2024-02-26T12:28:46,391 Created temporary directory: /tmp/pip-build-tracker-3t_6lw73
2024-02-26T12:28:46,392 Initialized build tracking at /tmp/pip-build-tracker-3t_6lw73
2024-02-26T12:28:46,392 Created build tracker: /tmp/pip-build-tracker-3t_6lw73
2024-02-26T12:28:46,393 Entered build tracker: /tmp/pip-build-tracker-3t_6lw73
2024-02-26T12:28:46,393 Created temporary directory: /tmp/pip-wheel-eax7o8t2
2024-02-26T12:28:46,397 Created temporary directory: /tmp/pip-ephem-wheel-cache-a_plnxc9
2024-02-26T12:28:46,424 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T12:28:46,428 2 location(s) to search for versions of moleculekit:
2024-02-26T12:28:46,428 * https://pypi.org/simple/moleculekit/
2024-02-26T12:28:46,428 * https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:28:46,428 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-02-26T12:28:46,428 Getting page https://pypi.org/simple/moleculekit/
2024-02-26T12:28:46,430 Found index url https://pypi.org/simple/
2024-02-26T12:28:46,488 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-02-26T12:28:46,529   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,530   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-02-26T12:28:46,530   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,530   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-02-26T12:28:46,531   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,531   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-02-26T12:28:46,531   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,531   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-02-26T12:28:46,532   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,532   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-02-26T12:28:46,532   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:28:46,533   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:28:46,533   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:28:46,534   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,534   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-02-26T12:28:46,534   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,535   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-02-26T12:28:46,535   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,535   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-02-26T12:28:46,535   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,536   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-02-26T12:28:46,536   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,536   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-02-26T12:28:46,536   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,537   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-02-26T12:28:46,537   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,537   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-02-26T12:28:46,537   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,537   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-02-26T12:28:46,538   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,538   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-02-26T12:28:46,538   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,538   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-02-26T12:28:46,539   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,539   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-02-26T12:28:46,539   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,539   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-02-26T12:28:46,540   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,540   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-02-26T12:28:46,540   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:28:46,540   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,541   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-02-26T12:28:46,541   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,541   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-02-26T12:28:46,541   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-02-26T12:28:46,542   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-02-26T12:28:46,542   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:28:46,542   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-02-26T12:28:46,570   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2024-02-26T12:28:46,586   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-02-26T12:28:46,587   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-02-26T12:28:46,587   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-02-26T12:28:46,588   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-02-26T12:28:46,588   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-02-26T12:28:46,589   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-02-26T12:28:46,589   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-02-26T12:28:46,590   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-02-26T12:28:46,590   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-02-26T12:28:46,591   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-02-26T12:28:46,592   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-02-26T12:28:46,592   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-02-26T12:28:46,593   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-02-26T12:28:46,593   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-02-26T12:28:46,594   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-02-26T12:28:46,594   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-02-26T12:28:46,595   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-02-26T12:28:46,595   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-02-26T12:28:46,596   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-02-26T12:28:46,596   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-02-26T12:28:46,597   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-02-26T12:28:46,597   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-02-26T12:28:46,598   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-02-26T12:28:46,599   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-02-26T12:28:46,599   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-02-26T12:28:46,600   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-02-26T12:28:46,600   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-02-26T12:28:46,601   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-02-26T12:28:46,601   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-02-26T12:28:46,602   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-02-26T12:28:46,602   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-02-26T12:28:46,603   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-02-26T12:28:46,603   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-02-26T12:28:46,604   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-02-26T12:28:46,604   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-02-26T12:28:46,605 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:28:46,605 Getting page https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:28:46,606 Found index url https://www.piwheels.org/simple/
2024-02-26T12:28:46,979 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-02-26T12:28:47,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T12:28:47,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T12:28:47,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv6l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv7l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv6l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv7l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv6l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv6l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv7l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-02-26T12:28:47,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv6l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-02-26T12:28:47,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:28:47,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,112   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,113   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,114   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,115   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
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2024-02-26T12:28:47,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,128   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,128   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,128   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,128   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,128   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-02-26T12:28:47,129 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-02-26T12:28:47,129 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-02-26T12:28:47,171 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-02-26T12:28:47,189 Collecting moleculekit==1.8.24
2024-02-26T12:28:47,191   Created temporary directory: /tmp/pip-unpack-3hb9enwa
2024-02-26T12:28:47,236   Downloading moleculekit-1.8.24.tar.gz (6.8 MB)
2024-02-26T12:28:49,728   Added moleculekit==1.8.24 from https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz to build tracker '/tmp/pip-build-tracker-3t_6lw73'
2024-02-26T12:28:49,737   Created temporary directory: /tmp/pip-build-env-57cp6b4p
2024-02-26T12:28:49,747   Installing build dependencies: started
2024-02-26T12:28:49,748   Running command pip subprocess to install build dependencies
2024-02-26T12:28:50,914   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-02-26T12:28:51,500   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T12:28:53,185   Collecting setuptools
2024-02-26T12:28:58,373     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/setuptools/setuptools-69.1.1-py3-none-any.whl
2024-02-26T12:28:58,699     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-02-26T12:28:59,708   Collecting numpy>=1.18.5
2024-02-26T12:29:03,443     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-02-26T12:29:05,183   Collecting Cython>=0.29.21
2024-02-26T12:29:05,184     Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata
2024-02-26T12:29:05,191     Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB)
2024-02-26T12:29:05,272   Collecting toml
2024-02-26T12:29:05,293     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-02-26T12:29:05,392   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-02-26T12:29:05,408     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-02-26T12:29:05,539   Collecting tomli (from versioneer[toml]==0.28)
2024-02-26T12:29:05,554     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-02-26T12:29:05,758   Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB)
2024-02-26T12:29:08,513   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-02-26T12:29:08,552     Creating /tmp/pip-build-env-57cp6b4p/overlay/bin
2024-02-26T12:29:08,555     changing mode of /tmp/pip-build-env-57cp6b4p/overlay/bin/versioneer to 755
2024-02-26T12:29:19,472     changing mode of /tmp/pip-build-env-57cp6b4p/overlay/bin/f2py to 755
2024-02-26T12:29:22,187     changing mode of /tmp/pip-build-env-57cp6b4p/overlay/bin/cygdb to 755
2024-02-26T12:29:22,189     changing mode of /tmp/pip-build-env-57cp6b4p/overlay/bin/cython to 755
2024-02-26T12:29:22,191     changing mode of /tmp/pip-build-env-57cp6b4p/overlay/bin/cythonize to 755
2024-02-26T12:29:22,216   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2024-02-26T12:29:22,217   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.4 which is incompatible.
2024-02-26T12:29:22,217   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-02-26T12:29:22,399   WARNING: There was an error checking the latest version of pip.
2024-02-26T12:29:22,844   Installing build dependencies: finished with status 'done'
2024-02-26T12:29:22,849   Getting requirements to build wheel: started
2024-02-26T12:29:22,850   Running command Getting requirements to build wheel
2024-02-26T12:30:39,925   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-02-26T12:30:58,674   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,674   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,674   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,674   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,674   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,674   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,675   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,675   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,675   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,675   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,675   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:30:58,675   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:30:58,676   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:30:58,676   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-02-26T12:30:58,676   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-02-26T12:30:58,676   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-02-26T12:30:58,676   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-02-26T12:30:58,676   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-02-26T12:30:58,676   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-02-26T12:30:58,676   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-02-26T12:30:58,677   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-02-26T12:30:58,677   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-02-26T12:30:58,677   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-02-26T12:30:58,677   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-02-26T12:30:58,677   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-02-26T12:30:58,677   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-02-26T12:30:58,677   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-02-26T12:30:58,678   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-02-26T12:30:58,678   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-02-26T12:30:58,678   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-02-26T12:30:58,964   running egg_info
2024-02-26T12:30:58,971   writing moleculekit.egg-info/PKG-INFO
2024-02-26T12:30:58,974   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T12:30:58,977   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T12:30:58,978   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-26T12:30:59,011   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,012   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,012   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,012   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,012   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,012   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,012   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,013   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,014   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,015   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,016   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,017   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,017   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,017   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,017   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,017   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:30:59,017   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-02-26T12:31:00,430   Getting requirements to build wheel: finished with status 'done'
2024-02-26T12:31:00,446   Installing backend dependencies: started
2024-02-26T12:31:00,447   Running command pip subprocess to install backend dependencies
2024-02-26T12:31:01,753   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-02-26T12:31:02,390   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-02-26T12:31:06,988   Collecting wheel
2024-02-26T12:31:09,918     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
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2024-02-26T12:31:12,718     Creating /tmp/pip-build-env-57cp6b4p/normal/bin
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2024-02-26T12:31:12,732   Successfully installed wheel-0.42.0
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2024-02-26T12:31:13,141   Installing backend dependencies: finished with status 'done'
2024-02-26T12:31:13,143   Created temporary directory: /tmp/pip-modern-metadata-u099ynp1
2024-02-26T12:31:13,146   Preparing metadata (pyproject.toml): started
2024-02-26T12:31:13,147   Running command Preparing metadata (pyproject.toml)
2024-02-26T12:31:15,604   running dist_info
2024-02-26T12:31:15,605   creating /tmp/pip-modern-metadata-u099ynp1/moleculekit.egg-info
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2024-02-26T12:31:15,665   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,666   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,666   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,666   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,666   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,667   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,667   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,667   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,667   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,667   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,668   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,668   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,668   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,668   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,669   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:15,676   reading manifest file '/tmp/pip-modern-metadata-u099ynp1/moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:31:15,678   reading manifest template 'MANIFEST.in'
2024-02-26T12:31:15,947   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T12:31:15,948   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T12:31:15,949   no previously-included directories found matching 'package'
2024-02-26T12:31:15,949   adding license file 'LICENSE'
2024-02-26T12:31:15,962   writing manifest file '/tmp/pip-modern-metadata-u099ynp1/moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:31:15,971   creating '/tmp/pip-modern-metadata-u099ynp1/moleculekit-1.8.24.dist-info'
2024-02-26T12:31:16,168   Preparing metadata (pyproject.toml): finished with status 'done'
2024-02-26T12:31:16,174   Source in /tmp/pip-wheel-eax7o8t2/moleculekit_cd8c24df3a8f44eca5a8361b8fac1eac has version 1.8.24, which satisfies requirement moleculekit==1.8.24 from https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz
2024-02-26T12:31:16,175   Removed moleculekit==1.8.24 from https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz from build tracker '/tmp/pip-build-tracker-3t_6lw73'
2024-02-26T12:31:16,181 Created temporary directory: /tmp/pip-unpack-sq9orj1g
2024-02-26T12:31:16,182 Created temporary directory: /tmp/pip-unpack-200_675b
2024-02-26T12:31:16,190 Building wheels for collected packages: moleculekit
2024-02-26T12:31:16,195   Created temporary directory: /tmp/pip-wheel-sk9ykr45
2024-02-26T12:31:16,195   Destination directory: /tmp/pip-wheel-sk9ykr45
2024-02-26T12:31:16,197   Building wheel for moleculekit (pyproject.toml): started
2024-02-26T12:31:16,198   Running command Building wheel for moleculekit (pyproject.toml)
2024-02-26T12:31:18,527   running bdist_wheel
2024-02-26T12:31:18,547   running build
2024-02-26T12:31:18,547   running build_py
2024-02-26T12:31:18,556   creating build
2024-02-26T12:31:18,556   creating build/lib.linux-armv7l-cpython-39
2024-02-26T12:31:18,557   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,559   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,561   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,565   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,569   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,572   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,577   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,617   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,621   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,626   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,628   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,630   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,631   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,634   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,635   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,638   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,640   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,642   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,644   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,646   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,648   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,650   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:18,653   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,654   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,656   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,658   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,661   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,663   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,665   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,667   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,670   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,672   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,673   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,676   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,678   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,680   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,683   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-02-26T12:31:18,685   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:31:18,686   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:31:18,688   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:31:18,691   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:31:18,692   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:31:18,695   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:31:18,697   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:31:18,698   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-02-26T12:31:18,701   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:31:18,702   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:31:18,707   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:31:18,708   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-02-26T12:31:18,712   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:31:18,713   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:31:18,715   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:31:18,716   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:31:18,719   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-02-26T12:31:18,720   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-02-26T12:31:18,722   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,723   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,726   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,730   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,732   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,734   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,736   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-02-26T12:31:18,739   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,740   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,743   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,746   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,748   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,750   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,753   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,756   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,758   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,761   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,763   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,765   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,766   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,769   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,770   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,773   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-02-26T12:31:18,776   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-26T12:31:18,777   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-26T12:31:18,779   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-02-26T12:31:18,781   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:31:18,782   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:31:18,784   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:31:18,787   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:31:18,788   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-02-26T12:31:18,791   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:31:18,792   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:31:18,794   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:31:18,797   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:31:18,799   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-02-26T12:31:18,802   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-26T12:31:18,803   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-26T12:31:18,805   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-02-26T12:31:18,807   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:31:18,808   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:31:18,810   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:31:18,812   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:31:18,814   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-02-26T12:31:18,816   running egg_info
2024-02-26T12:31:18,821   writing moleculekit.egg-info/PKG-INFO
2024-02-26T12:31:18,824   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-02-26T12:31:18,826   writing requirements to moleculekit.egg-info/requires.txt
2024-02-26T12:31:18,827   writing top-level names to moleculekit.egg-info/top_level.txt
2024-02-26T12:31:18,846   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,847   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,848   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,849   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,850   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,851   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,852   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,853   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,854   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,854   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,854   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,854   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,854   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,854   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,856   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,856   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,856   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,856   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,856   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,857   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,857   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,857   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,857   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,858   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,858   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,858   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,859   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,859   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,859   dependency /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-02-26T12:31:18,865   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:31:18,875   reading manifest template 'MANIFEST.in'
2024-02-26T12:31:19,112   no previously-included directories found matching 'moleculekit/test-data'
2024-02-26T12:31:19,114   no previously-included directories found matching 'moleculekit/tests'
2024-02-26T12:31:19,115   no previously-included directories found matching 'package'
2024-02-26T12:31:19,115   adding license file 'LICENSE'
2024-02-26T12:31:19,134   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-02-26T12:31:19,144   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-02-26T12:31:19,145   !!

2024-02-26T12:31:19,145           ********************************************************************************
2024-02-26T12:31:19,145           ############################
2024-02-26T12:31:19,145           # Package would be ignored #
2024-02-26T12:31:19,145           ############################
2024-02-26T12:31:19,145           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-02-26T12:31:19,145           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,146           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,146           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-02-26T12:31:19,146           to the `packages` configuration field.

2024-02-26T12:31:19,146           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,146           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,146           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,147           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,147           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,147           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-02-26T12:31:19,147           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-02-26T12:31:19,147           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,147           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,148           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,148           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,148           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,148           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,148                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,149                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,149                 directory, all directories are treated like packages.
2024-02-26T12:31:19,149           ********************************************************************************

2024-02-26T12:31:19,149   !!
2024-02-26T12:31:19,149     check.warn(importable)
2024-02-26T12:31:19,149   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-02-26T12:31:19,150   !!

2024-02-26T12:31:19,150           ********************************************************************************
2024-02-26T12:31:19,150           ############################
2024-02-26T12:31:19,150           # Package would be ignored #
2024-02-26T12:31:19,150           ############################
2024-02-26T12:31:19,150           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-02-26T12:31:19,150           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,151           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,151           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-02-26T12:31:19,151           to the `packages` configuration field.

2024-02-26T12:31:19,151           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,151           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,151           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,152           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,152           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,152           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-02-26T12:31:19,152           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-02-26T12:31:19,152           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,152           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,152           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,153           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,153           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,153           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,153                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,153                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,154                 directory, all directories are treated like packages.
2024-02-26T12:31:19,154           ********************************************************************************

2024-02-26T12:31:19,154   !!
2024-02-26T12:31:19,154     check.warn(importable)
2024-02-26T12:31:19,154   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-02-26T12:31:19,154   !!

2024-02-26T12:31:19,155           ********************************************************************************
2024-02-26T12:31:19,155           ############################
2024-02-26T12:31:19,155           # Package would be ignored #
2024-02-26T12:31:19,155           ############################
2024-02-26T12:31:19,155           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-02-26T12:31:19,156           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,156           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,156           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-02-26T12:31:19,156           to the `packages` configuration field.

2024-02-26T12:31:19,156           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,156           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,156           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,157           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,157           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,157           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-02-26T12:31:19,157           already explicitly excluding 'moleculekit.cython_utils' via
2024-02-26T12:31:19,157           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,157           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,158           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,158           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,158           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,158           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,158                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,158                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,159                 directory, all directories are treated like packages.
2024-02-26T12:31:19,159           ********************************************************************************

2024-02-26T12:31:19,159   !!
2024-02-26T12:31:19,159     check.warn(importable)
2024-02-26T12:31:19,159   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-02-26T12:31:19,159   !!

2024-02-26T12:31:19,159           ********************************************************************************
2024-02-26T12:31:19,160           ############################
2024-02-26T12:31:19,160           # Package would be ignored #
2024-02-26T12:31:19,160           ############################
2024-02-26T12:31:19,160           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-02-26T12:31:19,160           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,160           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,160           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-02-26T12:31:19,160           to the `packages` configuration field.

2024-02-26T12:31:19,161           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,161           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,161           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,161           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,161           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,161           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-02-26T12:31:19,162           already explicitly excluding 'moleculekit.distance_utils' via
2024-02-26T12:31:19,162           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,162           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,162           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,162           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,162           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,163           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,163                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,163                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,163                 directory, all directories are treated like packages.
2024-02-26T12:31:19,163           ********************************************************************************

2024-02-26T12:31:19,163   !!
2024-02-26T12:31:19,163     check.warn(importable)
2024-02-26T12:31:19,164   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-02-26T12:31:19,164   !!

2024-02-26T12:31:19,164           ********************************************************************************
2024-02-26T12:31:19,164           ############################
2024-02-26T12:31:19,164           # Package would be ignored #
2024-02-26T12:31:19,164           ############################
2024-02-26T12:31:19,164           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-02-26T12:31:19,164           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,165           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,165           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-02-26T12:31:19,165           to the `packages` configuration field.

2024-02-26T12:31:19,165           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,165           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,165           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,165           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,166           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,166           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-02-26T12:31:19,166           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-02-26T12:31:19,166           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,166           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,166           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,166           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,167           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,167           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,167                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,167                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,167                 directory, all directories are treated like packages.
2024-02-26T12:31:19,168           ********************************************************************************

2024-02-26T12:31:19,168   !!
2024-02-26T12:31:19,168     check.warn(importable)
2024-02-26T12:31:19,168   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-02-26T12:31:19,168   !!

2024-02-26T12:31:19,168           ********************************************************************************
2024-02-26T12:31:19,168           ############################
2024-02-26T12:31:19,169           # Package would be ignored #
2024-02-26T12:31:19,169           ############################
2024-02-26T12:31:19,169           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-02-26T12:31:19,169           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,169           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,169           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-02-26T12:31:19,169           to the `packages` configuration field.

2024-02-26T12:31:19,170           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,170           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,170           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,170           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,170           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,170           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-02-26T12:31:19,171           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-02-26T12:31:19,171           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,171           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,171           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,171           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,171           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,172           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,172                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,172                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,172                 directory, all directories are treated like packages.
2024-02-26T12:31:19,172           ********************************************************************************

2024-02-26T12:31:19,172   !!
2024-02-26T12:31:19,172     check.warn(importable)
2024-02-26T12:31:19,173   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-02-26T12:31:19,173   !!

2024-02-26T12:31:19,173           ********************************************************************************
2024-02-26T12:31:19,173           ############################
2024-02-26T12:31:19,173           # Package would be ignored #
2024-02-26T12:31:19,173           ############################
2024-02-26T12:31:19,173           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-02-26T12:31:19,174           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,174           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,174           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-02-26T12:31:19,174           to the `packages` configuration field.

2024-02-26T12:31:19,174           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,174           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,174           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,175           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,175           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,175           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-02-26T12:31:19,175           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-02-26T12:31:19,175           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,176           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,176           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,176           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,176           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,176           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,177                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,177                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,177                 directory, all directories are treated like packages.
2024-02-26T12:31:19,177           ********************************************************************************

2024-02-26T12:31:19,177   !!
2024-02-26T12:31:19,177     check.warn(importable)
2024-02-26T12:31:19,177   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-02-26T12:31:19,177   !!

2024-02-26T12:31:19,178           ********************************************************************************
2024-02-26T12:31:19,178           ############################
2024-02-26T12:31:19,178           # Package would be ignored #
2024-02-26T12:31:19,178           ############################
2024-02-26T12:31:19,178           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-02-26T12:31:19,178           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,178           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,179           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-02-26T12:31:19,179           to the `packages` configuration field.

2024-02-26T12:31:19,179           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,179           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,179           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,179           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,180           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,180           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-02-26T12:31:19,180           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-02-26T12:31:19,180           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,180           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,180           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,180           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,181           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,181           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,181                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,181                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,181                 directory, all directories are treated like packages.
2024-02-26T12:31:19,181           ********************************************************************************

2024-02-26T12:31:19,182   !!
2024-02-26T12:31:19,182     check.warn(importable)
2024-02-26T12:31:19,182   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-02-26T12:31:19,182   !!

2024-02-26T12:31:19,182           ********************************************************************************
2024-02-26T12:31:19,182           ############################
2024-02-26T12:31:19,182           # Package would be ignored #
2024-02-26T12:31:19,183           ############################
2024-02-26T12:31:19,183           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-02-26T12:31:19,183           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,183           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,183           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-02-26T12:31:19,183           to the `packages` configuration field.

2024-02-26T12:31:19,183           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,184           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,184           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,184           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,184           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,184           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-02-26T12:31:19,184           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-02-26T12:31:19,185           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,185           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,185           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,185           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,186           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,186           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,186                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,186                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,187                 directory, all directories are treated like packages.
2024-02-26T12:31:19,187           ********************************************************************************

2024-02-26T12:31:19,187   !!
2024-02-26T12:31:19,187     check.warn(importable)
2024-02-26T12:31:19,187   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-02-26T12:31:19,187   !!

2024-02-26T12:31:19,188           ********************************************************************************
2024-02-26T12:31:19,188           ############################
2024-02-26T12:31:19,188           # Package would be ignored #
2024-02-26T12:31:19,188           ############################
2024-02-26T12:31:19,188           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-02-26T12:31:19,188           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,188           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,189           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-02-26T12:31:19,189           to the `packages` configuration field.

2024-02-26T12:31:19,189           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,189           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,189           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,189           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,190           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,190           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-02-26T12:31:19,190           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-02-26T12:31:19,190           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,190           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,190           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,191           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,191           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,191           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,191                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,192                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,192                 directory, all directories are treated like packages.
2024-02-26T12:31:19,192           ********************************************************************************

2024-02-26T12:31:19,192   !!
2024-02-26T12:31:19,192     check.warn(importable)
2024-02-26T12:31:19,192   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-02-26T12:31:19,192   !!

2024-02-26T12:31:19,193           ********************************************************************************
2024-02-26T12:31:19,193           ############################
2024-02-26T12:31:19,193           # Package would be ignored #
2024-02-26T12:31:19,193           ############################
2024-02-26T12:31:19,193           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-02-26T12:31:19,193           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,194           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,194           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-02-26T12:31:19,194           to the `packages` configuration field.

2024-02-26T12:31:19,194           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,194           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,195           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,195           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,195           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,195           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-02-26T12:31:19,195           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-02-26T12:31:19,196           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,196           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,196           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,196           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,196           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,197           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,197                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,197                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,197                 directory, all directories are treated like packages.
2024-02-26T12:31:19,197           ********************************************************************************

2024-02-26T12:31:19,197   !!
2024-02-26T12:31:19,197     check.warn(importable)
2024-02-26T12:31:19,198   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-02-26T12:31:19,198   !!

2024-02-26T12:31:19,198           ********************************************************************************
2024-02-26T12:31:19,198           ############################
2024-02-26T12:31:19,198           # Package would be ignored #
2024-02-26T12:31:19,198           ############################
2024-02-26T12:31:19,198           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-02-26T12:31:19,198           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,199           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,199           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-02-26T12:31:19,199           to the `packages` configuration field.

2024-02-26T12:31:19,199           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,199           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,199           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,200           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,200           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,200           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-02-26T12:31:19,200           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-02-26T12:31:19,200           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,200           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,200           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,201           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,201           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,201           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,201                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,202                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,202                 directory, all directories are treated like packages.
2024-02-26T12:31:19,202           ********************************************************************************

2024-02-26T12:31:19,202   !!
2024-02-26T12:31:19,202     check.warn(importable)
2024-02-26T12:31:19,202   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-02-26T12:31:19,202   !!

2024-02-26T12:31:19,203           ********************************************************************************
2024-02-26T12:31:19,203           ############################
2024-02-26T12:31:19,203           # Package would be ignored #
2024-02-26T12:31:19,203           ############################
2024-02-26T12:31:19,203           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-02-26T12:31:19,203           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,204           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,204           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-02-26T12:31:19,204           to the `packages` configuration field.

2024-02-26T12:31:19,204           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,204           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,204           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,205           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,205           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,205           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-02-26T12:31:19,205           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-02-26T12:31:19,205           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,206           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,206           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,206           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,206           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,206           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,207                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,207                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,207                 directory, all directories are treated like packages.
2024-02-26T12:31:19,207           ********************************************************************************

2024-02-26T12:31:19,207   !!
2024-02-26T12:31:19,207     check.warn(importable)
2024-02-26T12:31:19,207   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-02-26T12:31:19,208   !!

2024-02-26T12:31:19,208           ********************************************************************************
2024-02-26T12:31:19,208           ############################
2024-02-26T12:31:19,208           # Package would be ignored #
2024-02-26T12:31:19,208           ############################
2024-02-26T12:31:19,208           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-02-26T12:31:19,209           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,209           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,209           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-02-26T12:31:19,209           to the `packages` configuration field.

2024-02-26T12:31:19,209           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,209           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,210           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,210           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,210           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,210           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-02-26T12:31:19,210           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-02-26T12:31:19,211           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,211           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,211           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,211           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,211           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,212           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,212                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,212                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,212                 directory, all directories are treated like packages.
2024-02-26T12:31:19,212           ********************************************************************************

2024-02-26T12:31:19,213   !!
2024-02-26T12:31:19,213     check.warn(importable)
2024-02-26T12:31:19,213   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-02-26T12:31:19,213   !!

2024-02-26T12:31:19,213           ********************************************************************************
2024-02-26T12:31:19,213           ############################
2024-02-26T12:31:19,214           # Package would be ignored #
2024-02-26T12:31:19,214           ############################
2024-02-26T12:31:19,214           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-02-26T12:31:19,214           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,214           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,214           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-02-26T12:31:19,215           to the `packages` configuration field.

2024-02-26T12:31:19,215           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,215           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,215           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,215           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,216           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,216           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-02-26T12:31:19,216           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-02-26T12:31:19,216           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,216           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,216           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,217           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,217           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,217           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,217                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,217                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,218                 directory, all directories are treated like packages.
2024-02-26T12:31:19,218           ********************************************************************************

2024-02-26T12:31:19,218   !!
2024-02-26T12:31:19,218     check.warn(importable)
2024-02-26T12:31:19,218   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-02-26T12:31:19,218   !!

2024-02-26T12:31:19,218           ********************************************************************************
2024-02-26T12:31:19,219           ############################
2024-02-26T12:31:19,219           # Package would be ignored #
2024-02-26T12:31:19,219           ############################
2024-02-26T12:31:19,219           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-02-26T12:31:19,219           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,219           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,219           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-02-26T12:31:19,220           to the `packages` configuration field.

2024-02-26T12:31:19,220           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,220           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,220           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,220           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,220           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,221           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-02-26T12:31:19,221           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-02-26T12:31:19,221           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,221           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,221           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,221           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,222           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,222           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,223                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,225                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,226                 directory, all directories are treated like packages.
2024-02-26T12:31:19,226           ********************************************************************************

2024-02-26T12:31:19,226   !!
2024-02-26T12:31:19,226     check.warn(importable)
2024-02-26T12:31:19,227   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-02-26T12:31:19,227   !!

2024-02-26T12:31:19,227           ********************************************************************************
2024-02-26T12:31:19,227           ############################
2024-02-26T12:31:19,228           # Package would be ignored #
2024-02-26T12:31:19,228           ############################
2024-02-26T12:31:19,228           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-02-26T12:31:19,228           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,228           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,229           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-02-26T12:31:19,229           to the `packages` configuration field.

2024-02-26T12:31:19,229           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,229           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,229           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,230           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,230           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,230           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-02-26T12:31:19,230           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-02-26T12:31:19,231           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,231           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,231           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,231           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,231           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,232           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,232                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,232                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,232                 directory, all directories are treated like packages.
2024-02-26T12:31:19,232           ********************************************************************************

2024-02-26T12:31:19,232   !!
2024-02-26T12:31:19,232     check.warn(importable)
2024-02-26T12:31:19,233   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-02-26T12:31:19,233   !!

2024-02-26T12:31:19,233           ********************************************************************************
2024-02-26T12:31:19,233           ############################
2024-02-26T12:31:19,233           # Package would be ignored #
2024-02-26T12:31:19,233           ############################
2024-02-26T12:31:19,233           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-02-26T12:31:19,234           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,234           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,234           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-02-26T12:31:19,234           to the `packages` configuration field.

2024-02-26T12:31:19,234           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,234           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,235           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,235           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,235           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,235           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-02-26T12:31:19,236           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-02-26T12:31:19,236           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,236           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,236           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,236           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,236           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,237           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,237                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,237                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,237                 directory, all directories are treated like packages.
2024-02-26T12:31:19,237           ********************************************************************************

2024-02-26T12:31:19,238   !!
2024-02-26T12:31:19,238     check.warn(importable)
2024-02-26T12:31:19,238   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-02-26T12:31:19,238   !!

2024-02-26T12:31:19,238           ********************************************************************************
2024-02-26T12:31:19,238           ############################
2024-02-26T12:31:19,238           # Package would be ignored #
2024-02-26T12:31:19,239           ############################
2024-02-26T12:31:19,239           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-02-26T12:31:19,239           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,239           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,239           package, please make sure that 'moleculekit.share' is explicitly added
2024-02-26T12:31:19,239           to the `packages` configuration field.

2024-02-26T12:31:19,240           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,240           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,240           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,240           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,240           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,241           If you don't want 'moleculekit.share' to be distributed and are
2024-02-26T12:31:19,241           already explicitly excluding 'moleculekit.share' via
2024-02-26T12:31:19,241           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,241           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,241           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,241           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,242           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,242           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,242                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,242                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,242                 directory, all directories are treated like packages.
2024-02-26T12:31:19,242           ********************************************************************************

2024-02-26T12:31:19,243   !!
2024-02-26T12:31:19,243     check.warn(importable)
2024-02-26T12:31:19,243   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-02-26T12:31:19,243   !!

2024-02-26T12:31:19,243           ********************************************************************************
2024-02-26T12:31:19,243           ############################
2024-02-26T12:31:19,244           # Package would be ignored #
2024-02-26T12:31:19,244           ############################
2024-02-26T12:31:19,244           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-02-26T12:31:19,244           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,244           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,244           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-02-26T12:31:19,244           to the `packages` configuration field.

2024-02-26T12:31:19,245           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,245           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,245           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,245           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,245           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,246           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-02-26T12:31:19,246           already explicitly excluding 'moleculekit.share.atomselect' via
2024-02-26T12:31:19,246           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,246           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,246           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,246           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,247           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,247           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,247                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,247                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,247                 directory, all directories are treated like packages.
2024-02-26T12:31:19,248           ********************************************************************************

2024-02-26T12:31:19,248   !!
2024-02-26T12:31:19,248     check.warn(importable)
2024-02-26T12:31:19,248   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-02-26T12:31:19,248   !!

2024-02-26T12:31:19,248           ********************************************************************************
2024-02-26T12:31:19,249           ############################
2024-02-26T12:31:19,249           # Package would be ignored #
2024-02-26T12:31:19,249           ############################
2024-02-26T12:31:19,249           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-02-26T12:31:19,249           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,249           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,250           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-02-26T12:31:19,250           to the `packages` configuration field.

2024-02-26T12:31:19,250           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,250           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,250           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,250           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,251           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,251           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-02-26T12:31:19,251           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-02-26T12:31:19,251           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,251           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,251           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,252           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,252           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,252           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,252                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,252                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,253                 directory, all directories are treated like packages.
2024-02-26T12:31:19,253           ********************************************************************************

2024-02-26T12:31:19,253   !!
2024-02-26T12:31:19,253     check.warn(importable)
2024-02-26T12:31:19,253   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-02-26T12:31:19,253   !!

2024-02-26T12:31:19,254           ********************************************************************************
2024-02-26T12:31:19,254           ############################
2024-02-26T12:31:19,254           # Package would be ignored #
2024-02-26T12:31:19,254           ############################
2024-02-26T12:31:19,254           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-02-26T12:31:19,254           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,254           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,255           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-02-26T12:31:19,255           to the `packages` configuration field.

2024-02-26T12:31:19,255           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,255           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,255           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,255           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,256           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,256           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-02-26T12:31:19,256           already explicitly excluding 'moleculekit.tmalign' via
2024-02-26T12:31:19,256           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,256           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,256           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,257           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,257           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,257           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,257                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,257                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,257                 directory, all directories are treated like packages.
2024-02-26T12:31:19,258           ********************************************************************************

2024-02-26T12:31:19,258   !!
2024-02-26T12:31:19,258     check.warn(importable)
2024-02-26T12:31:19,258   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-02-26T12:31:19,258   !!

2024-02-26T12:31:19,258           ********************************************************************************
2024-02-26T12:31:19,258           ############################
2024-02-26T12:31:19,259           # Package would be ignored #
2024-02-26T12:31:19,259           ############################
2024-02-26T12:31:19,259           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-02-26T12:31:19,259           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,259           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,259           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-02-26T12:31:19,259           to the `packages` configuration field.

2024-02-26T12:31:19,260           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,260           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,260           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,260           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,260           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,260           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-02-26T12:31:19,261           already explicitly excluding 'moleculekit.tmalign.include' via
2024-02-26T12:31:19,261           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,261           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,261           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,261           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,261           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,262           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,262                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,262                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,262                 directory, all directories are treated like packages.
2024-02-26T12:31:19,262           ********************************************************************************

2024-02-26T12:31:19,262   !!
2024-02-26T12:31:19,262     check.warn(importable)
2024-02-26T12:31:19,263   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-02-26T12:31:19,263   !!

2024-02-26T12:31:19,263           ********************************************************************************
2024-02-26T12:31:19,263           ############################
2024-02-26T12:31:19,263           # Package would be ignored #
2024-02-26T12:31:19,263           ############################
2024-02-26T12:31:19,263           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-02-26T12:31:19,263           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,264           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,264           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-02-26T12:31:19,264           to the `packages` configuration field.

2024-02-26T12:31:19,264           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,264           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,264           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,265           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,265           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,265           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-02-26T12:31:19,265           already explicitly excluding 'moleculekit.tmalign.src' via
2024-02-26T12:31:19,265           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,266           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,266           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,266           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,266           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,267           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,267                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,267                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,267                 directory, all directories are treated like packages.
2024-02-26T12:31:19,267           ********************************************************************************

2024-02-26T12:31:19,267   !!
2024-02-26T12:31:19,268     check.warn(importable)
2024-02-26T12:31:19,268   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-02-26T12:31:19,268   !!

2024-02-26T12:31:19,268           ********************************************************************************
2024-02-26T12:31:19,268           ############################
2024-02-26T12:31:19,268           # Package would be ignored #
2024-02-26T12:31:19,268           ############################
2024-02-26T12:31:19,269           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-02-26T12:31:19,269           but it is absent from setuptools' `packages` configuration.

2024-02-26T12:31:19,269           This leads to an ambiguous overall configuration. If you want to distribute this
2024-02-26T12:31:19,269           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-02-26T12:31:19,269           to the `packages` configuration field.

2024-02-26T12:31:19,269           Alternatively, you can also rely on setuptools' discovery methods
2024-02-26T12:31:19,270           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-02-26T12:31:19,270           instead of `find_packages(...)`/`find:`).

2024-02-26T12:31:19,270           You can read more about "package discovery" on setuptools documentation page:

2024-02-26T12:31:19,270           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-02-26T12:31:19,270           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-02-26T12:31:19,270           already explicitly excluding 'moleculekit.wrapping' via
2024-02-26T12:31:19,271           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-02-26T12:31:19,271           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-02-26T12:31:19,271           combination with a more fine grained `package-data` configuration.

2024-02-26T12:31:19,271           You can read more about "package data files" on setuptools documentation page:

2024-02-26T12:31:19,271           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-02-26T12:31:19,272           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-02-26T12:31:19,272                 even if it does not contain any `.py` files.
2024-02-26T12:31:19,272                 On the other hand, currently there is no concept of package data
2024-02-26T12:31:19,272                 directory, all directories are treated like packages.
2024-02-26T12:31:19,272           ********************************************************************************

2024-02-26T12:31:19,272   !!
2024-02-26T12:31:19,272     check.warn(importable)
2024-02-26T12:31:19,272   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:19,273   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:19,273   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:31:19,273   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:31:19,273   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:31:19,273   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:31:19,273   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:31:19,297   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:31:19,300   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:31:19,301   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:31:19,327   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:31:19,329   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:31:19,330   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:31:19,364   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:31:19,368   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:31:19,369   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:31:19,415   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:31:19,417   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:31:19,419   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:31:19,426   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:31:19,429   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-02-26T12:31:19,743   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-02-26T12:31:19,744   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-02-26T12:31:19,746   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-02-26T12:31:19,747   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,748   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,749   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,751   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,753   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,755   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,757   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,759   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,762   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,764   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,766   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,768   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,770   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,772   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,775   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,777   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,779   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,782   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,784   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,786   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,789   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,791   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,794   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,796   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,798   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,800   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,802   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,805   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,807   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,810   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,812   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,814   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,817   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,819   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,821   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,824   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,826   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,828   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,831   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,833   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:19,835   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,056   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,058   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,060   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,062   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,065   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,067   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,069   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,071   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,074   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,076   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,078   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,081   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,083   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,085   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,088   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,090   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,092   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,094   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,097   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,099   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,101   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,103   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,106   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,108   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,110   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,113   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,115   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,117   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,120   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,122   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,124   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,127   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,129   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,131   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,134   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,136   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,138   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,140   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,143   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,145   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,147   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,149   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,152   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,154   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,157   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,159   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,161   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,163   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,166   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,168   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,170   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,172   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,175   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,178   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,181   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,184   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,187   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,190   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,193   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,196   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,199   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,202   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,205   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,208   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,211   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,215   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,218   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,221   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,224   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,227   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,230   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,233   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,236   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,239   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,242   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,246   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,249   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,252   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,256   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,260   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,263   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,266   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,269   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,272   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,274   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,277   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,279   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,281   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,284   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,286   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,288   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,290   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,292   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,295   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,297   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,299   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,301   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,303   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,306   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,308   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,310   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,312   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,315   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,317   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,319   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,321   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,322   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,324   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,326   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,328   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,330   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,332   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,334   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,335   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,337   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,340   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,342   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,343   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,345   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,347   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,349   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,351   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,353   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,355   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,357   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,360   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,362   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,365   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,368   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,371   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,373   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,375   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,378   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,380   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,382   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-02-26T12:31:20,385   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:31:20,386   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:31:20,412   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:31:20,415   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:31:20,417   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-02-26T12:31:20,418   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-02-26T12:31:20,420   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-26T12:31:20,422   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-26T12:31:20,428   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:31:20,429   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:31:20,462   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:31:20,464   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:31:20,465   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:31:20,498   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:31:20,500   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:31:20,501   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:31:20,533   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:31:20,536   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:31:20,537   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:31:20,576   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:31:20,578   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:31:20,580   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:31:20,614   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:31:20,617   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:31:20,618   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:31:20,645   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:31:20,648   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:31:20,649   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:31:20,650   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:31:20,652   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:31:20,654   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-02-26T12:31:20,657   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-26T12:31:20,658   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-26T12:31:20,660   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:31:20,661   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:31:20,682   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:31:20,684   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:31:20,686   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:31:20,687   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:31:20,689   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:31:20,691   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:31:20,694   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:31:20,696   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-02-26T12:31:20,699   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-26T12:31:20,700   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-26T12:31:20,703   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,704   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,734   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,737   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,739   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,740   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,769   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,771   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:31:20,772   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,773   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,775   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,778   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,781   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,783   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,784   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-02-26T12:31:20,786   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:31:20,787   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:31:20,789   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:31:20,793   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:31:20,795   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:31:20,797   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:31:20,810   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-02-26T12:31:20,810   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.24'
2024-02-26T12:31:20,810   running build_ext
2024-02-26T12:31:20,821   building 'moleculekit.interactions.hbonds' extension
2024-02-26T12:31:20,822   creating build/temp.linux-armv7l-cpython-39
2024-02-26T12:31:20,822   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-02-26T12:31:20,823   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-02-26T12:31:20,824   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-02-26T12:31:20,825   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-02-26T12:31:21,120   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:31:21,120                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:31:21,120                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:31:21,120                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-02-26T12:31:21,120   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:31:21,120      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:31:21,120         |  ^~~~~~~
2024-02-26T12:31:44,217   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-26T12:31:44,217   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:31:44,218   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-02-26T12:31:44,218         |                                                    ^~~~~~~~~~~~~~~
2024-02-26T12:31:44,218   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-02-26T12:31:44,218   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-02-26T12:31:44,218         |                                                         ^~~~~~~~~~~~~~~
2024-02-26T12:31:47,462   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:31:47,785   building 'moleculekit.interactions.pipi' extension
2024-02-26T12:31:47,786   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-02-26T12:31:47,787   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-02-26T12:31:48,019   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:31:48,020                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:31:48,020                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:31:48,020                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-02-26T12:31:48,020   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:31:48,020      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:31:48,020         |  ^~~~~~~
2024-02-26T12:32:16,389   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:32:16,730   building 'moleculekit.interactions.cationpi' extension
2024-02-26T12:32:16,731   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-02-26T12:32:16,731   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-02-26T12:32:16,979   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:32:16,980                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:32:16,980                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:32:16,980                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-02-26T12:32:16,980   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:32:16,980      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:32:16,980         |  ^~~~~~~
2024-02-26T12:32:45,029   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:32:45,351   building 'moleculekit.interactions.sigmahole' extension
2024-02-26T12:32:45,352   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-02-26T12:32:45,353   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-02-26T12:32:45,592   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:32:45,592                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:32:45,592                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:32:45,592                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-02-26T12:32:45,593   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:32:45,593      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:32:45,593         |  ^~~~~~~
2024-02-26T12:33:13,143   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:33:13,475   building 'moleculekit.wrapping' extension
2024-02-26T12:33:13,476   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-02-26T12:33:13,477   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-02-26T12:33:13,708   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:33:13,708                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:33:13,708                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:33:13,708                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-02-26T12:33:13,708   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:33:13,708      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:33:13,709         |  ^~~~~~~
2024-02-26T12:33:39,709   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:33:39,931   building 'moleculekit.bondguesser_utils' extension
2024-02-26T12:33:39,932   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-02-26T12:33:39,933   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-02-26T12:33:40,163   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:33:40,163                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:33:40,163                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:33:40,164                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-02-26T12:33:40,164   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:33:40,164      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:33:40,164         |  ^~~~~~~
2024-02-26T12:33:41,717   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-02-26T12:33:41,718   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T12:33:41,718   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-02-26T12:33:41,718         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T12:33:41,718   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T12:33:41,718   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-02-26T12:33:41,718         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T12:33:41,719   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-02-26T12:33:41,719   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-02-26T12:33:41,719         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-02-26T12:33:41,719   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,719   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:33:41,719         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,720   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,720   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:33:41,720         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,720   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,720   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,720         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,720   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,721   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:33:41,721         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,721   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,721   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:33:41,721         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,721   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,722   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:33:41,722         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,722   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,722   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,722         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,722   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,722   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:33:41,723         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,723   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,723   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,723         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,723   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,723   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:33:41,723         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,724   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,724   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,724         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,724   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,724   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,724         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,724   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,725   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:33:41,725         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,725   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,725   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:33:41,725         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,726   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,726         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,726   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-02-26T12:33:41,726         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,727   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,727         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,727   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,727   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-02-26T12:33:41,727         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,727   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,727   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,728         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,728   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-02-26T12:33:41,728   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-02-26T12:33:41,728         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,747   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-02-26T12:33:41,747   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:33:41,747   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-02-26T12:33:41,747         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-02-26T12:33:41,747   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:33:41,747   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-02-26T12:33:41,748         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T12:34:05,052   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:34:05,372   building 'moleculekit.atomselect_utils' extension
2024-02-26T12:34:05,372   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-02-26T12:34:05,373   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-02-26T12:34:05,609   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:34:05,610                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:34:05,610                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:34:05,610                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-02-26T12:34:05,610   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:34:05,610      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:34:05,610         |  ^~~~~~~
2024-02-26T12:34:07,355   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-02-26T12:34:07,356   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:34:07,356   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-02-26T12:34:07,356         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-02-26T12:34:07,361   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T12:34:07,361   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:34:07,361   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T12:34:07,361         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:34:07,366   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-02-26T12:34:07,367   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-02-26T12:34:07,367   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-02-26T12:34:07,367         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:34:37,750   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:34:38,101   building 'moleculekit.distance_utils' extension
2024-02-26T12:34:38,101   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-02-26T12:34:38,102   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-02-26T12:34:38,334   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:34:38,335                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:34:38,335                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:34:38,335                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-02-26T12:34:38,335   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:34:38,335      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:34:38,335         |  ^~~~~~~
2024-02-26T12:35:13,762   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:35:14,105   building 'moleculekit.occupancy_utils' extension
2024-02-26T12:35:14,106   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-02-26T12:35:14,107   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-02-26T12:35:14,376   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:35:14,376                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:35:14,376                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:35:14,376                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-02-26T12:35:14,376   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:35:14,377      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:35:14,377         |  ^~~~~~~
2024-02-26T12:35:37,575   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:35:37,788   building 'moleculekit.cython_utils' extension
2024-02-26T12:35:37,788   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-02-26T12:35:37,789   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-02-26T12:35:38,076   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:35:38,076                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:35:38,076                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:35:38,077                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-02-26T12:35:38,077   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:35:38,077      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:35:38,077         |  ^~~~~~~
2024-02-26T12:36:04,803   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:36:05,158   building 'moleculekit.xtc' extension
2024-02-26T12:36:05,159   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-02-26T12:36:05,160   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-02-26T12:36:05,161   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-02-26T12:36:05,162   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T12:36:05,424   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,425      66 |  "OK",
2024-02-26T12:36:05,425         |  ^~~~
2024-02-26T12:36:05,425   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,425      67 |  "Header",
2024-02-26T12:36:05,426         |  ^~~~~~~~
2024-02-26T12:36:05,426   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,426      68 |  "String",
2024-02-26T12:36:05,426         |  ^~~~~~~~
2024-02-26T12:36:05,426   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,426      69 |  "Double",
2024-02-26T12:36:05,426         |  ^~~~~~~~
2024-02-26T12:36:05,427   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,427      70 |  "Integer",
2024-02-26T12:36:05,427         |  ^~~~~~~~~
2024-02-26T12:36:05,427   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,427      71 |  "Float",
2024-02-26T12:36:05,427         |  ^~~~~~~
2024-02-26T12:36:05,427   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,428      72 |  "Unsigned integer",
2024-02-26T12:36:05,428         |  ^~~~~~~~~~~~~~~~~~
2024-02-26T12:36:05,428   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,428      73 |  "Compressed 3D coordinate",
2024-02-26T12:36:05,428         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:05,428   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,429      74 |  "Closing file",
2024-02-26T12:36:05,429         |  ^~~~~~~~~~~~~~
2024-02-26T12:36:05,429   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,429      75 |  "Magic number",
2024-02-26T12:36:05,429         |  ^~~~~~~~~~~~~~
2024-02-26T12:36:05,429   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,429      76 |  "Not enough memory",
2024-02-26T12:36:05,430         |  ^~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:05,430   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,430      77 |  "End of file",
2024-02-26T12:36:05,430         |  ^~~~~~~~~~~~~
2024-02-26T12:36:05,430   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:05,430      78 |  "File not found"
2024-02-26T12:36:05,430         |  ^~~~~~~~~~~~~~~~
2024-02-26T12:36:05,434   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T12:36:05,434   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,435     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T12:36:05,435         |            ~~~~~^~~~~~
2024-02-26T12:36:05,435   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T12:36:05,435   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,435     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T12:36:05,435         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:36:05,437   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T12:36:05,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,438     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T12:36:05,438         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:05,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,438     616 |   for (i = 0; i < num_of_bytes; i++)
2024-02-26T12:36:05,438         |               ~~^~~~~~~~~~~~~~
2024-02-26T12:36:05,439   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,439     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T12:36:05,439         |               ~~^~~~~~~~~~~~~~~~
2024-02-26T12:36:05,439   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T12:36:05,439   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,439     664 |   if (lastbits < num_of_bits)
2024-02-26T12:36:05,439         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T12:36:05,443   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T12:36:05,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,443     785 |  if(size3>xfp->buf1size)
2024-02-26T12:36:05,443         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:05,444   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,445     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:05,445         |                   ^
2024-02-26T12:36:05,447   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,447     932 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:05,448         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:05,448   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,448     935 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:05,448         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:05,448   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,448     938 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:05,448         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:05,449   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,449     945 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:05,449         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:05,449   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,449     948 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:05,449         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:05,449   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,450     951 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:05,450         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:05,450   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:05,450     756 |  int smallidx,  minidx, maxidx;
2024-02-26T12:36:05,450         |                 ^~~~~~
2024-02-26T12:36:05,450   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:05,450     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:36:05,451         |                         ^~~~~~
2024-02-26T12:36:05,451   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:36:05,451     763 |  int errval=1;
2024-02-26T12:36:05,451         |      ^~~~~~
2024-02-26T12:36:05,452   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T12:36:05,452   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,452    1011 |  if(size3>xfp->buf1size)
2024-02-26T12:36:05,452         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:05,454   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,454    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:36:05,454         |                     ~~~~~~~~^~~~~~~
2024-02-26T12:36:05,454   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,455    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:36:05,455         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:36:05,455   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,455    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:36:05,455         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:36:05,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,457    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T12:36:05,457         |                  ^
2024-02-26T12:36:05,457   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,457    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:05,457         |                   ^
2024-02-26T12:36:05,461   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,461    1275 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:36:05,461         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:05,462   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:05,462    1001 |  int errval;
2024-02-26T12:36:05,462         |      ^~~~~~
2024-02-26T12:36:05,464   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T12:36:05,464   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,465    1316 |  if(size3>xfp->buf1size)
2024-02-26T12:36:05,465         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:05,466   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,466    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:05,467         |                   ^
2024-02-26T12:36:05,469   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:05,469    1289 |  int smallidx,  maxidx, minidx;
2024-02-26T12:36:05,469         |                         ^~~~~~
2024-02-26T12:36:05,470   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:05,470    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:36:05,470         |                         ^~~~~~
2024-02-26T12:36:05,470   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:36:05,470    1297 |  int errval=1;
2024-02-26T12:36:05,470         |      ^~~~~~
2024-02-26T12:36:05,471   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T12:36:05,472   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,472    1513 |  if(size3>xfp->buf1size) {
2024-02-26T12:36:05,472         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:05,476   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,476    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T12:36:05,476         |                  ^
2024-02-26T12:36:05,476   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:05,476    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:05,477         |                   ^
2024-02-26T12:36:05,480   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:05,480    1743 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:36:05,480         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:05,481   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:05,481    1504 |  int errval=1;
2024-02-26T12:36:05,481         |      ^~~~~~
2024-02-26T12:36:07,734   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-02-26T12:36:08,999   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-02-26T12:36:09,653   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-02-26T12:36:09,653   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:09,653     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T12:36:09,653         |                  ~~~~~^~~~~~~~
2024-02-26T12:36:09,654   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T12:36:09,654     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-02-26T12:36:09,654         |      ^~~
2024-02-26T12:36:09,660   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-02-26T12:36:09,661   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-02-26T12:36:09,661     418 |  int nf3 = nframes * 3;
2024-02-26T12:36:09,661         |      ^~~
2024-02-26T12:36:09,663   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-02-26T12:36:09,663   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:09,663     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T12:36:09,663         |                   ~~~~~^~~~~~~~
2024-02-26T12:36:09,665   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:09,665     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-02-26T12:36:09,666         |                   ~~~~~^~~~~~~~
2024-02-26T12:36:09,666   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-02-26T12:36:09,666     491 |  int reading_index = 0;
2024-02-26T12:36:09,666         |      ^~~~~~~~~~~~~
2024-02-26T12:36:09,666   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-02-26T12:36:09,666     492 |  int writing_index = 0;
2024-02-26T12:36:09,666         |      ^~~~~~~~~~~~~
2024-02-26T12:36:10,447   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-02-26T12:36:10,733   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:36:10,734                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:36:10,734                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:36:10,734                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-02-26T12:36:10,734   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:36:10,734      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:36:10,734         |  ^~~~~~~
2024-02-26T12:36:30,985   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:36:31,305   building 'moleculekit.trr' extension
2024-02-26T12:36:31,307   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-02-26T12:36:31,424   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-02-26T12:36:31,658   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,658      66 |  "OK",
2024-02-26T12:36:31,658         |  ^~~~
2024-02-26T12:36:31,659   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,659      67 |  "Header",
2024-02-26T12:36:31,659         |  ^~~~~~~~
2024-02-26T12:36:31,659   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,659      68 |  "String",
2024-02-26T12:36:31,659         |  ^~~~~~~~
2024-02-26T12:36:31,660   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,660      69 |  "Double",
2024-02-26T12:36:31,660         |  ^~~~~~~~
2024-02-26T12:36:31,660   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,660      70 |  "Integer",
2024-02-26T12:36:31,660         |  ^~~~~~~~~
2024-02-26T12:36:31,661   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,661      71 |  "Float",
2024-02-26T12:36:31,661         |  ^~~~~~~
2024-02-26T12:36:31,661   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,661      72 |  "Unsigned integer",
2024-02-26T12:36:31,661         |  ^~~~~~~~~~~~~~~~~~
2024-02-26T12:36:31,661   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,662      73 |  "Compressed 3D coordinate",
2024-02-26T12:36:31,662         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:31,662   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,662      74 |  "Closing file",
2024-02-26T12:36:31,662         |  ^~~~~~~~~~~~~~
2024-02-26T12:36:31,662   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,662      75 |  "Magic number",
2024-02-26T12:36:31,663         |  ^~~~~~~~~~~~~~
2024-02-26T12:36:31,663   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,663      76 |  "Not enough memory",
2024-02-26T12:36:31,663         |  ^~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:31,663   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,663      77 |  "End of file",
2024-02-26T12:36:31,664         |  ^~~~~~~~~~~~~
2024-02-26T12:36:31,664   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-02-26T12:36:31,664      78 |  "File not found"
2024-02-26T12:36:31,664         |  ^~~~~~~~~~~~~~~~
2024-02-26T12:36:31,668   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-02-26T12:36:31,668   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,668     459 |     while (size >= num && num_of_bits < 32)
2024-02-26T12:36:31,668         |            ~~~~~^~~~~~
2024-02-26T12:36:31,669   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-02-26T12:36:31,669   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,669     505 |     while (bytes[num_of_bytes] >= num)
2024-02-26T12:36:31,669         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:36:31,671   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-02-26T12:36:31,671   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,671     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-02-26T12:36:31,672         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:31,672   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,672     616 |   for (i = 0; i < num_of_bytes; i++)
2024-02-26T12:36:31,672         |               ~~^~~~~~~~~~~~~~
2024-02-26T12:36:31,672   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,672     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-02-26T12:36:31,673         |               ~~^~~~~~~~~~~~~~~~
2024-02-26T12:36:31,673   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-02-26T12:36:31,673   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,673     664 |   if (lastbits < num_of_bits)
2024-02-26T12:36:31,673         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-02-26T12:36:31,676   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-02-26T12:36:31,676   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,677     785 |  if(size3>xfp->buf1size)
2024-02-26T12:36:31,677         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:31,678   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,678     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:31,679         |                   ^
2024-02-26T12:36:31,681   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,681     932 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:31,681         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:31,681   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,682     935 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:31,682         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:31,682   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,682     938 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:31,682         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:31,682   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,682     945 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:31,683         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:31,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,683     948 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:31,683         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:31,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,683     951 |     if(countmjh >= size3 ) { return -1; }
2024-02-26T12:36:31,683         |        ~~~~~~~~~^~~~~~~~
2024-02-26T12:36:31,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:31,684     756 |  int smallidx,  minidx, maxidx;
2024-02-26T12:36:31,684         |                 ^~~~~~
2024-02-26T12:36:31,684   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:31,684     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:36:31,684         |                         ^~~~~~
2024-02-26T12:36:31,684   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:36:31,684     763 |  int errval=1;
2024-02-26T12:36:31,685         |      ^~~~~~
2024-02-26T12:36:31,685   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-02-26T12:36:31,685   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,686    1011 |  if(size3>xfp->buf1size)
2024-02-26T12:36:31,686         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:31,687   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,688    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:36:31,688         |                     ~~~~~~~~^~~~~~~
2024-02-26T12:36:31,688   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,688    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:36:31,688         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:36:31,689   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,689    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-02-26T12:36:31,689         |                    ~~~~~~~~^~~~~~~
2024-02-26T12:36:31,690   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,690    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-02-26T12:36:31,691         |                  ^
2024-02-26T12:36:31,691   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,691    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:31,691         |                   ^
2024-02-26T12:36:31,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,695    1275 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:36:31,695         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:31,695   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:31,695    1001 |  int errval;
2024-02-26T12:36:31,695         |      ^~~~~~
2024-02-26T12:36:31,698   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-02-26T12:36:31,698   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,698    1316 |  if(size3>xfp->buf1size)
2024-02-26T12:36:31,698         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:31,700   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,700    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:31,700         |                   ^
2024-02-26T12:36:31,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:31,703    1289 |  int smallidx,  maxidx, minidx;
2024-02-26T12:36:31,703         |                         ^~~~~~
2024-02-26T12:36:31,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:31,703    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-02-26T12:36:31,703         |                         ^~~~~~
2024-02-26T12:36:31,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-02-26T12:36:31,704    1297 |  int errval=1;
2024-02-26T12:36:31,704         |      ^~~~~~
2024-02-26T12:36:31,705   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-02-26T12:36:31,705   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,705    1513 |  if(size3>xfp->buf1size) {
2024-02-26T12:36:31,705         |     ~~~~~^~~~~~~~~~~~~~
2024-02-26T12:36:31,709   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,709    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-02-26T12:36:31,710         |                  ^
2024-02-26T12:36:31,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:36:31,710    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-02-26T12:36:31,710         |                   ^
2024-02-26T12:36:31,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:36:31,714    1743 |  if(tmp==(unsigned int)buf2[0])
2024-02-26T12:36:31,714         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:36:31,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-02-26T12:36:31,714    1504 |  int errval=1;
2024-02-26T12:36:31,714         |      ^~~~~~
2024-02-26T12:36:33,995   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-02-26T12:36:34,089   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-02-26T12:36:34,089   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T12:36:34,090     111 |         if (slen != strlen(version)+1)
2024-02-26T12:36:34,090         |                  ^~
2024-02-26T12:36:34,090   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-02-26T12:36:34,090     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-02-26T12:36:34,090         |                                              ^~
2024-02-26T12:36:34,655   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-02-26T12:36:34,981   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:36:34,981                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:36:34,982                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:36:34,982                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-02-26T12:36:34,982   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:36:34,982      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:36:34,982         |  ^~~~~~~
2024-02-26T12:36:35,605   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-02-26T12:36:35,613   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-02-26T12:36:35,614   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-02-26T12:36:35,614         |                                     ^~
2024-02-26T12:36:55,965   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-02-26T12:36:55,965   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:36:55,965    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T12:36:55,966         |                                        ^~~~~~~~~~~~~~~
2024-02-26T12:36:55,974   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T12:36:55,974   14242 |   int __pyx_v_status;
2024-02-26T12:36:55,974         |       ^~~~~~~~~~~~~~
2024-02-26T12:37:06,295   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-02-26T12:37:06,302   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,302   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T12:37:06,302         |                   ^
2024-02-26T12:37:06,309   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,309   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:37:06,309         |                   ^
2024-02-26T12:37:06,310   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,310    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T12:37:06,310         |                                                                                               ^
2024-02-26T12:37:06,316   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-02-26T12:37:06,316   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-02-26T12:37:06,316         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-02-26T12:37:06,322   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,322   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-02-26T12:37:06,322         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:37:06,329   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,329   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-02-26T12:37:06,329         |                   ^
2024-02-26T12:37:06,336   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,336   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:37:06,336         |                   ^
2024-02-26T12:37:06,337   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,337    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-02-26T12:37:06,337         |                                                                                               ^
2024-02-26T12:37:06,343   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-02-26T12:37:06,343   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-02-26T12:37:06,343         |                     ^~~~~~~~~~~~~~~~~~~~
2024-02-26T12:37:06,349   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,349   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-02-26T12:37:06,349         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-02-26T12:37:06,355   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,355   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:37:06,355         |                 ^
2024-02-26T12:37:06,365   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,365   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T12:37:06,365         |                 ^
2024-02-26T12:37:06,369   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,370   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:37:06,370         |                   ^
2024-02-26T12:37:06,377   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,377   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T12:37:06,377         |                   ^
2024-02-26T12:37:06,383   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,384   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-02-26T12:37:06,384         |                   ^
2024-02-26T12:37:06,391   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:06,391   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-02-26T12:37:06,391         |                   ^
2024-02-26T12:37:12,883   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:37:13,066   building 'moleculekit.dcd' extension
2024-02-26T12:37:13,067   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-02-26T12:37:13,068   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-02-26T12:37:13,069   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-02-26T12:37:13,388   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:37:13,388                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:37:13,388                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:37:13,388                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-02-26T12:37:13,389   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:37:13,389      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:37:13,389         |  ^~~~~~~
2024-02-26T12:37:14,416   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-02-26T12:37:14,416                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-02-26T12:37:14,416   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,416     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T12:37:14,417         |            ^~~~~~~~~~~~~
2024-02-26T12:37:14,417   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,417     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T12:37:14,417         |            ^~~~~~~~~~~~~~
2024-02-26T12:37:14,417   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,417     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-02-26T12:37:14,418         |            ^~~~~~~~~~~~~~~
2024-02-26T12:37:14,418   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,418     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-02-26T12:37:14,418         |                   ^~~~~~~~~
2024-02-26T12:37:14,418   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,418     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-02-26T12:37:14,419         |                   ^~~~~~~~~
2024-02-26T12:37:14,419   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,419     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-02-26T12:37:14,419         |                   ^~~~~~~~~
2024-02-26T12:37:14,419   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,419     394 | static int fio_fclose(fio_fd fd) {
2024-02-26T12:37:14,419         |            ^~~~~~~~~~
2024-02-26T12:37:14,420   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-02-26T12:37:14,420     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-02-26T12:37:14,420         |            ^~~~~~~~
2024-02-26T12:37:27,041   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-02-26T12:37:27,042   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:27,042    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T12:37:27,042         |                                        ^~~~~~~~~~~~~~~
2024-02-26T12:37:27,047   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T12:37:27,047    8004 |   int __pyx_v_i;
2024-02-26T12:37:27,047         |       ^~~~~~~~~
2024-02-26T12:37:30,359   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-02-26T12:37:30,547   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-02-26T12:37:30,547   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:37:30,548     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T12:37:30,548         |                                                       ^~
2024-02-26T12:37:30,548   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:37:30,548     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-02-26T12:37:30,548         |                                                      ^~
2024-02-26T12:37:30,548   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:37:30,549     194 |     if (input_integer[0] != dcdcordmagic)
2024-02-26T12:37:30,549         |                          ^~
2024-02-26T12:37:30,551   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:37:30,552     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T12:37:30,552         |                                               ^~
2024-02-26T12:37:30,552   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-02-26T12:37:30,552     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-02-26T12:37:30,552         |                                               ^~
2024-02-26T12:37:30,556   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-02-26T12:37:30,556   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:37:30,556     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-02-26T12:37:30,556         |                       ^~
2024-02-26T12:37:30,557   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-02-26T12:37:30,557     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-02-26T12:37:30,557         |                                                 ^~
2024-02-26T12:37:30,579   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-02-26T12:37:30,580   At top level:
2024-02-26T12:37:30,580   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-02-26T12:37:30,580      96 | static void swap2_aligned(void *v, long ndata) {
2024-02-26T12:37:30,580         |             ^~~~~~~~~~~~~
2024-02-26T12:37:30,580   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-02-26T12:37:30,581      32 | static void swap2_unaligned(void *v, long ndata) {
2024-02-26T12:37:30,581         |             ^~~~~~~~~~~~~~~
2024-02-26T12:37:30,581   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-02-26T12:37:30,581   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-02-26T12:37:30,581     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-02-26T12:37:30,581         |            ^~~~~~~~~~~~~
2024-02-26T12:37:30,581   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-02-26T12:37:30,582     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-02-26T12:37:30,582         |            ^~~~~~~~~~~~~~
2024-02-26T12:37:31,728   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:37:31,873   building 'moleculekit.binpos' extension
2024-02-26T12:37:31,874   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-02-26T12:37:31,875   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-02-26T12:37:31,876   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-02-26T12:37:32,200   In file included from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-02-26T12:37:32,201                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-02-26T12:37:32,201                    from /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-02-26T12:37:32,201                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-02-26T12:37:32,201   /tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-02-26T12:37:32,201      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-02-26T12:37:32,201         |  ^~~~~~~
2024-02-26T12:37:45,636   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-02-26T12:37:45,641   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:45,641    8027 |   if (__pyx_t_1) {
2024-02-26T12:37:45,641         |      ^
2024-02-26T12:37:45,645   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-02-26T12:37:45,646    7504 |   int __pyx_v_status;
2024-02-26T12:37:45,646         |       ^~~~~~~~~~~~~~
2024-02-26T12:37:45,647   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-02-26T12:37:45,647    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-02-26T12:37:45,647         |                                        ^~~~~~~~~~~~~~~
2024-02-26T12:37:45,651   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-02-26T12:37:45,652    7501 |   int __pyx_v_i;
2024-02-26T12:37:45,652         |       ^~~~~~~~~
2024-02-26T12:37:47,934   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-02-26T12:37:48,240   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:37:48,381   building 'moleculekit.tmalign' extension
2024-02-26T12:37:48,382   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-02-26T12:37:48,382   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-02-26T12:37:48,384   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-02-26T12:38:17,895   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-57cp6b4p/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-02-26T12:38:36,454   In file included from /usr/include/c++/10/vector:72,
2024-02-26T12:38:36,454                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-26T12:38:36,455   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-02-26T12:38:36,455   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-02-26T12:38:36,455     426 |       vector<_Tp, _Alloc>::
2024-02-26T12:38:36,455         |       ^~~~~~~~~~~~~~~~~~~
2024-02-26T12:38:37,032   In file included from /usr/include/c++/10/vector:67,
2024-02-26T12:38:37,032                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-02-26T12:38:37,032   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-02-26T12:38:37,032   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T12:38:37,033    1198 |    _M_realloc_insert(end(), __x);
2024-02-26T12:38:37,033         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:38:37,033   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T12:38:37,033    1198 |    _M_realloc_insert(end(), __x);
2024-02-26T12:38:37,033         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:38:37,034   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-02-26T12:38:37,034    1198 |    _M_realloc_insert(end(), __x);
2024-02-26T12:38:37,034         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-02-26T12:38:39,592   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-02-26T12:38:40,091   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-02-26T12:38:40,091   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.24'
2024-02-26T12:38:40,091   installing to build/bdist.linux-armv7l/wheel
2024-02-26T12:38:40,091   running install
2024-02-26T12:38:40,117   running install_lib
2024-02-26T12:38:40,123   creating build/bdist.linux-armv7l
2024-02-26T12:38:40,123   creating build/bdist.linux-armv7l/wheel
2024-02-26T12:38:40,126   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,129   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,151   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T12:38:40,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T12:38:40,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-02-26T12:38:40,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-02-26T12:38:40,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,175   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,219   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T12:38:40,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T12:38:40,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-02-26T12:38:40,268   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T12:38:40,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T12:38:40,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-02-26T12:38:40,307   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T12:38:40,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T12:38:40,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-02-26T12:38:40,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,450   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T12:38:40,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T12:38:40,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-02-26T12:38:40,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-02-26T12:38:40,543   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T12:38:40,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T12:38:40,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-02-26T12:38:40,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,582   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:38:40,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:38:40,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:38:40,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:38:40,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-02-26T12:38:40,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,597   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:38:40,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:38:40,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:38:40,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-02-26T12:38:40,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,616   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T12:38:40,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T12:38:40,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-02-26T12:38:40,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:40,679   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:38:40,681   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:38:40,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:38:40,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:38:40,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-02-26T12:38:40,720   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T12:38:40,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-02-26T12:38:40,725   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:38:40,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:38:40,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:38:40,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-02-26T12:38:40,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:38:40,743   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:38:40,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:38:40,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:38:40,750   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T12:38:40,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-02-26T12:38:40,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-02-26T12:38:40,778   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:38:40,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:38:40,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:38:40,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:38:40,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:38:40,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-02-26T12:38:40,796   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,807   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:38:40,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:38:40,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:38:40,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:38:40,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:38:40,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-02-26T12:38:40,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-02-26T12:38:40,917   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-02-26T12:38:40,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:38:40,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-02-26T12:38:40,943   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T12:38:40,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T12:38:40,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-02-26T12:38:40,968   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T12:38:40,969   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:38:40,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:38:40,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:38:40,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:38:40,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-02-26T12:38:40,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-02-26T12:38:40,981   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:38:40,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:38:40,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:38:40,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:38:40,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-02-26T12:38:40,995   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T12:38:40,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T12:38:40,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-02-26T12:38:40,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,004   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T12:38:41,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T12:38:41,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-02-26T12:38:41,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,116   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,117   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:38:41,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:38:41,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:38:41,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:38:41,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-02-26T12:38:41,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-02-26T12:38:41,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:41,329   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T12:38:41,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T12:38:41,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-02-26T12:38:41,359   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:38:41,360   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T12:38:41,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-02-26T12:38:41,363   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-02-26T12:38:41,366   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,502   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,607   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-02-26T12:38:41,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:38:41,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:38:41,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-02-26T12:38:42,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,153   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-02-26T12:38:42,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,274   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:38:42,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:38:42,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:38:42,316   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T12:38:42,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-02-26T12:38:42,327   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T12:38:42,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-02-26T12:38:42,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-02-26T12:38:42,337   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T12:38:42,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T12:38:42,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-02-26T12:38:42,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-02-26T12:38:42,425   running install_egg_info
2024-02-26T12:38:42,434   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.24-py3.9.egg-info
2024-02-26T12:38:42,452   running install_scripts
2024-02-26T12:38:42,527   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.24.dist-info/WHEEL
2024-02-26T12:38:42,531   creating '/tmp/pip-wheel-sk9ykr45/.tmp-0i76d11l/moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-02-26T12:38:42,534   adding 'moleculekit/__init__.py'
2024-02-26T12:38:42,536   adding 'moleculekit/_version.py'
2024-02-26T12:38:42,537   adding 'moleculekit/align.py'
2024-02-26T12:38:42,846   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:43,007   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:43,013   adding 'moleculekit/bondguesser.py'
2024-02-26T12:38:43,255   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:43,264   adding 'moleculekit/config.py'
2024-02-26T12:38:43,520   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:43,692   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:43,699   adding 'moleculekit/dihedral.py'
2024-02-26T12:38:43,700   adding 'moleculekit/distance.py'
2024-02-26T12:38:44,018   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:44,030   adding 'moleculekit/home.py'
2024-02-26T12:38:44,031   adding 'moleculekit/logging.ini'
2024-02-26T12:38:44,047   adding 'moleculekit/molecule.py'
2024-02-26T12:38:44,273   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:44,282   adding 'moleculekit/opm.py'
2024-02-26T12:38:44,284   adding 'moleculekit/periodictable.py'
2024-02-26T12:38:44,285   adding 'moleculekit/pymolgraphics.py'
2024-02-26T12:38:44,286   adding 'moleculekit/rcsb.py'
2024-02-26T12:38:44,288   adding 'moleculekit/rdkitintegration.py'
2024-02-26T12:38:44,301   adding 'moleculekit/readers.py'
2024-02-26T12:38:44,902   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:45,213   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:45,225   adding 'moleculekit/util.py'
2024-02-26T12:38:45,226   adding 'moleculekit/version.py'
2024-02-26T12:38:45,228   adding 'moleculekit/viewer.py'
2024-02-26T12:38:45,229   adding 'moleculekit/vmd_wrapper'
2024-02-26T12:38:45,231   adding 'moleculekit/vmdgraphics.py'
2024-02-26T12:38:45,233   adding 'moleculekit/vmdviewer.py'
2024-02-26T12:38:45,485   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:45,499   adding 'moleculekit/writers.py'
2024-02-26T12:38:45,766   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:45,775   adding 'moleculekit/atomselect/__init__.py'
2024-02-26T12:38:45,777   adding 'moleculekit/atomselect/analyze.py'
2024-02-26T12:38:45,779   adding 'moleculekit/atomselect/atomselect.py'
2024-02-26T12:38:45,781   adding 'moleculekit/atomselect/languageparser.py'
2024-02-26T12:38:45,884   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-02-26T12:38:45,896   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-02-26T12:38:45,987   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-02-26T12:38:45,996   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-02-26T12:38:46,086   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-02-26T12:38:46,094   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-02-26T12:38:46,195   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-02-26T12:38:46,205   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-02-26T12:38:46,207   adding 'moleculekit/fileformats/__init__.py'
2024-02-26T12:38:46,213   adding 'moleculekit/fileformats/netcdf.py'
2024-02-26T12:38:46,214   adding 'moleculekit/fileformats/utils.py'
2024-02-26T12:38:46,276   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-02-26T12:38:46,283   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-02-26T12:38:46,284   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-02-26T12:38:46,286   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-02-26T12:38:46,287   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-02-26T12:38:46,292   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-02-26T12:38:46,295   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-02-26T12:38:46,357   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-02-26T12:38:46,365   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-02-26T12:38:46,367   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-02-26T12:38:46,369   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-02-26T12:38:46,371   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-02-26T12:38:46,373   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-02-26T12:38:46,374   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-02-26T12:38:46,379   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-02-26T12:38:46,385   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-02-26T12:38:46,480   adding 'moleculekit/fileformats/xtc/trr.c'
2024-02-26T12:38:46,492   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-02-26T12:38:46,494   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-02-26T12:38:46,495   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-02-26T12:38:46,584   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-02-26T12:38:46,592   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-02-26T12:38:46,594   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-02-26T12:38:46,595   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-02-26T12:38:46,596   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-02-26T12:38:46,599   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-02-26T12:38:46,601   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-02-26T12:38:46,602   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-02-26T12:38:46,603   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-02-26T12:38:46,605   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-02-26T12:38:46,612   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-02-26T12:38:46,614   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-02-26T12:38:46,616   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-02-26T12:38:46,618   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-02-26T12:38:46,620   adding 'moleculekit/interactions/__init__.py'
2024-02-26T12:38:46,903   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:47,172   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:47,183   adding 'moleculekit/interactions/interactions.py'
2024-02-26T12:38:47,465   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:47,753   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-02-26T12:38:47,854   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-02-26T12:38:47,863   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-02-26T12:38:47,955   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-02-26T12:38:47,964   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-02-26T12:38:48,056   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-02-26T12:38:48,065   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-02-26T12:38:48,157   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-02-26T12:38:48,166   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-02-26T12:38:48,254   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-02-26T12:38:48,262   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-02-26T12:38:48,264   adding 'moleculekit/pdbx/__init__.py'
2024-02-26T12:38:48,268   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-02-26T12:38:48,271   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-02-26T12:38:48,273   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-02-26T12:38:48,275   adding 'moleculekit/pdbx/reader/__init__.py'
2024-02-26T12:38:48,277   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-02-26T12:38:48,279   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-02-26T12:38:48,281   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-02-26T12:38:48,282   adding 'moleculekit/pdbx/tests/__init__.py'
2024-02-26T12:38:48,284   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-02-26T12:38:48,285   adding 'moleculekit/pdbx/writer/__init__.py'
2024-02-26T12:38:48,287   adding 'moleculekit/ply/__init__.py'
2024-02-26T12:38:48,291   adding 'moleculekit/ply/lex.py'
2024-02-26T12:38:48,303   adding 'moleculekit/ply/yacc.py'
2024-02-26T12:38:48,305   adding 'moleculekit/projections/__init__.py'
2024-02-26T12:38:48,307   adding 'moleculekit/projections/metriccoordinate.py'
2024-02-26T12:38:48,311   adding 'moleculekit/projections/metricdihedral.py'
2024-02-26T12:38:48,315   adding 'moleculekit/projections/metricdistance.py'
2024-02-26T12:38:48,317   adding 'moleculekit/projections/metricfluctuation.py'
2024-02-26T12:38:48,318   adding 'moleculekit/projections/metricgyration.py'
2024-02-26T12:38:48,322   adding 'moleculekit/projections/metricplumed2.py'
2024-02-26T12:38:48,324   adding 'moleculekit/projections/metricrmsd.py'
2024-02-26T12:38:48,326   adding 'moleculekit/projections/metricsasa.py'
2024-02-26T12:38:48,328   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-02-26T12:38:48,330   adding 'moleculekit/projections/metricshell.py'
2024-02-26T12:38:48,331   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-02-26T12:38:48,333   adding 'moleculekit/projections/metrictmscore.py'
2024-02-26T12:38:48,334   adding 'moleculekit/projections/projection.py'
2024-02-26T12:38:48,336   adding 'moleculekit/projections/util.py'
2024-02-26T12:38:48,338   adding 'moleculekit/share/ALA.cif'
2024-02-26T12:38:48,339   adding 'moleculekit/share/backbone.cif'
2024-02-26T12:38:49,650   adding 'moleculekit/share/opm_sequences.json'
2024-02-26T12:38:49,737   adding 'moleculekit/share/atomselect/atomselect.json'
2024-02-26T12:38:49,742   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-02-26T12:38:49,743   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-02-26T12:38:49,745   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-02-26T12:38:49,746   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-02-26T12:38:49,747   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-02-26T12:38:49,748   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-02-26T12:38:49,750   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-02-26T12:38:49,751   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-02-26T12:38:49,752   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-02-26T12:38:49,754   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-02-26T12:38:49,755   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-02-26T12:38:49,756   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-02-26T12:38:49,757   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-02-26T12:38:49,759   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-02-26T12:38:49,760   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-02-26T12:38:49,761   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-02-26T12:38:49,762   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-02-26T12:38:49,764   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-02-26T12:38:49,765   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-02-26T12:38:49,766   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-02-26T12:38:49,768   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-02-26T12:38:49,769   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-02-26T12:38:49,770   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-02-26T12:38:49,772   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-02-26T12:38:49,773   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-02-26T12:38:49,774   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-02-26T12:38:49,776   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-02-26T12:38:49,777   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-02-26T12:38:49,778   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-02-26T12:38:49,779   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-02-26T12:38:49,781   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-02-26T12:38:49,782   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-02-26T12:38:49,783   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-02-26T12:38:49,784   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-02-26T12:38:49,786   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-02-26T12:38:49,787   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-02-26T12:38:49,788   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-02-26T12:38:49,790   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-02-26T12:38:49,791   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-02-26T12:38:49,792   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-02-26T12:38:49,793   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-02-26T12:38:49,795   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-02-26T12:38:49,796   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-02-26T12:38:49,797   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-02-26T12:38:49,799   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-02-26T12:38:49,800   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-02-26T12:38:49,801   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-02-26T12:38:49,802   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-02-26T12:38:49,803   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-02-26T12:38:49,805   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-02-26T12:38:49,806   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-02-26T12:38:49,807   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-02-26T12:38:49,809   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-02-26T12:38:49,810   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-02-26T12:38:49,811   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-02-26T12:38:49,812   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-02-26T12:38:49,814   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-02-26T12:38:49,815   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-02-26T12:38:49,816   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-02-26T12:38:49,817   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-02-26T12:38:49,819   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-02-26T12:38:49,820   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-02-26T12:38:49,821   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-02-26T12:38:49,822   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-02-26T12:38:49,824   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-02-26T12:38:49,825   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-02-26T12:38:49,827   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-02-26T12:38:49,828   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-02-26T12:38:49,829   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-02-26T12:38:49,830   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-02-26T12:38:49,832   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-02-26T12:38:49,833   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-02-26T12:38:49,834   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-02-26T12:38:49,836   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-02-26T12:38:49,837   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-02-26T12:38:49,838   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-02-26T12:38:49,839   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-02-26T12:38:49,841   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-02-26T12:38:49,842   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-02-26T12:38:49,843   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-02-26T12:38:49,844   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-02-26T12:38:49,846   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-02-26T12:38:49,847   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-02-26T12:38:49,848   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-02-26T12:38:49,850   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-02-26T12:38:49,851   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-02-26T12:38:49,852   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-02-26T12:38:49,853   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-02-26T12:38:49,855   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-02-26T12:38:49,856   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-02-26T12:38:49,857   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-02-26T12:38:49,858   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-02-26T12:38:49,860   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-02-26T12:38:49,861   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-02-26T12:38:49,862   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-02-26T12:38:49,863   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-02-26T12:38:49,865   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-02-26T12:38:49,866   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-02-26T12:38:49,868   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-02-26T12:38:49,869   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-02-26T12:38:49,870   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-02-26T12:38:49,871   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-02-26T12:38:49,873   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-02-26T12:38:49,874   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-02-26T12:38:49,875   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-02-26T12:38:49,877   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-02-26T12:38:49,878   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-02-26T12:38:49,879   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-02-26T12:38:49,881   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-02-26T12:38:49,882   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-02-26T12:38:49,883   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-02-26T12:38:49,885   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-02-26T12:38:49,886   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-02-26T12:38:49,887   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-02-26T12:38:49,889   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-02-26T12:38:49,890   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-02-26T12:38:49,891   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-02-26T12:38:49,892   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-02-26T12:38:49,894   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-02-26T12:38:49,895   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-02-26T12:38:49,896   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-02-26T12:38:49,897   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-02-26T12:38:49,899   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-02-26T12:38:49,900   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-02-26T12:38:49,901   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-02-26T12:38:49,903   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-02-26T12:38:49,904   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-02-26T12:38:49,905   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-02-26T12:38:49,906   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-02-26T12:38:49,908   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-02-26T12:38:49,909   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-02-26T12:38:49,910   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-02-26T12:38:49,911   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-02-26T12:38:49,913   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-02-26T12:38:49,914   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-02-26T12:38:49,915   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-02-26T12:38:49,917   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-02-26T12:38:49,918   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-02-26T12:38:49,919   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-02-26T12:38:49,921   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-02-26T12:38:49,922   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-02-26T12:38:49,923   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-02-26T12:38:49,925   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-02-26T12:38:49,926   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-02-26T12:38:49,928   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-02-26T12:38:49,929   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-02-26T12:38:49,931   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-02-26T12:38:49,932   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-02-26T12:38:49,934   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-02-26T12:38:49,935   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-02-26T12:38:49,937   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-02-26T12:38:49,938   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-02-26T12:38:49,939   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-02-26T12:38:49,941   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-02-26T12:38:49,942   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-02-26T12:38:49,944   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-02-26T12:38:49,945   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-02-26T12:38:49,946   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-02-26T12:38:49,948   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-02-26T12:38:49,949   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-02-26T12:38:49,950   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-02-26T12:38:49,951   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-02-26T12:38:49,953   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-02-26T12:38:49,954   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-02-26T12:38:49,955   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-02-26T12:38:49,956   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-02-26T12:38:49,958   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-02-26T12:38:49,959   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-02-26T12:38:49,960   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-02-26T12:38:49,961   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-02-26T12:38:49,963   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-02-26T12:38:49,964   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-02-26T12:38:49,965   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-02-26T12:38:49,966   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-02-26T12:38:49,968   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-02-26T12:38:49,969   adding 'moleculekit/smallmol/__init__.py'
2024-02-26T12:38:49,975   adding 'moleculekit/smallmol/smallmol.py'
2024-02-26T12:38:49,977   adding 'moleculekit/smallmol/smallmollib.py'
2024-02-26T12:38:49,979   adding 'moleculekit/smallmol/test_smallmol.py'
2024-02-26T12:38:49,980   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-02-26T12:38:49,982   adding 'moleculekit/smallmol/util.py'
2024-02-26T12:38:49,984   adding 'moleculekit/smallmol/tools/__init__.py'
2024-02-26T12:38:49,986   adding 'moleculekit/smallmol/tools/clustering.py'
2024-02-26T12:38:49,988   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-02-26T12:38:49,989   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-02-26T12:38:50,079   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-02-26T12:38:50,088   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-02-26T12:38:50,090   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-02-26T12:38:50,091   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-02-26T12:38:50,109   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-02-26T12:38:50,112   adding 'moleculekit/tools/__init__.py'
2024-02-26T12:38:50,114   adding 'moleculekit/tools/atomtyper.py'
2024-02-26T12:38:50,116   adding 'moleculekit/tools/autosegment.py'
2024-02-26T12:38:50,118   adding 'moleculekit/tools/crystalpacking.py'
2024-02-26T12:38:50,122   adding 'moleculekit/tools/detect.py'
2024-02-26T12:38:50,124   adding 'moleculekit/tools/docking.py'
2024-02-26T12:38:50,126   adding 'moleculekit/tools/graphalignment.py'
2024-02-26T12:38:50,127   adding 'moleculekit/tools/hhblitsprofile.py'
2024-02-26T12:38:50,129   adding 'moleculekit/tools/modelling.py'
2024-02-26T12:38:50,131   adding 'moleculekit/tools/moleculechecks.py'
2024-02-26T12:38:50,137   adding 'moleculekit/tools/preparation.py'
2024-02-26T12:38:50,139   adding 'moleculekit/tools/preparation_customres.py'
2024-02-26T12:38:50,141   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-02-26T12:38:50,144   adding 'moleculekit/tools/voxeldescriptors.py'
2024-02-26T12:38:50,146   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-02-26T12:38:50,148   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-02-26T12:38:50,239   adding 'moleculekit/wrapping/wrapping.cpp'
2024-02-26T12:38:50,249   adding 'moleculekit/wrapping/wrapping.pyx'
2024-02-26T12:38:50,251   adding 'moleculekit-1.8.24.dist-info/LICENSE'
2024-02-26T12:38:50,253   adding 'moleculekit-1.8.24.dist-info/METADATA'
2024-02-26T12:38:50,254   adding 'moleculekit-1.8.24.dist-info/WHEEL'
2024-02-26T12:38:50,255   adding 'moleculekit-1.8.24.dist-info/top_level.txt'
2024-02-26T12:38:50,260   adding 'moleculekit-1.8.24.dist-info/RECORD'
2024-02-26T12:38:50,573   removing build/bdist.linux-armv7l/wheel
2024-02-26T12:38:50,881   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-02-26T12:38:51,214   Created wheel for moleculekit: filename=moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl size=14879300 sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d
2024-02-26T12:38:51,215   Stored in directory: /tmp/pip-ephem-wheel-cache-a_plnxc9/wheels/d9/49/d4/782cf12d47db823a432095a17838e94b7a36719d65757d3b66
2024-02-26T12:38:51,243 Successfully built moleculekit
2024-02-26T12:38:51,965 Removed build tracker: '/tmp/pip-build-tracker-3t_6lw73'