2024-02-27T19:29:52,337 Created temporary directory: /tmp/pip-build-tracker-w1ed25sa 2024-02-27T19:29:52,338 Initialized build tracking at /tmp/pip-build-tracker-w1ed25sa 2024-02-27T19:29:52,338 Created build tracker: /tmp/pip-build-tracker-w1ed25sa 2024-02-27T19:29:52,339 Entered build tracker: /tmp/pip-build-tracker-w1ed25sa 2024-02-27T19:29:52,339 Created temporary directory: /tmp/pip-wheel-lxj18045 2024-02-27T19:29:52,342 Created temporary directory: /tmp/pip-ephem-wheel-cache-_4mtwytv 2024-02-27T19:29:52,364 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-27T19:29:52,368 2 location(s) to search for versions of scarcc: 2024-02-27T19:29:52,368 * https://pypi.org/simple/scarcc/ 2024-02-27T19:29:52,368 * https://www.piwheels.org/simple/scarcc/ 2024-02-27T19:29:52,368 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-02-27T19:29:52,369 Getting page https://pypi.org/simple/scarcc/ 2024-02-27T19:29:52,371 Found index url https://pypi.org/simple/ 2024-02-27T19:29:52,592 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-02-27T19:29:52,594 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-02-27T19:29:52,595 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-02-27T19:29:52,595 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-02-27T19:29:52,596 Getting page https://www.piwheels.org/simple/scarcc/ 2024-02-27T19:29:52,597 Found index url https://www.piwheels.org/simple/ 2024-02-27T19:29:53,084 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-02-27T19:29:53,086 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-02-27T19:29:53,087 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-02-27T19:29:53,129 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-02-27T19:29:53,169 Collecting scarcc==0.0.10 2024-02-27T19:29:53,173 Created temporary directory: /tmp/pip-unpack-8khvm4oq 2024-02-27T19:29:53,385 Downloading scarcc-0.0.10.tar.gz (41 kB) 2024-02-27T19:29:53,535 Added scarcc==0.0.10 from https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz to build tracker '/tmp/pip-build-tracker-w1ed25sa' 2024-02-27T19:29:53,539 Created temporary directory: /tmp/pip-build-env-odu99jjn 2024-02-27T19:29:53,544 Installing build dependencies: started 2024-02-27T19:29:53,545 Running command pip subprocess to install build dependencies 2024-02-27T19:29:54,730 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-27T19:29:55,349 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-27T19:29:57,679 Collecting setuptools>=40.6.0 2024-02-27T19:29:58,862 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB) 2024-02-27T19:30:03,204 Collecting wheel 2024-02-27T19:30:07,005 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-27T19:30:10,557 Installing collected packages: wheel, setuptools 2024-02-27T19:30:10,789 Creating /tmp/pip-build-env-odu99jjn/overlay/local/bin 2024-02-27T19:30:10,792 changing mode of /tmp/pip-build-env-odu99jjn/overlay/local/bin/wheel to 755 2024-02-27T19:30:13,151 Successfully installed setuptools-69.1.1 wheel-0.42.0 2024-02-27T19:30:13,670 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-27T19:30:13,670 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-27T19:30:13,946 Installing build dependencies: finished with status 'done' 2024-02-27T19:30:13,949 Getting requirements to build wheel: started 2024-02-27T19:30:13,950 Running command Getting requirements to build wheel 2024-02-27T19:30:15,684 running egg_info 2024-02-27T19:30:15,689 writing src/scarcc.egg-info/PKG-INFO 2024-02-27T19:30:15,692 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-02-27T19:30:15,695 writing requirements to src/scarcc.egg-info/requires.txt 2024-02-27T19:30:15,696 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-02-27T19:30:15,736 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:15,740 adding license file 'LICENSE' 2024-02-27T19:30:15,743 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:15,820 Getting requirements to build wheel: finished with status 'done' 2024-02-27T19:30:15,832 Created temporary directory: /tmp/pip-modern-metadata-3lgsz4bc 2024-02-27T19:30:15,835 Preparing metadata (pyproject.toml): started 2024-02-27T19:30:15,837 Running command Preparing metadata (pyproject.toml) 2024-02-27T19:30:16,381 running dist_info 2024-02-27T19:30:16,400 creating /tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info 2024-02-27T19:30:16,404 writing /tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/PKG-INFO 2024-02-27T19:30:16,408 writing dependency_links to /tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/dependency_links.txt 2024-02-27T19:30:16,410 writing requirements to /tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/requires.txt 2024-02-27T19:30:16,411 writing top-level names to /tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/top_level.txt 2024-02-27T19:30:16,412 writing manifest file '/tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:16,444 reading manifest file '/tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:16,446 adding license file 'LICENSE' 2024-02-27T19:30:16,449 writing manifest file '/tmp/pip-modern-metadata-3lgsz4bc/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:16,450 creating '/tmp/pip-modern-metadata-3lgsz4bc/scarcc-0.0.10.dist-info' 2024-02-27T19:30:16,637 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-27T19:30:16,641 Source in /tmp/pip-wheel-lxj18045/scarcc_ddbac3d3a62346f4aacf66ffb2238c87 has version 0.0.10, which satisfies requirement scarcc==0.0.10 from https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz 2024-02-27T19:30:16,643 Removed scarcc==0.0.10 from https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz from build tracker '/tmp/pip-build-tracker-w1ed25sa' 2024-02-27T19:30:16,646 Created temporary directory: /tmp/pip-unpack-211bt3hu 2024-02-27T19:30:16,647 Created temporary directory: /tmp/pip-unpack-24u310nk 2024-02-27T19:30:16,652 Building wheels for collected packages: scarcc 2024-02-27T19:30:16,656 Created temporary directory: /tmp/pip-wheel-aoposj4r 2024-02-27T19:30:16,657 Destination directory: /tmp/pip-wheel-aoposj4r 2024-02-27T19:30:16,659 Building wheel for scarcc (pyproject.toml): started 2024-02-27T19:30:16,660 Running command Building wheel for scarcc (pyproject.toml) 2024-02-27T19:30:17,201 running bdist_wheel 2024-02-27T19:30:17,244 running build 2024-02-27T19:30:17,245 running build_py 2024-02-27T19:30:17,253 creating build 2024-02-27T19:30:17,254 creating build/lib 2024-02-27T19:30:17,255 creating build/lib/scarcc 2024-02-27T19:30:17,256 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-02-27T19:30:17,259 creating build/lib/scarcc/data_analysis 2024-02-27T19:30:17,260 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-02-27T19:30:17,262 creating build/lib/scarcc/sim_engine 2024-02-27T19:30:17,263 copying src/scarcc/sim_engine/result_processing.py -> build/lib/scarcc/sim_engine 2024-02-27T19:30:17,266 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-02-27T19:30:17,267 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-02-27T19:30:17,269 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-02-27T19:30:17,272 creating build/lib/scarcc/preparation 2024-02-27T19:30:17,273 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-02-27T19:30:17,275 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-02-27T19:30:17,277 creating build/lib/scarcc/util 2024-02-27T19:30:17,278 copying src/scarcc/util/util.py -> build/lib/scarcc/util 2024-02-27T19:30:17,280 copying src/scarcc/util/__init__.py -> build/lib/scarcc/util 2024-02-27T19:30:17,282 creating build/lib/scarcc/data_analysis/plot 2024-02-27T19:30:17,283 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-02-27T19:30:17,285 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-02-27T19:30:17,287 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-02-27T19:30:17,288 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-02-27T19:30:17,290 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-02-27T19:30:17,293 creating build/lib/scarcc/data_analysis/flux 2024-02-27T19:30:17,293 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-02-27T19:30:17,296 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-02-27T19:30:17,298 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-02-27T19:30:17,301 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-02-27T19:30:17,303 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-02-27T19:30:17,305 creating build/lib/scarcc/data_analysis/biomass 2024-02-27T19:30:17,306 copying src/scarcc/data_analysis/biomass/plot_growth_curve.py -> build/lib/scarcc/data_analysis/biomass 2024-02-27T19:30:17,308 copying src/scarcc/data_analysis/biomass/_pathway_summary.py -> build/lib/scarcc/data_analysis/biomass 2024-02-27T19:30:17,310 copying src/scarcc/data_analysis/biomass/growth_summary.py -> build/lib/scarcc/data_analysis/biomass 2024-02-27T19:30:17,312 copying src/scarcc/data_analysis/biomass/__init__.py -> build/lib/scarcc/data_analysis/biomass 2024-02-27T19:30:17,315 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-02-27T19:30:17,315 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-02-27T19:30:17,317 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-02-27T19:30:17,319 creating build/lib/scarcc/sim_engine/data_processing 2024-02-27T19:30:17,320 copying src/scarcc/sim_engine/data_processing/__init__.py -> build/lib/scarcc/sim_engine/data_processing 2024-02-27T19:30:17,322 copying src/scarcc/sim_engine/data_processing/preprocess_flux.py -> build/lib/scarcc/sim_engine/data_processing 2024-02-27T19:30:17,326 creating build/lib/scarcc/preparation/metabolic_model 2024-02-27T19:30:17,327 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-02-27T19:30:17,329 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-02-27T19:30:17,332 creating build/lib/scarcc/preparation/target_gene 2024-02-27T19:30:17,333 copying src/scarcc/preparation/target_gene/process_double_gene.py -> build/lib/scarcc/preparation/target_gene 2024-02-27T19:30:17,335 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-02-27T19:30:17,337 creating build/lib/scarcc/preparation/perturbation 2024-02-27T19:30:17,338 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-02-27T19:30:17,340 creating build/lib/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,341 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,343 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,345 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,347 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,349 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,350 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,354 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,357 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,360 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,362 creating build/lib/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,363 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,365 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,368 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,391 installing to build/bdist.linux-armv7l/wheel 2024-02-27T19:30:17,392 running install 2024-02-27T19:30:17,416 running install_lib 2024-02-27T19:30:17,422 creating build/bdist.linux-armv7l 2024-02-27T19:30:17,423 creating build/bdist.linux-armv7l/wheel 2024-02-27T19:30:17,424 creating build/bdist.linux-armv7l/wheel/scarcc 2024-02-27T19:30:17,426 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-02-27T19:30:17,427 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-02-27T19:30:17,428 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-02-27T19:30:17,433 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-02-27T19:30:17,435 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-02-27T19:30:17,437 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-02-27T19:30:17,439 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-02-27T19:30:17,441 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-02-27T19:30:17,442 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-02-27T19:30:17,445 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-02-27T19:30:17,447 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-02-27T19:30:17,450 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-02-27T19:30:17,451 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-02-27T19:30:17,453 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-02-27T19:30:17,455 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/biomass 2024-02-27T19:30:17,456 copying build/lib/scarcc/data_analysis/biomass/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/biomass 2024-02-27T19:30:17,459 copying build/lib/scarcc/data_analysis/biomass/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/biomass 2024-02-27T19:30:17,461 copying build/lib/scarcc/data_analysis/biomass/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/biomass 2024-02-27T19:30:17,463 copying build/lib/scarcc/data_analysis/biomass/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/biomass 2024-02-27T19:30:17,465 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-02-27T19:30:17,466 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-02-27T19:30:17,468 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-02-27T19:30:17,472 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-02-27T19:30:17,473 copying build/lib/scarcc/sim_engine/result_processing.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-02-27T19:30:17,475 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine/data_processing 2024-02-27T19:30:17,476 copying build/lib/scarcc/sim_engine/data_processing/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine/data_processing 2024-02-27T19:30:17,477 copying build/lib/scarcc/sim_engine/data_processing/preprocess_flux.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine/data_processing 2024-02-27T19:30:17,479 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-02-27T19:30:17,480 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-02-27T19:30:17,482 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-02-27T19:30:17,485 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-02-27T19:30:17,486 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-02-27T19:30:17,488 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-02-27T19:30:17,489 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-02-27T19:30:17,493 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,493 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,497 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,499 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,502 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-02-27T19:30:17,504 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-02-27T19:30:17,506 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-02-27T19:30:17,507 copying build/lib/scarcc/preparation/target_gene/process_double_gene.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-02-27T19:30:17,509 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-02-27T19:30:17,511 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-02-27T19:30:17,513 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-02-27T19:30:17,514 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,515 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,517 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,520 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,522 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-02-27T19:30:17,524 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-02-27T19:30:17,526 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,527 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,529 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,531 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-02-27T19:30:17,534 creating build/bdist.linux-armv7l/wheel/scarcc/util 2024-02-27T19:30:17,534 copying build/lib/scarcc/util/util.py -> build/bdist.linux-armv7l/wheel/scarcc/util 2024-02-27T19:30:17,536 copying build/lib/scarcc/util/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/util 2024-02-27T19:30:17,538 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-02-27T19:30:17,540 running install_egg_info 2024-02-27T19:30:17,550 running egg_info 2024-02-27T19:30:17,554 writing src/scarcc.egg-info/PKG-INFO 2024-02-27T19:30:17,556 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-02-27T19:30:17,558 writing requirements to src/scarcc.egg-info/requires.txt 2024-02-27T19:30:17,559 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-02-27T19:30:17,577 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:17,580 adding license file 'LICENSE' 2024-02-27T19:30:17,583 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-02-27T19:30:17,585 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.0.10-py3.11.egg-info 2024-02-27T19:30:17,596 running install_scripts 2024-02-27T19:30:17,608 creating build/bdist.linux-armv7l/wheel/scarcc-0.0.10.dist-info/WHEEL 2024-02-27T19:30:17,611 creating '/tmp/pip-wheel-aoposj4r/.tmp-3d8v331p/scarcc-0.0.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-27T19:30:17,613 adding 'scarcc/__init__.py' 2024-02-27T19:30:17,615 adding 'scarcc/data_analysis/__init__.py' 2024-02-27T19:30:17,617 adding 'scarcc/data_analysis/biomass/__init__.py' 2024-02-27T19:30:17,618 adding 'scarcc/data_analysis/biomass/_pathway_summary.py' 2024-02-27T19:30:17,620 adding 'scarcc/data_analysis/biomass/growth_summary.py' 2024-02-27T19:30:17,622 adding 'scarcc/data_analysis/biomass/plot_growth_curve.py' 2024-02-27T19:30:17,623 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-02-27T19:30:17,625 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-02-27T19:30:17,626 adding 'scarcc/data_analysis/flux/__init__.py' 2024-02-27T19:30:17,628 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-02-27T19:30:17,629 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-02-27T19:30:17,630 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-02-27T19:30:17,633 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-02-27T19:30:17,635 adding 'scarcc/data_analysis/plot/__init__.py' 2024-02-27T19:30:17,636 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-02-27T19:30:17,637 adding 'scarcc/data_analysis/plot/kde.py' 2024-02-27T19:30:17,639 adding 'scarcc/data_analysis/plot/legend.py' 2024-02-27T19:30:17,640 adding 'scarcc/data_analysis/plot/scatter.py' 2024-02-27T19:30:17,642 adding 'scarcc/preparation/__init__.py' 2024-02-27T19:30:17,643 adding 'scarcc/preparation/find_directory.py' 2024-02-27T19:30:17,645 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-02-27T19:30:17,646 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-02-27T19:30:17,648 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-02-27T19:30:17,649 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-02-27T19:30:17,651 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-02-27T19:30:17,652 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-02-27T19:30:17,654 adding 'scarcc/preparation/perturbation/__init__.py' 2024-02-27T19:30:17,655 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-02-27T19:30:17,657 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-02-27T19:30:17,659 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-02-27T19:30:17,662 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-02-27T19:30:17,663 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-02-27T19:30:17,665 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-02-27T19:30:17,666 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-02-27T19:30:17,668 adding 'scarcc/preparation/target_gene/__init__.py' 2024-02-27T19:30:17,669 adding 'scarcc/preparation/target_gene/process_double_gene.py' 2024-02-27T19:30:17,671 adding 'scarcc/sim_engine/__init__.py' 2024-02-27T19:30:17,672 adding 'scarcc/sim_engine/result_processing.py' 2024-02-27T19:30:17,674 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-02-27T19:30:17,676 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-02-27T19:30:17,677 adding 'scarcc/sim_engine/data_processing/__init__.py' 2024-02-27T19:30:17,679 adding 'scarcc/sim_engine/data_processing/preprocess_flux.py' 2024-02-27T19:30:17,680 adding 'scarcc/util/__init__.py' 2024-02-27T19:30:17,682 adding 'scarcc/util/util.py' 2024-02-27T19:30:17,684 adding 'scarcc-0.0.10.dist-info/LICENSE' 2024-02-27T19:30:17,685 adding 'scarcc-0.0.10.dist-info/METADATA' 2024-02-27T19:30:17,686 adding 'scarcc-0.0.10.dist-info/WHEEL' 2024-02-27T19:30:17,687 adding 'scarcc-0.0.10.dist-info/top_level.txt' 2024-02-27T19:30:17,688 adding 'scarcc-0.0.10.dist-info/RECORD' 2024-02-27T19:30:17,690 removing build/bdist.linux-armv7l/wheel 2024-02-27T19:30:17,795 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-02-27T19:30:17,800 Created wheel for scarcc: filename=scarcc-0.0.10-py3-none-any.whl size=52130 sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 2024-02-27T19:30:17,801 Stored in directory: /tmp/pip-ephem-wheel-cache-_4mtwytv/wheels/b8/e6/68/3639250e90746e2e7564cb0fbe7bf27189afbb2d1296c0899a 2024-02-27T19:30:17,812 Successfully built scarcc 2024-02-27T19:30:17,817 Removed build tracker: '/tmp/pip-build-tracker-w1ed25sa'