2024-02-28T07:58:24,662 Created temporary directory: /tmp/pip-build-tracker-mp84h77w 2024-02-28T07:58:24,664 Initialized build tracking at /tmp/pip-build-tracker-mp84h77w 2024-02-28T07:58:24,664 Created build tracker: /tmp/pip-build-tracker-mp84h77w 2024-02-28T07:58:24,665 Entered build tracker: /tmp/pip-build-tracker-mp84h77w 2024-02-28T07:58:24,666 Created temporary directory: /tmp/pip-wheel-qk6zval9 2024-02-28T07:58:24,669 Created temporary directory: /tmp/pip-ephem-wheel-cache-zfj6k1zt 2024-02-28T07:58:24,695 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T07:58:24,699 2 location(s) to search for versions of pgenlib: 2024-02-28T07:58:24,699 * https://pypi.org/simple/pgenlib/ 2024-02-28T07:58:24,699 * https://www.piwheels.org/simple/pgenlib/ 2024-02-28T07:58:24,700 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2024-02-28T07:58:24,700 Getting page https://pypi.org/simple/pgenlib/ 2024-02-28T07:58:24,702 Found index url https://pypi.org/simple/ 2024-02-28T07:58:24,916 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2024-02-28T07:58:24,928 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2024-02-28T07:58:24,929 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,930 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2024-02-28T07:58:24,931 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2024-02-28T07:58:24,932 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2024-02-28T07:58:24,933 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,933 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,934 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,935 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,935 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,936 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,936 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,937 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,938 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,939 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2024-02-28T07:58:24,939 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,940 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,940 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,941 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,941 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,942 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,943 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,943 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,944 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,945 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,946 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2024-02-28T07:58:24,947 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,947 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,948 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,948 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,949 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/4b/62/3d03109e3a79b4981cde01c00f7d63b2f850599d3b4c06125e0561b0dbd7/Pgenlib-0.90.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,949 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7f/75/03cbd46f9f1cb21c22745c4548f85b5e548b1e5a5cbb4d69064f111c3f77/Pgenlib-0.90.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,950 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/da/25/eef614e9ea13964aed3aa93211d44fc0a53591fe59901def7f0842c26259/Pgenlib-0.90.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,950 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,951 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,952 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,953 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2024-02-28T07:58:24,953 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,954 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,955 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/00/66/4764ab01efa2952b57457324007f5f821ac124a234bb1bd24ff0e6e80df6/Pgenlib-0.90.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,955 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f5/16/3f9fce33a062ed8b6b35aa85517fd291e43636172d1e4a72dacb8538799e/Pgenlib-0.90.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,956 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/67/f3/b823df42f317a6bc4212095457d451a03c7dba99b55440d3ffeaf3ca4626/Pgenlib-0.90.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,956 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/6d/db7f7f9acb0dd3c0a39055738727a047371595a3c79f13c29e77b633eb72/Pgenlib-0.90.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,957 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e3/84/c69234c8f522d7d67459ad1288fb516a39f588dcab297b29a619ee3f340b/Pgenlib-0.90.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,957 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/82/44/df286e42696ea0bf1f817e5a7a924f268ee25d4644c654f4b89f14375705/Pgenlib-0.90.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,958 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c3/c3/30647c9cbafe729c786891bb3c873535bf8d667fb6b218642ada95738517/Pgenlib-0.90.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,959 Found link https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.1 2024-02-28T07:58:24,959 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0c/80/d561e55243fd241b2a62e6a53c4ce417fbd45262eb88deddd4ca0919d59b/Pgenlib-0.90.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,960 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/14/69/69b3665864ef6393949d8cdf702e4d8404ae316c6d549f73eb83e6e7577b/Pgenlib-0.90.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,961 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/20/84/7a2c2509d2f998d92884c4dd68b2003eafe11cafa45728cdbbb2c19ef89e/Pgenlib-0.90.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,961 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e7/ed/79bb17524d472dc9538acca2c02c7048a74134606b22b35b22274b572acd/Pgenlib-0.90.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,962 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a8/33/d2a53933f482f12f67c6b0b3a4cc23db48452c10ed66f5508c69a4ea256f/Pgenlib-0.90.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,963 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/dd/43/4ba76d0de21abf47f3f01ddd48d0c75fb69b7c341af63ce0501c81eeee11/Pgenlib-0.90.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,963 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/89/8a/0923185576ae4c3e2fd78f3f409f0ad88c64386f0d5805343d56dc9915a4/Pgenlib-0.90.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,964 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/87/bd/4fa502ecdd6b567344b45d95a23646200aa29f37aca0aa1ec1964d63c266/Pgenlib-0.90.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,964 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/8d/fb/778474f5bf817493b7045c6b1683f35e93a86920c7c6f3f33465f09a874e/Pgenlib-0.90.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:24,965 Found link https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.2 2024-02-28T07:58:24,966 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2024-02-28T07:58:24,967 Getting page https://www.piwheels.org/simple/pgenlib/ 2024-02-28T07:58:24,968 Found index url https://www.piwheels.org/simple/ 2024-02-28T07:58:25,161 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2024-02-28T07:58:25,168 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv6l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,168 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,169 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv6l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,170 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,170 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv6l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,171 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv7l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,172 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv6l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,172 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv7l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,173 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp311-cp311-linux_armv6l.whl#sha256=fcca7b23c797befa1d51e949b32db523dfb431d5ac126d684d49ec454cb49180 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,173 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp311-cp311-linux_armv7l.whl#sha256=fcca7b23c797befa1d51e949b32db523dfb431d5ac126d684d49ec454cb49180 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,174 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv6l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,174 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv7l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,175 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp311-cp311-linux_armv6l.whl#sha256=4da917a14038914fca7ee7cc073bbfac5f01312f9102fdb7bbd34291a05dca32 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,175 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp311-cp311-linux_armv7l.whl#sha256=4da917a14038914fca7ee7cc073bbfac5f01312f9102fdb7bbd34291a05dca32 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,176 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv6l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,177 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv7l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,177 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv6l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,178 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv7l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,179 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,179 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv7l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,180 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,181 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T07:58:25,181 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2024-02-28T07:58:25,182 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2024-02-28T07:58:25,201 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2024-02-28T07:58:25,219 Collecting pgenlib==0.90.2 2024-02-28T07:58:25,221 Created temporary directory: /tmp/pip-unpack-uwa90wa4 2024-02-28T07:58:25,440 Downloading Pgenlib-0.90.2.tar.gz (1.4 MB) 2024-02-28T07:58:26,519 Added pgenlib==0.90.2 from https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz to build tracker '/tmp/pip-build-tracker-mp84h77w' 2024-02-28T07:58:26,525 Created temporary directory: /tmp/pip-build-env-0kspppc0 2024-02-28T07:58:26,530 Installing build dependencies: started 2024-02-28T07:58:26,531 Running command pip subprocess to install build dependencies 2024-02-28T07:58:27,666 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-28T07:58:28,205 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T07:58:29,908 Collecting setuptools 2024-02-28T07:58:29,923 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB) 2024-02-28T07:58:30,562 Collecting wheel 2024-02-28T07:58:30,576 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-28T07:58:30,741 Collecting oldest-supported-numpy>=2022.8.16 2024-02-28T07:58:30,774 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.12.21-py3-none-any.whl (4.9 kB) 2024-02-28T07:58:31,993 Collecting Cython>=0.29.21 2024-02-28T07:58:32,013 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.8-cp311-cp311-linux_armv7l.whl (11.7 MB) 2024-02-28T07:58:33,299 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-02-28T07:58:33,303 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-02-28T07:58:33,306 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-02-28T07:58:33,310 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-02-28T07:58:33,313 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-02-28T07:58:33,598 Collecting numpy==1.23.2 (from oldest-supported-numpy>=2022.8.16) 2024-02-28T07:58:33,616 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.2-cp311-cp311-linux_armv7l.whl (12.4 MB) 2024-02-28T07:58:36,577 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2024-02-28T07:58:36,799 Creating /tmp/pip-build-env-0kspppc0/overlay/local/bin 2024-02-28T07:58:36,801 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/wheel to 755 2024-02-28T07:58:47,618 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/f2py to 755 2024-02-28T07:58:47,620 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/f2py3 to 755 2024-02-28T07:58:47,622 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/f2py3.11 to 755 2024-02-28T07:58:51,156 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/cygdb to 755 2024-02-28T07:58:51,159 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/cython to 755 2024-02-28T07:58:51,161 changing mode of /tmp/pip-build-env-0kspppc0/overlay/local/bin/cythonize to 755 2024-02-28T07:58:51,218 Successfully installed Cython-3.0.8 numpy-1.23.2 oldest-supported-numpy-2023.12.21 setuptools-69.1.1 wheel-0.42.0 2024-02-28T07:58:51,548 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-28T07:58:51,548 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-28T07:58:51,982 Installing build dependencies: finished with status 'done' 2024-02-28T07:58:51,986 Getting requirements to build wheel: started 2024-02-28T07:58:51,987 Running command Getting requirements to build wheel 2024-02-28T07:58:57,689 Compiling src/pgenlib/pgenlib.pyx because it depends on /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2024-02-28T07:58:57,690 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2024-02-28T07:58:57,755 running egg_info 2024-02-28T07:58:57,763 writing src/Pgenlib.egg-info/PKG-INFO 2024-02-28T07:58:57,767 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2024-02-28T07:58:57,769 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2024-02-28T07:58:57,798 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:57,799 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:57,800 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:57,800 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:57,801 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:57,820 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T07:58:57,853 reading manifest template 'MANIFEST.in' 2024-02-28T07:58:57,873 adding license file 'LICENSE' 2024-02-28T07:58:57,886 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T07:58:58,343 Getting requirements to build wheel: finished with status 'done' 2024-02-28T07:58:58,353 Created temporary directory: /tmp/pip-modern-metadata-d9dkzdzv 2024-02-28T07:58:58,356 Preparing metadata (pyproject.toml): started 2024-02-28T07:58:58,357 Running command Preparing metadata (pyproject.toml) 2024-02-28T07:58:59,852 running dist_info 2024-02-28T07:58:59,874 creating /tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info 2024-02-28T07:58:59,879 writing /tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info/PKG-INFO 2024-02-28T07:58:59,882 writing dependency_links to /tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info/dependency_links.txt 2024-02-28T07:58:59,884 writing top-level names to /tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info/top_level.txt 2024-02-28T07:58:59,886 writing manifest file '/tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T07:58:59,910 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:59,911 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:59,911 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:59,911 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:59,912 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T07:58:59,924 reading manifest file '/tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T07:58:59,926 reading manifest template 'MANIFEST.in' 2024-02-28T07:58:59,940 adding license file 'LICENSE' 2024-02-28T07:58:59,951 writing manifest file '/tmp/pip-modern-metadata-d9dkzdzv/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T07:58:59,952 creating '/tmp/pip-modern-metadata-d9dkzdzv/Pgenlib-0.90.2.dist-info' 2024-02-28T07:59:00,196 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-28T07:59:00,200 Source in /tmp/pip-wheel-qk6zval9/pgenlib_dc0e2d7f74374f289ae93ab19e4a21cb has version 0.90.2, which satisfies requirement pgenlib==0.90.2 from https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz 2024-02-28T07:59:00,202 Removed pgenlib==0.90.2 from https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz from build tracker '/tmp/pip-build-tracker-mp84h77w' 2024-02-28T07:59:00,207 Created temporary directory: /tmp/pip-unpack-tbw3nkuw 2024-02-28T07:59:00,208 Created temporary directory: /tmp/pip-unpack-uk04l9a8 2024-02-28T07:59:00,211 Building wheels for collected packages: pgenlib 2024-02-28T07:59:00,216 Created temporary directory: /tmp/pip-wheel-mq13bbod 2024-02-28T07:59:00,216 Destination directory: /tmp/pip-wheel-mq13bbod 2024-02-28T07:59:00,218 Building wheel for pgenlib (pyproject.toml): started 2024-02-28T07:59:00,220 Running command Building wheel for pgenlib (pyproject.toml) 2024-02-28T07:59:01,693 running bdist_wheel 2024-02-28T07:59:01,744 running build 2024-02-28T07:59:01,745 running build_clib 2024-02-28T07:59:01,754 building 'clib' library 2024-02-28T07:59:01,757 creating build 2024-02-28T07:59:01,758 creating build/temp.linux-armv7l-cpython-311 2024-02-28T07:59:01,759 creating build/temp.linux-armv7l-cpython-311/src 2024-02-28T07:59:01,760 creating build/temp.linux-armv7l-cpython-311/src/plink2 2024-02-28T07:59:01,761 creating build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate 2024-02-28T07:59:01,761 creating build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib 2024-02-28T07:59:01,763 creating build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/arm 2024-02-28T07:59:01,764 creating build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/x86 2024-02-28T07:59:01,765 creating build/temp.linux-armv7l-cpython-311/src/plink2/zstd 2024-02-28T07:59:01,765 creating build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib 2024-02-28T07:59:01,766 creating build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common 2024-02-28T07:59:01,767 creating build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress 2024-02-28T07:59:01,768 creating build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress 2024-02-28T07:59:01,769 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/adler32.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/adler32.o 2024-02-28T07:59:02,506 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/arm/arm_cpu_features.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/arm/arm_cpu_features.o 2024-02-28T07:59:02,612 src/plink2/libdeflate/lib/arm/arm_cpu_features.c: In function ‘scan_auxv’: 2024-02-28T07:59:02,613 src/plink2/libdeflate/lib/arm/arm_cpu_features.c:83:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-02-28T07:59:02,613 83 | } while (filled < 2 * sizeof(long)); 2024-02-28T07:59:02,614 | ^ 2024-02-28T07:59:02,614 src/plink2/libdeflate/lib/arm/arm_cpu_features.c:96:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-02-28T07:59:02,615 96 | } while (filled >= 2 * sizeof(long)); 2024-02-28T07:59:02,616 | ^~ 2024-02-28T07:59:02,709 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/crc32.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/crc32.o 2024-02-28T07:59:04,216 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/deflate_compress.o 2024-02-28T07:59:11,171 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_decompress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/deflate_decompress.o 2024-02-28T07:59:12,229 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/gzip_compress.o 2024-02-28T07:59:12,359 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_decompress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/gzip_decompress.o 2024-02-28T07:59:12,529 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/utils.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/utils.o 2024-02-28T07:59:12,668 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/x86/x86_cpu_features.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/x86/x86_cpu_features.o 2024-02-28T07:59:12,752 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/zlib_compress.o 2024-02-28T07:59:12,883 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_decompress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/zlib_decompress.o 2024-02-28T07:59:13,028 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/debug.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/debug.o 2024-02-28T07:59:13,084 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/entropy_common.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/entropy_common.o 2024-02-28T07:59:13,525 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/error_private.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/error_private.o 2024-02-28T07:59:13,638 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/fse_decompress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/fse_decompress.o 2024-02-28T07:59:14,643 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/pool.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/pool.o 2024-02-28T07:59:14,815 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/threading.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/threading.o 2024-02-28T07:59:14,871 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/xxhash.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/xxhash.o 2024-02-28T07:59:15,977 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/zstd_common.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/zstd_common.o 2024-02-28T07:59:16,184 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/fse_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/fse_compress.o 2024-02-28T07:59:17,110 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/hist.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/hist.o 2024-02-28T07:59:17,414 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/huf_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/huf_compress.o 2024-02-28T07:59:19,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress.o 2024-02-28T07:59:27,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_literals.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress_literals.o 2024-02-28T07:59:27,388 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_sequences.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress_sequences.o 2024-02-28T07:59:28,095 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_superblock.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress_superblock.o 2024-02-28T07:59:28,869 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_double_fast.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_double_fast.o 2024-02-28T07:59:37,036 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_fast.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_fast.o 2024-02-28T07:59:44,954 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_lazy.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_lazy.o 2024-02-28T08:00:19,836 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_ldm.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_ldm.o 2024-02-28T08:00:21,216 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_opt.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_opt.o 2024-02-28T08:00:28,664 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstdmt_compress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstdmt_compress.o 2024-02-28T08:00:30,424 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/huf_decompress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/huf_decompress.o 2024-02-28T08:00:34,290 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_ddict.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/zstd_ddict.o 2024-02-28T08:00:34,678 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/zstd_decompress.o 2024-02-28T08:00:36,983 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress_block.c -o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2024-02-28T08:00:43,664 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-311/libclib.a build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/adler32.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/arm/arm_cpu_features.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/crc32.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/deflate_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/deflate_decompress.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/gzip_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/gzip_decompress.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/utils.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/x86/x86_cpu_features.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/zlib_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/libdeflate/lib/zlib_decompress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/debug.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/entropy_common.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/error_private.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/fse_decompress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/pool.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/threading.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/xxhash.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/common/zstd_common.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/fse_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/hist.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/huf_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress_literals.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress_sequences.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_compress_superblock.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_double_fast.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_fast.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_lazy.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_ldm.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstd_opt.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/compress/zstdmt_compress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/huf_decompress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/zstd_ddict.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/zstd_decompress.o build/temp.linux-armv7l-cpython-311/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2024-02-28T08:00:43,904 running build_ext 2024-02-28T08:00:43,907 building 'pgenlib' extension 2024-02-28T08:00:43,908 creating build/temp.linux-armv7l-cpython-311/src/pgenlib 2024-02-28T08:00:43,909 creating build/temp.linux-armv7l-cpython-311/src/plink2/include 2024-02-28T08:00:43,910 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:00:44,192 In file included from /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2024-02-28T08:00:44,193 from /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-02-28T08:00:44,193 from /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2024-02-28T08:00:44,194 from src/pgenlib/pgenlib.cpp:1258: 2024-02-28T08:00:44,195 /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-02-28T08:00:44,195 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-02-28T08:00:44,196 | ^~~~~~~ 2024-02-28T08:00:44,263 src/pgenlib/pgenlib.cpp:1514: warning: "likely" redefined 2024-02-28T08:00:44,264 1514 | #define likely(x) __builtin_expect(!!(x), 1) 2024-02-28T08:00:44,265 | 2024-02-28T08:00:44,265 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2024-02-28T08:00:44,266 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2024-02-28T08:00:44,267 from src/pgenlib/pgenlib.cpp:1263: 2024-02-28T08:00:44,267 src/pgenlib/../plink2/include/plink2_base.h:274: note: this is the location of the previous definition 2024-02-28T08:00:44,268 274 | # define likely(expr) __builtin_expect(!!(expr), 1) 2024-02-28T08:00:44,268 | 2024-02-28T08:00:44,269 src/pgenlib/pgenlib.cpp:1515: warning: "unlikely" redefined 2024-02-28T08:00:44,270 1515 | #define unlikely(x) __builtin_expect(!!(x), 0) 2024-02-28T08:00:44,270 | 2024-02-28T08:00:44,271 src/pgenlib/../plink2/include/plink2_base.h:275: note: this is the location of the previous definition 2024-02-28T08:00:44,271 275 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2024-02-28T08:00:44,272 | 2024-02-28T08:00:45,513 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PvarReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-02-28T08:00:45,513 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,514 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,514 | ^ 2024-02-28T08:00:45,515 src/pgenlib/pgenlib.cpp:7051:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,515 7051 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,516 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,550 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_7get_variant_id(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,551 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,551 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,552 | ^ 2024-02-28T08:00:45,552 src/pgenlib/pgenlib.cpp:7822:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,553 7822 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,553 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,570 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_9get_allele_ct(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,571 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,572 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,572 | ^ 2024-02-28T08:00:45,573 src/pgenlib/pgenlib.cpp:8178:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,574 8178 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,574 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,596 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_11get_allele_code(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,597 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,597 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,598 | ^ 2024-02-28T08:00:45,598 src/pgenlib/pgenlib.cpp:8634:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,599 8634 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,599 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,600 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,601 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,601 | ^ 2024-02-28T08:00:45,602 src/pgenlib/pgenlib.cpp:8636:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,602 8636 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,603 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,604 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,605 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,606 | ^ 2024-02-28T08:00:45,607 src/pgenlib/pgenlib.cpp:8649:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,607 8649 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,607 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,657 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_19__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,658 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,658 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,659 | ^ 2024-02-28T08:00:45,659 src/pgenlib/pgenlib.cpp:9673:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,659 9673 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,660 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,661 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,661 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,662 | ^ 2024-02-28T08:00:45,662 src/pgenlib/pgenlib.cpp:9675:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,663 9675 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,663 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,664 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,665 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,665 | ^ 2024-02-28T08:00:45,666 src/pgenlib/pgenlib.cpp:9677:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,667 9677 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,667 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,669 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,670 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,670 | ^ 2024-02-28T08:00:45,671 src/pgenlib/pgenlib.cpp:9690:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,671 9690 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,672 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,674 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,674 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,675 | ^ 2024-02-28T08:00:45,676 src/pgenlib/pgenlib.cpp:9700:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,676 9700 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,677 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,686 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_25__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,686 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,687 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,688 | ^ 2024-02-28T08:00:45,689 src/pgenlib/pgenlib.cpp:9962:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,689 9962 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,690 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,718 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-02-28T08:00:45,719 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,719 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,720 | ^ 2024-02-28T08:00:45,720 src/pgenlib/pgenlib.cpp:10706:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,720 10706 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,721 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,722 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,722 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,723 | ^ 2024-02-28T08:00:45,723 src/pgenlib/pgenlib.cpp:10708:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,724 10708 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,724 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,726 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,726 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,727 | ^ 2024-02-28T08:00:45,727 src/pgenlib/pgenlib.cpp:10710:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,728 10710 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,729 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,729 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,730 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,731 | ^ 2024-02-28T08:00:45,731 src/pgenlib/pgenlib.cpp:10712:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,732 10712 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,732 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,733 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,734 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,735 | ^ 2024-02-28T08:00:45,735 src/pgenlib/pgenlib.cpp:10714:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,736 10714 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,736 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,737 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,737 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,738 | ^ 2024-02-28T08:00:45,739 src/pgenlib/pgenlib.cpp:10716:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,739 10716 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,740 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,742 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,742 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,743 | ^ 2024-02-28T08:00:45,744 src/pgenlib/pgenlib.cpp:10729:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,745 10729 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,745 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,746 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,747 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,747 | ^ 2024-02-28T08:00:45,748 src/pgenlib/pgenlib.cpp:10736:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,748 10736 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,749 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,751 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,751 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,752 | ^ 2024-02-28T08:00:45,752 src/pgenlib/pgenlib.cpp:10743:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,753 10743 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,753 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,755 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,756 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,757 | ^ 2024-02-28T08:00:45,757 src/pgenlib/pgenlib.cpp:10750:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,758 10750 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,758 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,760 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,761 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,762 | ^ 2024-02-28T08:00:45,762 src/pgenlib/pgenlib.cpp:10757:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,763 10757 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,764 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,766 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,766 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,767 | ^ 2024-02-28T08:00:45,768 src/pgenlib/pgenlib.cpp:10772:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,768 10772 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,769 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,770 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,770 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,771 | ^ 2024-02-28T08:00:45,771 src/pgenlib/pgenlib.cpp:10774:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,772 10774 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,772 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,773 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,774 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,775 | ^ 2024-02-28T08:00:45,775 src/pgenlib/pgenlib.cpp:10776:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,776 10776 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,777 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,777 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,778 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,778 | ^ 2024-02-28T08:00:45,778 src/pgenlib/pgenlib.cpp:10778:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,779 10778 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,779 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,781 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,781 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,782 | ^ 2024-02-28T08:00:45,782 src/pgenlib/pgenlib.cpp:10780:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,783 10780 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,783 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,857 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2024-02-28T08:00:45,858 src/pgenlib/pgenlib.cpp:13140:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:45,858 13140 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2024-02-28T08:00:45,859 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,882 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_11read(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,882 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,883 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,884 | ^ 2024-02-28T08:00:45,884 src/pgenlib/pgenlib.cpp:13495:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,885 13495 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,885 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,886 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,887 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,888 | ^ 2024-02-28T08:00:45,888 src/pgenlib/pgenlib.cpp:13497:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,889 13497 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,889 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,890 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,890 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,891 | ^ 2024-02-28T08:00:45,892 src/pgenlib/pgenlib.cpp:13499:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,892 13499 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,893 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,894 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,895 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,896 | ^ 2024-02-28T08:00:45,896 src/pgenlib/pgenlib.cpp:13512:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,897 13512 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,897 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,899 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,899 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,900 | ^ 2024-02-28T08:00:45,900 src/pgenlib/pgenlib.cpp:13522:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,901 13522 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,901 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,904 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,905 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,905 | ^ 2024-02-28T08:00:45,906 src/pgenlib/pgenlib.cpp:13537:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,906 13537 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,907 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,923 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2024-02-28T08:00:45,923 src/pgenlib/pgenlib.cpp:13826:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:45,924 13826 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2024-02-28T08:00:45,924 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,945 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_13read_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:45,945 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,946 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,946 | ^ 2024-02-28T08:00:45,947 src/pgenlib/pgenlib.cpp:14121:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,948 14121 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,948 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,949 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,949 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,950 | ^ 2024-02-28T08:00:45,950 src/pgenlib/pgenlib.cpp:14123:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,951 14123 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,951 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,952 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,953 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,954 | ^ 2024-02-28T08:00:45,954 src/pgenlib/pgenlib.cpp:14125:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,955 14125 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,956 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,958 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,958 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,959 | ^ 2024-02-28T08:00:45,960 src/pgenlib/pgenlib.cpp:14138:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,960 14138 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,961 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,963 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,963 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,964 | ^ 2024-02-28T08:00:45,964 src/pgenlib/pgenlib.cpp:14148:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,965 14148 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,965 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,968 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:45,969 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:45,970 | ^ 2024-02-28T08:00:45,970 src/pgenlib/pgenlib.cpp:14163:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:45,971 14163 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:45,971 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:45,986 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2024-02-28T08:00:45,987 src/pgenlib/pgenlib.cpp:14418:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:45,988 14418 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2024-02-28T08:00:45,988 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,002 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_15read_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,003 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,003 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,004 | ^ 2024-02-28T08:00:46,004 src/pgenlib/pgenlib.cpp:14632:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,005 14632 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,005 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,006 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,007 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,007 | ^ 2024-02-28T08:00:46,008 src/pgenlib/pgenlib.cpp:14634:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,009 14634 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,009 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,011 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,012 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,013 | ^ 2024-02-28T08:00:46,014 src/pgenlib/pgenlib.cpp:14647:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,014 14647 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,015 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,033 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2024-02-28T08:00:46,033 src/pgenlib/pgenlib.cpp:14940:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,034 14940 | __pyx_t_7 = ((__pyx_t_9[0]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,034 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,039 src/pgenlib/pgenlib.cpp:14998:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,040 14998 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,041 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,057 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_17read_alleles_and_phasepresent(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,057 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,058 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,058 | ^ 2024-02-28T08:00:46,059 src/pgenlib/pgenlib.cpp:15234:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,059 15234 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,060 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,061 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,062 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,062 | ^ 2024-02-28T08:00:46,063 src/pgenlib/pgenlib.cpp:15236:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,063 15236 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,064 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,065 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,066 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,067 | ^ 2024-02-28T08:00:46,067 src/pgenlib/pgenlib.cpp:15238:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,068 15238 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,069 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,070 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,071 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,072 | ^ 2024-02-28T08:00:46,072 src/pgenlib/pgenlib.cpp:15251:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,073 15251 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,074 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,076 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,077 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,077 | ^ 2024-02-28T08:00:46,078 src/pgenlib/pgenlib.cpp:15261:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,079 15261 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,080 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,092 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2024-02-28T08:00:46,093 src/pgenlib/pgenlib.cpp:15541:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,093 15541 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,094 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,099 src/pgenlib/pgenlib.cpp:15599:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,100 15599 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,100 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,114 src/pgenlib/pgenlib.cpp:15826:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,114 15826 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,115 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,121 src/pgenlib/pgenlib.cpp:15884:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,121 15884 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,122 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,141 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2024-02-28T08:00:46,142 src/pgenlib/pgenlib.cpp:16486:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,143 16486 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,143 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,148 src/pgenlib/pgenlib.cpp:16544:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,149 16544 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,150 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,163 src/pgenlib/pgenlib.cpp:16771:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,163 16771 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,164 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,169 src/pgenlib/pgenlib.cpp:16829:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,170 16829 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,171 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,190 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2024-02-28T08:00:46,191 src/pgenlib/pgenlib.cpp:17431:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,192 17431 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,192 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,197 src/pgenlib/pgenlib.cpp:17489:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,198 17489 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,198 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,211 src/pgenlib/pgenlib.cpp:17716:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,212 17716 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,212 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,218 src/pgenlib/pgenlib.cpp:17774:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,218 17774 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,219 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,259 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_19read_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,260 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,261 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,261 | ^ 2024-02-28T08:00:46,262 src/pgenlib/pgenlib.cpp:18617:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,262 18617 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,262 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,264 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,265 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,265 | ^ 2024-02-28T08:00:46,266 src/pgenlib/pgenlib.cpp:18619:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,266 18619 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,266 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,268 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,269 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,269 | ^ 2024-02-28T08:00:46,270 src/pgenlib/pgenlib.cpp:18621:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,270 18621 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,271 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,272 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,273 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,274 | ^ 2024-02-28T08:00:46,274 src/pgenlib/pgenlib.cpp:18623:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,275 18623 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,275 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,277 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,277 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,278 | ^ 2024-02-28T08:00:46,278 src/pgenlib/pgenlib.cpp:18625:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,279 18625 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,279 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,282 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,283 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,283 | ^ 2024-02-28T08:00:46,284 src/pgenlib/pgenlib.cpp:18638:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,284 18638 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,285 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,288 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,289 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,289 | ^ 2024-02-28T08:00:46,290 src/pgenlib/pgenlib.cpp:18648:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,290 18648 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,291 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,294 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,294 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,295 | ^ 2024-02-28T08:00:46,295 src/pgenlib/pgenlib.cpp:18658:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,296 18658 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,296 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,299 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,299 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,300 | ^ 2024-02-28T08:00:46,301 src/pgenlib/pgenlib.cpp:18665:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,301 18665 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,302 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,305 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,306 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,306 | ^ 2024-02-28T08:00:46,307 src/pgenlib/pgenlib.cpp:18680:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,307 18680 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,308 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,309 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,310 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,311 | ^ 2024-02-28T08:00:46,311 src/pgenlib/pgenlib.cpp:18682:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,312 18682 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,312 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,323 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2024-02-28T08:00:46,324 src/pgenlib/pgenlib.cpp:18951:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,325 18951 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,326 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,331 src/pgenlib/pgenlib.cpp:19009:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,332 19009 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,332 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,350 src/pgenlib/pgenlib.cpp:19252:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,350 19252 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,351 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,356 src/pgenlib/pgenlib.cpp:19310:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,357 19310 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,358 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,384 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2024-02-28T08:00:46,385 src/pgenlib/pgenlib.cpp:20009:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,385 20009 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,386 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,391 src/pgenlib/pgenlib.cpp:20067:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,392 20067 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,392 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,406 src/pgenlib/pgenlib.cpp:20310:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,406 20310 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,407 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,413 src/pgenlib/pgenlib.cpp:20368:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,413 20368 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,414 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,440 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2024-02-28T08:00:46,441 src/pgenlib/pgenlib.cpp:21067:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,442 21067 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,443 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,447 src/pgenlib/pgenlib.cpp:21125:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,448 21125 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,448 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,462 src/pgenlib/pgenlib.cpp:21368:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,463 21368 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2024-02-28T08:00:46,463 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,469 src/pgenlib/pgenlib.cpp:21426:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,469 21426 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,470 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,513 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_21read_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,514 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,514 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,515 | ^ 2024-02-28T08:00:46,515 src/pgenlib/pgenlib.cpp:22296:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,516 22296 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,516 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,518 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,519 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,519 | ^ 2024-02-28T08:00:46,520 src/pgenlib/pgenlib.cpp:22298:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,521 22298 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,521 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,523 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,524 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,524 | ^ 2024-02-28T08:00:46,525 src/pgenlib/pgenlib.cpp:22300:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,525 22300 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,526 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,528 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,528 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,529 | ^ 2024-02-28T08:00:46,530 src/pgenlib/pgenlib.cpp:22302:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,530 22302 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,531 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,534 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,534 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,535 | ^ 2024-02-28T08:00:46,536 src/pgenlib/pgenlib.cpp:22315:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,536 22315 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,537 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,540 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,541 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,541 | ^ 2024-02-28T08:00:46,542 src/pgenlib/pgenlib.cpp:22325:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,542 22325 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,543 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,546 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,546 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,547 | ^ 2024-02-28T08:00:46,547 src/pgenlib/pgenlib.cpp:22332:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,548 22332 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,549 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,553 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,553 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,554 | ^ 2024-02-28T08:00:46,554 src/pgenlib/pgenlib.cpp:22347:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,555 22347 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,555 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,557 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,558 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,559 | ^ 2024-02-28T08:00:46,560 src/pgenlib/pgenlib.cpp:22349:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,560 22349 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,561 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,580 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2024-02-28T08:00:46,581 src/pgenlib/pgenlib.cpp:22769:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,582 22769 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,582 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,588 src/pgenlib/pgenlib.cpp:22827:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,588 22827 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,589 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,604 src/pgenlib/pgenlib.cpp:23066:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,604 23066 | __pyx_t_9 = ((__pyx_t_14[0]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,605 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,611 src/pgenlib/pgenlib.cpp:23124:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,612 23124 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,612 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,640 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_23read_alleles_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,641 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,641 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,642 | ^ 2024-02-28T08:00:46,642 src/pgenlib/pgenlib.cpp:23850:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,642 23850 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,643 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,645 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,646 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,646 | ^ 2024-02-28T08:00:46,647 src/pgenlib/pgenlib.cpp:23852:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,647 23852 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,648 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,650 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,651 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,652 | ^ 2024-02-28T08:00:46,652 src/pgenlib/pgenlib.cpp:23854:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,652 23854 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,653 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,655 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,656 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,657 | ^ 2024-02-28T08:00:46,657 src/pgenlib/pgenlib.cpp:23856:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,658 23856 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,658 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,662 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,663 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,663 | ^ 2024-02-28T08:00:46,664 src/pgenlib/pgenlib.cpp:23869:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,664 23869 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,665 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,668 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,669 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,670 | ^ 2024-02-28T08:00:46,670 src/pgenlib/pgenlib.cpp:23879:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,671 23879 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,672 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,675 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,676 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,676 | ^ 2024-02-28T08:00:46,677 src/pgenlib/pgenlib.cpp:23889:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,677 23889 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,678 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,682 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,683 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,683 | ^ 2024-02-28T08:00:46,684 src/pgenlib/pgenlib.cpp:23904:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,684 23904 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,685 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,701 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2024-02-28T08:00:46,702 src/pgenlib/pgenlib.cpp:24278:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,702 24278 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,703 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,708 src/pgenlib/pgenlib.cpp:24336:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,709 24336 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,709 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,724 src/pgenlib/pgenlib.cpp:24579:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,724 24579 | __pyx_t_12 = ((__pyx_t_11[0]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,725 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,731 src/pgenlib/pgenlib.cpp:24637:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,731 24637 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,732 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,763 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_25read_alleles_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,763 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,764 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,764 | ^ 2024-02-28T08:00:46,765 src/pgenlib/pgenlib.cpp:25404:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,766 25404 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,766 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,768 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,769 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,770 | ^ 2024-02-28T08:00:46,770 src/pgenlib/pgenlib.cpp:25406:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,771 25406 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,771 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,774 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,774 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,775 | ^ 2024-02-28T08:00:46,775 src/pgenlib/pgenlib.cpp:25408:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,776 25408 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,776 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,780 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,781 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,781 | ^ 2024-02-28T08:00:46,782 src/pgenlib/pgenlib.cpp:25421:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,783 25421 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,783 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,787 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,788 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,788 | ^ 2024-02-28T08:00:46,789 src/pgenlib/pgenlib.cpp:25431:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,789 25431 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,790 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,794 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,795 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,796 | ^ 2024-02-28T08:00:46,796 src/pgenlib/pgenlib.cpp:25446:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,797 25446 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,797 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,818 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2024-02-28T08:00:46,819 src/pgenlib/pgenlib.cpp:25821:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,820 25821 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,820 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,826 src/pgenlib/pgenlib.cpp:25879:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,826 25879 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,827 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,832 src/pgenlib/pgenlib.cpp:25937:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,833 25937 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,834 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,839 src/pgenlib/pgenlib.cpp:25995:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,840 25995 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,841 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,863 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_27read_alleles_and_phasepresent_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,864 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,865 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,865 | ^ 2024-02-28T08:00:46,865 src/pgenlib/pgenlib.cpp:26286:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,866 26286 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,866 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,869 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,870 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,870 | ^ 2024-02-28T08:00:46,870 src/pgenlib/pgenlib.cpp:26288:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,871 26288 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,871 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,874 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,875 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,875 | ^ 2024-02-28T08:00:46,876 src/pgenlib/pgenlib.cpp:26290:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,876 26290 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,877 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,879 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,880 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,880 | ^ 2024-02-28T08:00:46,881 src/pgenlib/pgenlib.cpp:26292:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,881 26292 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,882 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,884 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,885 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,886 | ^ 2024-02-28T08:00:46,886 src/pgenlib/pgenlib.cpp:26294:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,887 26294 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,888 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,891 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,892 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,892 | ^ 2024-02-28T08:00:46,893 src/pgenlib/pgenlib.cpp:26307:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,894 26307 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,894 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,898 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,898 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,899 | ^ 2024-02-28T08:00:46,899 src/pgenlib/pgenlib.cpp:26317:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,900 26317 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,900 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,904 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,905 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,905 | ^ 2024-02-28T08:00:46,906 src/pgenlib/pgenlib.cpp:26327:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,906 26327 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,907 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,911 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,912 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,912 | ^ 2024-02-28T08:00:46,913 src/pgenlib/pgenlib.cpp:26337:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,914 26337 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,914 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,918 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,919 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,920 | ^ 2024-02-28T08:00:46,920 src/pgenlib/pgenlib.cpp:26352:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,921 26352 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,921 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,941 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2024-02-28T08:00:46,942 src/pgenlib/pgenlib.cpp:26724:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,943 26724 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,943 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,949 src/pgenlib/pgenlib.cpp:26782:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,949 26782 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:46,950 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,955 src/pgenlib/pgenlib.cpp:26840:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,956 26840 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T08:00:46,956 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,962 src/pgenlib/pgenlib.cpp:26898:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:46,963 26898 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_subset_size); 2024-02-28T08:00:46,963 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,990 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_29read_alleles_and_phasepresent_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:46,991 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,991 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,992 | ^ 2024-02-28T08:00:46,992 src/pgenlib/pgenlib.cpp:27248:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,992 27248 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,993 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:46,996 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:46,997 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:46,997 | ^ 2024-02-28T08:00:46,998 src/pgenlib/pgenlib.cpp:27250:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:46,998 27250 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:46,999 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,002 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,003 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,003 | ^ 2024-02-28T08:00:47,004 src/pgenlib/pgenlib.cpp:27252:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,004 27252 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,005 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,008 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,009 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,009 | ^ 2024-02-28T08:00:47,010 src/pgenlib/pgenlib.cpp:27254:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,010 27254 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,011 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,014 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,015 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,016 | ^ 2024-02-28T08:00:47,016 src/pgenlib/pgenlib.cpp:27267:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,017 27267 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,018 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,021 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,022 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,023 | ^ 2024-02-28T08:00:47,023 src/pgenlib/pgenlib.cpp:27277:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,024 27277 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,025 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,028 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,028 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,029 | ^ 2024-02-28T08:00:47,030 src/pgenlib/pgenlib.cpp:27287:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,030 27287 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,031 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,035 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,036 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,036 | ^ 2024-02-28T08:00:47,037 src/pgenlib/pgenlib.cpp:27302:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,037 27302 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,038 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,091 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_31read_dosages_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,092 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,092 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,093 | ^ 2024-02-28T08:00:47,093 src/pgenlib/pgenlib.cpp:28397:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,094 28397 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,094 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,097 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,098 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,098 | ^ 2024-02-28T08:00:47,099 src/pgenlib/pgenlib.cpp:28399:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,099 28399 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,100 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,102 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,103 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,104 | ^ 2024-02-28T08:00:47,104 src/pgenlib/pgenlib.cpp:28401:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,104 28401 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,105 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,108 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,109 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,109 | ^ 2024-02-28T08:00:47,110 src/pgenlib/pgenlib.cpp:28403:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,110 28403 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,111 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,114 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,114 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,115 | ^ 2024-02-28T08:00:47,116 src/pgenlib/pgenlib.cpp:28405:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,116 28405 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,117 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,120 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,121 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,122 | ^ 2024-02-28T08:00:47,122 src/pgenlib/pgenlib.cpp:28418:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,123 28418 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,123 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,125 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,125 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,126 | ^ 2024-02-28T08:00:47,126 src/pgenlib/pgenlib.cpp:28428:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,127 28428 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,127 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,130 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,131 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,131 | ^ 2024-02-28T08:00:47,132 src/pgenlib/pgenlib.cpp:28438:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,132 28438 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,133 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,134 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,135 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,135 | ^ 2024-02-28T08:00:47,136 src/pgenlib/pgenlib.cpp:28445:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,136 28445 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,137 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,139 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,140 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,141 | ^ 2024-02-28T08:00:47,141 src/pgenlib/pgenlib.cpp:28460:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,142 28460 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,142 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,143 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,144 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,145 | ^ 2024-02-28T08:00:47,145 src/pgenlib/pgenlib.cpp:28462:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,146 28462 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,146 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,156 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2024-02-28T08:00:47,156 src/pgenlib/pgenlib.cpp:28733:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:47,157 28733 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:47,158 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,162 src/pgenlib/pgenlib.cpp:28791:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:47,163 28791 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T08:00:47,163 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,184 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2024-02-28T08:00:47,185 src/pgenlib/pgenlib.cpp:29256:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:47,185 29256 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T08:00:47,186 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,190 src/pgenlib/pgenlib.cpp:29314:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T08:00:47,190 29314 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T08:00:47,191 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,227 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_33read_dosages_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,228 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,228 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,229 | ^ 2024-02-28T08:00:47,229 src/pgenlib/pgenlib.cpp:29902:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,230 29902 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,230 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,231 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,232 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,232 | ^ 2024-02-28T08:00:47,233 src/pgenlib/pgenlib.cpp:29904:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,233 29904 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,234 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,235 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,236 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,236 | ^ 2024-02-28T08:00:47,237 src/pgenlib/pgenlib.cpp:29906:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,237 29906 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,238 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,239 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,240 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,240 | ^ 2024-02-28T08:00:47,241 src/pgenlib/pgenlib.cpp:29908:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,241 29908 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,242 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,244 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,245 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,245 | ^ 2024-02-28T08:00:47,246 src/pgenlib/pgenlib.cpp:29921:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,246 29921 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,247 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,249 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,249 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,250 | ^ 2024-02-28T08:00:47,250 src/pgenlib/pgenlib.cpp:29931:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,251 29931 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,251 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,253 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,254 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,255 | ^ 2024-02-28T08:00:47,255 src/pgenlib/pgenlib.cpp:29938:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,256 29938 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,256 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,259 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,259 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,260 | ^ 2024-02-28T08:00:47,260 src/pgenlib/pgenlib.cpp:29953:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,261 29953 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,262 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,263 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,263 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,264 | ^ 2024-02-28T08:00:47,265 src/pgenlib/pgenlib.cpp:29955:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,265 29955 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,266 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,312 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_35count(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,312 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,313 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,313 | ^ 2024-02-28T08:00:47,314 src/pgenlib/pgenlib.cpp:31094:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,314 31094 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,315 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,316 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,316 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,317 | ^ 2024-02-28T08:00:47,318 src/pgenlib/pgenlib.cpp:31096:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,318 31096 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,319 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,320 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,321 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,322 | ^ 2024-02-28T08:00:47,322 src/pgenlib/pgenlib.cpp:31098:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,322 31098 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,323 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,325 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,326 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,327 | ^ 2024-02-28T08:00:47,327 src/pgenlib/pgenlib.cpp:31111:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,327 31111 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,328 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,331 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,331 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,332 | ^ 2024-02-28T08:00:47,332 src/pgenlib/pgenlib.cpp:31121:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,333 31121 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,333 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,337 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,337 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,338 | ^ 2024-02-28T08:00:47,339 src/pgenlib/pgenlib.cpp:31136:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,339 31136 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,340 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,355 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_37change_sample_subset(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,356 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,357 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,357 | ^ 2024-02-28T08:00:47,358 src/pgenlib/pgenlib.cpp:31449:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,358 31449 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,359 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,361 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,361 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,362 | ^ 2024-02-28T08:00:47,363 src/pgenlib/pgenlib.cpp:31469:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,363 31469 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,364 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,386 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_41__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,387 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,387 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,388 | ^ 2024-02-28T08:00:47,389 src/pgenlib/pgenlib.cpp:32140:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,389 32140 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,390 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,390 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,391 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,391 | ^ 2024-02-28T08:00:47,392 src/pgenlib/pgenlib.cpp:32142:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,392 32142 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,393 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,395 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,395 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,396 | ^ 2024-02-28T08:00:47,396 src/pgenlib/pgenlib.cpp:32144:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,397 32144 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,397 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,400 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,401 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,401 | ^ 2024-02-28T08:00:47,402 src/pgenlib/pgenlib.cpp:32157:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,402 32157 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,403 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,406 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,406 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,407 | ^ 2024-02-28T08:00:47,408 src/pgenlib/pgenlib.cpp:32167:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,409 32167 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,409 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,420 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_47__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,420 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,421 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,422 | ^ 2024-02-28T08:00:47,422 src/pgenlib/pgenlib.cpp:32617:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,423 32617 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,424 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,433 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenWriter_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-02-28T08:00:47,433 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,434 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,435 | ^ 2024-02-28T08:00:47,435 src/pgenlib/pgenlib.cpp:32830:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,436 32830 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,436 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,438 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,439 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,439 | ^ 2024-02-28T08:00:47,440 src/pgenlib/pgenlib.cpp:32832:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,440 32832 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,440 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,442 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,443 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,443 | ^ 2024-02-28T08:00:47,444 src/pgenlib/pgenlib.cpp:32834:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,444 32834 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,445 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,447 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,448 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,448 | ^ 2024-02-28T08:00:47,449 src/pgenlib/pgenlib.cpp:32836:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,449 32836 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,450 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,452 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,453 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,453 | ^ 2024-02-28T08:00:47,454 src/pgenlib/pgenlib.cpp:32838:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,454 32838 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,455 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,457 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,457 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,458 | ^ 2024-02-28T08:00:47,458 src/pgenlib/pgenlib.cpp:32840:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,459 32840 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,460 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,462 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,462 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,463 | ^ 2024-02-28T08:00:47,463 src/pgenlib/pgenlib.cpp:32842:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,464 32842 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,464 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,466 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,467 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,468 | ^ 2024-02-28T08:00:47,468 src/pgenlib/pgenlib.cpp:32844:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,469 32844 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,469 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,471 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,472 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,473 | ^ 2024-02-28T08:00:47,473 src/pgenlib/pgenlib.cpp:32846:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,473 32846 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,474 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,477 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,478 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,478 | ^ 2024-02-28T08:00:47,479 src/pgenlib/pgenlib.cpp:32859:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,479 32859 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,479 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,483 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,483 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,484 | ^ 2024-02-28T08:00:47,484 src/pgenlib/pgenlib.cpp:32869:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,485 32869 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,485 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,488 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,489 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,489 | ^ 2024-02-28T08:00:47,490 src/pgenlib/pgenlib.cpp:32876:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,491 32876 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,491 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,493 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,494 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,495 | ^ 2024-02-28T08:00:47,496 src/pgenlib/pgenlib.cpp:32883:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,496 32883 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,497 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,499 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,499 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,500 | ^ 2024-02-28T08:00:47,501 src/pgenlib/pgenlib.cpp:32890:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,501 32890 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,502 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,504 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,505 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,506 | ^ 2024-02-28T08:00:47,506 src/pgenlib/pgenlib.cpp:32897:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,507 32897 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,507 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,510 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,510 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,511 | ^ 2024-02-28T08:00:47,512 src/pgenlib/pgenlib.cpp:32904:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,512 32904 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,512 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,515 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,516 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,516 | ^ 2024-02-28T08:00:47,517 src/pgenlib/pgenlib.cpp:32911:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,517 32911 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,518 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,521 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,522 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,522 | ^ 2024-02-28T08:00:47,522 src/pgenlib/pgenlib.cpp:32926:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,523 32926 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,523 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,525 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,526 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,527 | ^ 2024-02-28T08:00:47,527 src/pgenlib/pgenlib.cpp:32928:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,528 32928 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,529 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,530 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,530 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,531 | ^ 2024-02-28T08:00:47,532 src/pgenlib/pgenlib.cpp:32930:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,532 32930 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,533 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,534 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,535 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,535 | ^ 2024-02-28T08:00:47,536 src/pgenlib/pgenlib.cpp:32932:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,536 32932 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,537 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,539 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,539 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,540 | ^ 2024-02-28T08:00:47,540 src/pgenlib/pgenlib.cpp:32934:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,541 32934 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,541 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,543 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,544 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,544 | ^ 2024-02-28T08:00:47,545 src/pgenlib/pgenlib.cpp:32936:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,545 32936 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,546 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,547 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,548 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,548 | ^ 2024-02-28T08:00:47,549 src/pgenlib/pgenlib.cpp:32938:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,550 32938 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,550 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,609 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_5append_biallelic(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,610 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,611 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,611 | ^ 2024-02-28T08:00:47,612 src/pgenlib/pgenlib.cpp:34410:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,612 34410 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,613 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,641 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_7append_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,642 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,643 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,643 | ^ 2024-02-28T08:00:47,644 src/pgenlib/pgenlib.cpp:35233:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,644 35233 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,645 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,646 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,647 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,647 | ^ 2024-02-28T08:00:47,648 src/pgenlib/pgenlib.cpp:35235:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,649 35235 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,649 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,651 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,652 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,652 | ^ 2024-02-28T08:00:47,653 src/pgenlib/pgenlib.cpp:35237:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,654 35237 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,654 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,657 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,657 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,658 | ^ 2024-02-28T08:00:47,659 src/pgenlib/pgenlib.cpp:35250:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,660 35250 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,660 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,662 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,663 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,663 | ^ 2024-02-28T08:00:47,664 src/pgenlib/pgenlib.cpp:35257:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,664 35257 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,665 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,668 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,669 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,669 | ^ 2024-02-28T08:00:47,670 src/pgenlib/pgenlib.cpp:35272:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,670 35272 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,671 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,673 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,674 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,674 | ^ 2024-02-28T08:00:47,675 src/pgenlib/pgenlib.cpp:35274:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,676 35274 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,677 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,706 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_9append_partially_phased(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,707 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,707 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,708 | ^ 2024-02-28T08:00:47,709 src/pgenlib/pgenlib.cpp:36026:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,709 36026 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,710 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,711 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,711 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,712 | ^ 2024-02-28T08:00:47,713 src/pgenlib/pgenlib.cpp:36028:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,713 36028 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,714 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,715 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,716 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,717 | ^ 2024-02-28T08:00:47,717 src/pgenlib/pgenlib.cpp:36030:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,718 36030 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,718 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,721 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,722 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,722 | ^ 2024-02-28T08:00:47,723 src/pgenlib/pgenlib.cpp:36043:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,724 36043 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,724 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,727 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,727 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,728 | ^ 2024-02-28T08:00:47,728 src/pgenlib/pgenlib.cpp:36053:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,729 36053 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,729 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,733 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,733 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,734 | ^ 2024-02-28T08:00:47,734 src/pgenlib/pgenlib.cpp:36068:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,735 36068 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,736 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,772 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_11append_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,772 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,773 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,774 | ^ 2024-02-28T08:00:47,775 src/pgenlib/pgenlib.cpp:36821:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,775 36821 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,776 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,795 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_13append_biallelic_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,795 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,796 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,797 | ^ 2024-02-28T08:00:47,798 src/pgenlib/pgenlib.cpp:37196:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,798 37196 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,799 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,837 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_15append_alleles_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,838 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,839 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,839 | ^ 2024-02-28T08:00:47,840 src/pgenlib/pgenlib.cpp:38278:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,841 38278 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,841 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,842 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,843 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,844 | ^ 2024-02-28T08:00:47,845 src/pgenlib/pgenlib.cpp:38280:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,846 38280 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,846 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,848 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,848 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,849 | ^ 2024-02-28T08:00:47,849 src/pgenlib/pgenlib.cpp:38282:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,850 38282 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,850 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,854 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,854 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,855 | ^ 2024-02-28T08:00:47,855 src/pgenlib/pgenlib.cpp:38295:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,856 38295 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,856 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,859 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,860 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,861 | ^ 2024-02-28T08:00:47,861 src/pgenlib/pgenlib.cpp:38302:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,862 38302 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,862 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,866 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,867 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,867 | ^ 2024-02-28T08:00:47,868 src/pgenlib/pgenlib.cpp:38317:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,869 38317 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,869 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,871 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,872 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,873 | ^ 2024-02-28T08:00:47,873 src/pgenlib/pgenlib.cpp:38319:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,874 38319 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,875 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,906 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_17append_partially_phased_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,907 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,907 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,908 | ^ 2024-02-28T08:00:47,909 src/pgenlib/pgenlib.cpp:39108:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,909 39108 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,910 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,911 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,912 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,913 | ^ 2024-02-28T08:00:47,913 src/pgenlib/pgenlib.cpp:39110:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,914 39110 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,914 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,916 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,917 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,917 | ^ 2024-02-28T08:00:47,918 src/pgenlib/pgenlib.cpp:39112:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,918 39112 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,919 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,922 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,923 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,924 | ^ 2024-02-28T08:00:47,924 src/pgenlib/pgenlib.cpp:39125:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,925 39125 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,925 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,928 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,929 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,929 | ^ 2024-02-28T08:00:47,930 src/pgenlib/pgenlib.cpp:39135:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,931 39135 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,932 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,935 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,935 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,936 | ^ 2024-02-28T08:00:47,937 src/pgenlib/pgenlib.cpp:39150:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,938 39150 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,939 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:47,978 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_19append_dosages_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:47,978 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:47,979 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:47,980 | ^ 2024-02-28T08:00:47,981 src/pgenlib/pgenlib.cpp:39967:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:47,981 39967 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:47,982 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,010 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_23__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:48,011 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,012 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,012 | ^ 2024-02-28T08:00:48,013 src/pgenlib/pgenlib.cpp:40584:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,013 40584 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,014 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,016 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,016 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,017 | ^ 2024-02-28T08:00:48,017 src/pgenlib/pgenlib.cpp:40586:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,018 40586 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,018 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,022 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,022 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,023 | ^ 2024-02-28T08:00:48,023 src/pgenlib/pgenlib.cpp:40588:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,024 40588 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,024 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,029 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,029 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,030 | ^ 2024-02-28T08:00:48,030 src/pgenlib/pgenlib.cpp:40601:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,031 40601 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,031 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,035 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,036 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,036 | ^ 2024-02-28T08:00:48,037 src/pgenlib/pgenlib.cpp:40611:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,038 40611 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,039 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,053 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_29__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T08:00:48,053 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,054 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,055 | ^ 2024-02-28T08:00:48,055 src/pgenlib/pgenlib.cpp:41022:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,056 41022 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,057 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,287 src/pgenlib/pgenlib.cpp: In function ‘const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context*, const char*)’: 2024-02-28T08:00:48,287 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,288 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,288 | ^ 2024-02-28T08:00:48,289 src/pgenlib/pgenlib.cpp:46119:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,290 46119 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,290 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,294 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,294 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,295 | ^ 2024-02-28T08:00:48,296 src/pgenlib/pgenlib.cpp:46132:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,296 46132 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,297 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,308 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_MultiplyCObj(PyObject*, PyObject*, long int, int, int)’: 2024-02-28T08:00:48,309 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,309 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,310 | ^ 2024-02-28T08:00:48,310 src/pgenlib/pgenlib.cpp:46260:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,311 46260 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,311 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,315 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,316 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,316 | ^ 2024-02-28T08:00:48,317 src/pgenlib/pgenlib.cpp:46271:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,317 46271 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,318 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,323 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,323 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,324 | ^ 2024-02-28T08:00:48,324 src/pgenlib/pgenlib.cpp:46282:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,325 46282 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,326 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,329 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,330 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,330 | ^ 2024-02-28T08:00:48,331 src/pgenlib/pgenlib.cpp:46293:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,332 46293 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,332 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,336 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,337 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,337 | ^ 2024-02-28T08:00:48,338 src/pgenlib/pgenlib.cpp:46304:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,339 46304 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,339 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,343 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,344 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,344 | ^ 2024-02-28T08:00:48,345 src/pgenlib/pgenlib.cpp:46315:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,346 46315 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,347 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,358 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_AddObjC(PyObject*, PyObject*, long int, int, int)’: 2024-02-28T08:00:48,358 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,359 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,359 | ^ 2024-02-28T08:00:48,360 src/pgenlib/pgenlib.cpp:46493:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,360 46493 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,360 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,365 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,365 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,366 | ^ 2024-02-28T08:00:48,366 src/pgenlib/pgenlib.cpp:46504:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,367 46504 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,367 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,371 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,372 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,373 | ^ 2024-02-28T08:00:48,373 src/pgenlib/pgenlib.cpp:46515:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,374 46515 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,375 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,378 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,379 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,380 | ^ 2024-02-28T08:00:48,380 src/pgenlib/pgenlib.cpp:46526:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,381 46526 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,381 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,386 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,386 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,387 | ^ 2024-02-28T08:00:48,388 src/pgenlib/pgenlib.cpp:46537:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,388 46537 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,389 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:00:48,393 src/pgenlib/pgenlib.cpp:561:55: warning: C++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ [-Wc++11-extensions] 2024-02-28T08:00:48,394 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T08:00:48,394 | ^ 2024-02-28T08:00:48,395 src/pgenlib/pgenlib.cpp:46548:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T08:00:48,396 46548 | CYTHON_FALLTHROUGH; 2024-02-28T08:00:48,396 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T08:01:44,542 At global scope: 2024-02-28T08:01:44,543 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2024-02-28T08:01:47,486 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:01:51,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:08,004 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:11,886 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:12,513 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_bgzf.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bgzf.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:14,100 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:16,360 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_string.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_string.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:23,017 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_text.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_text.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:25,148 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_thread.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_thread.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:25,636 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/include/plink2_zstfile.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_zstfile.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:26,045 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:27,640 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.11 -c src/plink2/pvar_ffi_support.cc -o build/temp.linux-armv7l-cpython-311/src/plink2/pvar_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T08:02:29,101 creating build/lib.linux-armv7l-cpython-311 2024-02-28T08:02:29,102 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-311/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bgzf.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_string.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_text.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_thread.o build/temp.linux-armv7l-cpython-311/src/plink2/include/plink2_zstfile.o build/temp.linux-armv7l-cpython-311/src/plink2/pgenlib_ffi_support.o build/temp.linux-armv7l-cpython-311/src/plink2/pvar_ffi_support.o -L/usr/lib/arm-linux-gnueabihf -Lbuild/temp.linux-armv7l-cpython-311 -lclib -o build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -std=c++98 -lz 2024-02-28T08:02:29,653 installing to build/bdist.linux-armv7l/wheel 2024-02-28T08:02:29,654 running install 2024-02-28T08:02:29,678 running install_lib 2024-02-28T08:02:29,685 creating build/bdist.linux-armv7l 2024-02-28T08:02:29,686 creating build/bdist.linux-armv7l/wheel 2024-02-28T08:02:29,688 copying build/lib.linux-armv7l-cpython-311/pgenlib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-02-28T08:02:29,764 running install_egg_info 2024-02-28T08:02:29,776 running egg_info 2024-02-28T08:02:29,781 writing src/Pgenlib.egg-info/PKG-INFO 2024-02-28T08:02:29,784 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2024-02-28T08:02:29,785 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2024-02-28T08:02:29,788 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T08:02:29,789 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-28T08:02:29,789 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T08:02:29,790 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-28T08:02:29,790 dependency /tmp/pip-build-env-0kspppc0/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T08:02:29,802 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T08:02:29,833 reading manifest template 'MANIFEST.in' 2024-02-28T08:02:29,846 adding license file 'LICENSE' 2024-02-28T08:02:29,860 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T08:02:29,862 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.90.2-py3.11.egg-info 2024-02-28T08:02:29,869 running install_scripts 2024-02-28T08:02:29,913 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.90.2.dist-info/WHEEL 2024-02-28T08:02:29,916 creating '/tmp/pip-wheel-mq13bbod/.tmp-usp82o58/Pgenlib-0.90.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-28T08:02:30,937 adding 'pgenlib.cpython-311-arm-linux-gnueabihf.so' 2024-02-28T08:02:30,972 adding 'Pgenlib-0.90.2.dist-info/LICENSE' 2024-02-28T08:02:30,974 adding 'Pgenlib-0.90.2.dist-info/METADATA' 2024-02-28T08:02:30,975 adding 'Pgenlib-0.90.2.dist-info/WHEEL' 2024-02-28T08:02:30,976 adding 'Pgenlib-0.90.2.dist-info/top_level.txt' 2024-02-28T08:02:30,976 adding 'Pgenlib-0.90.2.dist-info/RECORD' 2024-02-28T08:02:30,998 removing build/bdist.linux-armv7l/wheel 2024-02-28T08:02:31,175 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2024-02-28T08:02:31,229 Created wheel for pgenlib: filename=Pgenlib-0.90.2-cp311-cp311-linux_armv7l.whl size=2224252 sha256=b1a3f8e9d9d88f9f0127ec2fd2a510bef24c5af41ad1370284af8509fe789751 2024-02-28T08:02:31,230 Stored in directory: /tmp/pip-ephem-wheel-cache-zfj6k1zt/wheels/bd/bd/79/25728681db74712f076563e9a3ff12330c9e87795e5236c6b1 2024-02-28T08:02:31,241 Successfully built pgenlib 2024-02-28T08:02:31,297 Removed build tracker: '/tmp/pip-build-tracker-mp84h77w'