories found matching 'package'
2024-02-26T12:09:22,709   adding license file 'LICENSE'
2024-02-26T12:09:22,722   writing manifest file '/tmp/pip-modern-metadata-exkxe74s/moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:09:22,731   creating '/tmp/pip-modern-metadata-exkxe74s/moleculekit-1.8.22.dist-info'
2024-02-26T12:09:22,930   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-26T12:09:22,937   Source in /tmp/pip-wheel-55fmy3xv/moleculekit_b479cf130da049e694476fad9e3ebf9d has version 1.8.22, which satisfies requirement moleculekit==1.8.22 from https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz
2024-02-26T12:09:22,938   Removed moleculekit==1.8.22 from https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz from build tracker '/tmp/pip-build-tracker-l1nh5mdo'
2024-02-26T12:09:22,944 Created temporary directory: /tmp/pip-unpack-bvb0s9zn
2024-02-26T12:09:22,945 Created temporary directory: /tmp/pip-unpack-r9kmxvbu
2024-02-26T12:09:22,953 Building wheels for collected packages: moleculekit
2024-02-26T12:09:22,962   Created temporary directory: /tmp/pip-wheel-xb3nntkc
2024-02-26T12:09:22,962   Destination directory: /tmp/pip-wheel-xb3nntkc
2024-02-26T12:09:22,966   Building wheel for moleculekit (pyproject.toml): started
2024-02-26T12:09:22,968   Running command Building wheel for moleculekit (pyproject.toml)
2024-02-26T12:09:25,339   running bdist_wheel
2024-02-26T12:09:25,359   running build
2024-02-26T12:09:25,359   running build_py
2024-02-26T12:09:25,367   creating build
2024-02-26T12:09:25,368   creating build/lib.linux-armv7l-cpython-39
2024-02-26T12:09:25,369   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,370   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,372   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,374   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,376   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,378   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,380   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,386   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,391   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,396   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,398   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,400   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,402   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,404   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,406   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,408   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,410   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,412   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,414   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,416   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,418   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,420   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:25,423   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,424   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,427   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,429   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,432   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,434   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,437   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,439   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,443   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,444   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,446   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,449   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,451   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,454   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,457   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:09:25,460   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:09:25,461   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:09:25,462   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:09:25,466   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:09:25,467   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:09:25,470   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:09:25,472   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:09:25,473   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:09:25,476   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:09:25,477   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:09:25,482   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:09:25,484   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:09:25,487   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:09:25,488   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:09:25,491   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:09:25,492   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:09:25,496   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-02-26T12:09:25,497   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-02-26T12:09:25,499   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,500   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,502   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,506   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,508   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,510   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,512   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:09:25,515   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,516   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,520   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,522   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,524   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,526   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,529   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,532   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,534   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,536   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,538   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,541   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,542   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,544   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,547   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,550   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:09:25,553   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-26T12:09:25,553   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-26T12:09:25,555   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-26T12:09:25,558   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:09:25,559   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:09:25,561   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:09:25,563   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:09:25,565   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:09:25,568   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:09:25,569   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:09:25,572   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:09:25,575   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:09:25,576   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:09:25,579   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-26T12:09:25,581   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-26T12:09:25,583   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-26T12:09:25,585   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:09:25,586   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:09:25,588   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:09:25,590   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:09:25,592   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:09:25,594   running egg_info
2024-02-26T12:09:25,599   writing moleculekit.egg-info/PKG-INFO
2024-02-26T12:09:25,603   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T12:09:25,605   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T12:09:25,606   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-26T12:09:25,625   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,626   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,627   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,628   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,629   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,630   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,631   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,632   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,633   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,633   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,633   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,633   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,633   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,635   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,635   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,635   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,635   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,635   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,636   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,636   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,636   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,636   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,637   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,637   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,637   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,638   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,638   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,638   dependency /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:09:25,644   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:09:25,654   reading manifest template 'MANIFEST.in'
2024-02-26T12:09:25,946   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T12:09:25,947   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T12:09:25,948   no previously-included directories found matching 'package'
2024-02-26T12:09:25,949   adding license file 'LICENSE'
2024-02-26T12:09:25,967   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:09:25,978   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-02-26T12:09:25,978   !!

2024-02-26T12:09:25,978           ********************************************************************************
2024-02-26T12:09:25,978           ############################
2024-02-26T12:09:25,979           # Package would be ignored #
2024-02-26T12:09:25,979           ############################
2024-02-26T12:09:25,979           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-02-26T12:09:25,979           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:25,979           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:25,979           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-02-26T12:09:25,979           to the `packages` configuration field.

2024-02-26T12:09:25,980           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:25,980           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:25,980           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:25,980           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:25,980           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:25,981           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-02-26T12:09:25,981           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-02-26T12:09:25,981           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:25,981           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:25,981           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:25,981           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:25,982           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:25,982           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:25,982                 even if it does not contain any `.py` files.
2024-02-26T12:09:25,982                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:25,982                 directory, all directories are treated like packages.
2024-02-26T12:09:25,982           ********************************************************************************

2024-02-26T12:09:25,983   !!
2024-02-26T12:09:25,983     check.warn(importable)
2024-02-26T12:09:25,983   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-02-26T12:09:25,983   !!

2024-02-26T12:09:25,983           ********************************************************************************
2024-02-26T12:09:25,983           ############################
2024-02-26T12:09:25,984           # Package would be ignored #
2024-02-26T12:09:25,984           ############################
2024-02-26T12:09:25,984           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-02-26T12:09:25,984           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:25,984           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:25,984           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-02-26T12:09:25,984           to the `packages` configuration field.

2024-02-26T12:09:25,985           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:25,985           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:25,985           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:25,985           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:25,985           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:25,986           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-02-26T12:09:25,986           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-02-26T12:09:25,986           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:25,986           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:25,986           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:25,986           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:25,987           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:25,987           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:25,987                 even if it does not contain any `.py` files.
2024-02-26T12:09:25,987                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:25,987                 directory, all directories are treated like packages.
2024-02-26T12:09:25,987           ********************************************************************************

2024-02-26T12:09:25,988   !!
2024-02-26T12:09:25,988     check.warn(importable)
2024-02-26T12:09:25,988   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-02-26T12:09:25,988   !!

2024-02-26T12:09:25,988           ********************************************************************************
2024-02-26T12:09:25,988           ############################
2024-02-26T12:09:25,988           # Package would be ignored #
2024-02-26T12:09:25,988           ############################
2024-02-26T12:09:25,989           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-02-26T12:09:25,989           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:25,989           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:25,989           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-02-26T12:09:25,989           to the `packages` configuration field.

2024-02-26T12:09:25,989           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:25,990           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:25,990           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:25,990           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:25,990           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:25,990           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-02-26T12:09:25,990           already explicitly excluding 'moleculekit.cython_utils' via
2024-02-26T12:09:25,990           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:25,991           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:25,991           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:25,991           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:25,991           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:25,991           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:25,991                 even if it does not contain any `.py` files.
2024-02-26T12:09:25,992                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:25,992                 directory, all directories are treated like packages.
2024-02-26T12:09:25,992           ********************************************************************************

2024-02-26T12:09:25,992   !!
2024-02-26T12:09:25,992     check.warn(importable)
2024-02-26T12:09:25,992   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-02-26T12:09:25,992   !!

2024-02-26T12:09:25,993           ********************************************************************************
2024-02-26T12:09:25,993           ############################
2024-02-26T12:09:25,993           # Package would be ignored #
2024-02-26T12:09:25,993           ############################
2024-02-26T12:09:25,993           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-02-26T12:09:25,993           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:25,993           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:25,993           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-02-26T12:09:25,993           to the `packages` configuration field.

2024-02-26T12:09:25,994           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:25,994           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:25,994           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:25,994           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:25,994           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:25,995           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-02-26T12:09:25,995           already explicitly excluding 'moleculekit.distance_utils' via
2024-02-26T12:09:25,995           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:25,995           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:25,995           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:25,995           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:25,995           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:25,996           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:25,996                 even if it does not contain any `.py` files.
2024-02-26T12:09:25,996                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:25,996                 directory, all directories are treated like packages.
2024-02-26T12:09:25,996           ********************************************************************************

2024-02-26T12:09:25,996   !!
2024-02-26T12:09:25,996     check.warn(importable)
2024-02-26T12:09:25,997   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-02-26T12:09:25,997   !!

2024-02-26T12:09:25,997           ********************************************************************************
2024-02-26T12:09:25,997           ############################
2024-02-26T12:09:25,997           # Package would be ignored #
2024-02-26T12:09:25,997           ############################
2024-02-26T12:09:25,997           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-02-26T12:09:25,997           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:25,998           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:25,998           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-02-26T12:09:25,998           to the `packages` configuration field.

2024-02-26T12:09:25,998           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:25,998           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:25,998           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:25,998           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:25,999           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:25,999           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-02-26T12:09:25,999           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-02-26T12:09:25,999           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:25,999           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:25,999           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:25,999           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,000           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,000           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,000                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,000                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,000                 directory, all directories are treated like packages.
2024-02-26T12:09:26,001           ********************************************************************************

2024-02-26T12:09:26,001   !!
2024-02-26T12:09:26,001     check.warn(importable)
2024-02-26T12:09:26,001   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-02-26T12:09:26,001   !!

2024-02-26T12:09:26,001           ********************************************************************************
2024-02-26T12:09:26,001           ############################
2024-02-26T12:09:26,002           # Package would be ignored #
2024-02-26T12:09:26,002           ############################
2024-02-26T12:09:26,002           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-02-26T12:09:26,002           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,002           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,002           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-02-26T12:09:26,002           to the `packages` configuration field.

2024-02-26T12:09:26,003           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,003           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,003           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,003           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,003           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,003           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-02-26T12:09:26,004           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-02-26T12:09:26,004           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,004           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,004           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,004           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,004           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,005           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,005                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,005                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,005                 directory, all directories are treated like packages.
2024-02-26T12:09:26,005           ********************************************************************************

2024-02-26T12:09:26,005   !!
2024-02-26T12:09:26,005     check.warn(importable)
2024-02-26T12:09:26,006   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-02-26T12:09:26,006   !!

2024-02-26T12:09:26,006           ********************************************************************************
2024-02-26T12:09:26,006           ############################
2024-02-26T12:09:26,006           # Package would be ignored #
2024-02-26T12:09:26,006           ############################
2024-02-26T12:09:26,006           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-02-26T12:09:26,006           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,007           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,007           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-02-26T12:09:26,007           to the `packages` configuration field.

2024-02-26T12:09:26,007           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,007           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,007           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,008           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,008           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,008           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-02-26T12:09:26,008           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-02-26T12:09:26,008           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,008           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,008           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,009           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,009           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,009           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,009                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,009                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,010                 directory, all directories are treated like packages.
2024-02-26T12:09:26,010           ********************************************************************************

2024-02-26T12:09:26,010   !!
2024-02-26T12:09:26,010     check.warn(importable)
2024-02-26T12:09:26,010   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-02-26T12:09:26,010   !!

2024-02-26T12:09:26,010           ********************************************************************************
2024-02-26T12:09:26,011           ############################
2024-02-26T12:09:26,011           # Package would be ignored #
2024-02-26T12:09:26,011           ############################
2024-02-26T12:09:26,011           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-02-26T12:09:26,011           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,011           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,011           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-02-26T12:09:26,011           to the `packages` configuration field.

2024-02-26T12:09:26,012           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,012           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,012           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,012           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,012           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,012           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-02-26T12:09:26,013           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-02-26T12:09:26,013           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,013           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,013           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,013           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,013           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,014           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,014                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,014                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,014                 directory, all directories are treated like packages.
2024-02-26T12:09:26,014           ********************************************************************************

2024-02-26T12:09:26,014   !!
2024-02-26T12:09:26,014     check.warn(importable)
2024-02-26T12:09:26,015   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-02-26T12:09:26,015   !!

2024-02-26T12:09:26,015           ********************************************************************************
2024-02-26T12:09:26,015           ############################
2024-02-26T12:09:26,015           # Package would be ignored #
2024-02-26T12:09:26,015           ############################
2024-02-26T12:09:26,015           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-02-26T12:09:26,015           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,016           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,016           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-02-26T12:09:26,016           to the `packages` configuration field.

2024-02-26T12:09:26,016           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,016           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,016           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,017           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,017           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,017           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-02-26T12:09:26,017           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-02-26T12:09:26,017           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,017           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,018           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,018           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,018           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,018           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,019                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,019                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,019                 directory, all directories are treated like packages.
2024-02-26T12:09:26,019           ********************************************************************************

2024-02-26T12:09:26,019   !!
2024-02-26T12:09:26,019     check.warn(importable)
2024-02-26T12:09:26,019   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-02-26T12:09:26,019   !!

2024-02-26T12:09:26,020           ********************************************************************************
2024-02-26T12:09:26,020           ############################
2024-02-26T12:09:26,020           # Package would be ignored #
2024-02-26T12:09:26,020           ############################
2024-02-26T12:09:26,020           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-02-26T12:09:26,020           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,020           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,021           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-02-26T12:09:26,021           to the `packages` configuration field.

2024-02-26T12:09:26,021           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,021           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,021           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,021           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,022           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,022           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-02-26T12:09:26,022           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-02-26T12:09:26,022           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,022           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,022           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,022           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,023           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,023           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,023                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,023                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,023                 directory, all directories are treated like packages.
2024-02-26T12:09:26,023           ********************************************************************************

2024-02-26T12:09:26,024   !!
2024-02-26T12:09:26,024     check.warn(importable)
2024-02-26T12:09:26,024   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-02-26T12:09:26,024   !!

2024-02-26T12:09:26,024           ********************************************************************************
2024-02-26T12:09:26,024           ############################
2024-02-26T12:09:26,024           # Package would be ignored #
2024-02-26T12:09:26,024           ############################
2024-02-26T12:09:26,025           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-02-26T12:09:26,025           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,025           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,025           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-02-26T12:09:26,025           to the `packages` configuration field.

2024-02-26T12:09:26,025           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,025           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,026           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,026           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,026           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,026           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-02-26T12:09:26,026           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-02-26T12:09:26,026           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,026           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,027           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,027           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,027           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,027           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,027                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,028                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,028                 directory, all directories are treated like packages.
2024-02-26T12:09:26,028           ********************************************************************************

2024-02-26T12:09:26,028   !!
2024-02-26T12:09:26,028     check.warn(importable)
2024-02-26T12:09:26,028   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-02-26T12:09:26,028   !!

2024-02-26T12:09:26,029           ********************************************************************************
2024-02-26T12:09:26,029           ############################
2024-02-26T12:09:26,029           # Package would be ignored #
2024-02-26T12:09:26,029           ############################
2024-02-26T12:09:26,029           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-02-26T12:09:26,029           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,029           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,029           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-02-26T12:09:26,030           to the `packages` configuration field.

2024-02-26T12:09:26,030           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,030           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,030           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,030           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,030           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,031           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-02-26T12:09:26,031           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-02-26T12:09:26,031           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,031           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,031           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,031           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,031           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,032           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,032                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,032                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,032                 directory, all directories are treated like packages.
2024-02-26T12:09:26,032           ********************************************************************************

2024-02-26T12:09:26,032   !!
2024-02-26T12:09:26,033     check.warn(importable)
2024-02-26T12:09:26,033   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-02-26T12:09:26,033   !!

2024-02-26T12:09:26,033           ********************************************************************************
2024-02-26T12:09:26,033           ############################
2024-02-26T12:09:26,033           # Package would be ignored #
2024-02-26T12:09:26,033           ############################
2024-02-26T12:09:26,033           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-02-26T12:09:26,034           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,034           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,034           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-02-26T12:09:26,034           to the `packages` configuration field.

2024-02-26T12:09:26,034           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,034           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,035           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,035           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,035           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,036           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-02-26T12:09:26,036           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-02-26T12:09:26,036           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,036           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,036           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,036           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,037           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,037           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,037                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,037                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,037                 directory, all directories are treated like packages.
2024-02-26T12:09:26,037           ********************************************************************************

2024-02-26T12:09:26,038   !!
2024-02-26T12:09:26,038     check.warn(importable)
2024-02-26T12:09:26,038   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-02-26T12:09:26,038   !!

2024-02-26T12:09:26,038           ********************************************************************************
2024-02-26T12:09:26,038           ############################
2024-02-26T12:09:26,038           # Package would be ignored #
2024-02-26T12:09:26,038           ############################
2024-02-26T12:09:26,039           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-02-26T12:09:26,039           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,039           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,039           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-02-26T12:09:26,039           to the `packages` configuration field.

2024-02-26T12:09:26,039           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,040           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,040           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,040           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,040           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,040           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-02-26T12:09:26,041           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-02-26T12:09:26,041           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,041           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,041           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,041           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,041           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,042           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,042                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,042                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,042                 directory, all directories are treated like packages.
2024-02-26T12:09:26,042           ********************************************************************************

2024-02-26T12:09:26,043   !!
2024-02-26T12:09:26,043     check.warn(importable)
2024-02-26T12:09:26,043   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-02-26T12:09:26,043   !!

2024-02-26T12:09:26,043           ********************************************************************************
2024-02-26T12:09:26,043           ############################
2024-02-26T12:09:26,043           # Package would be ignored #
2024-02-26T12:09:26,044           ############################
2024-02-26T12:09:26,044           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-02-26T12:09:26,044           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,044           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,044           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-02-26T12:09:26,044           to the `packages` configuration field.

2024-02-26T12:09:26,045           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,045           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,045           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,045           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,045           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,046           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-02-26T12:09:26,046           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-02-26T12:09:26,046           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,046           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,046           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,046           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,047           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,047           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,047                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,047                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,047                 directory, all directories are treated like packages.
2024-02-26T12:09:26,048           ********************************************************************************

2024-02-26T12:09:26,048   !!
2024-02-26T12:09:26,048     check.warn(importable)
2024-02-26T12:09:26,048   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-02-26T12:09:26,048   !!

2024-02-26T12:09:26,048           ********************************************************************************
2024-02-26T12:09:26,049           ############################
2024-02-26T12:09:26,049           # Package would be ignored #
2024-02-26T12:09:26,049           ############################
2024-02-26T12:09:26,049           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-02-26T12:09:26,049           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,049           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,049           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-02-26T12:09:26,050           to the `packages` configuration field.

2024-02-26T12:09:26,050           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,050           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,050           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,050           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,050           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,051           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-02-26T12:09:26,051           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-02-26T12:09:26,051           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,051           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,051           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,051           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,052           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,052           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,052                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,052                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,052                 directory, all directories are treated like packages.
2024-02-26T12:09:26,052           ********************************************************************************

2024-02-26T12:09:26,053   !!
2024-02-26T12:09:26,053     check.warn(importable)
2024-02-26T12:09:26,053   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-02-26T12:09:26,053   !!

2024-02-26T12:09:26,053           ********************************************************************************
2024-02-26T12:09:26,053           ############################
2024-02-26T12:09:26,053           # Package would be ignored #
2024-02-26T12:09:26,054           ############################
2024-02-26T12:09:26,054           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-02-26T12:09:26,054           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,054           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,054           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-02-26T12:09:26,054           to the `packages` configuration field.

2024-02-26T12:09:26,055           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,055           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,055           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,055           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,055           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,056           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-02-26T12:09:26,056           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-02-26T12:09:26,056           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,056           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,056           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,056           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,057           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,057           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,057                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,057                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,058                 directory, all directories are treated like packages.
2024-02-26T12:09:26,058           ********************************************************************************

2024-02-26T12:09:26,058   !!
2024-02-26T12:09:26,058     check.warn(importable)
2024-02-26T12:09:26,058   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-02-26T12:09:26,058   !!

2024-02-26T12:09:26,059           ********************************************************************************
2024-02-26T12:09:26,059           ############################
2024-02-26T12:09:26,059           # Package would be ignored #
2024-02-26T12:09:26,059           ############################
2024-02-26T12:09:26,059           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-02-26T12:09:26,059           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,059           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,060           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-02-26T12:09:26,060           to the `packages` configuration field.

2024-02-26T12:09:26,060           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,060           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,060           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,061           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,061           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,061           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-02-26T12:09:26,061           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-02-26T12:09:26,061           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,061           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,062           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,062           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,062           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,062           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,063                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,063                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,063                 directory, all directories are treated like packages.
2024-02-26T12:09:26,063           ********************************************************************************

2024-02-26T12:09:26,063   !!
2024-02-26T12:09:26,063     check.warn(importable)
2024-02-26T12:09:26,063   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-02-26T12:09:26,064   !!

2024-02-26T12:09:26,064           ********************************************************************************
2024-02-26T12:09:26,064           ############################
2024-02-26T12:09:26,064           # Package would be ignored #
2024-02-26T12:09:26,064           ############################
2024-02-26T12:09:26,064           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-02-26T12:09:26,064           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,065           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,065           package, please make sure that 'moleculekit.share' is explicitly added
2024-02-26T12:09:26,065           to the `packages` configuration field.

2024-02-26T12:09:26,065           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,065           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,066           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,066           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,066           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,066           If you don't want 'moleculekit.share' to be distributed and are
2024-02-26T12:09:26,066           already explicitly excluding 'moleculekit.share' via
2024-02-26T12:09:26,067           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,067           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,067           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,067           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,067           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,068           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,068                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,068                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,068                 directory, all directories are treated like packages.
2024-02-26T12:09:26,068           ********************************************************************************

2024-02-26T12:09:26,068   !!
2024-02-26T12:09:26,069     check.warn(importable)
2024-02-26T12:09:26,069   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-02-26T12:09:26,069   !!

2024-02-26T12:09:26,069           ********************************************************************************
2024-02-26T12:09:26,069           ############################
2024-02-26T12:09:26,069           # Package would be ignored #
2024-02-26T12:09:26,069           ############################
2024-02-26T12:09:26,070           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-02-26T12:09:26,070           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,070           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,070           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-02-26T12:09:26,070           to the `packages` configuration field.

2024-02-26T12:09:26,070           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,071           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,071           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,071           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,071           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,071           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-02-26T12:09:26,072           already explicitly excluding 'moleculekit.share.atomselect' via
2024-02-26T12:09:26,072           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,072           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,072           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,072           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,073           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,073           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,073                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,073                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,073                 directory, all directories are treated like packages.
2024-02-26T12:09:26,073           ********************************************************************************

2024-02-26T12:09:26,074   !!
2024-02-26T12:09:26,074     check.warn(importable)
2024-02-26T12:09:26,074   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-02-26T12:09:26,074   !!

2024-02-26T12:09:26,074           ********************************************************************************
2024-02-26T12:09:26,074           ############################
2024-02-26T12:09:26,075           # Package would be ignored #
2024-02-26T12:09:26,075           ############################
2024-02-26T12:09:26,075           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-02-26T12:09:26,075           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,075           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,076           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-02-26T12:09:26,076           to the `packages` configuration field.

2024-02-26T12:09:26,076           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,076           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,076           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,076           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,077           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,077           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-02-26T12:09:26,077           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-02-26T12:09:26,077           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,077           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,077           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,078           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,078           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,078           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,078                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,078                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,079                 directory, all directories are treated like packages.
2024-02-26T12:09:26,079           ********************************************************************************

2024-02-26T12:09:26,079   !!
2024-02-26T12:09:26,079     check.warn(importable)
2024-02-26T12:09:26,079   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-02-26T12:09:26,079   !!

2024-02-26T12:09:26,079           ********************************************************************************
2024-02-26T12:09:26,080           ############################
2024-02-26T12:09:26,080           # Package would be ignored #
2024-02-26T12:09:26,080           ############################
2024-02-26T12:09:26,080           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-02-26T12:09:26,080           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,080           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,080           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-02-26T12:09:26,081           to the `packages` configuration field.

2024-02-26T12:09:26,081           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,081           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,081           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,081           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,082           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,082           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-02-26T12:09:26,082           already explicitly excluding 'moleculekit.tmalign' via
2024-02-26T12:09:26,082           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,082           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,082           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,083           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,083           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,083           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,083                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,083                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,083                 directory, all directories are treated like packages.
2024-02-26T12:09:26,084           ********************************************************************************

2024-02-26T12:09:26,084   !!
2024-02-26T12:09:26,084     check.warn(importable)
2024-02-26T12:09:26,084   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-02-26T12:09:26,084   !!

2024-02-26T12:09:26,084           ********************************************************************************
2024-02-26T12:09:26,085           ############################
2024-02-26T12:09:26,085           # Package would be ignored #
2024-02-26T12:09:26,085           ############################
2024-02-26T12:09:26,087           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-02-26T12:09:26,087           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,087           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,087           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-02-26T12:09:26,087           to the `packages` configuration field.

2024-02-26T12:09:26,088           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,088           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,088           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,088           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,089           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,089           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-02-26T12:09:26,089           already explicitly excluding 'moleculekit.tmalign.include' via
2024-02-26T12:09:26,089           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,089           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,089           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,090           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,090           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,090           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,090                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,091                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,091                 directory, all directories are treated like packages.
2024-02-26T12:09:26,091           ********************************************************************************

2024-02-26T12:09:26,091   !!
2024-02-26T12:09:26,091     check.warn(importable)
2024-02-26T12:09:26,091   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-02-26T12:09:26,091   !!

2024-02-26T12:09:26,092           ********************************************************************************
2024-02-26T12:09:26,092           ############################
2024-02-26T12:09:26,092           # Package would be ignored #
2024-02-26T12:09:26,092           ############################
2024-02-26T12:09:26,092           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-02-26T12:09:26,092           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,092           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,092           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-02-26T12:09:26,093           to the `packages` configuration field.

2024-02-26T12:09:26,093           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,093           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,093           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,093           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,094           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,094           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-02-26T12:09:26,094           already explicitly excluding 'moleculekit.tmalign.src' via
2024-02-26T12:09:26,094           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,094           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,094           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,095           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,095           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,095           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,095                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,095                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,096                 directory, all directories are treated like packages.
2024-02-26T12:09:26,096           ********************************************************************************

2024-02-26T12:09:26,096   !!
2024-02-26T12:09:26,096     check.warn(importable)
2024-02-26T12:09:26,096   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-02-26T12:09:26,096   !!

2024-02-26T12:09:26,097           ********************************************************************************
2024-02-26T12:09:26,097           ############################
2024-02-26T12:09:26,097           # Package would be ignored #
2024-02-26T12:09:26,097           ############################
2024-02-26T12:09:26,097           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-02-26T12:09:26,097           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:09:26,098           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:09:26,098           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-02-26T12:09:26,098           to the `packages` configuration field.

2024-02-26T12:09:26,098           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:09:26,098           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:09:26,098           instead of `find_packages(...)`/`find:`).

2024-02-26T12:09:26,099           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:09:26,099           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:09:26,099           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-02-26T12:09:26,099           already explicitly excluding 'moleculekit.wrapping' via
2024-02-26T12:09:26,099           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:09:26,099           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:09:26,099           combination with a more fine grained `package-data` configuration.

2024-02-26T12:09:26,100           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:09:26,100           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:09:26,100           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:09:26,100                 even if it does not contain any `.py` files.
2024-02-26T12:09:26,100                 On the other hand, currently there is no concept of package data
2024-02-26T12:09:26,101                 directory, all directories are treated like packages.
2024-02-26T12:09:26,101           ********************************************************************************

2024-02-26T12:09:26,101   !!
2024-02-26T12:09:26,101     check.warn(importable)
2024-02-26T12:09:26,101   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:26,101   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:26,101   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:09:26,101   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:09:26,102   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:09:26,102   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:09:26,102   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:09:26,138   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:09:26,140   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:09:26,141   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:09:26,167   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:09:26,169   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:09:26,169   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:09:26,215   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:09:26,219   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:09:26,220   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:09:26,245   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:09:26,248   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:09:26,249   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:09:26,251   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:09:26,253   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:09:26,630   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-02-26T12:09:26,631   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-02-26T12:09:26,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-02-26T12:09:26,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,636   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,638   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,640   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,642   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,645   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,647   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,649   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,652   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,654   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,657   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,660   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,662   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,665   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,667   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,669   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,672   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,674   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,678   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,681   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,683   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,686   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,689   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,691   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,693   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,695   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,698   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,700   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,703   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,706   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,709   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,711   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,714   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,717   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,719   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,722   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,726   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,729   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,733   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,735   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,738   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,741   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,743   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,745   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,748   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,751   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,754   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,758   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,760   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,763   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,766   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,769   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,772   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,774   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,776   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,779   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,781   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,784   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,786   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,789   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,791   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,793   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,796   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,799   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,802   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,804   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,806   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,808   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,811   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,813   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,816   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,818   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,820   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,822   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,826   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,828   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,830   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,832   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,834   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,837   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,839   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,841   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,843   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,845   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,848   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,851   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,854   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,856   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,858   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,860   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,862   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,864   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,866   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,868   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,870   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,872   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,874   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,876   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,878   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,880   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,882   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,884   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,886   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,888   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,890   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,892   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,895   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,897   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,899   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,901   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,903   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,905   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,907   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,910   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,912   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,914   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,916   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,918   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,920   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,922   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,924   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,926   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,928   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,930   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,932   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,934   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,936   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,938   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,941   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,943   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,945   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,947   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,949   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,951   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,953   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,956   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,958   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,960   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,962   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,964   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,966   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,968   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,970   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,972   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,974   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,976   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,978   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,980   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,982   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,984   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,986   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,989   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,991   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,993   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,995   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,997   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:26,999   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,001   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,003   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,005   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,007   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,009   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,011   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,013   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,015   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,017   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,019   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,021   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,023   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,025   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,027   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,029   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,031   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,033   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,035   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,037   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:09:27,039   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:09:27,040   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:09:27,065   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:09:27,067   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:09:27,069   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-02-26T12:09:27,070   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-02-26T12:09:27,072   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-26T12:09:27,073   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-26T12:09:27,081   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:09:27,082   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:09:27,112   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:09:27,115   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:09:27,116   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:09:27,144   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:09:27,147   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:09:27,147   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:09:27,189   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:09:27,191   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:09:27,192   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:09:27,227   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:09:27,230   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:09:27,231   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:09:27,260   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:09:27,263   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:09:27,263   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:09:27,282   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:09:27,285   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:09:27,286   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:09:27,287   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:09:27,289   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:09:27,291   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:09:27,295   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-26T12:09:27,296   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-26T12:09:27,299   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:09:27,299   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:09:27,320   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:09:27,322   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:09:27,324   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:09:27,325   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:09:27,327   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:09:27,330   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:09:27,332   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:09:27,334   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:09:27,338   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-26T12:09:27,339   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-26T12:09:27,343   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,343   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,381   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,387   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,389   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,391   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,425   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,427   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:09:27,429   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,430   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,432   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,434   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,438   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,440   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,442   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:09:27,444   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:09:27,445   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:09:27,447   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:09:27,451   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:09:27,453   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:09:27,455   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:09:27,469   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-02-26T12:09:27,469   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.22'
2024-02-26T12:09:27,469   running build_ext
2024-02-26T12:09:27,480   building 'moleculekit.interactions.hbonds' extension
2024-02-26T12:09:27,481   creating build/temp.linux-armv7l-cpython-39
2024-02-26T12:09:27,481   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:09:27,482   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:09:27,483   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:09:27,484   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-02-26T12:09:27,761   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:09:27,761                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:09:27,761                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:09:27,761                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-02-26T12:09:27,762   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:09:27,762      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:09:27,762         |  ^~~~~~~
2024-02-26T12:09:50,941   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-26T12:09:50,941   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:09:50,941   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-02-26T12:09:50,941         |                                                    ^~~~~~~~~~~~~~~
2024-02-26T12:09:50,941   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-02-26T12:09:50,942   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-02-26T12:09:50,942         |                                                         ^~~~~~~~~~~~~~~
2024-02-26T12:09:54,230   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:09:54,573   building 'moleculekit.interactions.pipi' extension
2024-02-26T12:09:54,574   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:09:54,575   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-02-26T12:09:54,810   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:09:54,810                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:09:54,810                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:09:54,810                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-02-26T12:09:54,810   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:09:54,811      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:09:54,811         |  ^~~~~~~
2024-02-26T12:10:23,178   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:10:23,498   building 'moleculekit.interactions.cationpi' extension
2024-02-26T12:10:23,499   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:10:23,500   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-02-26T12:10:23,768   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:10:23,769                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:10:23,769                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:10:23,769                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-02-26T12:10:23,769   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:10:23,769      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:10:23,769         |  ^~~~~~~
2024-02-26T12:10:51,922   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:10:52,260   building 'moleculekit.interactions.sigmahole' extension
2024-02-26T12:10:52,261   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:10:52,262   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-02-26T12:10:52,501   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:10:52,502                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:10:52,502                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:10:52,502                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-02-26T12:10:52,502   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:10:52,502      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:10:52,502         |  ^~~~~~~
2024-02-26T12:11:20,148   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:11:20,479   building 'moleculekit.wrapping' extension
2024-02-26T12:11:20,480   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:11:20,480   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-02-26T12:11:20,747   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:11:20,748                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:11:20,748                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:11:20,748                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-02-26T12:11:20,748   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:11:20,748      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:11:20,748         |  ^~~~~~~
2024-02-26T12:11:46,720   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:11:46,949   building 'moleculekit.bondguesser_utils' extension
2024-02-26T12:11:46,950   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:11:46,951   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-02-26T12:11:47,190   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:11:47,190                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:11:47,190                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:11:47,190                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-02-26T12:11:47,190   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:11:47,190      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:11:47,190         |  ^~~~~~~
2024-02-26T12:11:48,746   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-02-26T12:11:48,747   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T12:11:48,747   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-02-26T12:11:48,747         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T12:11:48,747   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T12:11:48,747   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-02-26T12:11:48,748         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T12:11:48,748   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T12:11:48,748   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-02-26T12:11:48,748         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T12:11:48,748   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,748   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:11:48,749         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,749   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,749   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:11:48,749         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,749   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,749   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,749         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,750   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,750   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:11:48,750         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,750   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,750   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:11:48,750         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,750   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,751   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:11:48,751         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,751   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,751   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,751         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,751   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,751   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:11:48,752         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,752   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,752   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,752         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,752   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,752   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:11:48,752         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,753   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,753   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,753         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,753   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,753   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,753         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,753   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,754   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:11:48,754         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,754   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,754   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:11:48,754         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,754   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,754   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,755         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,755   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,755   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:11:48,755         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,755   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,755   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,756         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,756   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,756   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:11:48,756         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,756   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,756   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,756         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,757   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:11:48,757   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:11:48,757         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,775   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-02-26T12:11:48,776   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:11:48,776   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-02-26T12:11:48,776         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-02-26T12:11:48,776   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:11:48,776   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-02-26T12:11:48,776         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T12:12:12,033   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:12:12,346   building 'moleculekit.atomselect_utils' extension
2024-02-26T12:12:12,347   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:12:12,348   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-02-26T12:12:12,584   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:12:12,584                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:12:12,584                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:12:12,584                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-02-26T12:12:12,584   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:12:12,585      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:12:12,585         |  ^~~~~~~
2024-02-26T12:12:14,298   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-02-26T12:12:14,298   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:12:14,298   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-02-26T12:12:14,298         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T12:12:14,303   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T12:12:14,303   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:12:14,304   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T12:12:14,304         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:12:14,309   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T12:12:14,309   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:12:14,309   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T12:12:14,309         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:12:44,594   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:12:44,937   building 'moleculekit.distance_utils' extension
2024-02-26T12:12:44,937   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:12:44,938   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-02-26T12:12:45,175   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:12:45,175                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:12:45,175                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:12:45,176                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-02-26T12:12:45,176   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:12:45,176      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:12:45,176         |  ^~~~~~~
2024-02-26T12:13:20,399   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:13:20,752   building 'moleculekit.occupancy_utils' extension
2024-02-26T12:13:20,752   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:13:20,753   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-02-26T12:13:21,024   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:13:21,025                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:13:21,025                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:13:21,025                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-02-26T12:13:21,025   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:13:21,025      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:13:21,025         |  ^~~~~~~
2024-02-26T12:13:44,196   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:13:44,417   building 'moleculekit.cython_utils' extension
2024-02-26T12:13:44,418   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:13:44,419   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-02-26T12:13:44,666   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:13:44,666                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:13:44,666                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:13:44,666                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-02-26T12:13:44,666   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:13:44,666      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:13:44,667         |  ^~~~~~~
2024-02-26T12:14:10,263   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:14:10,599   building 'moleculekit.xtc' extension
2024-02-26T12:14:10,600   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:14:10,601   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:14:10,602   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:14:10,603   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T12:14:10,847   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,848      66 |  "OK",
2024-02-26T12:14:10,848         |  ^~~~
2024-02-26T12:14:10,848   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,848      67 |  "Header",
2024-02-26T12:14:10,848         |  ^~~~~~~~
2024-02-26T12:14:10,848   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,849      68 |  "String",
2024-02-26T12:14:10,849         |  ^~~~~~~~
2024-02-26T12:14:10,849   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,849      69 |  "Double",
2024-02-26T12:14:10,849         |  ^~~~~~~~
2024-02-26T12:14:10,849   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,850      70 |  "Integer",
2024-02-26T12:14:10,850         |  ^~~~~~~~~
2024-02-26T12:14:10,850   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,850      71 |  "Float",
2024-02-26T12:14:10,850         |  ^~~~~~~
2024-02-26T12:14:10,850   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,851      72 |  "Unsigned integer",
2024-02-26T12:14:10,851         |  ^~~~~~~~~~~~~~~~~~
2024-02-26T12:14:10,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,851      73 |  "Compressed 3D coordinate",
2024-02-26T12:14:10,851         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:10,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,852      74 |  "Closing file",
2024-02-26T12:14:10,852         |  ^~~~~~~~~~~~~~
2024-02-26T12:14:10,852   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,852      75 |  "Magic number",
2024-02-26T12:14:10,852         |  ^~~~~~~~~~~~~~
2024-02-26T12:14:10,852   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,853      76 |  "Not enough memory",
2024-02-26T12:14:10,853         |  ^~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:10,853   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,853      77 |  "End of file",
2024-02-26T12:14:10,853         |  ^~~~~~~~~~~~~
2024-02-26T12:14:10,853   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:10,854      78 |  "File not found"
2024-02-26T12:14:10,854         |  ^~~~~~~~~~~~~~~~
2024-02-26T12:14:10,862   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T12:14:10,862   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,862     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T12:14:10,863         |            ~~~~~^~~~~~
2024-02-26T12:14:10,864   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T12:14:10,864   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,864     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T12:14:10,864         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:14:10,867   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T12:14:10,867   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,867     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T12:14:10,867         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:10,868   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,868     616 |   for (i = 0; i < num_of_bytes; i++)
2024-02-26T12:14:10,868         |               ~~^~~~~~~~~~~~~~
2024-02-26T12:14:10,869   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,869     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T12:14:10,869         |               ~~^~~~~~~~~~~~~~~~
2024-02-26T12:14:10,871   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T12:14:10,871   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,871     664 |   if (lastbits < num_of_bits)
2024-02-26T12:14:10,871         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T12:14:10,875   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T12:14:10,876   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,876     785 |  if(size3>xfp->buf1size)
2024-02-26T12:14:10,876         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:10,878   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,879     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:10,879         |                   ^
2024-02-26T12:14:10,882   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,883     932 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:10,883         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:10,883   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,883     935 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:10,883         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:10,884   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,884     938 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:10,884         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:10,885   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,885     945 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:10,885         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:10,885   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,886     948 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:10,886         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:10,886   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,886     951 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:10,886         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:10,887   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:10,888     756 |  int smallidx,  minidx, maxidx;
2024-02-26T12:14:10,888         |                 ^~~~~~
2024-02-26T12:14:10,888   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:10,888     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:14:10,888         |                         ^~~~~~
2024-02-26T12:14:10,888   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:14:10,889     763 |  int errval=1;
2024-02-26T12:14:10,889         |      ^~~~~~
2024-02-26T12:14:10,891   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T12:14:10,892   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,892    1011 |  if(size3>xfp->buf1size)
2024-02-26T12:14:10,892         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:10,894   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,894    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:14:10,894         |                     ~~~~~~~~^~~~~~~
2024-02-26T12:14:10,895   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,896    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:14:10,896         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:14:10,897   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,897    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:14:10,897         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:14:10,899   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,899    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T12:14:10,899         |                  ^
2024-02-26T12:14:10,900   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,900    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:10,900         |                   ^
2024-02-26T12:14:10,904   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,904    1275 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:14:10,904         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:10,905   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:10,905    1001 |  int errval;
2024-02-26T12:14:10,905         |      ^~~~~~
2024-02-26T12:14:10,909   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T12:14:10,909   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,909    1316 |  if(size3>xfp->buf1size)
2024-02-26T12:14:10,909         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:10,911   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,912    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:10,912         |                   ^
2024-02-26T12:14:10,915   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:10,915    1289 |  int smallidx,  maxidx, minidx;
2024-02-26T12:14:10,915         |                         ^~~~~~
2024-02-26T12:14:10,915   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:10,916    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:14:10,916         |                         ^~~~~~
2024-02-26T12:14:10,916   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:14:10,916    1297 |  int errval=1;
2024-02-26T12:14:10,916         |      ^~~~~~
2024-02-26T12:14:10,918   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T12:14:10,919   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,919    1513 |  if(size3>xfp->buf1size) {
2024-02-26T12:14:10,919         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:10,923   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,924    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T12:14:10,924         |                  ^
2024-02-26T12:14:10,925   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:10,925    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:10,925         |                   ^
2024-02-26T12:14:10,929   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:10,929    1743 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:14:10,929         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:10,929   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:10,929    1504 |  int errval=1;
2024-02-26T12:14:10,930         |      ^~~~~~
2024-02-26T12:14:13,155   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-02-26T12:14:13,412   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-02-26T12:14:14,016   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-02-26T12:14:14,016   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:14,016     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T12:14:14,016         |                  ~~~~~^~~~~~~~
2024-02-26T12:14:14,017   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T12:14:14,017     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-02-26T12:14:14,017         |      ^~~
2024-02-26T12:14:14,024   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-02-26T12:14:14,025   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T12:14:14,025     418 |  int nf3 = nframes * 3;
2024-02-26T12:14:14,025         |      ^~~
2024-02-26T12:14:14,027   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-02-26T12:14:14,028   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:14,028     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T12:14:14,028         |                   ~~~~~^~~~~~~~
2024-02-26T12:14:14,031   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:14,031     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T12:14:14,031         |                   ~~~~~^~~~~~~~
2024-02-26T12:14:14,032   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-02-26T12:14:14,032     491 |  int reading_index = 0;
2024-02-26T12:14:14,032         |      ^~~~~~~~~~~~~
2024-02-26T12:14:14,032   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-02-26T12:14:14,032     492 |  int writing_index = 0;
2024-02-26T12:14:14,033         |      ^~~~~~~~~~~~~
2024-02-26T12:14:14,814   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-02-26T12:14:15,061   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:14:15,062                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:14:15,062                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:14:15,062                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-02-26T12:14:15,062   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:14:15,062      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:14:15,062         |  ^~~~~~~
2024-02-26T12:14:37,438   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:14:37,772   building 'moleculekit.trr' extension
2024-02-26T12:14:37,773   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-02-26T12:14:37,894   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T12:14:38,129   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,130      66 |  "OK",
2024-02-26T12:14:38,130         |  ^~~~
2024-02-26T12:14:38,130   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,130      67 |  "Header",
2024-02-26T12:14:38,130         |  ^~~~~~~~
2024-02-26T12:14:38,130   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,131      68 |  "String",
2024-02-26T12:14:38,131         |  ^~~~~~~~
2024-02-26T12:14:38,131   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,131      69 |  "Double",
2024-02-26T12:14:38,131         |  ^~~~~~~~
2024-02-26T12:14:38,131   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,131      70 |  "Integer",
2024-02-26T12:14:38,132         |  ^~~~~~~~~
2024-02-26T12:14:38,132   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,132      71 |  "Float",
2024-02-26T12:14:38,132         |  ^~~~~~~
2024-02-26T12:14:38,132   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,132      72 |  "Unsigned integer",
2024-02-26T12:14:38,132         |  ^~~~~~~~~~~~~~~~~~
2024-02-26T12:14:38,133   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,133      73 |  "Compressed 3D coordinate",
2024-02-26T12:14:38,133         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:38,133   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,133      74 |  "Closing file",
2024-02-26T12:14:38,133         |  ^~~~~~~~~~~~~~
2024-02-26T12:14:38,133   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,134      75 |  "Magic number",
2024-02-26T12:14:38,134         |  ^~~~~~~~~~~~~~
2024-02-26T12:14:38,134   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,134      76 |  "Not enough memory",
2024-02-26T12:14:38,134         |  ^~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:38,134   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,134      77 |  "End of file",
2024-02-26T12:14:38,135         |  ^~~~~~~~~~~~~
2024-02-26T12:14:38,135   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:14:38,135      78 |  "File not found"
2024-02-26T12:14:38,135         |  ^~~~~~~~~~~~~~~~
2024-02-26T12:14:38,139   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T12:14:38,139   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,139     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T12:14:38,140         |            ~~~~~^~~~~~
2024-02-26T12:14:38,140   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T12:14:38,140   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,140     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T12:14:38,140         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:14:38,142   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T12:14:38,142   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,143     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T12:14:38,143         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:38,143   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,143     616 |   for (i = 0; i < num_of_bytes; i++)
2024-02-26T12:14:38,143         |               ~~^~~~~~~~~~~~~~
2024-02-26T12:14:38,143   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,143     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T12:14:38,144         |               ~~^~~~~~~~~~~~~~~~
2024-02-26T12:14:38,144   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T12:14:38,144   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,144     664 |   if (lastbits < num_of_bits)
2024-02-26T12:14:38,144         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T12:14:38,147   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T12:14:38,148   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,148     785 |  if(size3>xfp->buf1size)
2024-02-26T12:14:38,148         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:38,149   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,150     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:38,150         |                   ^
2024-02-26T12:14:38,152   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,152     932 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:38,152         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:38,152   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,153     935 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:38,153         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:38,153   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,153     938 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:38,153         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:38,153   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,153     945 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:38,154         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:38,154   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,154     948 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:38,154         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:38,154   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,154     951 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:14:38,154         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:14:38,154   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:38,155     756 |  int smallidx,  minidx, maxidx;
2024-02-26T12:14:38,155         |                 ^~~~~~
2024-02-26T12:14:38,155   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:38,155     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:14:38,155         |                         ^~~~~~
2024-02-26T12:14:38,155   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:14:38,155     763 |  int errval=1;
2024-02-26T12:14:38,156         |      ^~~~~~
2024-02-26T12:14:38,156   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T12:14:38,157   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,157    1011 |  if(size3>xfp->buf1size)
2024-02-26T12:14:38,157         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:38,158   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,159    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:14:38,159         |                     ~~~~~~~~^~~~~~~
2024-02-26T12:14:38,159   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,159    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:14:38,159         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:14:38,160   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,160    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:14:38,160         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:14:38,161   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,162    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T12:14:38,162         |                  ^
2024-02-26T12:14:38,162   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,162    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:38,162         |                   ^
2024-02-26T12:14:38,166   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,166    1275 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:14:38,166         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:38,166   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:38,166    1001 |  int errval;
2024-02-26T12:14:38,166         |      ^~~~~~
2024-02-26T12:14:38,169   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T12:14:38,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,169    1316 |  if(size3>xfp->buf1size)
2024-02-26T12:14:38,169         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:38,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,171    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:38,171         |                   ^
2024-02-26T12:14:38,174   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:38,174    1289 |  int smallidx,  maxidx, minidx;
2024-02-26T12:14:38,174         |                         ^~~~~~
2024-02-26T12:14:38,174   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:38,174    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:14:38,174         |                         ^~~~~~
2024-02-26T12:14:38,175   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:14:38,175    1297 |  int errval=1;
2024-02-26T12:14:38,175         |      ^~~~~~
2024-02-26T12:14:38,176   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T12:14:38,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,176    1513 |  if(size3>xfp->buf1size) {
2024-02-26T12:14:38,177         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:14:38,180   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,181    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T12:14:38,181         |                  ^
2024-02-26T12:14:38,181   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:14:38,181    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:14:38,181         |                   ^
2024-02-26T12:14:38,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:14:38,185    1743 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:14:38,185         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:14:38,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:14:38,185    1504 |  int errval=1;
2024-02-26T12:14:38,185         |      ^~~~~~
2024-02-26T12:14:40,415   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-02-26T12:14:40,509   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-02-26T12:14:40,509   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T12:14:40,509     111 |         if (slen != strlen(version)+1)
2024-02-26T12:14:40,509         |                  ^~
2024-02-26T12:14:40,509   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T12:14:40,510     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-02-26T12:14:40,510         |                                              ^~
2024-02-26T12:14:41,085   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-02-26T12:14:41,406   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:14:41,406                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:14:41,406                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:14:41,406                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-02-26T12:14:41,406   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:14:41,406      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:14:41,406         |  ^~~~~~~
2024-02-26T12:14:42,028   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-02-26T12:14:42,037   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-02-26T12:14:42,037   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-02-26T12:14:42,037         |                                     ^~
2024-02-26T12:15:02,411   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-02-26T12:15:02,411   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:02,411    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T12:15:02,411         |                                        ^~~~~~~~~~~~~~~
2024-02-26T12:15:02,420   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T12:15:02,420   14242 |   int __pyx_v_status;
2024-02-26T12:15:02,420         |       ^~~~~~~~~~~~~~
2024-02-26T12:15:12,741   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-02-26T12:15:12,748   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,748   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T12:15:12,748         |                   ^
2024-02-26T12:15:12,755   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,755   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:15:12,756         |                   ^
2024-02-26T12:15:12,756   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,756    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T12:15:12,757         |                                                                                               ^
2024-02-26T12:15:12,762   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-02-26T12:15:12,762   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T12:15:12,762         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:15:12,768   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,768   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-02-26T12:15:12,768         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:15:12,775   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,775   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T12:15:12,775         |                   ^
2024-02-26T12:15:12,782   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,782   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:15:12,782         |                   ^
2024-02-26T12:15:12,783   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,783    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T12:15:12,783         |                                                                                               ^
2024-02-26T12:15:12,789   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-02-26T12:15:12,789   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T12:15:12,789         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T12:15:12,795   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,795   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-02-26T12:15:12,795         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:15:12,801   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,801   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:15:12,801         |                 ^
2024-02-26T12:15:12,808   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,808   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T12:15:12,808         |                 ^
2024-02-26T12:15:12,815   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,815   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:15:12,815         |                   ^
2024-02-26T12:15:12,822   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,822   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T12:15:12,822         |                   ^
2024-02-26T12:15:12,828   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,828   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:15:12,828         |                   ^
2024-02-26T12:15:12,835   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:12,835   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T12:15:12,835         |                   ^
2024-02-26T12:15:19,354   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:15:19,550   building 'moleculekit.dcd' extension
2024-02-26T12:15:19,551   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:15:19,552   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-26T12:15:19,553   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-02-26T12:15:19,896   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:15:19,896                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:15:19,896                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:15:19,897                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-02-26T12:15:19,897   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:15:19,897      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:15:19,897         |  ^~~~~~~
2024-02-26T12:15:20,934   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-02-26T12:15:20,934                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-02-26T12:15:20,934   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,934     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T12:15:20,934         |            ^~~~~~~~~~~~~
2024-02-26T12:15:20,934   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,935     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T12:15:20,935         |            ^~~~~~~~~~~~~~
2024-02-26T12:15:20,935   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,935     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-02-26T12:15:20,935         |            ^~~~~~~~~~~~~~~
2024-02-26T12:15:20,935   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,936     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-02-26T12:15:20,936         |                   ^~~~~~~~~
2024-02-26T12:15:20,936   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,936     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-02-26T12:15:20,936         |                   ^~~~~~~~~
2024-02-26T12:15:20,936   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,936     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-02-26T12:15:20,937         |                   ^~~~~~~~~
2024-02-26T12:15:20,937   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,937     394 | static int fio_fclose(fio_fd fd) {
2024-02-26T12:15:20,937         |            ^~~~~~~~~~
2024-02-26T12:15:20,937   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-02-26T12:15:20,937     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-02-26T12:15:20,937         |            ^~~~~~~~
2024-02-26T12:15:33,617   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-02-26T12:15:33,618   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:33,618    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T12:15:33,618         |                                        ^~~~~~~~~~~~~~~
2024-02-26T12:15:33,622   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T12:15:33,623    8004 |   int __pyx_v_i;
2024-02-26T12:15:33,623         |       ^~~~~~~~~
2024-02-26T12:15:37,005   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-02-26T12:15:37,218   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-02-26T12:15:37,218   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:15:37,219     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T12:15:37,219         |                                                       ^~
2024-02-26T12:15:37,219   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:15:37,219     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T12:15:37,219         |                                                      ^~
2024-02-26T12:15:37,220   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:15:37,220     194 |     if (input_integer[0] != dcdcordmagic)
2024-02-26T12:15:37,220         |                          ^~
2024-02-26T12:15:37,223   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:15:37,223     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T12:15:37,223         |                                               ^~
2024-02-26T12:15:37,223   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:15:37,223     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T12:15:37,224         |                                               ^~
2024-02-26T12:15:37,227   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-02-26T12:15:37,228   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:15:37,228     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-02-26T12:15:37,228         |                       ^~
2024-02-26T12:15:37,228   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:15:37,228     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-02-26T12:15:37,229         |                                                 ^~
2024-02-26T12:15:37,251   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-02-26T12:15:37,251   At top level:
2024-02-26T12:15:37,251   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-02-26T12:15:37,251      96 | static void swap2_aligned(void *v, long ndata) {
2024-02-26T12:15:37,252         |             ^~~~~~~~~~~~~
2024-02-26T12:15:37,252   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-02-26T12:15:37,252      32 | static void swap2_unaligned(void *v, long ndata) {
2024-02-26T12:15:37,252         |             ^~~~~~~~~~~~~~~
2024-02-26T12:15:37,252   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-02-26T12:15:37,252   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T12:15:37,253     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T12:15:37,253         |            ^~~~~~~~~~~~~
2024-02-26T12:15:37,253   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T12:15:37,253     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T12:15:37,253         |            ^~~~~~~~~~~~~~
2024-02-26T12:15:38,372   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:15:38,545   building 'moleculekit.binpos' extension
2024-02-26T12:15:38,546   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:15:38,548   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-26T12:15:38,549   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-02-26T12:15:38,935   In file included from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:15:38,936                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:15:38,936                    from /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:15:38,936                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-02-26T12:15:38,936   /tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:15:38,937      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:15:38,937         |  ^~~~~~~
2024-02-26T12:15:52,362   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-02-26T12:15:52,366   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:52,367    8027 |   if (__pyx_t_1) {
2024-02-26T12:15:52,367         |      ^
2024-02-26T12:15:52,371   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T12:15:52,371    7504 |   int __pyx_v_status;
2024-02-26T12:15:52,371         |       ^~~~~~~~~~~~~~
2024-02-26T12:15:52,371   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:15:52,371    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T12:15:52,372         |                                        ^~~~~~~~~~~~~~~
2024-02-26T12:15:52,375   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T12:15:52,376    7501 |   int __pyx_v_i;
2024-02-26T12:15:52,376         |       ^~~~~~~~~
2024-02-26T12:15:54,656   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-02-26T12:15:54,959   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:15:55,095   building 'moleculekit.tmalign' extension
2024-02-26T12:15:55,096   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:15:55,097   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-26T12:15:55,098   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-02-26T12:16:24,703   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-8elmb0xn/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-02-26T12:16:43,214   In file included from /usr/include/c++/10/vector:72,
2024-02-26T12:16:43,214                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-26T12:16:43,214   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-02-26T12:16:43,214   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-02-26T12:16:43,215     426 |       vector<_Tp, _Alloc>::
2024-02-26T12:16:43,215         |       ^~~~~~~~~~~~~~~~~~~
2024-02-26T12:16:43,793   In file included from /usr/include/c++/10/vector:67,
2024-02-26T12:16:43,794                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-26T12:16:43,794   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-26T12:16:43,794   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T12:16:43,794    1198 |    _M_realloc_insert(end(), __x);
2024-02-26T12:16:43,794         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:16:43,795   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T12:16:43,795    1198 |    _M_realloc_insert(end(), __x);
2024-02-26T12:16:43,795         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:16:43,795   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T12:16:43,796    1198 |    _M_realloc_insert(end(), __x);
2024-02-26T12:16:43,796         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:16:46,346   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:16:46,837   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-02-26T12:16:46,837   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.22'
2024-02-26T12:16:46,837   installing to build/bdist.linux-armv7l/wheel
2024-02-26T12:16:46,837   running install
2024-02-26T12:16:46,862   running install_lib
2024-02-26T12:16:46,869   creating build/bdist.linux-armv7l
2024-02-26T12:16:46,869   creating build/bdist.linux-armv7l/wheel
2024-02-26T12:16:46,871   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:46,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:46,875   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,896   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T12:16:46,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T12:16:46,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T12:16:46,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:16:46,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:46,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:46,917   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:46,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:46,955   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T12:16:46,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T12:16:46,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T12:16:46,993   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T12:16:46,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T12:16:47,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T12:16:47,024   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T12:16:47,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T12:16:47,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T12:16:47,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:47,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:47,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:47,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:47,110   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T12:16:47,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T12:16:47,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T12:16:47,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:16:47,163   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T12:16:47,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T12:16:47,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T12:16:47,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:47,195   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:16:47,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:16:47,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:16:47,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:16:47,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:16:47,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:47,208   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:16:47,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:16:47,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:16:47,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:16:47,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:47,222   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T12:16:47,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T12:16:47,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T12:16:47,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:47,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,161   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:16:49,164   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:16:49,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:16:49,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:16:49,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:16:49,213   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T12:16:49,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T12:16:49,220   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:16:49,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:16:49,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:16:49,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:16:49,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:16:49,239   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:16:49,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:16:49,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:16:49,247   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T12:16:49,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T12:16:49,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:16:49,268   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:16:49,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:16:49,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:16:49,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:16:49,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:16:49,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:16:49,282   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,291   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:16:49,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:16:49,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:16:49,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:16:49,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:16:49,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:16:49,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:16:49,371   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:16:49,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:16:49,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:16:49,396   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T12:16:49,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T12:16:49,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T12:16:49,440   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T12:16:49,442   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:16:49,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:16:49,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:16:49,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:16:49,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:16:49,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T12:16:49,454   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:16:49,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:16:49,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:16:49,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:16:49,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:16:49,465   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T12:16:49,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T12:16:49,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T12:16:49,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,475   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T12:16:49,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T12:16:49,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T12:16:49,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,538   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,553   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,555   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:16:49,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:16:49,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:16:49,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:16:49,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:16:49,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:16:49,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:49,800   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T12:16:49,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T12:16:49,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T12:16:49,831   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:16:49,833   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T12:16:49,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T12:16:49,836   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-02-26T12:16:49,840   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,860   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:49,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,044   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,123   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:16:50,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:16:50,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:16:50,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:16:50,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,487   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,502   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,508   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:16:50,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,609   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:16:50,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:16:50,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:16:50,654   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T12:16:50,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T12:16:50,664   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T12:16:50,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T12:16:50,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:16:50,669   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T12:16:50,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T12:16:50,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T12:16:50,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:16:50,748   running install_egg_info
2024-02-26T12:16:50,754   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.22-py3.9.egg-info
2024-02-26T12:16:50,766   running install_scripts
2024-02-26T12:16:50,814   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.22.dist-info/WHEEL
2024-02-26T12:16:50,818   creating '/tmp/pip-wheel-xb3nntkc/.tmp-2_o3o7pp/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-26T12:16:50,821   adding 'moleculekit/__init__.py'
2024-02-26T12:16:50,822   adding 'moleculekit/_version.py'
2024-02-26T12:16:50,824   adding 'moleculekit/align.py'
2024-02-26T12:16:51,137   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:51,301   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:51,308   adding 'moleculekit/bondguesser.py'
2024-02-26T12:16:51,553   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:51,562   adding 'moleculekit/config.py'
2024-02-26T12:16:51,822   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:51,996   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:52,002   adding 'moleculekit/dihedral.py'
2024-02-26T12:16:52,003   adding 'moleculekit/distance.py'
2024-02-26T12:16:52,325   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:52,337   adding 'moleculekit/home.py'
2024-02-26T12:16:52,338   adding 'moleculekit/logging.ini'
2024-02-26T12:16:52,353   adding 'moleculekit/molecule.py'
2024-02-26T12:16:52,581   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:52,590   adding 'moleculekit/opm.py'
2024-02-26T12:16:52,593   adding 'moleculekit/periodictable.py'
2024-02-26T12:16:52,594   adding 'moleculekit/pymolgraphics.py'
2024-02-26T12:16:52,595   adding 'moleculekit/rcsb.py'
2024-02-26T12:16:52,597   adding 'moleculekit/rdkitintegration.py'
2024-02-26T12:16:52,610   adding 'moleculekit/readers.py'
2024-02-26T12:16:53,220   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:53,537   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:53,550   adding 'moleculekit/util.py'
2024-02-26T12:16:53,551   adding 'moleculekit/version.py'
2024-02-26T12:16:53,552   adding 'moleculekit/viewer.py'
2024-02-26T12:16:53,554   adding 'moleculekit/vmd_wrapper'
2024-02-26T12:16:53,556   adding 'moleculekit/vmdgraphics.py'
2024-02-26T12:16:53,558   adding 'moleculekit/vmdviewer.py'
2024-02-26T12:16:53,813   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:53,827   adding 'moleculekit/writers.py'
2024-02-26T12:16:54,097   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:54,107   adding 'moleculekit/atomselect/__init__.py'
2024-02-26T12:16:54,108   adding 'moleculekit/atomselect/analyze.py'
2024-02-26T12:16:54,111   adding 'moleculekit/atomselect/atomselect.py'
2024-02-26T12:16:54,113   adding 'moleculekit/atomselect/languageparser.py'
2024-02-26T12:16:54,217   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-02-26T12:16:54,228   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-02-26T12:16:54,321   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-02-26T12:16:54,330   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-02-26T12:16:54,420   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-02-26T12:16:54,428   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-02-26T12:16:54,530   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-02-26T12:16:54,540   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-02-26T12:16:54,542   adding 'moleculekit/fileformats/__init__.py'
2024-02-26T12:16:54,547   adding 'moleculekit/fileformats/netcdf.py'
2024-02-26T12:16:54,549   adding 'moleculekit/fileformats/utils.py'
2024-02-26T12:16:54,611   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-02-26T12:16:54,618   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-02-26T12:16:54,619   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-02-26T12:16:54,621   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-02-26T12:16:54,623   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-02-26T12:16:54,628   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-02-26T12:16:54,630   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-02-26T12:16:54,694   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-02-26T12:16:54,702   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-02-26T12:16:54,703   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-02-26T12:16:54,705   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-02-26T12:16:54,707   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-02-26T12:16:54,708   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-02-26T12:16:54,710   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-02-26T12:16:54,715   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-02-26T12:16:54,720   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-02-26T12:16:54,816   adding 'moleculekit/fileformats/xtc/trr.c'
2024-02-26T12:16:54,827   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-02-26T12:16:54,829   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-02-26T12:16:54,830   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-02-26T12:16:54,920   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-02-26T12:16:54,929   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-02-26T12:16:54,930   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-02-26T12:16:54,932   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-02-26T12:16:54,933   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-02-26T12:16:54,935   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-02-26T12:16:54,937   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-02-26T12:16:54,938   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-02-26T12:16:54,940   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-02-26T12:16:54,941   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-02-26T12:16:54,948   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-02-26T12:16:54,950   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-02-26T12:16:54,952   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-02-26T12:16:54,954   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-02-26T12:16:54,956   adding 'moleculekit/interactions/__init__.py'
2024-02-26T12:16:55,243   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:55,515   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:55,527   adding 'moleculekit/interactions/interactions.py'
2024-02-26T12:16:55,810   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:56,100   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:16:56,201   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-02-26T12:16:56,210   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-02-26T12:16:56,302   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-02-26T12:16:56,311   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-02-26T12:16:56,403   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-02-26T12:16:56,412   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-02-26T12:16:56,505   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-02-26T12:16:56,514   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-02-26T12:16:56,601   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-02-26T12:16:56,610   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-02-26T12:16:56,611   adding 'moleculekit/pdbx/__init__.py'
2024-02-26T12:16:56,615   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-02-26T12:16:56,618   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-02-26T12:16:56,621   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-02-26T12:16:56,622   adding 'moleculekit/pdbx/reader/__init__.py'
2024-02-26T12:16:56,624   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-02-26T12:16:56,626   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-02-26T12:16:56,627   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-02-26T12:16:56,628   adding 'moleculekit/pdbx/tests/__init__.py'
2024-02-26T12:16:56,630   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-02-26T12:16:56,632   adding 'moleculekit/pdbx/writer/__init__.py'
2024-02-26T12:16:56,633   adding 'moleculekit/ply/__init__.py'
2024-02-26T12:16:56,638   adding 'moleculekit/ply/lex.py'
2024-02-26T12:16:56,649   adding 'moleculekit/ply/yacc.py'
2024-02-26T12:16:56,652   adding 'moleculekit/projections/__init__.py'
2024-02-26T12:16:56,654   adding 'moleculekit/projections/metriccoordinate.py'
2024-02-26T12:16:56,657   adding 'moleculekit/projections/metricdihedral.py'
2024-02-26T12:16:56,661   adding 'moleculekit/projections/metricdistance.py'
2024-02-26T12:16:56,663   adding 'moleculekit/projections/metricfluctuation.py'
2024-02-26T12:16:56,665   adding 'moleculekit/projections/metricgyration.py'
2024-02-26T12:16:56,669   adding 'moleculekit/projections/metricplumed2.py'
2024-02-26T12:16:56,670   adding 'moleculekit/projections/metricrmsd.py'
2024-02-26T12:16:56,672   adding 'moleculekit/projections/metricsasa.py'
2024-02-26T12:16:56,674   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-02-26T12:16:56,676   adding 'moleculekit/projections/metricshell.py'
2024-02-26T12:16:56,678   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-02-26T12:16:56,679   adding 'moleculekit/projections/metrictmscore.py'
2024-02-26T12:16:56,680   adding 'moleculekit/projections/projection.py'
2024-02-26T12:16:56,682   adding 'moleculekit/projections/util.py'
2024-02-26T12:16:56,684   adding 'moleculekit/share/ALA.cif'
2024-02-26T12:16:56,685   adding 'moleculekit/share/backbone.cif'
2024-02-26T12:16:57,991   adding 'moleculekit/share/opm_sequences.json'
2024-02-26T12:16:58,076   adding 'moleculekit/share/atomselect/atomselect.json'
2024-02-26T12:16:58,081   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-02-26T12:16:58,083   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-02-26T12:16:58,084   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-02-26T12:16:58,086   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-02-26T12:16:58,087   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-02-26T12:16:58,088   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-02-26T12:16:58,090   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-02-26T12:16:58,091   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-02-26T12:16:58,092   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-02-26T12:16:58,094   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-02-26T12:16:58,095   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-02-26T12:16:58,096   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-02-26T12:16:58,098   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-02-26T12:16:58,099   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-02-26T12:16:58,100   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-02-26T12:16:58,101   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-02-26T12:16:58,103   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-02-26T12:16:58,104   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-02-26T12:16:58,105   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-02-26T12:16:58,107   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-02-26T12:16:58,108   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-02-26T12:16:58,109   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-02-26T12:16:58,110   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-02-26T12:16:58,111   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-02-26T12:16:58,113   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-02-26T12:16:58,114   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-02-26T12:16:58,115   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-02-26T12:16:58,116   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-02-26T12:16:58,118   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-02-26T12:16:58,119   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-02-26T12:16:58,120   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-02-26T12:16:58,121   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-02-26T12:16:58,122   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-02-26T12:16:58,123   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-02-26T12:16:58,125   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-02-26T12:16:58,126   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-02-26T12:16:58,127   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-02-26T12:16:58,128   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-02-26T12:16:58,130   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-02-26T12:16:58,131   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-02-26T12:16:58,132   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-02-26T12:16:58,133   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-02-26T12:16:58,135   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-02-26T12:16:58,136   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-02-26T12:16:58,137   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-02-26T12:16:58,138   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-02-26T12:16:58,139   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-02-26T12:16:58,141   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-02-26T12:16:58,142   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-02-26T12:16:58,143   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-02-26T12:16:58,144   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-02-26T12:16:58,145   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-02-26T12:16:58,147   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-02-26T12:16:58,148   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-02-26T12:16:58,149   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-02-26T12:16:58,150   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-02-26T12:16:58,151   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-02-26T12:16:58,152   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-02-26T12:16:58,154   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-02-26T12:16:58,155   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-02-26T12:16:58,156   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-02-26T12:16:58,157   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-02-26T12:16:58,159   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-02-26T12:16:58,160   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-02-26T12:16:58,162   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-02-26T12:16:58,163   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-02-26T12:16:58,164   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-02-26T12:16:58,165   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-02-26T12:16:58,166   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-02-26T12:16:58,168   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-02-26T12:16:58,169   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-02-26T12:16:58,170   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-02-26T12:16:58,171   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-02-26T12:16:58,172   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-02-26T12:16:58,174   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-02-26T12:16:58,175   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-02-26T12:16:58,176   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-02-26T12:16:58,177   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-02-26T12:16:58,179   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-02-26T12:16:58,180   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-02-26T12:16:58,181   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-02-26T12:16:58,182   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-02-26T12:16:58,183   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-02-26T12:16:58,185   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-02-26T12:16:58,186   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-02-26T12:16:58,187   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-02-26T12:16:58,189   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-02-26T12:16:58,190   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-02-26T12:16:58,191   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-02-26T12:16:58,193   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-02-26T12:16:58,194   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-02-26T12:16:58,195   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-02-26T12:16:58,197   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-02-26T12:16:58,198   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-02-26T12:16:58,199   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-02-26T12:16:58,201   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-02-26T12:16:58,202   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-02-26T12:16:58,203   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-02-26T12:16:58,204   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-02-26T12:16:58,206   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-02-26T12:16:58,207   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-02-26T12:16:58,208   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-02-26T12:16:58,210   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-02-26T12:16:58,211   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-02-26T12:16:58,212   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-02-26T12:16:58,213   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-02-26T12:16:58,215   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-02-26T12:16:58,216   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-02-26T12:16:58,217   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-02-26T12:16:58,218   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-02-26T12:16:58,220   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-02-26T12:16:58,221   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-02-26T12:16:58,222   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-02-26T12:16:58,223   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-02-26T12:16:58,224   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-02-26T12:16:58,226   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-02-26T12:16:58,227   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-02-26T12:16:58,228   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-02-26T12:16:58,229   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-02-26T12:16:58,230   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-02-26T12:16:58,232   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-02-26T12:16:58,233   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-02-26T12:16:58,234   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-02-26T12:16:58,235   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-02-26T12:16:58,237   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-02-26T12:16:58,238   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-02-26T12:16:58,239   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-02-26T12:16:58,240   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-02-26T12:16:58,242   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-02-26T12:16:58,243   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-02-26T12:16:58,244   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-02-26T12:16:58,245   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-02-26T12:16:58,247   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-02-26T12:16:58,248   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-02-26T12:16:58,249   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-02-26T12:16:58,250   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-02-26T12:16:58,252   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-02-26T12:16:58,253   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-02-26T12:16:58,254   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-02-26T12:16:58,255   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-02-26T12:16:58,256   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-02-26T12:16:58,258   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-02-26T12:16:58,259   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-02-26T12:16:58,260   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-02-26T12:16:58,261   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-02-26T12:16:58,262   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-02-26T12:16:58,264   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-02-26T12:16:58,265   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-02-26T12:16:58,266   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-02-26T12:16:58,267   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-02-26T12:16:58,269   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-02-26T12:16:58,270   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-02-26T12:16:58,271   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-02-26T12:16:58,272   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-02-26T12:16:58,274   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-02-26T12:16:58,275   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-02-26T12:16:58,276   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-02-26T12:16:58,277   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-02-26T12:16:58,279   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-02-26T12:16:58,280   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-02-26T12:16:58,281   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-02-26T12:16:58,282   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-02-26T12:16:58,283   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-02-26T12:16:58,285   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-02-26T12:16:58,286   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-02-26T12:16:58,287   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-02-26T12:16:58,288   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-02-26T12:16:58,289   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-02-26T12:16:58,291   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-02-26T12:16:58,292   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-02-26T12:16:58,293   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-02-26T12:16:58,294   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-02-26T12:16:58,296   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-02-26T12:16:58,297   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-02-26T12:16:58,298   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-02-26T12:16:58,300   adding 'moleculekit/smallmol/__init__.py'
2024-02-26T12:16:58,305   adding 'moleculekit/smallmol/smallmol.py'
2024-02-26T12:16:58,308   adding 'moleculekit/smallmol/smallmollib.py'
2024-02-26T12:16:58,309   adding 'moleculekit/smallmol/test_smallmol.py'
2024-02-26T12:16:58,311   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-02-26T12:16:58,313   adding 'moleculekit/smallmol/util.py'
2024-02-26T12:16:58,314   adding 'moleculekit/smallmol/tools/__init__.py'
2024-02-26T12:16:58,316   adding 'moleculekit/smallmol/tools/clustering.py'
2024-02-26T12:16:58,318   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-02-26T12:16:58,319   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-02-26T12:16:58,410   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-02-26T12:16:58,419   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-02-26T12:16:58,420   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-02-26T12:16:58,422   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-02-26T12:16:58,439   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-02-26T12:16:58,442   adding 'moleculekit/tools/__init__.py'
2024-02-26T12:16:58,445   adding 'moleculekit/tools/atomtyper.py'
2024-02-26T12:16:58,447   adding 'moleculekit/tools/autosegment.py'
2024-02-26T12:16:58,449   adding 'moleculekit/tools/crystalpacking.py'
2024-02-26T12:16:58,452   adding 'moleculekit/tools/detect.py'
2024-02-26T12:16:58,454   adding 'moleculekit/tools/docking.py'
2024-02-26T12:16:58,456   adding 'moleculekit/tools/graphalignment.py'
2024-02-26T12:16:58,458   adding 'moleculekit/tools/hhblitsprofile.py'
2024-02-26T12:16:58,459   adding 'moleculekit/tools/modelling.py'
2024-02-26T12:16:58,461   adding 'moleculekit/tools/moleculechecks.py'
2024-02-26T12:16:58,467   adding 'moleculekit/tools/preparation.py'
2024-02-26T12:16:58,470   adding 'moleculekit/tools/preparation_customres.py'
2024-02-26T12:16:58,472   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-02-26T12:16:58,475   adding 'moleculekit/tools/voxeldescriptors.py'
2024-02-26T12:16:58,477   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-02-26T12:16:58,478   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-02-26T12:16:58,570   adding 'moleculekit/wrapping/wrapping.cpp'
2024-02-26T12:16:58,579   adding 'moleculekit/wrapping/wrapping.pyx'
2024-02-26T12:16:58,582   adding 'moleculekit-1.8.22.dist-info/LICENSE'
2024-02-26T12:16:58,583   adding 'moleculekit-1.8.22.dist-info/METADATA'
2024-02-26T12:16:58,584   adding 'moleculekit-1.8.22.dist-info/WHEEL'
2024-02-26T12:16:58,585   adding 'moleculekit-1.8.22.dist-info/top_level.txt'
2024-02-26T12:16:58,590   adding 'moleculekit-1.8.22.dist-info/RECORD'
2024-02-26T12:16:58,934   removing build/bdist.linux-armv7l/wheel
2024-02-26T12:16:59,218   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-02-26T12:16:59,548   Created wheel for moleculekit: filename=moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl size=14879342 sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab
2024-02-26T12:16:59,549   Stored in directory: /tmp/pip-ephem-wheel-cache-dslbawbw/wheels/02/80/62/c17566108e734b4abea59ae3e3a0fdcfec04326f0b9f797d6d
2024-02-26T12:16:59,577 Successfully built moleculekit
2024-02-26T12:17:00,048 Removed build tracker: '/tmp/pip-build-tracker-l1nh5mdo'