2024-02-28T10:05:16,291 Created temporary directory: /tmp/pip-build-tracker-7v56rgl1 2024-02-28T10:05:16,292 Initialized build tracking at /tmp/pip-build-tracker-7v56rgl1 2024-02-28T10:05:16,293 Created build tracker: /tmp/pip-build-tracker-7v56rgl1 2024-02-28T10:05:16,293 Entered build tracker: /tmp/pip-build-tracker-7v56rgl1 2024-02-28T10:05:16,293 Created temporary directory: /tmp/pip-wheel-99pkcm2k 2024-02-28T10:05:16,297 Created temporary directory: /tmp/pip-ephem-wheel-cache-9u3mzkqr 2024-02-28T10:05:16,321 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T10:05:16,324 2 location(s) to search for versions of pgenlib: 2024-02-28T10:05:16,324 * https://pypi.org/simple/pgenlib/ 2024-02-28T10:05:16,324 * https://www.piwheels.org/simple/pgenlib/ 2024-02-28T10:05:16,325 Fetching project page and analyzing links: https://pypi.org/simple/pgenlib/ 2024-02-28T10:05:16,325 Getting page https://pypi.org/simple/pgenlib/ 2024-02-28T10:05:16,327 Found index url https://pypi.org/simple/ 2024-02-28T10:05:16,378 Fetched page https://pypi.org/simple/pgenlib/ as application/vnd.pypi.simple.v1+json 2024-02-28T10:05:16,390 Found link https://files.pythonhosted.org/packages/d9/cc/f3bbaa8da897e9a04e1a885183a0c533ba563bb3a1dbfba6680704473336/Pgenlib-0.81.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.1 2024-02-28T10:05:16,390 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/22/06/d83bcf26ea2212baccc88b3771c78dce0eff643a1293aa3f8993c242fe02/Pgenlib-0.81.2-cp37-cp37m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,391 Found link https://files.pythonhosted.org/packages/6d/f7/c286a64ec213ea42bfa67b20ce1271b0b8699ac3880854657f8ed1620759/Pgenlib-0.81.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.2 2024-02-28T10:05:16,392 Found link https://files.pythonhosted.org/packages/38/09/74ec09b0c9ddde6a3562898507b99b47adde5350248f2899b59edcc082b0/Pgenlib-0.81.3.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.81.3 2024-02-28T10:05:16,392 Found link https://files.pythonhosted.org/packages/29/d3/311512e956d1bc898cd6020e15691e2778e1bf3a1c2e01eadbb6031d8bd5/Pgenlib-0.82.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.0 2024-02-28T10:05:16,392 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/2b/91/1d7b72b61c624763fc29c3e54df394bc611080a3dc2176af2332257e8fac/Pgenlib-0.82.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,393 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/30/d1/166d130225f03033df8ca688ef54dca200fb3de3419f0edc914afd21a3a7/Pgenlib-0.82.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,393 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/be/d5/85dc2412def8644cccfafe6722e7d1c5411c9725366156eef4aec843ba95/Pgenlib-0.82.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,393 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a1/74/ade2137ac2eee449bfa959f5808cc6d1bdc6cec4cd9b4fabcd416246a889/Pgenlib-0.82.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,393 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/9a/65/79600073fc41faaa2b008b1bedf9233125aeaad404a973e563810268a626/Pgenlib-0.82.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,393 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/29/20/876e704d95b3ca26e7a554532385d52f2133cd99d2f132a29fb16062cb4d/Pgenlib-0.82.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,394 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b5/32/8dbf9cb1a3a3a6950deab99e0515a753273396ef1770b5d2491e1f8eaba9/Pgenlib-0.82.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,394 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/fc/24/2e6994141f63fd6c129b0bd0bbc9ef8df91e98b171a5ae0a5aeb7a01532c/Pgenlib-0.82.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,394 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/8e/3a2eef4571d6d2c8604a3810c3e092c9e145839934dde6c91ecf4be63be8/Pgenlib-0.82.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,395 Found link https://files.pythonhosted.org/packages/9b/d1/73c8eb879691b5ef443cf3c26e801590a7eac657264f80538c7541266fa8/Pgenlib-0.82.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.82.1 2024-02-28T10:05:16,395 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/0a/86ce9fc2291a83b63817ac43b8f2924af9c02746b4f20c44142ce9f8a4ce/Pgenlib-0.83.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,395 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/54/73/924728769d9bd1e738190588c1ac1c2fc53d65641565c013ac1d79fe8403/Pgenlib-0.83.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,395 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/3b/22/29e510423558b22e98374496ef7c8b178c5f4d47f6e9c1fe4999c6ee8761/Pgenlib-0.83.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,395 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7c/a9/5987776baf730f0f8e8b44b7c358f8b2b44cb24f9fa938b9f6dcb8724f69/Pgenlib-0.83.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,396 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/88/64/2df132fbea4b3aad80aab161c90e9f24e5d494917605b1f01f522950d07e/Pgenlib-0.83.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,396 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/02/4e/df2808d3f87f77419e0abb68544f0f220c261a7eed6433c7150eff1fec49/Pgenlib-0.83.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,396 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c1/14/00aaf84a05ae9b25f51af36f285614e42c557860051fe16ef0860b03b3c6/Pgenlib-0.83.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,396 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/a8/832b27db6e563e46c40e59714a0adf09959d67d964feb5ef84b51f89a0b9/Pgenlib-0.83.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,396 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/5b/ba/ba9401daf559588f84aa8ff82b55ce1aac6339a69028a3b14748af74539f/Pgenlib-0.83.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,397 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b6/d7/6cf098fd410209d749e41610daeb12b440ea603a45f787a49474461c6043/Pgenlib-0.83.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,397 Found link https://files.pythonhosted.org/packages/b5/f4/6cd16a7f543438c5910cec68bd5d49d231152753f3f53f4dda1322305522/Pgenlib-0.83.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.83.0 2024-02-28T10:05:16,397 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/16/24/5e5f3f751fc014e67c567073089e5ff22887c890ddcb33b2eee234b2ff66/Pgenlib-0.90.0-cp310-cp310-macosx_13_0_arm64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,398 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/43/45/b23b200529cc05e27de60c6623e3c272f3babacd46ba7ca04f8ba8cee212/Pgenlib-0.90.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,398 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/95/af/14f03aa5e6568810347aef280eb57b82a5a45e03f33c9653d56685a5157c/Pgenlib-0.90.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,398 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/59/d6/7157c61da0ebb0d2f05ba178ef1c57e567054192e47153ea29952de377c9/Pgenlib-0.90.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,398 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/4b/62/3d03109e3a79b4981cde01c00f7d63b2f850599d3b4c06125e0561b0dbd7/Pgenlib-0.90.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,398 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/7f/75/03cbd46f9f1cb21c22745c4548f85b5e548b1e5a5cbb4d69064f111c3f77/Pgenlib-0.90.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,399 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/da/25/eef614e9ea13964aed3aa93211d44fc0a53591fe59901def7f0842c26259/Pgenlib-0.90.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,399 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f3/b0/01e1c04e3fe156252d1ebb82f362da5642a128d72c5a67c481b26986d450/Pgenlib-0.90.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,399 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/05/cc/185166c604f18f1d60291fd0d407d6c02b26e712af8e39bfaabfe9be57ce/Pgenlib-0.90.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,399 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/45/60/dd584321eedc419f7b1aee92fc15110070714ca949ee012bf5dddffec6cf/Pgenlib-0.90.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,400 Found link https://files.pythonhosted.org/packages/dc/26/3150424408411a6f326db5b2f61a5accf900dfe3d287f4452e73d62b0b01/Pgenlib-0.90.0.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.0 2024-02-28T10:05:16,400 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0a/24/eb4944605bf1ad5142466d268aac02ca2c1e57242511578ae521c3427e77/Pgenlib-0.90.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,400 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/47/c5/b8acab2c2db8acbf153d4e1284236838d31c0f17df797f04f15686e5f15d/Pgenlib-0.90.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,400 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/00/66/4764ab01efa2952b57457324007f5f821ac124a234bb1bd24ff0e6e80df6/Pgenlib-0.90.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,401 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/f5/16/3f9fce33a062ed8b6b35aa85517fd291e43636172d1e4a72dacb8538799e/Pgenlib-0.90.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,401 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/67/f3/b823df42f317a6bc4212095457d451a03c7dba99b55440d3ffeaf3ca4626/Pgenlib-0.90.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,401 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/b7/6d/db7f7f9acb0dd3c0a39055738727a047371595a3c79f13c29e77b633eb72/Pgenlib-0.90.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,401 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e3/84/c69234c8f522d7d67459ad1288fb516a39f588dcab297b29a619ee3f340b/Pgenlib-0.90.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,401 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/82/44/df286e42696ea0bf1f817e5a7a924f268ee25d4644c654f4b89f14375705/Pgenlib-0.90.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,402 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/c3/c3/30647c9cbafe729c786891bb3c873535bf8d667fb6b218642ada95738517/Pgenlib-0.90.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,402 Found link https://files.pythonhosted.org/packages/75/02/d5151e065fd355fc365adf472017db0f25f199f5a550df1d4bb9808ba67d/Pgenlib-0.90.1.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.1 2024-02-28T10:05:16,402 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/0c/80/d561e55243fd241b2a62e6a53c4ce417fbd45262eb88deddd4ca0919d59b/Pgenlib-0.90.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,403 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/14/69/69b3665864ef6393949d8cdf702e4d8404ae316c6d549f73eb83e6e7577b/Pgenlib-0.90.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,403 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/20/84/7a2c2509d2f998d92884c4dd68b2003eafe11cafa45728cdbbb2c19ef89e/Pgenlib-0.90.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,403 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/e7/ed/79bb17524d472dc9538acca2c02c7048a74134606b22b35b22274b572acd/Pgenlib-0.90.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,403 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/a8/33/d2a53933f482f12f67c6b0b3a4cc23db48452c10ed66f5508c69a4ea256f/Pgenlib-0.90.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,403 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/dd/43/4ba76d0de21abf47f3f01ddd48d0c75fb69b7c341af63ce0501c81eeee11/Pgenlib-0.90.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,404 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/89/8a/0923185576ae4c3e2fd78f3f409f0ad88c64386f0d5805343d56dc9915a4/Pgenlib-0.90.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,404 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/87/bd/4fa502ecdd6b567344b45d95a23646200aa29f37aca0aa1ec1964d63c266/Pgenlib-0.90.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,404 Skipping link: No binaries permitted for pgenlib: https://files.pythonhosted.org/packages/8d/fb/778474f5bf817493b7045c6b1683f35e93a86920c7c6f3f33465f09a874e/Pgenlib-0.90.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:16,405 Found link https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz (from https://pypi.org/simple/pgenlib/) (requires-python:>=3.5), version: 0.90.2 2024-02-28T10:05:16,405 Fetching project page and analyzing links: https://www.piwheels.org/simple/pgenlib/ 2024-02-28T10:05:16,405 Getting page https://www.piwheels.org/simple/pgenlib/ 2024-02-28T10:05:16,406 Found index url https://www.piwheels.org/simple/ 2024-02-28T10:05:17,459 Fetched page https://www.piwheels.org/simple/pgenlib/ as text/html 2024-02-28T10:05:17,478 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.2-cp311-cp311-linux_armv6l.whl#sha256=b1a3f8e9d9d88f9f0127ec2fd2a510bef24c5af41ad1370284af8509fe789751 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,479 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.2-cp311-cp311-linux_armv7l.whl#sha256=b1a3f8e9d9d88f9f0127ec2fd2a510bef24c5af41ad1370284af8509fe789751 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,479 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv6l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,480 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.1-cp39-cp39-linux_armv7l.whl#sha256=e603ad759fc12e178a3c2d3fb74b25cbb9d9ffcaf1d24dfac70f02101dab2684 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,480 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv6l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,481 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.90.0-cp39-cp39-linux_armv7l.whl#sha256=3893959a4ddc9a66babc9c59a168b24d56baa0b009e29e55873dd5640e4607fd (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,481 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv6l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,482 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.83.0-cp39-cp39-linux_armv7l.whl#sha256=5a4f481c10f8f098bf8540a7051c26b226ded60fbadcb760bc8b490ed7f9d50e (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,482 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv6l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,483 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp39-cp39-linux_armv7l.whl#sha256=7f2cd443fbc7956edef6af632c8b31dc2b48cd9cca92bacece82495cdff52291 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,483 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp311-cp311-linux_armv6l.whl#sha256=fcca7b23c797befa1d51e949b32db523dfb431d5ac126d684d49ec454cb49180 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,484 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.1-cp311-cp311-linux_armv7l.whl#sha256=fcca7b23c797befa1d51e949b32db523dfb431d5ac126d684d49ec454cb49180 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,484 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv6l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,484 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp39-cp39-linux_armv7l.whl#sha256=b38d7233c5515f730969499da3b95e95f64109573755cdda562026109c999c33 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,485 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp311-cp311-linux_armv6l.whl#sha256=4da917a14038914fca7ee7cc073bbfac5f01312f9102fdb7bbd34291a05dca32 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,485 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.82.0-cp311-cp311-linux_armv7l.whl#sha256=4da917a14038914fca7ee7cc073bbfac5f01312f9102fdb7bbd34291a05dca32 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,486 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv6l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,486 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp39-cp39-linux_armv7l.whl#sha256=5a7e6ce67f2000041a2e5d373924f58245f07fb04f09b9c5740c8554ff44d333 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,487 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv6l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,487 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.3-cp311-cp311-linux_armv7l.whl#sha256=d35941b198cb411716265233328d85e638faae97f31afeff3c50b56f287d8a88 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,488 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv6l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,488 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.2-cp39-cp39-linux_armv7l.whl#sha256=2e0ad339664cbc60a4ae0b3a935afcf56d3e1a344387d8327ae50b03dce0d852 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,489 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv6l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,489 Skipping link: No binaries permitted for pgenlib: https://www.piwheels.org/simple/pgenlib/Pgenlib-0.81.1-cp39-cp39-linux_armv7l.whl#sha256=7fe4ecefc0464d30dc029a926937523d919f28fa0320e6522fa229764a168909 (from https://www.piwheels.org/simple/pgenlib/) (requires-python:>=3.5) 2024-02-28T10:05:17,490 Skipping link: not a file: https://www.piwheels.org/simple/pgenlib/ 2024-02-28T10:05:17,490 Skipping link: not a file: https://pypi.org/simple/pgenlib/ 2024-02-28T10:05:17,525 Given no hashes to check 1 links for project 'pgenlib': discarding no candidates 2024-02-28T10:05:17,542 Collecting pgenlib==0.90.2 2024-02-28T10:05:17,544 Created temporary directory: /tmp/pip-unpack-47pxwy_4 2024-02-28T10:05:17,594 Downloading Pgenlib-0.90.2.tar.gz (1.4 MB) 2024-02-28T10:05:18,700 Added pgenlib==0.90.2 from https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz to build tracker '/tmp/pip-build-tracker-7v56rgl1' 2024-02-28T10:05:18,706 Created temporary directory: /tmp/pip-build-env-41u1dvxl 2024-02-28T10:05:18,716 Installing build dependencies: started 2024-02-28T10:05:18,717 Running command pip subprocess to install build dependencies 2024-02-28T10:05:19,916 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-02-28T10:05:20,458 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T10:05:22,339 Collecting setuptools 2024-02-28T10:05:22,492 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB) 2024-02-28T10:05:22,753 Collecting wheel 2024-02-28T10:05:23,368 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-28T10:05:23,775 Collecting oldest-supported-numpy>=2022.8.16 2024-02-28T10:05:23,816 Using cached https://www.piwheels.org/simple/oldest-supported-numpy/oldest_supported_numpy-2023.12.21-py3-none-any.whl (4.9 kB) 2024-02-28T10:05:25,163 Collecting Cython>=0.29.21 2024-02-28T10:05:25,164 Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata 2024-02-28T10:05:25,183 Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB) 2024-02-28T10:05:26,544 Collecting numpy==1.19.3 (from oldest-supported-numpy>=2022.8.16) 2024-02-28T10:05:26,586 Using cached https://www.piwheels.org/simple/numpy/numpy-1.19.3-cp39-cp39-linux_armv7l.whl (10.5 MB) 2024-02-28T10:05:26,967 Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB) 2024-02-28T10:05:28,848 Installing collected packages: wheel, setuptools, numpy, Cython, oldest-supported-numpy 2024-02-28T10:05:29,078 Creating /tmp/pip-build-env-41u1dvxl/overlay/bin 2024-02-28T10:05:29,080 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/wheel to 755 2024-02-28T10:05:38,310 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/f2py to 755 2024-02-28T10:05:38,312 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/f2py3 to 755 2024-02-28T10:05:38,314 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/f2py3.9 to 755 2024-02-28T10:05:41,371 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/cygdb to 755 2024-02-28T10:05:41,374 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/cython to 755 2024-02-28T10:05:41,377 changing mode of /tmp/pip-build-env-41u1dvxl/overlay/bin/cythonize to 755 2024-02-28T10:05:41,420 Successfully installed Cython-3.0.8 numpy-1.19.3 oldest-supported-numpy-2023.12.21 setuptools-69.1.1 wheel-0.42.0 2024-02-28T10:05:41,611 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-28T10:05:41,611 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-28T10:05:42,064 Installing build dependencies: finished with status 'done' 2024-02-28T10:05:42,070 Getting requirements to build wheel: started 2024-02-28T10:05:42,071 Running command Getting requirements to build wheel 2024-02-28T10:05:53,133 Compiling src/pgenlib/pgenlib.pyx because it depends on /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2024-02-28T10:05:53,134 [1/1] Cythonizing src/pgenlib/pgenlib.pyx 2024-02-28T10:05:53,208 running egg_info 2024-02-28T10:05:53,216 writing src/Pgenlib.egg-info/PKG-INFO 2024-02-28T10:05:53,220 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2024-02-28T10:05:53,222 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2024-02-28T10:05:53,257 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:53,257 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:53,258 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:53,258 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:53,258 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:53,279 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:05:53,316 reading manifest template 'MANIFEST.in' 2024-02-28T10:05:53,337 adding license file 'LICENSE' 2024-02-28T10:05:53,353 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:05:53,801 Getting requirements to build wheel: finished with status 'done' 2024-02-28T10:05:53,811 Created temporary directory: /tmp/pip-modern-metadata-2572mex9 2024-02-28T10:05:53,814 Preparing metadata (pyproject.toml): started 2024-02-28T10:05:53,815 Running command Preparing metadata (pyproject.toml) 2024-02-28T10:05:55,426 running dist_info 2024-02-28T10:05:55,448 creating /tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info 2024-02-28T10:05:55,454 writing /tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info/PKG-INFO 2024-02-28T10:05:55,457 writing dependency_links to /tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info/dependency_links.txt 2024-02-28T10:05:55,459 writing top-level names to /tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info/top_level.txt 2024-02-28T10:05:55,460 writing manifest file '/tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:05:55,487 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:55,488 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:55,488 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:55,488 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:55,488 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:05:55,502 reading manifest file '/tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:05:55,504 reading manifest template 'MANIFEST.in' 2024-02-28T10:05:55,518 adding license file 'LICENSE' 2024-02-28T10:05:55,530 writing manifest file '/tmp/pip-modern-metadata-2572mex9/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:05:55,531 creating '/tmp/pip-modern-metadata-2572mex9/Pgenlib-0.90.2.dist-info' 2024-02-28T10:05:55,746 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-28T10:05:55,752 Source in /tmp/pip-wheel-99pkcm2k/pgenlib_22b9904bf278494fa1fe8ed01a4cc286 has version 0.90.2, which satisfies requirement pgenlib==0.90.2 from https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz 2024-02-28T10:05:55,753 Removed pgenlib==0.90.2 from https://files.pythonhosted.org/packages/73/4b/9ac483cc61a7915bf2337431881019345e61ad25a93c9d3e299dd819ece7/Pgenlib-0.90.2.tar.gz from build tracker '/tmp/pip-build-tracker-7v56rgl1' 2024-02-28T10:05:55,759 Created temporary directory: /tmp/pip-unpack-nlg_q2kq 2024-02-28T10:05:55,760 Created temporary directory: /tmp/pip-unpack-8wn9ql7o 2024-02-28T10:05:55,762 Building wheels for collected packages: pgenlib 2024-02-28T10:05:55,766 Created temporary directory: /tmp/pip-wheel-9pxlxac2 2024-02-28T10:05:55,766 Destination directory: /tmp/pip-wheel-9pxlxac2 2024-02-28T10:05:55,768 Building wheel for pgenlib (pyproject.toml): started 2024-02-28T10:05:55,769 Running command Building wheel for pgenlib (pyproject.toml) 2024-02-28T10:05:57,382 running bdist_wheel 2024-02-28T10:05:57,437 running build 2024-02-28T10:05:57,437 running build_clib 2024-02-28T10:05:57,449 building 'clib' library 2024-02-28T10:05:57,452 creating build 2024-02-28T10:05:57,452 creating build/temp.linux-armv7l-cpython-39 2024-02-28T10:05:57,453 creating build/temp.linux-armv7l-cpython-39/src 2024-02-28T10:05:57,454 creating build/temp.linux-armv7l-cpython-39/src/plink2 2024-02-28T10:05:57,455 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate 2024-02-28T10:05:57,455 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib 2024-02-28T10:05:57,456 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm 2024-02-28T10:05:57,457 creating build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86 2024-02-28T10:05:57,458 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd 2024-02-28T10:05:57,459 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib 2024-02-28T10:05:57,459 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common 2024-02-28T10:05:57,461 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress 2024-02-28T10:05:57,462 creating build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress 2024-02-28T10:05:57,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/adler32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o 2024-02-28T10:05:58,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/arm/arm_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o 2024-02-28T10:05:58,136 src/plink2/libdeflate/lib/arm/arm_cpu_features.c: In function ‘scan_auxv’: 2024-02-28T10:05:58,136 src/plink2/libdeflate/lib/arm/arm_cpu_features.c:83:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-02-28T10:05:58,137 83 | } while (filled < 2 * sizeof(long)); 2024-02-28T10:05:58,137 | ^ 2024-02-28T10:05:58,137 src/plink2/libdeflate/lib/arm/arm_cpu_features.c:96:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-02-28T10:05:58,137 96 | } while (filled >= 2 * sizeof(long)); 2024-02-28T10:05:58,137 | ^~ 2024-02-28T10:05:58,224 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/crc32.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o 2024-02-28T10:05:58,939 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o 2024-02-28T10:06:04,679 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/deflate_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o 2024-02-28T10:06:05,563 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o 2024-02-28T10:06:05,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/gzip_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o 2024-02-28T10:06:05,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/utils.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o 2024-02-28T10:06:06,002 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/x86/x86_cpu_features.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o 2024-02-28T10:06:06,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o 2024-02-28T10:06:06,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/libdeflate/lib/zlib_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o 2024-02-28T10:06:06,403 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/debug.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o 2024-02-28T10:06:06,511 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/entropy_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o 2024-02-28T10:06:06,935 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/error_private.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o 2024-02-28T10:06:07,056 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/fse_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o 2024-02-28T10:06:07,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/pool.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o 2024-02-28T10:06:08,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/threading.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o 2024-02-28T10:06:08,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/xxhash.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o 2024-02-28T10:06:09,216 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/common/zstd_common.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o 2024-02-28T10:06:09,410 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/fse_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o 2024-02-28T10:06:10,203 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/hist.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o 2024-02-28T10:06:10,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/huf_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o 2024-02-28T10:06:12,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o 2024-02-28T10:06:18,669 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_literals.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o 2024-02-28T10:06:19,002 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_sequences.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o 2024-02-28T10:06:19,618 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_compress_superblock.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o 2024-02-28T10:06:20,294 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_double_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o 2024-02-28T10:06:28,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_fast.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o 2024-02-28T10:06:35,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_lazy.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o 2024-02-28T10:07:06,030 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_ldm.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o 2024-02-28T10:07:07,201 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstd_opt.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o 2024-02-28T10:07:13,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/compress/zstdmt_compress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o 2024-02-28T10:07:14,980 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/huf_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o 2024-02-28T10:07:18,671 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_ddict.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o 2024-02-28T10:07:19,016 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o 2024-02-28T10:07:21,025 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC -Isrc/plink2/libdeflate -c src/plink2/zstd/lib/decompress/zstd_decompress_block.c -o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2024-02-28T10:07:26,864 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libclib.a build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/adler32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/arm/arm_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/crc32.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/deflate_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/gzip_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/utils.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/x86/x86_cpu_features.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/libdeflate/lib/zlib_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/debug.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/entropy_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/error_private.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/fse_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/pool.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/threading.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/xxhash.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/common/zstd_common.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/fse_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/hist.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/huf_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_literals.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_sequences.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_compress_superblock.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_double_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_fast.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_lazy.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_ldm.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstd_opt.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/compress/zstdmt_compress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/huf_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_ddict.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress.o build/temp.linux-armv7l-cpython-39/src/plink2/zstd/lib/decompress/zstd_decompress_block.o 2024-02-28T10:07:27,134 running build_ext 2024-02-28T10:07:27,139 building 'pgenlib' extension 2024-02-28T10:07:27,141 creating build/temp.linux-armv7l-cpython-39/src/pgenlib 2024-02-28T10:07:27,142 creating build/temp.linux-armv7l-cpython-39/src/plink2/include 2024-02-28T10:07:27,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/pgenlib/pgenlib.cpp -o build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:07:27,414 In file included from /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2024-02-28T10:07:27,414 from /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2024-02-28T10:07:27,414 from /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2024-02-28T10:07:27,414 from src/pgenlib/pgenlib.cpp:1258: 2024-02-28T10:07:27,414 /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2024-02-28T10:07:27,415 17 | #warning "Using deprecated NumPy API, disable it with " \ 2024-02-28T10:07:27,415 | ^~~~~~~ 2024-02-28T10:07:27,478 src/pgenlib/pgenlib.cpp:1514: warning: "likely" redefined 2024-02-28T10:07:27,478 1514 | #define likely(x) __builtin_expect(!!(x), 1) 2024-02-28T10:07:27,479 | 2024-02-28T10:07:27,479 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2024-02-28T10:07:27,479 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2024-02-28T10:07:27,480 from src/pgenlib/pgenlib.cpp:1263: 2024-02-28T10:07:27,480 src/pgenlib/../plink2/include/plink2_base.h:274: note: this is the location of the previous definition 2024-02-28T10:07:27,480 274 | # define likely(expr) __builtin_expect(!!(expr), 1) 2024-02-28T10:07:27,480 | 2024-02-28T10:07:27,480 src/pgenlib/pgenlib.cpp:1515: warning: "unlikely" redefined 2024-02-28T10:07:27,481 1515 | #define unlikely(x) __builtin_expect(!!(x), 0) 2024-02-28T10:07:27,481 | 2024-02-28T10:07:27,481 In file included from src/pgenlib/../plink2/include/plink2_bits.h:23, 2024-02-28T10:07:27,481 from src/pgenlib/../plink2/include/pgenlib_misc.h:77, 2024-02-28T10:07:27,481 from src/pgenlib/pgenlib.cpp:1263: 2024-02-28T10:07:27,481 src/pgenlib/../plink2/include/plink2_base.h:275: note: this is the location of the previous definition 2024-02-28T10:07:27,482 275 | # define unlikely(expr) __builtin_expect(!!(expr), 0) 2024-02-28T10:07:27,482 | 2024-02-28T10:07:28,451 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PvarReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-02-28T10:07:28,451 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,451 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,451 | ^ 2024-02-28T10:07:28,452 src/pgenlib/pgenlib.cpp:7011:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,452 7011 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,452 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,480 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_7get_variant_id(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,480 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,480 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,480 | ^ 2024-02-28T10:07:28,481 src/pgenlib/pgenlib.cpp:7782:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,481 7782 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,481 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,494 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_9get_allele_ct(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,494 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,494 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,494 | ^ 2024-02-28T10:07:28,495 src/pgenlib/pgenlib.cpp:8138:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,495 8138 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,495 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,512 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_11get_allele_code(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,512 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,512 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,512 | ^ 2024-02-28T10:07:28,512 src/pgenlib/pgenlib.cpp:8594:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,512 8594 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,512 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,513 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,513 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,514 | ^ 2024-02-28T10:07:28,514 src/pgenlib/pgenlib.cpp:8596:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,514 8596 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,514 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,516 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,516 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,516 | ^ 2024-02-28T10:07:28,516 src/pgenlib/pgenlib.cpp:8609:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,516 8609 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,517 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,555 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_19__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,555 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,555 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,555 | ^ 2024-02-28T10:07:28,555 src/pgenlib/pgenlib.cpp:9633:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,555 9633 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,555 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,556 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,557 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,557 | ^ 2024-02-28T10:07:28,557 src/pgenlib/pgenlib.cpp:9635:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,557 9635 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,557 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,558 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,559 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,559 | ^ 2024-02-28T10:07:28,559 src/pgenlib/pgenlib.cpp:9637:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,559 9637 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,559 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,561 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,561 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,561 | ^ 2024-02-28T10:07:28,561 src/pgenlib/pgenlib.cpp:9650:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,562 9650 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,562 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,564 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,564 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,564 | ^ 2024-02-28T10:07:28,564 src/pgenlib/pgenlib.cpp:9660:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,564 9660 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,564 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,571 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PvarReader_25__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,572 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,572 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,572 | ^ 2024-02-28T10:07:28,572 src/pgenlib/pgenlib.cpp:9922:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,572 9922 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,572 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,595 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenReader_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-02-28T10:07:28,595 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,595 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,595 | ^ 2024-02-28T10:07:28,595 src/pgenlib/pgenlib.cpp:10666:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,595 10666 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,595 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,597 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,597 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,597 | ^ 2024-02-28T10:07:28,597 src/pgenlib/pgenlib.cpp:10668:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,597 10668 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,598 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,599 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,599 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,599 | ^ 2024-02-28T10:07:28,600 src/pgenlib/pgenlib.cpp:10670:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,600 10670 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,600 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,601 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,601 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,602 | ^ 2024-02-28T10:07:28,602 src/pgenlib/pgenlib.cpp:10672:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,602 10672 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,602 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,603 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,604 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,604 | ^ 2024-02-28T10:07:28,604 src/pgenlib/pgenlib.cpp:10674:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,604 10674 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,604 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,606 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,606 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,606 | ^ 2024-02-28T10:07:28,606 src/pgenlib/pgenlib.cpp:10676:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,606 10676 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,606 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,608 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,609 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,609 | ^ 2024-02-28T10:07:28,609 src/pgenlib/pgenlib.cpp:10689:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,609 10689 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,609 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,611 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,611 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,611 | ^ 2024-02-28T10:07:28,612 src/pgenlib/pgenlib.cpp:10696:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,612 10696 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,612 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,614 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,614 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,614 | ^ 2024-02-28T10:07:28,614 src/pgenlib/pgenlib.cpp:10703:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,614 10703 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,614 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,616 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,616 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,617 | ^ 2024-02-28T10:07:28,617 src/pgenlib/pgenlib.cpp:10710:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,617 10710 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,617 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,619 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,619 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,619 | ^ 2024-02-28T10:07:28,619 src/pgenlib/pgenlib.cpp:10717:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,619 10717 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,620 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,622 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,622 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,622 | ^ 2024-02-28T10:07:28,623 src/pgenlib/pgenlib.cpp:10732:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,623 10732 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,623 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,624 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,625 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,625 | ^ 2024-02-28T10:07:28,625 src/pgenlib/pgenlib.cpp:10734:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,625 10734 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,625 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,627 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,627 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,627 | ^ 2024-02-28T10:07:28,627 src/pgenlib/pgenlib.cpp:10736:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,627 10736 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,627 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,629 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,629 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,629 | ^ 2024-02-28T10:07:28,629 src/pgenlib/pgenlib.cpp:10738:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,629 10738 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,630 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,631 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,631 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,632 | ^ 2024-02-28T10:07:28,632 src/pgenlib/pgenlib.cpp:10740:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,632 10740 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,632 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,684 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read*)’: 2024-02-28T10:07:28,685 src/pgenlib/pgenlib.cpp:13100:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,685 13100 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,685 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,703 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_11read(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,704 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,704 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,704 | ^ 2024-02-28T10:07:28,704 src/pgenlib/pgenlib.cpp:13455:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,704 13455 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,704 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,706 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,706 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,706 | ^ 2024-02-28T10:07:28,706 src/pgenlib/pgenlib.cpp:13457:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,706 13457 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,706 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,708 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,708 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,708 | ^ 2024-02-28T10:07:28,708 src/pgenlib/pgenlib.cpp:13459:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,709 13459 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,709 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,711 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,711 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,711 | ^ 2024-02-28T10:07:28,712 src/pgenlib/pgenlib.cpp:13472:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,712 13472 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,712 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,714 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,714 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,714 | ^ 2024-02-28T10:07:28,715 src/pgenlib/pgenlib.cpp:13482:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,715 13482 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,715 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,717 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,718 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,718 | ^ 2024-02-28T10:07:28,718 src/pgenlib/pgenlib.cpp:13497:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,718 13497 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,718 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,730 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages*)’: 2024-02-28T10:07:28,730 src/pgenlib/pgenlib.cpp:13786:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,730 13786 | __pyx_t_8 = ((__pyx_t_10[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,731 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,747 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_13read_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,747 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,747 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,747 | ^ 2024-02-28T10:07:28,747 src/pgenlib/pgenlib.cpp:14081:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,747 14081 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,748 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,749 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,749 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,750 | ^ 2024-02-28T10:07:28,750 src/pgenlib/pgenlib.cpp:14083:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,750 14083 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,750 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,752 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,752 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,752 | ^ 2024-02-28T10:07:28,752 src/pgenlib/pgenlib.cpp:14085:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,752 14085 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,753 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,755 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,755 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,755 | ^ 2024-02-28T10:07:28,756 src/pgenlib/pgenlib.cpp:14098:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,756 14098 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,756 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,758 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,758 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,759 | ^ 2024-02-28T10:07:28,759 src/pgenlib/pgenlib.cpp:14108:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,759 14108 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,759 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,762 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,762 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,762 | ^ 2024-02-28T10:07:28,762 src/pgenlib/pgenlib.cpp:14123:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,762 14123 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,763 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,774 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, int)’: 2024-02-28T10:07:28,774 src/pgenlib/pgenlib.cpp:14378:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,774 14378 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,774 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,786 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_15read_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,786 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,786 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,786 | ^ 2024-02-28T10:07:28,786 src/pgenlib/pgenlib.cpp:14592:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,786 14592 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,787 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,788 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,789 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,789 | ^ 2024-02-28T10:07:28,789 src/pgenlib/pgenlib.cpp:14594:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,789 14594 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,789 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,792 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,792 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,792 | ^ 2024-02-28T10:07:28,792 src/pgenlib/pgenlib.cpp:14607:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,792 14607 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,793 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,806 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent(__pyx_obj_7pgenlib_PgenReader*, uint32_t, PyArrayObject*, PyArrayObject*, int)’: 2024-02-28T10:07:28,806 src/pgenlib/pgenlib.cpp:14900:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,806 14900 | __pyx_t_7 = ((__pyx_t_9[0]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:28,807 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,810 src/pgenlib/pgenlib.cpp:14958:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,810 14958 | __pyx_t_7 = ((__pyx_t_9[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,810 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,824 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_17read_alleles_and_phasepresent(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,824 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,824 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,824 | ^ 2024-02-28T10:07:28,824 src/pgenlib/pgenlib.cpp:15194:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,824 15194 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,824 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,826 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,827 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,827 | ^ 2024-02-28T10:07:28,827 src/pgenlib/pgenlib.cpp:15196:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,827 15196 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,827 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,829 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,829 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,830 | ^ 2024-02-28T10:07:28,830 src/pgenlib/pgenlib.cpp:15198:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,830 15198 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,830 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,833 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,833 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,833 | ^ 2024-02-28T10:07:28,833 src/pgenlib/pgenlib.cpp:15211:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,833 15211 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,833 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,836 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,836 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,836 | ^ 2024-02-28T10:07:28,837 src/pgenlib/pgenlib.cpp:15221:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,837 15221 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,837 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,847 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal8(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal8*)’: 2024-02-28T10:07:28,847 src/pgenlib/pgenlib.cpp:15501:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,847 15501 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:28,847 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,851 src/pgenlib/pgenlib.cpp:15559:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,851 15559 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T10:07:28,851 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,866 src/pgenlib/pgenlib.cpp:15786:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,867 15786 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,867 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,871 src/pgenlib/pgenlib.cpp:15844:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,871 15844 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:28,871 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,886 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal32(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal32*)’: 2024-02-28T10:07:28,886 src/pgenlib/pgenlib.cpp:16446:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,886 16446 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:28,886 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,890 src/pgenlib/pgenlib.cpp:16504:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,890 16504 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T10:07:28,890 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,899 src/pgenlib/pgenlib.cpp:16731:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,900 16731 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,900 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,903 src/pgenlib/pgenlib.cpp:16789:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,904 16789 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:28,904 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,919 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_range_internal64(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_range_internal64*)’: 2024-02-28T10:07:28,919 src/pgenlib/pgenlib.cpp:17391:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,919 17391 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:28,919 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,923 src/pgenlib/pgenlib.cpp:17449:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,923 17449 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T10:07:28,924 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,933 src/pgenlib/pgenlib.cpp:17676:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,933 17676 | __pyx_t_5 = ((__pyx_t_6[0]) < __pyx_v_subset_size); 2024-02-28T10:07:28,933 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,937 src/pgenlib/pgenlib.cpp:17734:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:28,937 17734 | __pyx_t_5 = ((__pyx_t_6[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:28,937 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,970 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_19read_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:28,970 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,970 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,970 | ^ 2024-02-28T10:07:28,970 src/pgenlib/pgenlib.cpp:18577:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,970 18577 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,971 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,973 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,973 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,973 | ^ 2024-02-28T10:07:28,973 src/pgenlib/pgenlib.cpp:18579:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,973 18579 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,974 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,976 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,976 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,976 | ^ 2024-02-28T10:07:28,976 src/pgenlib/pgenlib.cpp:18581:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,977 18581 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,977 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,979 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,979 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,980 | ^ 2024-02-28T10:07:28,980 src/pgenlib/pgenlib.cpp:18583:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,980 18583 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,980 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,982 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,983 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,983 | ^ 2024-02-28T10:07:28,983 src/pgenlib/pgenlib.cpp:18585:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,983 18585 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,983 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,986 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,986 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,987 | ^ 2024-02-28T10:07:28,987 src/pgenlib/pgenlib.cpp:18598:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,987 18598 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,987 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,990 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,990 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,991 | ^ 2024-02-28T10:07:28,991 src/pgenlib/pgenlib.cpp:18608:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,991 18608 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,991 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,994 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,994 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,994 | ^ 2024-02-28T10:07:28,995 src/pgenlib/pgenlib.cpp:18618:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,995 18618 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,995 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:28,998 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:28,998 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:28,998 | ^ 2024-02-28T10:07:28,998 src/pgenlib/pgenlib.cpp:18625:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:28,998 18625 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:28,998 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,002 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,002 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,002 | ^ 2024-02-28T10:07:29,002 src/pgenlib/pgenlib.cpp:18640:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,002 18640 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,003 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,005 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,005 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,005 | ^ 2024-02-28T10:07:29,006 src/pgenlib/pgenlib.cpp:18642:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,006 18642 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,006 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,014 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal8(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal8*)’: 2024-02-28T10:07:29,014 src/pgenlib/pgenlib.cpp:18911:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,014 18911 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,015 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,018 src/pgenlib/pgenlib.cpp:18969:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,018 18969 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,019 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,028 src/pgenlib/pgenlib.cpp:19212:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,029 19212 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2024-02-28T10:07:29,029 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,032 src/pgenlib/pgenlib.cpp:19270:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,032 19270 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,033 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,053 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal32*)’: 2024-02-28T10:07:29,053 src/pgenlib/pgenlib.cpp:19969:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,054 19969 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,054 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,057 src/pgenlib/pgenlib.cpp:20027:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,058 20027 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,058 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,068 src/pgenlib/pgenlib.cpp:20270:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,068 20270 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2024-02-28T10:07:29,068 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,072 src/pgenlib/pgenlib.cpp:20328:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,072 20328 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,072 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,093 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_list_internal64*)’: 2024-02-28T10:07:29,093 src/pgenlib/pgenlib.cpp:21027:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,093 21027 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,093 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,096 src/pgenlib/pgenlib.cpp:21085:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,097 21085 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,097 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,107 src/pgenlib/pgenlib.cpp:21328:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,107 21328 | __pyx_t_6 = ((__pyx_t_5[0]) < __pyx_v_subset_size); 2024-02-28T10:07:29,107 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,111 src/pgenlib/pgenlib.cpp:21386:31: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,111 21386 | __pyx_t_6 = ((__pyx_t_5[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,111 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,146 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_21read_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,146 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,146 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,146 | ^ 2024-02-28T10:07:29,146 src/pgenlib/pgenlib.cpp:22256:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,147 22256 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,147 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,150 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,150 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,150 | ^ 2024-02-28T10:07:29,150 src/pgenlib/pgenlib.cpp:22258:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,150 22258 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,150 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,154 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,154 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,154 | ^ 2024-02-28T10:07:29,154 src/pgenlib/pgenlib.cpp:22260:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,154 22260 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,154 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,157 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,158 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,158 | ^ 2024-02-28T10:07:29,158 src/pgenlib/pgenlib.cpp:22262:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,158 22262 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,158 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,162 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,162 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,162 | ^ 2024-02-28T10:07:29,163 src/pgenlib/pgenlib.cpp:22275:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,163 22275 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,163 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,167 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,167 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,167 | ^ 2024-02-28T10:07:29,167 src/pgenlib/pgenlib.cpp:22285:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,167 22285 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,167 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,171 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,171 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,171 | ^ 2024-02-28T10:07:29,171 src/pgenlib/pgenlib.cpp:22292:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,172 22292 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,172 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,176 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,176 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,176 | ^ 2024-02-28T10:07:29,176 src/pgenlib/pgenlib.cpp:22307:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,176 22307 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,176 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,180 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,180 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,180 | ^ 2024-02-28T10:07:29,180 src/pgenlib/pgenlib.cpp:22309:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,180 22309 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,181 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,195 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_range*)’: 2024-02-28T10:07:29,196 src/pgenlib/pgenlib.cpp:22729:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,196 22729 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,196 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,199 src/pgenlib/pgenlib.cpp:22787:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,200 22787 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:29,200 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,213 src/pgenlib/pgenlib.cpp:23026:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,213 23026 | __pyx_t_9 = ((__pyx_t_14[0]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:29,213 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,217 src/pgenlib/pgenlib.cpp:23084:32: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,217 23084 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,217 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,240 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_23read_alleles_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,240 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,241 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,241 | ^ 2024-02-28T10:07:29,241 src/pgenlib/pgenlib.cpp:23810:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,241 23810 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,241 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,244 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,245 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,245 | ^ 2024-02-28T10:07:29,245 src/pgenlib/pgenlib.cpp:23812:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,245 23812 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,245 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,249 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,249 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,249 | ^ 2024-02-28T10:07:29,249 src/pgenlib/pgenlib.cpp:23814:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,249 23814 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,249 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,253 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,253 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,253 | ^ 2024-02-28T10:07:29,253 src/pgenlib/pgenlib.cpp:23816:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,253 23816 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,254 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,257 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,258 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,258 | ^ 2024-02-28T10:07:29,258 src/pgenlib/pgenlib.cpp:23829:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,258 23829 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,258 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,262 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,263 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,263 | ^ 2024-02-28T10:07:29,263 src/pgenlib/pgenlib.cpp:23839:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,263 23839 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,263 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,267 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,267 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,268 | ^ 2024-02-28T10:07:29,268 src/pgenlib/pgenlib.cpp:23849:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,268 23849 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,268 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,272 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,273 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,273 | ^ 2024-02-28T10:07:29,273 src/pgenlib/pgenlib.cpp:23864:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,273 23864 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,273 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,285 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_list*)’: 2024-02-28T10:07:29,285 src/pgenlib/pgenlib.cpp:24238:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,286 24238 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,286 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,289 src/pgenlib/pgenlib.cpp:24296:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,289 24296 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:29,289 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,300 src/pgenlib/pgenlib.cpp:24539:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,300 24539 | __pyx_t_12 = ((__pyx_t_11[0]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:29,300 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,304 src/pgenlib/pgenlib.cpp:24597:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,304 24597 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,304 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,329 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_25read_alleles_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,330 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,330 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,330 | ^ 2024-02-28T10:07:29,330 src/pgenlib/pgenlib.cpp:25364:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,330 25364 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,330 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,334 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,334 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,334 | ^ 2024-02-28T10:07:29,334 src/pgenlib/pgenlib.cpp:25366:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,335 25366 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,335 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,338 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,339 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,339 | ^ 2024-02-28T10:07:29,339 src/pgenlib/pgenlib.cpp:25368:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,339 25368 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,339 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,343 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,344 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,344 | ^ 2024-02-28T10:07:29,344 src/pgenlib/pgenlib.cpp:25381:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,344 25381 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,344 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,348 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,349 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,349 | ^ 2024-02-28T10:07:29,349 src/pgenlib/pgenlib.cpp:25391:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,349 25391 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,349 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,354 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,354 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,354 | ^ 2024-02-28T10:07:29,355 src/pgenlib/pgenlib.cpp:25406:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,355 25406 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,355 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,371 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range(__pyx_obj_7pgenlib_PgenReader*, uint32_t, uint32_t, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_range*)’: 2024-02-28T10:07:29,371 src/pgenlib/pgenlib.cpp:25781:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,371 25781 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,371 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,374 src/pgenlib/pgenlib.cpp:25839:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,375 25839 | __pyx_t_9 = ((__pyx_t_14[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,375 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,379 src/pgenlib/pgenlib.cpp:25897:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,379 25897 | __pyx_t_9 = ((__pyx_t_14[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:29,379 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,383 src/pgenlib/pgenlib.cpp:25955:34: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,383 25955 | __pyx_t_9 = ((__pyx_t_14[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,383 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,403 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_27read_alleles_and_phasepresent_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,403 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,403 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,403 | ^ 2024-02-28T10:07:29,403 src/pgenlib/pgenlib.cpp:26246:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,403 26246 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,403 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,407 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,407 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,407 | ^ 2024-02-28T10:07:29,408 src/pgenlib/pgenlib.cpp:26248:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,408 26248 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,408 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,412 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,412 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,412 | ^ 2024-02-28T10:07:29,412 src/pgenlib/pgenlib.cpp:26250:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,412 26250 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,412 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,416 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,416 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,416 | ^ 2024-02-28T10:07:29,416 src/pgenlib/pgenlib.cpp:26252:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,417 26252 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,417 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,420 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,421 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,421 | ^ 2024-02-28T10:07:29,421 src/pgenlib/pgenlib.cpp:26254:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,421 26254 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,421 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,426 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,426 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,426 | ^ 2024-02-28T10:07:29,426 src/pgenlib/pgenlib.cpp:26267:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,426 26267 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,426 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,431 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,431 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,431 | ^ 2024-02-28T10:07:29,431 src/pgenlib/pgenlib.cpp:26277:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,431 26277 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,431 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,436 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,436 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,436 | ^ 2024-02-28T10:07:29,436 src/pgenlib/pgenlib.cpp:26287:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,437 26287 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,437 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,441 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,441 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,441 | ^ 2024-02-28T10:07:29,442 src/pgenlib/pgenlib.cpp:26297:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,442 26297 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,442 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,446 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,447 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,447 | ^ 2024-02-28T10:07:29,447 src/pgenlib/pgenlib.cpp:26312:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,447 26312 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,447 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,462 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, PyArrayObject*, int, __pyx_opt_args_7pgenlib_10PgenReader_read_alleles_and_phasepresent_list*)’: 2024-02-28T10:07:29,462 src/pgenlib/pgenlib.cpp:26684:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,463 26684 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,463 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,466 src/pgenlib/pgenlib.cpp:26742:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,466 26742 | __pyx_t_12 = ((__pyx_t_11[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,466 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,470 src/pgenlib/pgenlib.cpp:26800:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,470 26800 | __pyx_t_12 = ((__pyx_t_11[1]) < (2 * __pyx_v_subset_size)); 2024-02-28T10:07:29,470 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,474 src/pgenlib/pgenlib.cpp:26858:35: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,474 26858 | __pyx_t_12 = ((__pyx_t_11[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,474 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,496 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_29read_alleles_and_phasepresent_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,496 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,497 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,497 | ^ 2024-02-28T10:07:29,497 src/pgenlib/pgenlib.cpp:27208:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,497 27208 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,497 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,501 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,501 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,502 | ^ 2024-02-28T10:07:29,502 src/pgenlib/pgenlib.cpp:27210:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,502 27210 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,502 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,506 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,507 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,507 | ^ 2024-02-28T10:07:29,507 src/pgenlib/pgenlib.cpp:27212:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,507 27212 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,507 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,511 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,512 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,512 | ^ 2024-02-28T10:07:29,512 src/pgenlib/pgenlib.cpp:27214:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,512 27214 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,512 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,517 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,517 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,517 | ^ 2024-02-28T10:07:29,518 src/pgenlib/pgenlib.cpp:27227:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,518 27227 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,518 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,522 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,523 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,523 | ^ 2024-02-28T10:07:29,523 src/pgenlib/pgenlib.cpp:27237:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,523 27237 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,523 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,528 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,528 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,528 | ^ 2024-02-28T10:07:29,528 src/pgenlib/pgenlib.cpp:27247:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,528 27247 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,528 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,533 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,534 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,534 | ^ 2024-02-28T10:07:29,534 src/pgenlib/pgenlib.cpp:27262:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,534 27262 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,534 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,575 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_31read_dosages_range(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,575 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,576 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,576 | ^ 2024-02-28T10:07:29,576 src/pgenlib/pgenlib.cpp:28357:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,576 28357 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,576 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,580 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,580 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,580 | ^ 2024-02-28T10:07:29,581 src/pgenlib/pgenlib.cpp:28359:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,581 28359 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,581 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,585 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,585 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,585 | ^ 2024-02-28T10:07:29,585 src/pgenlib/pgenlib.cpp:28361:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,586 28361 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,586 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,590 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,590 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,590 | ^ 2024-02-28T10:07:29,590 src/pgenlib/pgenlib.cpp:28363:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,590 28363 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,591 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,595 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,595 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,595 | ^ 2024-02-28T10:07:29,595 src/pgenlib/pgenlib.cpp:28365:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,595 28365 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,596 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,600 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,601 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,601 | ^ 2024-02-28T10:07:29,601 src/pgenlib/pgenlib.cpp:28378:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,601 28378 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,601 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,606 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,606 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,606 | ^ 2024-02-28T10:07:29,606 src/pgenlib/pgenlib.cpp:28388:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,606 28388 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,607 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,611 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,612 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,612 | ^ 2024-02-28T10:07:29,612 src/pgenlib/pgenlib.cpp:28398:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,612 28398 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,612 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,617 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,617 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,617 | ^ 2024-02-28T10:07:29,617 src/pgenlib/pgenlib.cpp:28405:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,617 28405 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,617 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,623 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,623 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,623 | ^ 2024-02-28T10:07:29,623 src/pgenlib/pgenlib.cpp:28420:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,623 28420 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,623 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,627 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,628 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,628 | ^ 2024-02-28T10:07:29,628 src/pgenlib/pgenlib.cpp:28422:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,628 28422 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,628 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,636 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal32(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal32*)’: 2024-02-28T10:07:29,637 src/pgenlib/pgenlib.cpp:28693:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,637 28693 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,637 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,641 src/pgenlib/pgenlib.cpp:28751:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,641 28751 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,641 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,658 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_f_7pgenlib_10PgenReader_read_dosages_list_internal64(__pyx_obj_7pgenlib_PgenReader*, PyArrayObject*, PyArrayObject*, __pyx_opt_args_7pgenlib_10PgenReader_read_dosages_list_internal64*)’: 2024-02-28T10:07:29,658 src/pgenlib/pgenlib.cpp:29216:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,658 29216 | __pyx_t_7 = ((__pyx_t_6[0]) < __pyx_v_variant_idx_ct); 2024-02-28T10:07:29,659 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,662 src/pgenlib/pgenlib.cpp:29274:33: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-02-28T10:07:29,662 29274 | __pyx_t_7 = ((__pyx_t_6[1]) < __pyx_v_subset_size); 2024-02-28T10:07:29,663 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,694 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_33read_dosages_list(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,694 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,694 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,694 | ^ 2024-02-28T10:07:29,694 src/pgenlib/pgenlib.cpp:29862:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,694 29862 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,694 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,699 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,699 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,699 | ^ 2024-02-28T10:07:29,699 src/pgenlib/pgenlib.cpp:29864:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,699 29864 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,699 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,704 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,704 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,704 | ^ 2024-02-28T10:07:29,704 src/pgenlib/pgenlib.cpp:29866:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,704 29866 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,704 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,709 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,709 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,709 | ^ 2024-02-28T10:07:29,709 src/pgenlib/pgenlib.cpp:29868:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,710 29868 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,710 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,715 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,715 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,715 | ^ 2024-02-28T10:07:29,715 src/pgenlib/pgenlib.cpp:29881:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,715 29881 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,715 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,720 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,721 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,721 | ^ 2024-02-28T10:07:29,721 src/pgenlib/pgenlib.cpp:29891:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,721 29891 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,721 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,726 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,726 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,726 | ^ 2024-02-28T10:07:29,727 src/pgenlib/pgenlib.cpp:29898:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,727 29898 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,727 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,732 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,732 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,732 | ^ 2024-02-28T10:07:29,733 src/pgenlib/pgenlib.cpp:29913:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,733 29913 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,733 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,737 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,737 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,738 | ^ 2024-02-28T10:07:29,738 src/pgenlib/pgenlib.cpp:29915:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,738 29915 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,738 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,777 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_35count(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,777 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,777 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,777 | ^ 2024-02-28T10:07:29,777 src/pgenlib/pgenlib.cpp:31054:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,777 31054 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,778 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,782 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,782 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,782 | ^ 2024-02-28T10:07:29,783 src/pgenlib/pgenlib.cpp:31056:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,783 31056 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,783 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,787 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,788 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,788 | ^ 2024-02-28T10:07:29,788 src/pgenlib/pgenlib.cpp:31058:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,788 31058 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,788 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,794 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,794 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,794 | ^ 2024-02-28T10:07:29,794 src/pgenlib/pgenlib.cpp:31071:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,794 31071 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,794 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,800 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,800 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,800 | ^ 2024-02-28T10:07:29,800 src/pgenlib/pgenlib.cpp:31081:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,801 31081 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,801 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,806 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,806 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,807 | ^ 2024-02-28T10:07:29,807 src/pgenlib/pgenlib.cpp:31096:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,807 31096 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,807 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,822 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_37change_sample_subset(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,822 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,823 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,823 | ^ 2024-02-28T10:07:29,823 src/pgenlib/pgenlib.cpp:31409:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,823 31409 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,823 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,829 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,829 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,829 | ^ 2024-02-28T10:07:29,829 src/pgenlib/pgenlib.cpp:31429:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,829 31429 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,830 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,850 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_41__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,850 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,850 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,850 | ^ 2024-02-28T10:07:29,851 src/pgenlib/pgenlib.cpp:32100:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,851 32100 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,851 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,856 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,856 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,856 | ^ 2024-02-28T10:07:29,856 src/pgenlib/pgenlib.cpp:32102:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,856 32102 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,856 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,861 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,861 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,861 | ^ 2024-02-28T10:07:29,862 src/pgenlib/pgenlib.cpp:32104:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,862 32104 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,862 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,867 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,868 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,868 | ^ 2024-02-28T10:07:29,868 src/pgenlib/pgenlib.cpp:32117:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,868 32117 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,868 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,874 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,874 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,874 | ^ 2024-02-28T10:07:29,874 src/pgenlib/pgenlib.cpp:32127:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,874 32127 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,874 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,886 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenReader_47__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:29,886 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,887 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,887 | ^ 2024-02-28T10:07:29,887 src/pgenlib/pgenlib.cpp:32577:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,887 32577 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,887 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,898 src/pgenlib/pgenlib.cpp: In function ‘int __pyx_pw_7pgenlib_10PgenWriter_1__cinit__(PyObject*, PyObject*, PyObject*)’: 2024-02-28T10:07:29,898 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,898 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,899 | ^ 2024-02-28T10:07:29,899 src/pgenlib/pgenlib.cpp:32790:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,899 32790 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,899 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,904 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,904 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,904 | ^ 2024-02-28T10:07:29,904 src/pgenlib/pgenlib.cpp:32792:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,905 32792 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,905 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,910 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,910 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,910 | ^ 2024-02-28T10:07:29,910 src/pgenlib/pgenlib.cpp:32794:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,910 32794 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,911 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,916 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,916 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,916 | ^ 2024-02-28T10:07:29,916 src/pgenlib/pgenlib.cpp:32796:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,916 32796 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,916 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,922 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,922 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,922 | ^ 2024-02-28T10:07:29,922 src/pgenlib/pgenlib.cpp:32798:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,922 32798 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,922 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,927 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,928 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,928 | ^ 2024-02-28T10:07:29,928 src/pgenlib/pgenlib.cpp:32800:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,928 32800 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,928 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,933 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,934 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,934 | ^ 2024-02-28T10:07:29,934 src/pgenlib/pgenlib.cpp:32802:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,934 32802 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,934 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,939 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,939 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,940 | ^ 2024-02-28T10:07:29,940 src/pgenlib/pgenlib.cpp:32804:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,940 32804 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,940 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,945 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,945 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,946 | ^ 2024-02-28T10:07:29,946 src/pgenlib/pgenlib.cpp:32806:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,946 32806 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,946 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,952 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,952 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,952 | ^ 2024-02-28T10:07:29,952 src/pgenlib/pgenlib.cpp:32819:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,952 32819 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,953 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,958 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,959 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,959 | ^ 2024-02-28T10:07:29,959 src/pgenlib/pgenlib.cpp:32829:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,959 32829 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,959 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,964 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,965 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,965 | ^ 2024-02-28T10:07:29,965 src/pgenlib/pgenlib.cpp:32836:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,965 32836 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,965 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,971 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,971 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,971 | ^ 2024-02-28T10:07:29,971 src/pgenlib/pgenlib.cpp:32843:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,971 32843 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,972 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,977 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,977 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,978 | ^ 2024-02-28T10:07:29,978 src/pgenlib/pgenlib.cpp:32850:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,978 32850 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,978 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,983 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,984 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,984 | ^ 2024-02-28T10:07:29,984 src/pgenlib/pgenlib.cpp:32857:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,984 32857 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,984 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,990 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,990 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,990 | ^ 2024-02-28T10:07:29,990 src/pgenlib/pgenlib.cpp:32864:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,990 32864 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,991 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:29,996 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:29,996 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:29,997 | ^ 2024-02-28T10:07:29,997 src/pgenlib/pgenlib.cpp:32871:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:29,997 32871 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:29,997 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,003 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,003 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,003 | ^ 2024-02-28T10:07:30,003 src/pgenlib/pgenlib.cpp:32886:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,003 32886 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,003 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,008 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,009 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,009 | ^ 2024-02-28T10:07:30,009 src/pgenlib/pgenlib.cpp:32888:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,009 32888 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,009 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,014 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,014 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,014 | ^ 2024-02-28T10:07:30,014 src/pgenlib/pgenlib.cpp:32890:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,014 32890 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,015 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,019 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,020 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,020 | ^ 2024-02-28T10:07:30,020 src/pgenlib/pgenlib.cpp:32892:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,020 32892 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,020 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,025 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,025 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,025 | ^ 2024-02-28T10:07:30,026 src/pgenlib/pgenlib.cpp:32894:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,026 32894 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,026 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,031 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,031 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,031 | ^ 2024-02-28T10:07:30,031 src/pgenlib/pgenlib.cpp:32896:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,031 32896 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,031 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,036 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,037 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,037 | ^ 2024-02-28T10:07:30,037 src/pgenlib/pgenlib.cpp:32898:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,037 32898 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,037 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,076 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_5append_biallelic(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,077 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,077 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,077 | ^ 2024-02-28T10:07:30,077 src/pgenlib/pgenlib.cpp:34370:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,077 34370 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,077 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,103 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_7append_alleles(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,104 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,104 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,104 | ^ 2024-02-28T10:07:30,104 src/pgenlib/pgenlib.cpp:35193:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,104 35193 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,104 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,109 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,110 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,110 | ^ 2024-02-28T10:07:30,110 src/pgenlib/pgenlib.cpp:35195:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,110 35195 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,110 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,115 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,116 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,116 | ^ 2024-02-28T10:07:30,116 src/pgenlib/pgenlib.cpp:35197:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,116 35197 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,116 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,122 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,122 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,123 | ^ 2024-02-28T10:07:30,123 src/pgenlib/pgenlib.cpp:35210:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,123 35210 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,123 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,129 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,129 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,129 | ^ 2024-02-28T10:07:30,129 src/pgenlib/pgenlib.cpp:35217:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,129 35217 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,130 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,136 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,136 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,136 | ^ 2024-02-28T10:07:30,136 src/pgenlib/pgenlib.cpp:35232:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,137 35232 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,137 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,142 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,142 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,143 | ^ 2024-02-28T10:07:30,143 src/pgenlib/pgenlib.cpp:35234:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,143 35234 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,143 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,170 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_9append_partially_phased(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,170 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,170 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,170 | ^ 2024-02-28T10:07:30,170 src/pgenlib/pgenlib.cpp:35986:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,170 35986 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,171 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,176 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,176 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,176 | ^ 2024-02-28T10:07:30,176 src/pgenlib/pgenlib.cpp:35988:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,176 35988 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,176 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,182 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,182 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,182 | ^ 2024-02-28T10:07:30,182 src/pgenlib/pgenlib.cpp:35990:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,183 35990 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,183 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,189 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,189 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,189 | ^ 2024-02-28T10:07:30,189 src/pgenlib/pgenlib.cpp:36003:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,189 36003 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,189 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,195 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,196 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,196 | ^ 2024-02-28T10:07:30,196 src/pgenlib/pgenlib.cpp:36013:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,196 36013 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,196 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,202 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,203 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,203 | ^ 2024-02-28T10:07:30,203 src/pgenlib/pgenlib.cpp:36028:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,203 36028 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,203 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,235 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_11append_dosages(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,235 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,236 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,236 | ^ 2024-02-28T10:07:30,236 src/pgenlib/pgenlib.cpp:36781:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,236 36781 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,236 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,255 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_13append_biallelic_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,255 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,256 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,256 | ^ 2024-02-28T10:07:30,256 src/pgenlib/pgenlib.cpp:37156:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,256 37156 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,256 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,291 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_15append_alleles_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,291 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,292 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,292 | ^ 2024-02-28T10:07:30,292 src/pgenlib/pgenlib.cpp:38238:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,292 38238 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,292 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,298 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,298 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,298 | ^ 2024-02-28T10:07:30,298 src/pgenlib/pgenlib.cpp:38240:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,298 38240 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,298 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,304 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,305 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,305 | ^ 2024-02-28T10:07:30,305 src/pgenlib/pgenlib.cpp:38242:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,305 38242 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,305 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,311 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,312 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,312 | ^ 2024-02-28T10:07:30,312 src/pgenlib/pgenlib.cpp:38255:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,312 38255 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,312 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,318 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,319 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,319 | ^ 2024-02-28T10:07:30,319 src/pgenlib/pgenlib.cpp:38262:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,319 38262 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,319 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,326 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,326 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,326 | ^ 2024-02-28T10:07:30,327 src/pgenlib/pgenlib.cpp:38277:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,327 38277 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,327 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,333 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,333 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,333 | ^ 2024-02-28T10:07:30,333 src/pgenlib/pgenlib.cpp:38279:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,333 38279 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,333 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,362 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_17append_partially_phased_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,363 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,363 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,363 | ^ 2024-02-28T10:07:30,363 src/pgenlib/pgenlib.cpp:39068:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,363 39068 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,363 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,369 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,369 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,369 | ^ 2024-02-28T10:07:30,369 src/pgenlib/pgenlib.cpp:39070:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,370 39070 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,370 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,376 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,376 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,376 | ^ 2024-02-28T10:07:30,376 src/pgenlib/pgenlib.cpp:39072:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,376 39072 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,376 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,383 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,383 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,383 | ^ 2024-02-28T10:07:30,383 src/pgenlib/pgenlib.cpp:39085:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,384 39085 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,384 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,390 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,390 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,391 | ^ 2024-02-28T10:07:30,391 src/pgenlib/pgenlib.cpp:39095:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,391 39095 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,391 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,398 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,398 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,398 | ^ 2024-02-28T10:07:30,398 src/pgenlib/pgenlib.cpp:39110:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,398 39110 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,399 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,434 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_19append_dosages_batch(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,434 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,434 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,434 | ^ 2024-02-28T10:07:30,434 src/pgenlib/pgenlib.cpp:39927:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,434 39927 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,435 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,474 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_23__exit__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,475 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,475 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,475 | ^ 2024-02-28T10:07:30,475 src/pgenlib/pgenlib.cpp:40544:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,475 40544 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,475 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,481 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,482 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,482 | ^ 2024-02-28T10:07:30,482 src/pgenlib/pgenlib.cpp:40546:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,482 40546 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,482 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,489 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,489 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,489 | ^ 2024-02-28T10:07:30,489 src/pgenlib/pgenlib.cpp:40548:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,489 40548 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,489 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,496 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,497 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,497 | ^ 2024-02-28T10:07:30,497 src/pgenlib/pgenlib.cpp:40561:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,497 40561 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,497 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,504 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,505 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,505 | ^ 2024-02-28T10:07:30,505 src/pgenlib/pgenlib.cpp:40571:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,505 40571 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,505 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,520 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __pyx_pw_7pgenlib_10PgenWriter_29__setstate_cython__(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2024-02-28T10:07:30,520 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,520 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,520 | ^ 2024-02-28T10:07:30,521 src/pgenlib/pgenlib.cpp:40982:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,521 40982 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,521 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,703 src/pgenlib/pgenlib.cpp: In function ‘const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context*, const char*)’: 2024-02-28T10:07:30,703 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,703 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,703 | ^ 2024-02-28T10:07:30,703 src/pgenlib/pgenlib.cpp:46069:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,703 46069 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,703 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,711 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,711 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,712 | ^ 2024-02-28T10:07:30,712 src/pgenlib/pgenlib.cpp:46082:9: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,712 46082 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,712 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,725 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_MultiplyCObj(PyObject*, PyObject*, long int, int, int)’: 2024-02-28T10:07:30,725 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,725 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,725 | ^ 2024-02-28T10:07:30,725 src/pgenlib/pgenlib.cpp:46210:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,726 46210 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,726 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,733 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,734 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,734 | ^ 2024-02-28T10:07:30,734 src/pgenlib/pgenlib.cpp:46221:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,734 46221 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,734 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,742 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,742 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,742 | ^ 2024-02-28T10:07:30,743 src/pgenlib/pgenlib.cpp:46232:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,743 46232 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,743 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,750 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,751 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,751 | ^ 2024-02-28T10:07:30,751 src/pgenlib/pgenlib.cpp:46243:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,751 46243 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,751 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,759 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,759 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,759 | ^ 2024-02-28T10:07:30,759 src/pgenlib/pgenlib.cpp:46254:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,759 46254 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,759 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,767 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,767 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,767 | ^ 2024-02-28T10:07:30,768 src/pgenlib/pgenlib.cpp:46265:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,768 46265 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,768 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,782 src/pgenlib/pgenlib.cpp: In function ‘PyObject* __Pyx_PyInt_AddObjC(PyObject*, PyObject*, long int, int, int)’: 2024-02-28T10:07:30,782 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,782 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,782 | ^ 2024-02-28T10:07:30,782 src/pgenlib/pgenlib.cpp:46443:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,782 46443 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,782 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,790 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,790 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,790 | ^ 2024-02-28T10:07:30,790 src/pgenlib/pgenlib.cpp:46454:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,790 46454 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,790 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,798 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,798 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,798 | ^ 2024-02-28T10:07:30,799 src/pgenlib/pgenlib.cpp:46465:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,799 46465 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,799 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,806 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,807 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,807 | ^ 2024-02-28T10:07:30,807 src/pgenlib/pgenlib.cpp:46476:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,807 46476 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,807 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,815 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,815 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,815 | ^ 2024-02-28T10:07:30,815 src/pgenlib/pgenlib.cpp:46487:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,815 46487 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,816 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:07:30,823 src/pgenlib/pgenlib.cpp:561:55: warning: c++11 attributes only available with ‘-std=c++11’ or ‘-std=gnu++11’ 2024-02-28T10:07:30,824 561 | #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] 2024-02-28T10:07:30,824 | ^ 2024-02-28T10:07:30,824 src/pgenlib/pgenlib.cpp:46498:21: note: in expansion of macro ‘CYTHON_FALLTHROUGH’ 2024-02-28T10:07:30,824 46498 | CYTHON_FALLTHROUGH; 2024-02-28T10:07:30,824 | ^~~~~~~~~~~~~~~~~~ 2024-02-28T10:08:18,651 At global scope: 2024-02-28T10:08:18,651 cc1plus: note: unrecognized command-line option ‘-Wno-macro-redefined’ may have been intended to silence earlier diagnostics 2024-02-28T10:08:21,804 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_misc.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:25,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_read.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:38,984 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/pgenlib_write.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:42,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_base.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:42,809 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_bgzf.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:44,151 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_bits.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:45,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_string.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:51,647 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_text.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:53,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_thread.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:53,820 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/include/plink2_zstfile.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:54,190 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/pgenlib_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:55,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pgenlib -I/tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include -Isrc/plink2/libdeflate -I/usr/include/python3.9 -c src/plink2/pvar_ffi_support.cc -o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -std=c++98 -Wno-unused-function -Wno-macro-redefined -DZSTD_DISABLE_ASM -DLIBDEFLATE_STATIC 2024-02-28T10:08:56,699 creating build/lib.linux-armv7l-cpython-39 2024-02-28T10:08:56,701 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pgenlib/pgenlib.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_misc.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_read.o build/temp.linux-armv7l-cpython-39/src/plink2/include/pgenlib_write.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_base.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bgzf.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_bits.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_string.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_text.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_thread.o build/temp.linux-armv7l-cpython-39/src/plink2/include/plink2_zstfile.o build/temp.linux-armv7l-cpython-39/src/plink2/pgenlib_ffi_support.o build/temp.linux-armv7l-cpython-39/src/plink2/pvar_ffi_support.o -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-39 -lclib -o build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -std=c++98 -lz 2024-02-28T10:08:57,420 installing to build/bdist.linux-armv7l/wheel 2024-02-28T10:08:57,421 running install 2024-02-28T10:08:57,448 running install_lib 2024-02-28T10:08:57,456 creating build/bdist.linux-armv7l 2024-02-28T10:08:57,457 creating build/bdist.linux-armv7l/wheel 2024-02-28T10:08:57,459 copying build/lib.linux-armv7l-cpython-39/pgenlib.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-02-28T10:08:57,661 running install_egg_info 2024-02-28T10:08:57,672 running egg_info 2024-02-28T10:08:57,680 writing src/Pgenlib.egg-info/PKG-INFO 2024-02-28T10:08:57,683 writing dependency_links to src/Pgenlib.egg-info/dependency_links.txt 2024-02-28T10:08:57,685 writing top-level names to src/Pgenlib.egg-info/top_level.txt 2024-02-28T10:08:57,689 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:08:57,689 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:08:57,689 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:08:57,689 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:08:57,689 dependency /tmp/pip-build-env-41u1dvxl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-02-28T10:08:57,703 reading manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:08:57,750 reading manifest template 'MANIFEST.in' 2024-02-28T10:08:57,765 adding license file 'LICENSE' 2024-02-28T10:08:57,782 writing manifest file 'src/Pgenlib.egg-info/SOURCES.txt' 2024-02-28T10:08:57,784 Copying src/Pgenlib.egg-info to build/bdist.linux-armv7l/wheel/Pgenlib-0.90.2-py3.9.egg-info 2024-02-28T10:08:57,797 running install_scripts 2024-02-28T10:08:57,840 creating build/bdist.linux-armv7l/wheel/Pgenlib-0.90.2.dist-info/WHEEL 2024-02-28T10:08:57,843 creating '/tmp/pip-wheel-9pxlxac2/.tmp-wuqzd_f2/Pgenlib-0.90.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-28T10:08:58,968 adding 'pgenlib.cpython-39-arm-linux-gnueabihf.so' 2024-02-28T10:08:59,007 adding 'Pgenlib-0.90.2.dist-info/LICENSE' 2024-02-28T10:08:59,008 adding 'Pgenlib-0.90.2.dist-info/METADATA' 2024-02-28T10:08:59,009 adding 'Pgenlib-0.90.2.dist-info/WHEEL' 2024-02-28T10:08:59,011 adding 'Pgenlib-0.90.2.dist-info/top_level.txt' 2024-02-28T10:08:59,012 adding 'Pgenlib-0.90.2.dist-info/RECORD' 2024-02-28T10:08:59,085 removing build/bdist.linux-armv7l/wheel 2024-02-28T10:08:59,248 Building wheel for pgenlib (pyproject.toml): finished with status 'done' 2024-02-28T10:08:59,298 Created wheel for pgenlib: filename=Pgenlib-0.90.2-cp39-cp39-linux_armv7l.whl size=2127562 sha256=7d383e400d5a0721a1a01f4cda765e0d89528d6693c8743541d04f3957752392 2024-02-28T10:08:59,299 Stored in directory: /tmp/pip-ephem-wheel-cache-9u3mzkqr/wheels/ae/22/d9/0528a9aec5aa85559556c2256268cba4ca9d3a2b00a4bf1b1a 2024-02-28T10:08:59,313 Successfully built pgenlib 2024-02-28T10:08:59,402 Removed build tracker: '/tmp/pip-build-tracker-7v56rgl1'