2024-02-28T14:27:17,392 Created temporary directory: /tmp/pip-build-tracker-kr0z51ro 2024-02-28T14:27:17,393 Initialized build tracking at /tmp/pip-build-tracker-kr0z51ro 2024-02-28T14:27:17,393 Created build tracker: /tmp/pip-build-tracker-kr0z51ro 2024-02-28T14:27:17,394 Entered build tracker: /tmp/pip-build-tracker-kr0z51ro 2024-02-28T14:27:17,394 Created temporary directory: /tmp/pip-wheel-phiuc5wp 2024-02-28T14:27:17,397 Created temporary directory: /tmp/pip-ephem-wheel-cache-b177w0ef 2024-02-28T14:27:17,420 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T14:27:17,424 2 location(s) to search for versions of multiqc: 2024-02-28T14:27:17,424 * https://pypi.org/simple/multiqc/ 2024-02-28T14:27:17,424 * https://www.piwheels.org/simple/multiqc/ 2024-02-28T14:27:17,425 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2024-02-28T14:27:17,425 Getting page https://pypi.org/simple/multiqc/ 2024-02-28T14:27:17,427 Found index url https://pypi.org/simple/ 2024-02-28T14:27:17,637 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2024-02-28T14:27:17,647 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2024-02-28T14:27:17,647 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2024-02-28T14:27:17,648 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2024-02-28T14:27:17,649 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2024-02-28T14:27:17,649 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2024-02-28T14:27:17,650 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2024-02-28T14:27:17,651 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2024-02-28T14:27:17,652 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2024-02-28T14:27:17,652 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2024-02-28T14:27:17,653 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2024-02-28T14:27:17,654 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2024-02-28T14:27:17,654 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2024-02-28T14:27:17,655 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2024-02-28T14:27:17,656 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2024-02-28T14:27:17,657 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2024-02-28T14:27:17,657 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2024-02-28T14:27:17,658 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2024-02-28T14:27:17,658 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2024-02-28T14:27:17,659 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.7 2024-02-28T14:27:17,660 Found link https://files.pythonhosted.org/packages/d3/4b/1cf18ef697e5daa72dfa55d496167354e6ec7d78e87c696a52f338c2dc63/multiqc-1.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.8 2024-02-28T14:27:17,660 Found link https://files.pythonhosted.org/packages/c8/2d/f0a6be15f861c5d165726d7afecd823ca158dff530b566379623a0e4534b/multiqc-1.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.9 2024-02-28T14:27:17,661 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/35/e5/dfccaa54058f2f5d2a83176bfee12ca65d631dba5dadda2a0c52ce25c45f/multiqc-1.10-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,661 Found link https://files.pythonhosted.org/packages/4e/39/cd87ee0581ead995b561635106d47cc9593687a76db9745a093d09fff1d9/multiqc-1.10.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10 2024-02-28T14:27:17,662 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/87/80/2e648984b8080fd65cb7c8eaa948a90ce74e8391828e6f7bdd4d0d137242/multiqc-1.10.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,662 Found link https://files.pythonhosted.org/packages/ca/e7/549a185924157e427b951ac741c1312ee4b324be9585ad323617bb3077a4/multiqc-1.10.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10.1 2024-02-28T14:27:17,663 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/2e/2a/4332775300481391ea5a7a1f35406f83f5812a2734eff5987c462c7e1ec7/multiqc-1.11-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,663 Found link https://files.pythonhosted.org/packages/22/23/3f94ffb423762201bcccf0e0cbf821fccf75673a9fedfb3e7c7ea491024d/multiqc-1.11.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.11 2024-02-28T14:27:17,664 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/08/74/23d79b7df154d5742e5b25b9cdf3cc352445290d90c7cc5fb770ba9911a4/multiqc-1.12-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,665 Found link https://files.pythonhosted.org/packages/6a/f0/122025f4521fd085c07d7a706f08819b4c6bed9e62cfe99453f8c5968ab9/multiqc-1.12.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.12 2024-02-28T14:27:17,665 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/1a/37/35f769e2be82ba3760a62a1cb39af42beee5334efa40cc7e151626e03c91/multiqc-1.13-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,666 Found link https://files.pythonhosted.org/packages/7b/cd/cbd2df3bf899f79ec4b20d5807262dfd3b6ce02245e852ece8dcdad250b1/multiqc-1.13.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.13 2024-02-28T14:27:17,666 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/11/4c/0f85a278cd37406f195115e38281478e9933c50f389b7c4d989af42cb9d1/multiqc-1.14-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,667 Found link https://files.pythonhosted.org/packages/ae/bb/3cb9d23ba28eb96a479161230626e3a11a04fc99899ac341ec949bc38bcb/multiqc-1.14.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.14 2024-02-28T14:27:17,668 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/cd/ef0884f0abb38c9662b11f212f463cdb022ef504c512719ccf13d4c728eb/multiqc-1.15-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,668 Found link https://files.pythonhosted.org/packages/ff/96/4ea623b57fef48f6b6c0a89757d53f7b4482b1ab950501617177d5c4a979/multiqc-1.15.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.15 2024-02-28T14:27:17,669 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,669 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2024-02-28T14:27:17,670 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,670 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2024-02-28T14:27:17,671 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,671 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2024-02-28T14:27:17,672 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,672 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2024-02-28T14:27:17,673 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2024-02-28T14:27:17,673 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2024-02-28T14:27:17,674 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2024-02-28T14:27:17,675 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2024-02-28T14:27:17,676 Fetching project page and analyzing links: https://www.piwheels.org/simple/multiqc/ 2024-02-28T14:27:17,676 Getting page https://www.piwheels.org/simple/multiqc/ 2024-02-28T14:27:17,678 Found index url https://www.piwheels.org/simple/ 2024-02-28T14:27:18,065 Fetched page https://www.piwheels.org/simple/multiqc/ as text/html 2024-02-28T14:27:18,074 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.20-py3-none-any.whl#sha256=761b9ace340a048c13c61645e020f0afe3284e1d4bace8fca65fc45c560ccd12 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,075 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.19-py3-none-any.whl#sha256=95392f476f57d4e6409a8840c07548b80fa1ad6a914ec4fd1f0d5ba4674c1f4b (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,076 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.18-py3-none-any.whl#sha256=6571d2a944e15103a4d824a1bada8a8d1d11a5369665b0bcebd80bdb402dac7a (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,076 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.17-py3-none-any.whl#sha256=3dc28a2d049c186d903291a1db4451f0a5a8fef09e66e057baf0acd6179e6263 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,077 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.16-py3-none-any.whl#sha256=03cca6a0517a1d55a342d26623de81f9cac003da50a6fe2e9e8450ce798ec2fa (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,077 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.15-py3-none-any.whl#sha256=b8e2124a3861980ad09b76cddb6765026adbbccf6744750bede1e09f8a938cb5 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,077 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.14-py3-none-any.whl#sha256=77b5c82fcefdd31644526d308c1eb7b7089ad0603a489df6c628cfe8643aa301 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,078 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.13-py3-none-any.whl#sha256=6d6952eddd313ed10111a2a56abf5421e4418808c270c772f6f35ec7523f0976 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,078 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.12-py3-none-any.whl#sha256=67987570ac064a0c09bb6a22e69589384484762af8cac9e4a688f51522a4e8a3 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,079 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.11-py3-none-any.whl#sha256=b2ea91646a12c0e31df6f5d29509d6ab0e371916b55d7f35b3e3a03bdcc0ef3d (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,080 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10.1-py3-none-any.whl#sha256=213b2a50f377d47c3203aadbe59374e5f392ed700c3c8b99b25a321c6504433b (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,080 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.10-py3-none-any.whl#sha256=d50081f549cebbfd77e5ee016efc19d9860e63e14faac945bebb55707bdcde8d (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,081 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.9-py3-none-any.whl#sha256=28cad8bafce03a40b71bffb8c9d6b0a91b46db72750069b4b2a4760650a1e7ab (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,081 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.8-py3-none-any.whl#sha256=5c1de3fffcfc9ff6ae686c8b47b1bcc3eeab0bcb6ec104fdafbc920c4861fbb7 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,082 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.7-py3-none-any.whl#sha256=78412742db690568f7481fd2e021dc148be2862519e3f193d20cbf957e6f0338 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,083 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.6-py3-none-any.whl#sha256=e1600e93d93041641028f3364fa493f6f35a7b765d5f0aafd73089ace6f062e6 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,083 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.5-py3-none-any.whl#sha256=18ee8675a1f316d459b91049c42fde5061c6ae863063408fa063a4ecbeb0d527 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,084 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.4-py3-none-any.whl#sha256=02e593c71a8c2ed237d3f0138051b8e8c7f7f7c018ecc51b0cf46a17ad8c3f7f (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,084 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.3-py3-none-any.whl#sha256=780ff22fadd86cb81d9afe67c858e478ada911ed296d7d3f430a1da03059f96f (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,085 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,085 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,086 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,086 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,087 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,087 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,088 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,088 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,089 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,090 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,090 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,091 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,091 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,092 Skipping link: No binaries permitted for multiqc: https://www.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2024-02-28T14:27:18,092 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2024-02-28T14:27:18,093 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2024-02-28T14:27:18,116 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2024-02-28T14:27:18,135 Collecting multiqc==1.21 2024-02-28T14:27:18,138 Created temporary directory: /tmp/pip-unpack-zfj3p2lf 2024-02-28T14:27:18,360 Downloading multiqc-1.21.tar.gz (4.3 MB) 2024-02-28T14:27:20,808 Added multiqc==1.21 from https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz to build tracker '/tmp/pip-build-tracker-kr0z51ro' 2024-02-28T14:27:20,818 Created temporary directory: /tmp/pip-build-env-mzvjk_dw 2024-02-28T14:27:20,822 Installing build dependencies: started 2024-02-28T14:27:20,823 Running command pip subprocess to install build dependencies 2024-02-28T14:27:21,989 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-28T14:27:22,581 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T14:27:24,466 Collecting setuptools 2024-02-28T14:27:25,984 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB) 2024-02-28T14:27:29,560 Installing collected packages: setuptools 2024-02-28T14:27:31,767 Successfully installed setuptools-69.1.1 2024-02-28T14:27:32,240 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-28T14:27:32,241 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-28T14:27:32,506 Installing build dependencies: finished with status 'done' 2024-02-28T14:27:32,510 Getting requirements to build wheel: started 2024-02-28T14:27:32,511 Running command Getting requirements to build wheel 2024-02-28T14:27:33,254 running egg_info 2024-02-28T14:27:33,258 writing multiqc.egg-info/PKG-INFO 2024-02-28T14:27:33,264 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-02-28T14:27:33,271 writing entry points to multiqc.egg-info/entry_points.txt 2024-02-28T14:27:33,274 writing requirements to multiqc.egg-info/requires.txt 2024-02-28T14:27:33,276 writing top-level names to multiqc.egg-info/top_level.txt 2024-02-28T14:27:33,289 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:33,371 reading manifest template 'MANIFEST.in' 2024-02-28T14:27:33,640 adding license file 'LICENSE' 2024-02-28T14:27:33,667 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:33,779 Getting requirements to build wheel: finished with status 'done' 2024-02-28T14:27:33,787 Installing backend dependencies: started 2024-02-28T14:27:33,788 Running command pip subprocess to install backend dependencies 2024-02-28T14:27:34,921 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-02-28T14:27:35,517 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T14:27:36,021 Collecting wheel 2024-02-28T14:27:37,303 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-02-28T14:27:40,544 Installing collected packages: wheel 2024-02-28T14:27:40,766 Creating /tmp/pip-build-env-mzvjk_dw/normal/local/bin 2024-02-28T14:27:40,768 changing mode of /tmp/pip-build-env-mzvjk_dw/normal/local/bin/wheel to 755 2024-02-28T14:27:40,780 Successfully installed wheel-0.42.0 2024-02-28T14:27:41,251 [notice] A new release of pip is available: 23.3.1 -> 24.0 2024-02-28T14:27:41,252 [notice] To update, run: python3 -m pip install --upgrade pip 2024-02-28T14:27:41,480 Installing backend dependencies: finished with status 'done' 2024-02-28T14:27:41,481 Created temporary directory: /tmp/pip-modern-metadata-pleis7ks 2024-02-28T14:27:41,483 Preparing metadata (pyproject.toml): started 2024-02-28T14:27:41,485 Running command Preparing metadata (pyproject.toml) 2024-02-28T14:27:42,268 running dist_info 2024-02-28T14:27:42,272 creating /tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info 2024-02-28T14:27:42,276 writing /tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/PKG-INFO 2024-02-28T14:27:42,281 writing dependency_links to /tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/dependency_links.txt 2024-02-28T14:27:42,288 writing entry points to /tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/entry_points.txt 2024-02-28T14:27:42,291 writing requirements to /tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/requires.txt 2024-02-28T14:27:42,292 writing top-level names to /tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/top_level.txt 2024-02-28T14:27:42,293 writing manifest file '/tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:42,306 reading manifest file '/tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:42,308 reading manifest template 'MANIFEST.in' 2024-02-28T14:27:42,543 adding license file 'LICENSE' 2024-02-28T14:27:42,561 writing manifest file '/tmp/pip-modern-metadata-pleis7ks/multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:42,563 creating '/tmp/pip-modern-metadata-pleis7ks/multiqc-1.21.dist-info' 2024-02-28T14:27:42,722 Preparing metadata (pyproject.toml): finished with status 'done' 2024-02-28T14:27:42,733 Source in /tmp/pip-wheel-phiuc5wp/multiqc_4a2c04ac4f124a95a1a48ff85688915a has version 1.21, which satisfies requirement multiqc==1.21 from https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz 2024-02-28T14:27:42,734 Removed multiqc==1.21 from https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz from build tracker '/tmp/pip-build-tracker-kr0z51ro' 2024-02-28T14:27:42,752 Created temporary directory: /tmp/pip-unpack-dj_ia88j 2024-02-28T14:27:42,753 Created temporary directory: /tmp/pip-unpack-r0eb0uc3 2024-02-28T14:27:42,791 Building wheels for collected packages: multiqc 2024-02-28T14:27:42,795 Created temporary directory: /tmp/pip-wheel-m19u02f1 2024-02-28T14:27:42,796 Destination directory: /tmp/pip-wheel-m19u02f1 2024-02-28T14:27:42,798 Building wheel for multiqc (pyproject.toml): started 2024-02-28T14:27:42,799 Running command Building wheel for multiqc (pyproject.toml) 2024-02-28T14:27:43,580 running bdist_wheel 2024-02-28T14:27:43,595 running build 2024-02-28T14:27:43,596 running build_py 2024-02-28T14:27:43,600 creating build 2024-02-28T14:27:43,601 creating build/lib 2024-02-28T14:27:43,601 creating build/lib/multiqc 2024-02-28T14:27:43,603 copying multiqc/multiqc.py -> build/lib/multiqc 2024-02-28T14:27:43,606 copying multiqc/__main__.py -> build/lib/multiqc 2024-02-28T14:27:43,608 copying multiqc/__init__.py -> build/lib/multiqc 2024-02-28T14:27:43,610 running egg_info 2024-02-28T14:27:43,613 writing multiqc.egg-info/PKG-INFO 2024-02-28T14:27:43,618 writing dependency_links to multiqc.egg-info/dependency_links.txt 2024-02-28T14:27:43,625 writing entry points to multiqc.egg-info/entry_points.txt 2024-02-28T14:27:43,627 writing requirements to multiqc.egg-info/requires.txt 2024-02-28T14:27:43,628 writing top-level names to multiqc.egg-info/top_level.txt 2024-02-28T14:27:43,635 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:43,648 reading manifest template 'MANIFEST.in' 2024-02-28T14:27:43,888 adding license file 'LICENSE' 2024-02-28T14:27:43,911 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2024-02-28T14:27:43,914 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2024-02-28T14:27:43,915 !! 2024-02-28T14:27:43,917 ******************************************************************************** 2024-02-28T14:27:43,917 ############################ 2024-02-28T14:27:43,917 # Package would be ignored # 2024-02-28T14:27:43,918 ############################ 2024-02-28T14:27:43,918 Python recognizes 'multiqc.modules' as an importable package[^1], 2024-02-28T14:27:43,919 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:43,920 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:43,920 package, please make sure that 'multiqc.modules' is explicitly added 2024-02-28T14:27:43,920 to the `packages` configuration field. 2024-02-28T14:27:43,921 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:43,922 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:43,922 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:43,923 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:43,924 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:43,925 If you don't want 'multiqc.modules' to be distributed and are 2024-02-28T14:27:43,925 already explicitly excluding 'multiqc.modules' via 2024-02-28T14:27:43,926 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:43,926 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:43,926 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:43,928 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:43,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:43,930 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:43,931 even if it does not contain any `.py` files. 2024-02-28T14:27:43,931 On the other hand, currently there is no concept of package data 2024-02-28T14:27:43,932 directory, all directories are treated like packages. 2024-02-28T14:27:43,932 ******************************************************************************** 2024-02-28T14:27:43,933 !! 2024-02-28T14:27:43,934 check.warn(importable) 2024-02-28T14:27:43,935 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.adapterRemoval' is absent from the `packages` configuration. 2024-02-28T14:27:43,935 !! 2024-02-28T14:27:43,936 ******************************************************************************** 2024-02-28T14:27:43,937 ############################ 2024-02-28T14:27:43,937 # Package would be ignored # 2024-02-28T14:27:43,937 ############################ 2024-02-28T14:27:43,938 Python recognizes 'multiqc.modules.adapterRemoval' as an importable package[^1], 2024-02-28T14:27:43,938 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:43,939 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:43,940 package, please make sure that 'multiqc.modules.adapterRemoval' is explicitly added 2024-02-28T14:27:43,940 to the `packages` configuration field. 2024-02-28T14:27:43,941 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:43,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:43,942 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:43,943 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:43,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:43,945 If you don't want 'multiqc.modules.adapterRemoval' to be distributed and are 2024-02-28T14:27:43,945 already explicitly excluding 'multiqc.modules.adapterRemoval' via 2024-02-28T14:27:43,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:43,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:43,946 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:43,947 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:43,947 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:43,948 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:43,949 even if it does not contain any `.py` files. 2024-02-28T14:27:43,949 On the other hand, currently there is no concept of package data 2024-02-28T14:27:43,949 directory, all directories are treated like packages. 2024-02-28T14:27:43,950 ******************************************************************************** 2024-02-28T14:27:43,950 !! 2024-02-28T14:27:43,951 check.warn(importable) 2024-02-28T14:27:43,951 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2024-02-28T14:27:43,952 !! 2024-02-28T14:27:43,952 ******************************************************************************** 2024-02-28T14:27:43,953 ############################ 2024-02-28T14:27:43,954 # Package would be ignored # 2024-02-28T14:27:43,954 ############################ 2024-02-28T14:27:43,955 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2024-02-28T14:27:43,955 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:43,956 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:43,957 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2024-02-28T14:27:43,957 to the `packages` configuration field. 2024-02-28T14:27:43,958 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:43,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:43,959 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:43,960 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:43,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:43,962 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2024-02-28T14:27:43,962 already explicitly excluding 'multiqc.modules.afterqc' via 2024-02-28T14:27:43,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:43,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:43,964 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:43,965 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:43,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:43,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:43,968 even if it does not contain any `.py` files. 2024-02-28T14:27:43,968 On the other hand, currently there is no concept of package data 2024-02-28T14:27:43,969 directory, all directories are treated like packages. 2024-02-28T14:27:43,969 ******************************************************************************** 2024-02-28T14:27:43,970 !! 2024-02-28T14:27:43,970 check.warn(importable) 2024-02-28T14:27:43,971 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2024-02-28T14:27:43,971 !! 2024-02-28T14:27:43,972 ******************************************************************************** 2024-02-28T14:27:43,972 ############################ 2024-02-28T14:27:43,972 # Package would be ignored # 2024-02-28T14:27:43,973 ############################ 2024-02-28T14:27:43,973 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2024-02-28T14:27:43,973 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:43,974 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:43,974 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2024-02-28T14:27:43,975 to the `packages` configuration field. 2024-02-28T14:27:43,976 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:43,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:43,976 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:43,977 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:43,978 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:43,980 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2024-02-28T14:27:43,980 already explicitly excluding 'multiqc.modules.anglerfish' via 2024-02-28T14:27:43,981 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:43,981 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:43,982 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:43,982 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:43,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:43,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:43,985 even if it does not contain any `.py` files. 2024-02-28T14:27:43,986 On the other hand, currently there is no concept of package data 2024-02-28T14:27:43,986 directory, all directories are treated like packages. 2024-02-28T14:27:43,987 ******************************************************************************** 2024-02-28T14:27:43,988 !! 2024-02-28T14:27:43,988 check.warn(importable) 2024-02-28T14:27:43,988 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2024-02-28T14:27:43,989 !! 2024-02-28T14:27:43,990 ******************************************************************************** 2024-02-28T14:27:43,990 ############################ 2024-02-28T14:27:43,991 # Package would be ignored # 2024-02-28T14:27:43,991 ############################ 2024-02-28T14:27:43,992 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2024-02-28T14:27:43,992 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:43,993 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:43,994 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2024-02-28T14:27:43,994 to the `packages` configuration field. 2024-02-28T14:27:43,995 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:43,995 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:43,995 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:43,996 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:43,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:43,997 If you don't want 'multiqc.modules.bakta' to be distributed and are 2024-02-28T14:27:43,998 already explicitly excluding 'multiqc.modules.bakta' via 2024-02-28T14:27:43,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:43,998 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:43,999 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:43,999 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,001 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,002 even if it does not contain any `.py` files. 2024-02-28T14:27:44,002 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,003 directory, all directories are treated like packages. 2024-02-28T14:27:44,003 ******************************************************************************** 2024-02-28T14:27:44,004 !! 2024-02-28T14:27:44,005 check.warn(importable) 2024-02-28T14:27:44,005 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2024-02-28T14:27:44,006 !! 2024-02-28T14:27:44,006 ******************************************************************************** 2024-02-28T14:27:44,007 ############################ 2024-02-28T14:27:44,007 # Package would be ignored # 2024-02-28T14:27:44,008 ############################ 2024-02-28T14:27:44,008 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2024-02-28T14:27:44,009 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,009 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,010 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2024-02-28T14:27:44,010 to the `packages` configuration field. 2024-02-28T14:27:44,011 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,012 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,013 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,014 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,015 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2024-02-28T14:27:44,015 already explicitly excluding 'multiqc.modules.bamdst' via 2024-02-28T14:27:44,016 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,016 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,017 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,018 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,019 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,020 even if it does not contain any `.py` files. 2024-02-28T14:27:44,020 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,021 directory, all directories are treated like packages. 2024-02-28T14:27:44,021 ******************************************************************************** 2024-02-28T14:27:44,022 !! 2024-02-28T14:27:44,022 check.warn(importable) 2024-02-28T14:27:44,022 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2024-02-28T14:27:44,023 !! 2024-02-28T14:27:44,023 ******************************************************************************** 2024-02-28T14:27:44,024 ############################ 2024-02-28T14:27:44,024 # Package would be ignored # 2024-02-28T14:27:44,024 ############################ 2024-02-28T14:27:44,025 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2024-02-28T14:27:44,025 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,026 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,026 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2024-02-28T14:27:44,027 to the `packages` configuration field. 2024-02-28T14:27:44,028 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,028 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,029 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,030 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,030 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,031 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2024-02-28T14:27:44,032 already explicitly excluding 'multiqc.modules.bamtools' via 2024-02-28T14:27:44,033 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,033 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,034 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,035 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,035 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,037 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,037 even if it does not contain any `.py` files. 2024-02-28T14:27:44,038 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,038 directory, all directories are treated like packages. 2024-02-28T14:27:44,038 ******************************************************************************** 2024-02-28T14:27:44,039 !! 2024-02-28T14:27:44,040 check.warn(importable) 2024-02-28T14:27:44,040 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2024-02-28T14:27:44,041 !! 2024-02-28T14:27:44,042 ******************************************************************************** 2024-02-28T14:27:44,042 ############################ 2024-02-28T14:27:44,043 # Package would be ignored # 2024-02-28T14:27:44,044 ############################ 2024-02-28T14:27:44,044 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2024-02-28T14:27:44,044 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,045 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,045 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2024-02-28T14:27:44,046 to the `packages` configuration field. 2024-02-28T14:27:44,046 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,047 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,047 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,047 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,048 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,049 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2024-02-28T14:27:44,050 already explicitly excluding 'multiqc.modules.bbduk' via 2024-02-28T14:27:44,050 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,050 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,051 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,052 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,053 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,054 even if it does not contain any `.py` files. 2024-02-28T14:27:44,054 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,055 directory, all directories are treated like packages. 2024-02-28T14:27:44,055 ******************************************************************************** 2024-02-28T14:27:44,056 !! 2024-02-28T14:27:44,056 check.warn(importable) 2024-02-28T14:27:44,057 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2024-02-28T14:27:44,057 !! 2024-02-28T14:27:44,058 ******************************************************************************** 2024-02-28T14:27:44,059 ############################ 2024-02-28T14:27:44,059 # Package would be ignored # 2024-02-28T14:27:44,060 ############################ 2024-02-28T14:27:44,060 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2024-02-28T14:27:44,060 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,061 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,062 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2024-02-28T14:27:44,062 to the `packages` configuration field. 2024-02-28T14:27:44,063 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,064 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,065 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,067 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2024-02-28T14:27:44,068 already explicitly excluding 'multiqc.modules.bbmap' via 2024-02-28T14:27:44,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,068 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,069 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,069 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,072 even if it does not contain any `.py` files. 2024-02-28T14:27:44,072 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,073 directory, all directories are treated like packages. 2024-02-28T14:27:44,073 ******************************************************************************** 2024-02-28T14:27:44,074 !! 2024-02-28T14:27:44,074 check.warn(importable) 2024-02-28T14:27:44,075 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2024-02-28T14:27:44,075 !! 2024-02-28T14:27:44,076 ******************************************************************************** 2024-02-28T14:27:44,076 ############################ 2024-02-28T14:27:44,077 # Package would be ignored # 2024-02-28T14:27:44,077 ############################ 2024-02-28T14:27:44,077 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2024-02-28T14:27:44,078 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,079 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,079 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2024-02-28T14:27:44,080 to the `packages` configuration field. 2024-02-28T14:27:44,081 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,082 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,083 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,085 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2024-02-28T14:27:44,085 already explicitly excluding 'multiqc.modules.bcftools' via 2024-02-28T14:27:44,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,086 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,087 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,087 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,088 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,090 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,090 even if it does not contain any `.py` files. 2024-02-28T14:27:44,091 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,091 directory, all directories are treated like packages. 2024-02-28T14:27:44,092 ******************************************************************************** 2024-02-28T14:27:44,093 !! 2024-02-28T14:27:44,094 check.warn(importable) 2024-02-28T14:27:44,094 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2024-02-28T14:27:44,094 !! 2024-02-28T14:27:44,095 ******************************************************************************** 2024-02-28T14:27:44,095 ############################ 2024-02-28T14:27:44,096 # Package would be ignored # 2024-02-28T14:27:44,096 ############################ 2024-02-28T14:27:44,096 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2024-02-28T14:27:44,097 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,097 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,098 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2024-02-28T14:27:44,098 to the `packages` configuration field. 2024-02-28T14:27:44,099 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,100 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,100 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,101 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,102 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2024-02-28T14:27:44,102 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2024-02-28T14:27:44,103 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,103 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,104 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,105 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,106 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,108 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,108 even if it does not contain any `.py` files. 2024-02-28T14:27:44,109 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,109 directory, all directories are treated like packages. 2024-02-28T14:27:44,110 ******************************************************************************** 2024-02-28T14:27:44,111 !! 2024-02-28T14:27:44,111 check.warn(importable) 2024-02-28T14:27:44,111 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2024-02-28T14:27:44,112 !! 2024-02-28T14:27:44,113 ******************************************************************************** 2024-02-28T14:27:44,113 ############################ 2024-02-28T14:27:44,114 # Package would be ignored # 2024-02-28T14:27:44,114 ############################ 2024-02-28T14:27:44,115 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2024-02-28T14:27:44,115 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,116 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,116 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2024-02-28T14:27:44,117 to the `packages` configuration field. 2024-02-28T14:27:44,118 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,118 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,119 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,120 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,121 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2024-02-28T14:27:44,121 already explicitly excluding 'multiqc.modules.bclconvert' via 2024-02-28T14:27:44,122 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,122 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,122 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,123 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,124 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,125 even if it does not contain any `.py` files. 2024-02-28T14:27:44,125 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,126 directory, all directories are treated like packages. 2024-02-28T14:27:44,126 ******************************************************************************** 2024-02-28T14:27:44,127 !! 2024-02-28T14:27:44,128 check.warn(importable) 2024-02-28T14:27:44,128 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2024-02-28T14:27:44,129 !! 2024-02-28T14:27:44,130 ******************************************************************************** 2024-02-28T14:27:44,130 ############################ 2024-02-28T14:27:44,131 # Package would be ignored # 2024-02-28T14:27:44,131 ############################ 2024-02-28T14:27:44,132 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2024-02-28T14:27:44,132 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,134 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,134 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2024-02-28T14:27:44,135 to the `packages` configuration field. 2024-02-28T14:27:44,136 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,137 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,137 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,138 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,139 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2024-02-28T14:27:44,140 already explicitly excluding 'multiqc.modules.biobambam2' via 2024-02-28T14:27:44,140 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,141 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,143 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,146 even if it does not contain any `.py` files. 2024-02-28T14:27:44,146 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,147 directory, all directories are treated like packages. 2024-02-28T14:27:44,147 ******************************************************************************** 2024-02-28T14:27:44,148 !! 2024-02-28T14:27:44,148 check.warn(importable) 2024-02-28T14:27:44,148 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2024-02-28T14:27:44,149 !! 2024-02-28T14:27:44,149 ******************************************************************************** 2024-02-28T14:27:44,150 ############################ 2024-02-28T14:27:44,150 # Package would be ignored # 2024-02-28T14:27:44,151 ############################ 2024-02-28T14:27:44,151 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2024-02-28T14:27:44,152 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,153 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,153 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2024-02-28T14:27:44,154 to the `packages` configuration field. 2024-02-28T14:27:44,155 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,155 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,156 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,159 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2024-02-28T14:27:44,159 already explicitly excluding 'multiqc.modules.biobloomtools' via 2024-02-28T14:27:44,159 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,161 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,162 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,164 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,164 even if it does not contain any `.py` files. 2024-02-28T14:27:44,165 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,165 directory, all directories are treated like packages. 2024-02-28T14:27:44,166 ******************************************************************************** 2024-02-28T14:27:44,167 !! 2024-02-28T14:27:44,167 check.warn(importable) 2024-02-28T14:27:44,168 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2024-02-28T14:27:44,168 !! 2024-02-28T14:27:44,169 ******************************************************************************** 2024-02-28T14:27:44,169 ############################ 2024-02-28T14:27:44,170 # Package would be ignored # 2024-02-28T14:27:44,170 ############################ 2024-02-28T14:27:44,171 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2024-02-28T14:27:44,172 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,173 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,173 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2024-02-28T14:27:44,173 to the `packages` configuration field. 2024-02-28T14:27:44,174 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,174 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,175 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,175 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,177 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2024-02-28T14:27:44,177 already explicitly excluding 'multiqc.modules.biscuit' via 2024-02-28T14:27:44,177 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,178 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,178 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,179 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,181 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,181 even if it does not contain any `.py` files. 2024-02-28T14:27:44,182 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,182 directory, all directories are treated like packages. 2024-02-28T14:27:44,183 ******************************************************************************** 2024-02-28T14:27:44,184 !! 2024-02-28T14:27:44,185 check.warn(importable) 2024-02-28T14:27:44,185 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2024-02-28T14:27:44,186 !! 2024-02-28T14:27:44,187 ******************************************************************************** 2024-02-28T14:27:44,187 ############################ 2024-02-28T14:27:44,188 # Package would be ignored # 2024-02-28T14:27:44,188 ############################ 2024-02-28T14:27:44,189 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2024-02-28T14:27:44,189 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,190 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,191 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2024-02-28T14:27:44,191 to the `packages` configuration field. 2024-02-28T14:27:44,192 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,193 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,194 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,195 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,196 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,197 If you don't want 'multiqc.modules.bismark' to be distributed and are 2024-02-28T14:27:44,197 already explicitly excluding 'multiqc.modules.bismark' via 2024-02-28T14:27:44,198 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,199 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,199 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,200 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,201 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,202 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,202 even if it does not contain any `.py` files. 2024-02-28T14:27:44,202 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,203 directory, all directories are treated like packages. 2024-02-28T14:27:44,203 ******************************************************************************** 2024-02-28T14:27:44,203 !! 2024-02-28T14:27:44,204 check.warn(importable) 2024-02-28T14:27:44,204 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2024-02-28T14:27:44,205 !! 2024-02-28T14:27:44,205 ******************************************************************************** 2024-02-28T14:27:44,206 ############################ 2024-02-28T14:27:44,206 # Package would be ignored # 2024-02-28T14:27:44,206 ############################ 2024-02-28T14:27:44,207 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2024-02-28T14:27:44,207 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,208 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,208 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2024-02-28T14:27:44,209 to the `packages` configuration field. 2024-02-28T14:27:44,210 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,211 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,211 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,212 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,213 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,215 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2024-02-28T14:27:44,216 already explicitly excluding 'multiqc.modules.bowtie1' via 2024-02-28T14:27:44,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,217 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,217 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,218 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,219 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,220 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,221 even if it does not contain any `.py` files. 2024-02-28T14:27:44,221 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,222 directory, all directories are treated like packages. 2024-02-28T14:27:44,222 ******************************************************************************** 2024-02-28T14:27:44,223 !! 2024-02-28T14:27:44,224 check.warn(importable) 2024-02-28T14:27:44,224 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2024-02-28T14:27:44,225 !! 2024-02-28T14:27:44,226 ******************************************************************************** 2024-02-28T14:27:44,226 ############################ 2024-02-28T14:27:44,227 # Package would be ignored # 2024-02-28T14:27:44,227 ############################ 2024-02-28T14:27:44,227 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2024-02-28T14:27:44,228 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,228 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,229 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2024-02-28T14:27:44,229 to the `packages` configuration field. 2024-02-28T14:27:44,230 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,230 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,231 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,232 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2024-02-28T14:27:44,233 already explicitly excluding 'multiqc.modules.bowtie2' via 2024-02-28T14:27:44,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,234 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,235 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,238 even if it does not contain any `.py` files. 2024-02-28T14:27:44,239 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,240 directory, all directories are treated like packages. 2024-02-28T14:27:44,240 ******************************************************************************** 2024-02-28T14:27:44,241 !! 2024-02-28T14:27:44,242 check.warn(importable) 2024-02-28T14:27:44,242 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bracken' is absent from the `packages` configuration. 2024-02-28T14:27:44,243 !! 2024-02-28T14:27:44,244 ******************************************************************************** 2024-02-28T14:27:44,244 ############################ 2024-02-28T14:27:44,245 # Package would be ignored # 2024-02-28T14:27:44,245 ############################ 2024-02-28T14:27:44,246 Python recognizes 'multiqc.modules.bracken' as an importable package[^1], 2024-02-28T14:27:44,246 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,247 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,247 package, please make sure that 'multiqc.modules.bracken' is explicitly added 2024-02-28T14:27:44,248 to the `packages` configuration field. 2024-02-28T14:27:44,249 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,250 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,250 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,251 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,252 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,253 If you don't want 'multiqc.modules.bracken' to be distributed and are 2024-02-28T14:27:44,253 already explicitly excluding 'multiqc.modules.bracken' via 2024-02-28T14:27:44,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,254 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,254 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,255 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,255 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,256 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,257 even if it does not contain any `.py` files. 2024-02-28T14:27:44,257 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,257 directory, all directories are treated like packages. 2024-02-28T14:27:44,258 ******************************************************************************** 2024-02-28T14:27:44,258 !! 2024-02-28T14:27:44,259 check.warn(importable) 2024-02-28T14:27:44,259 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2024-02-28T14:27:44,259 !! 2024-02-28T14:27:44,260 ******************************************************************************** 2024-02-28T14:27:44,261 ############################ 2024-02-28T14:27:44,261 # Package would be ignored # 2024-02-28T14:27:44,262 ############################ 2024-02-28T14:27:44,263 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2024-02-28T14:27:44,263 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,264 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,265 package, please make sure that 'multiqc.modules.busco' is explicitly added 2024-02-28T14:27:44,265 to the `packages` configuration field. 2024-02-28T14:27:44,266 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,267 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,267 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,268 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,269 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,270 If you don't want 'multiqc.modules.busco' to be distributed and are 2024-02-28T14:27:44,270 already explicitly excluding 'multiqc.modules.busco' via 2024-02-28T14:27:44,271 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,271 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,272 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,273 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,274 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,275 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,276 even if it does not contain any `.py` files. 2024-02-28T14:27:44,276 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,277 directory, all directories are treated like packages. 2024-02-28T14:27:44,278 ******************************************************************************** 2024-02-28T14:27:44,278 !! 2024-02-28T14:27:44,279 check.warn(importable) 2024-02-28T14:27:44,279 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2024-02-28T14:27:44,279 !! 2024-02-28T14:27:44,280 ******************************************************************************** 2024-02-28T14:27:44,280 ############################ 2024-02-28T14:27:44,281 # Package would be ignored # 2024-02-28T14:27:44,281 ############################ 2024-02-28T14:27:44,281 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2024-02-28T14:27:44,282 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,282 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,283 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2024-02-28T14:27:44,283 to the `packages` configuration field. 2024-02-28T14:27:44,284 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,284 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,284 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,286 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,288 If you don't want 'multiqc.modules.bustools' to be distributed and are 2024-02-28T14:27:44,288 already explicitly excluding 'multiqc.modules.bustools' via 2024-02-28T14:27:44,289 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,289 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,290 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,291 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,292 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,294 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,294 even if it does not contain any `.py` files. 2024-02-28T14:27:44,295 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,295 directory, all directories are treated like packages. 2024-02-28T14:27:44,296 ******************************************************************************** 2024-02-28T14:27:44,297 !! 2024-02-28T14:27:44,297 check.warn(importable) 2024-02-28T14:27:44,297 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2024-02-28T14:27:44,298 !! 2024-02-28T14:27:44,299 ******************************************************************************** 2024-02-28T14:27:44,299 ############################ 2024-02-28T14:27:44,300 # Package would be ignored # 2024-02-28T14:27:44,300 ############################ 2024-02-28T14:27:44,301 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2024-02-28T14:27:44,301 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,302 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,303 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2024-02-28T14:27:44,303 to the `packages` configuration field. 2024-02-28T14:27:44,304 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,305 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,306 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,307 If you don't want 'multiqc.modules.ccs' to be distributed and are 2024-02-28T14:27:44,307 already explicitly excluding 'multiqc.modules.ccs' via 2024-02-28T14:27:44,308 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,308 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,308 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,309 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,310 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,311 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,311 even if it does not contain any `.py` files. 2024-02-28T14:27:44,312 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,312 directory, all directories are treated like packages. 2024-02-28T14:27:44,313 ******************************************************************************** 2024-02-28T14:27:44,313 !! 2024-02-28T14:27:44,314 check.warn(importable) 2024-02-28T14:27:44,315 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2024-02-28T14:27:44,315 !! 2024-02-28T14:27:44,316 ******************************************************************************** 2024-02-28T14:27:44,317 ############################ 2024-02-28T14:27:44,317 # Package would be ignored # 2024-02-28T14:27:44,318 ############################ 2024-02-28T14:27:44,318 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2024-02-28T14:27:44,318 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,319 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,320 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2024-02-28T14:27:44,320 to the `packages` configuration field. 2024-02-28T14:27:44,321 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,321 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,322 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,323 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,323 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,324 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2024-02-28T14:27:44,325 already explicitly excluding 'multiqc.modules.cellranger' via 2024-02-28T14:27:44,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,326 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,326 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,328 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,330 even if it does not contain any `.py` files. 2024-02-28T14:27:44,330 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,331 directory, all directories are treated like packages. 2024-02-28T14:27:44,331 ******************************************************************************** 2024-02-28T14:27:44,332 !! 2024-02-28T14:27:44,332 check.warn(importable) 2024-02-28T14:27:44,332 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2024-02-28T14:27:44,333 !! 2024-02-28T14:27:44,333 ******************************************************************************** 2024-02-28T14:27:44,334 ############################ 2024-02-28T14:27:44,334 # Package would be ignored # 2024-02-28T14:27:44,334 ############################ 2024-02-28T14:27:44,335 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2024-02-28T14:27:44,335 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,336 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,336 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2024-02-28T14:27:44,337 to the `packages` configuration field. 2024-02-28T14:27:44,338 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,339 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,339 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,340 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,341 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,342 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2024-02-28T14:27:44,343 already explicitly excluding 'multiqc.modules.checkqc' via 2024-02-28T14:27:44,343 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,344 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,345 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,348 even if it does not contain any `.py` files. 2024-02-28T14:27:44,348 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,349 directory, all directories are treated like packages. 2024-02-28T14:27:44,349 ******************************************************************************** 2024-02-28T14:27:44,350 !! 2024-02-28T14:27:44,351 check.warn(importable) 2024-02-28T14:27:44,351 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2024-02-28T14:27:44,352 !! 2024-02-28T14:27:44,353 ******************************************************************************** 2024-02-28T14:27:44,353 ############################ 2024-02-28T14:27:44,354 # Package would be ignored # 2024-02-28T14:27:44,355 ############################ 2024-02-28T14:27:44,355 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2024-02-28T14:27:44,355 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,356 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,356 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2024-02-28T14:27:44,357 to the `packages` configuration field. 2024-02-28T14:27:44,357 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,358 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,359 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,360 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2024-02-28T14:27:44,361 already explicitly excluding 'multiqc.modules.clipandmerge' via 2024-02-28T14:27:44,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,362 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,363 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,365 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,366 even if it does not contain any `.py` files. 2024-02-28T14:27:44,366 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,367 directory, all directories are treated like packages. 2024-02-28T14:27:44,367 ******************************************************************************** 2024-02-28T14:27:44,368 !! 2024-02-28T14:27:44,369 check.warn(importable) 2024-02-28T14:27:44,369 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2024-02-28T14:27:44,370 !! 2024-02-28T14:27:44,371 ******************************************************************************** 2024-02-28T14:27:44,371 ############################ 2024-02-28T14:27:44,372 # Package would be ignored # 2024-02-28T14:27:44,372 ############################ 2024-02-28T14:27:44,372 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2024-02-28T14:27:44,373 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,374 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,374 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2024-02-28T14:27:44,375 to the `packages` configuration field. 2024-02-28T14:27:44,376 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,376 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,377 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,378 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,380 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2024-02-28T14:27:44,380 already explicitly excluding 'multiqc.modules.clusterflow' via 2024-02-28T14:27:44,381 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,382 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,382 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,383 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,384 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,384 even if it does not contain any `.py` files. 2024-02-28T14:27:44,385 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,385 directory, all directories are treated like packages. 2024-02-28T14:27:44,385 ******************************************************************************** 2024-02-28T14:27:44,386 !! 2024-02-28T14:27:44,386 check.warn(importable) 2024-02-28T14:27:44,387 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2024-02-28T14:27:44,387 !! 2024-02-28T14:27:44,388 ******************************************************************************** 2024-02-28T14:27:44,388 ############################ 2024-02-28T14:27:44,389 # Package would be ignored # 2024-02-28T14:27:44,389 ############################ 2024-02-28T14:27:44,389 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2024-02-28T14:27:44,390 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,391 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,391 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2024-02-28T14:27:44,392 to the `packages` configuration field. 2024-02-28T14:27:44,393 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,394 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,395 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,396 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,397 If you don't want 'multiqc.modules.conpair' to be distributed and are 2024-02-28T14:27:44,398 already explicitly excluding 'multiqc.modules.conpair' via 2024-02-28T14:27:44,398 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,399 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,400 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,401 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,402 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,403 even if it does not contain any `.py` files. 2024-02-28T14:27:44,403 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,404 directory, all directories are treated like packages. 2024-02-28T14:27:44,404 ******************************************************************************** 2024-02-28T14:27:44,405 !! 2024-02-28T14:27:44,406 check.warn(importable) 2024-02-28T14:27:44,407 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.custom_content' is absent from the `packages` configuration. 2024-02-28T14:27:44,407 !! 2024-02-28T14:27:44,408 ******************************************************************************** 2024-02-28T14:27:44,408 ############################ 2024-02-28T14:27:44,408 # Package would be ignored # 2024-02-28T14:27:44,409 ############################ 2024-02-28T14:27:44,409 Python recognizes 'multiqc.modules.custom_content' as an importable package[^1], 2024-02-28T14:27:44,409 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,410 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,410 package, please make sure that 'multiqc.modules.custom_content' is explicitly added 2024-02-28T14:27:44,411 to the `packages` configuration field. 2024-02-28T14:27:44,411 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,412 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,413 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,413 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,414 If you don't want 'multiqc.modules.custom_content' to be distributed and are 2024-02-28T14:27:44,414 already explicitly excluding 'multiqc.modules.custom_content' via 2024-02-28T14:27:44,415 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,416 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,416 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,417 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,418 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,420 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,420 even if it does not contain any `.py` files. 2024-02-28T14:27:44,421 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,421 directory, all directories are treated like packages. 2024-02-28T14:27:44,422 ******************************************************************************** 2024-02-28T14:27:44,423 !! 2024-02-28T14:27:44,423 check.warn(importable) 2024-02-28T14:27:44,424 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2024-02-28T14:27:44,424 !! 2024-02-28T14:27:44,425 ******************************************************************************** 2024-02-28T14:27:44,426 ############################ 2024-02-28T14:27:44,426 # Package would be ignored # 2024-02-28T14:27:44,427 ############################ 2024-02-28T14:27:44,427 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2024-02-28T14:27:44,428 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,429 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,430 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2024-02-28T14:27:44,430 to the `packages` configuration field. 2024-02-28T14:27:44,431 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,433 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,433 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,435 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2024-02-28T14:27:44,435 already explicitly excluding 'multiqc.modules.cutadapt' via 2024-02-28T14:27:44,435 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,436 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,436 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,437 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,438 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,439 even if it does not contain any `.py` files. 2024-02-28T14:27:44,439 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,439 directory, all directories are treated like packages. 2024-02-28T14:27:44,440 ******************************************************************************** 2024-02-28T14:27:44,440 !! 2024-02-28T14:27:44,441 check.warn(importable) 2024-02-28T14:27:44,441 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2024-02-28T14:27:44,442 !! 2024-02-28T14:27:44,443 ******************************************************************************** 2024-02-28T14:27:44,443 ############################ 2024-02-28T14:27:44,444 # Package would be ignored # 2024-02-28T14:27:44,444 ############################ 2024-02-28T14:27:44,445 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2024-02-28T14:27:44,445 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,446 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,447 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2024-02-28T14:27:44,447 to the `packages` configuration field. 2024-02-28T14:27:44,448 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,449 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,450 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,452 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2024-02-28T14:27:44,453 already explicitly excluding 'multiqc.modules.damageprofiler' via 2024-02-28T14:27:44,453 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,453 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,454 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,455 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,458 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,459 even if it does not contain any `.py` files. 2024-02-28T14:27:44,459 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,459 directory, all directories are treated like packages. 2024-02-28T14:27:44,459 ******************************************************************************** 2024-02-28T14:27:44,460 !! 2024-02-28T14:27:44,460 check.warn(importable) 2024-02-28T14:27:44,461 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2024-02-28T14:27:44,461 !! 2024-02-28T14:27:44,462 ******************************************************************************** 2024-02-28T14:27:44,462 ############################ 2024-02-28T14:27:44,462 # Package would be ignored # 2024-02-28T14:27:44,463 ############################ 2024-02-28T14:27:44,463 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2024-02-28T14:27:44,463 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,464 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,464 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2024-02-28T14:27:44,465 to the `packages` configuration field. 2024-02-28T14:27:44,465 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,466 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,467 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,468 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,469 If you don't want 'multiqc.modules.dedup' to be distributed and are 2024-02-28T14:27:44,470 already explicitly excluding 'multiqc.modules.dedup' via 2024-02-28T14:27:44,470 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,471 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,472 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,473 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,474 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,475 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,475 even if it does not contain any `.py` files. 2024-02-28T14:27:44,476 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,476 directory, all directories are treated like packages. 2024-02-28T14:27:44,477 ******************************************************************************** 2024-02-28T14:27:44,478 !! 2024-02-28T14:27:44,478 check.warn(importable) 2024-02-28T14:27:44,479 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2024-02-28T14:27:44,479 !! 2024-02-28T14:27:44,480 ******************************************************************************** 2024-02-28T14:27:44,481 ############################ 2024-02-28T14:27:44,481 # Package would be ignored # 2024-02-28T14:27:44,482 ############################ 2024-02-28T14:27:44,482 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2024-02-28T14:27:44,483 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,484 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,484 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2024-02-28T14:27:44,484 to the `packages` configuration field. 2024-02-28T14:27:44,485 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,486 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,486 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,487 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,487 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2024-02-28T14:27:44,488 already explicitly excluding 'multiqc.modules.deeptools' via 2024-02-28T14:27:44,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,489 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,489 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,490 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,491 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,492 even if it does not contain any `.py` files. 2024-02-28T14:27:44,492 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,493 directory, all directories are treated like packages. 2024-02-28T14:27:44,493 ******************************************************************************** 2024-02-28T14:27:44,494 !! 2024-02-28T14:27:44,495 check.warn(importable) 2024-02-28T14:27:44,495 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2024-02-28T14:27:44,496 !! 2024-02-28T14:27:44,497 ******************************************************************************** 2024-02-28T14:27:44,498 ############################ 2024-02-28T14:27:44,498 # Package would be ignored # 2024-02-28T14:27:44,499 ############################ 2024-02-28T14:27:44,499 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2024-02-28T14:27:44,500 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,501 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,501 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2024-02-28T14:27:44,502 to the `packages` configuration field. 2024-02-28T14:27:44,502 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,503 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,503 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,504 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,506 If you don't want 'multiqc.modules.diamond' to be distributed and are 2024-02-28T14:27:44,507 already explicitly excluding 'multiqc.modules.diamond' via 2024-02-28T14:27:44,508 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,508 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,509 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,510 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,510 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,511 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,511 even if it does not contain any `.py` files. 2024-02-28T14:27:44,512 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,512 directory, all directories are treated like packages. 2024-02-28T14:27:44,512 ******************************************************************************** 2024-02-28T14:27:44,513 !! 2024-02-28T14:27:44,513 check.warn(importable) 2024-02-28T14:27:44,514 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2024-02-28T14:27:44,514 !! 2024-02-28T14:27:44,515 ******************************************************************************** 2024-02-28T14:27:44,515 ############################ 2024-02-28T14:27:44,515 # Package would be ignored # 2024-02-28T14:27:44,516 ############################ 2024-02-28T14:27:44,516 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2024-02-28T14:27:44,517 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,517 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,518 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2024-02-28T14:27:44,518 to the `packages` configuration field. 2024-02-28T14:27:44,520 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,521 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,522 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,524 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2024-02-28T14:27:44,524 already explicitly excluding 'multiqc.modules.disambiguate' via 2024-02-28T14:27:44,525 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,525 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,526 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,527 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,528 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,529 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,529 even if it does not contain any `.py` files. 2024-02-28T14:27:44,530 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,530 directory, all directories are treated like packages. 2024-02-28T14:27:44,531 ******************************************************************************** 2024-02-28T14:27:44,532 !! 2024-02-28T14:27:44,532 check.warn(importable) 2024-02-28T14:27:44,533 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2024-02-28T14:27:44,533 !! 2024-02-28T14:27:44,535 ******************************************************************************** 2024-02-28T14:27:44,535 ############################ 2024-02-28T14:27:44,535 # Package would be ignored # 2024-02-28T14:27:44,536 ############################ 2024-02-28T14:27:44,536 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2024-02-28T14:27:44,536 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,537 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,537 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2024-02-28T14:27:44,538 to the `packages` configuration field. 2024-02-28T14:27:44,538 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,539 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,539 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,541 If you don't want 'multiqc.modules.dragen' to be distributed and are 2024-02-28T14:27:44,541 already explicitly excluding 'multiqc.modules.dragen' via 2024-02-28T14:27:44,541 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,542 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,543 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,547 even if it does not contain any `.py` files. 2024-02-28T14:27:44,547 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,548 directory, all directories are treated like packages. 2024-02-28T14:27:44,548 ******************************************************************************** 2024-02-28T14:27:44,549 !! 2024-02-28T14:27:44,550 check.warn(importable) 2024-02-28T14:27:44,550 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2024-02-28T14:27:44,551 !! 2024-02-28T14:27:44,552 ******************************************************************************** 2024-02-28T14:27:44,552 ############################ 2024-02-28T14:27:44,553 # Package would be ignored # 2024-02-28T14:27:44,553 ############################ 2024-02-28T14:27:44,553 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2024-02-28T14:27:44,554 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,555 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,555 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2024-02-28T14:27:44,556 to the `packages` configuration field. 2024-02-28T14:27:44,557 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,557 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,558 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,559 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,559 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,560 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2024-02-28T14:27:44,560 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2024-02-28T14:27:44,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,561 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,562 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,563 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,564 even if it does not contain any `.py` files. 2024-02-28T14:27:44,564 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,565 directory, all directories are treated like packages. 2024-02-28T14:27:44,565 ******************************************************************************** 2024-02-28T14:27:44,566 !! 2024-02-28T14:27:44,566 check.warn(importable) 2024-02-28T14:27:44,567 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2024-02-28T14:27:44,567 !! 2024-02-28T14:27:44,568 ******************************************************************************** 2024-02-28T14:27:44,569 ############################ 2024-02-28T14:27:44,569 # Package would be ignored # 2024-02-28T14:27:44,570 ############################ 2024-02-28T14:27:44,570 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2024-02-28T14:27:44,571 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,572 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,573 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2024-02-28T14:27:44,573 to the `packages` configuration field. 2024-02-28T14:27:44,574 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,575 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,576 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,578 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2024-02-28T14:27:44,578 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2024-02-28T14:27:44,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,580 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,581 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,584 even if it does not contain any `.py` files. 2024-02-28T14:27:44,585 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,586 directory, all directories are treated like packages. 2024-02-28T14:27:44,586 ******************************************************************************** 2024-02-28T14:27:44,586 !! 2024-02-28T14:27:44,587 check.warn(importable) 2024-02-28T14:27:44,587 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2024-02-28T14:27:44,587 !! 2024-02-28T14:27:44,588 ******************************************************************************** 2024-02-28T14:27:44,588 ############################ 2024-02-28T14:27:44,589 # Package would be ignored # 2024-02-28T14:27:44,589 ############################ 2024-02-28T14:27:44,589 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2024-02-28T14:27:44,590 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,591 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,591 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2024-02-28T14:27:44,592 to the `packages` configuration field. 2024-02-28T14:27:44,592 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,593 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,593 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,595 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,596 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,597 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2024-02-28T14:27:44,598 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2024-02-28T14:27:44,599 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,599 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,600 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,601 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,602 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,604 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,605 even if it does not contain any `.py` files. 2024-02-28T14:27:44,605 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,606 directory, all directories are treated like packages. 2024-02-28T14:27:44,606 ******************************************************************************** 2024-02-28T14:27:44,607 !! 2024-02-28T14:27:44,608 check.warn(importable) 2024-02-28T14:27:44,608 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2024-02-28T14:27:44,609 !! 2024-02-28T14:27:44,610 ******************************************************************************** 2024-02-28T14:27:44,611 ############################ 2024-02-28T14:27:44,611 # Package would be ignored # 2024-02-28T14:27:44,612 ############################ 2024-02-28T14:27:44,613 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2024-02-28T14:27:44,613 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,615 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,615 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2024-02-28T14:27:44,616 to the `packages` configuration field. 2024-02-28T14:27:44,617 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,617 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,618 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,619 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,620 If you don't want 'multiqc.modules.fastp' to be distributed and are 2024-02-28T14:27:44,620 already explicitly excluding 'multiqc.modules.fastp' via 2024-02-28T14:27:44,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,621 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,622 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,623 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,624 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,625 even if it does not contain any `.py` files. 2024-02-28T14:27:44,626 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,627 directory, all directories are treated like packages. 2024-02-28T14:27:44,627 ******************************************************************************** 2024-02-28T14:27:44,629 !! 2024-02-28T14:27:44,629 check.warn(importable) 2024-02-28T14:27:44,630 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2024-02-28T14:27:44,630 !! 2024-02-28T14:27:44,632 ******************************************************************************** 2024-02-28T14:27:44,632 ############################ 2024-02-28T14:27:44,633 # Package would be ignored # 2024-02-28T14:27:44,634 ############################ 2024-02-28T14:27:44,634 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2024-02-28T14:27:44,635 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,636 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,637 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2024-02-28T14:27:44,637 to the `packages` configuration field. 2024-02-28T14:27:44,638 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,639 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,639 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,640 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,642 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,643 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2024-02-28T14:27:44,643 already explicitly excluding 'multiqc.modules.fastq_screen' via 2024-02-28T14:27:44,644 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,645 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,645 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,647 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,648 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,649 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,650 even if it does not contain any `.py` files. 2024-02-28T14:27:44,650 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,651 directory, all directories are treated like packages. 2024-02-28T14:27:44,651 ******************************************************************************** 2024-02-28T14:27:44,652 !! 2024-02-28T14:27:44,652 check.warn(importable) 2024-02-28T14:27:44,653 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2024-02-28T14:27:44,653 !! 2024-02-28T14:27:44,654 ******************************************************************************** 2024-02-28T14:27:44,655 ############################ 2024-02-28T14:27:44,655 # Package would be ignored # 2024-02-28T14:27:44,656 ############################ 2024-02-28T14:27:44,656 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2024-02-28T14:27:44,657 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,658 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,658 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2024-02-28T14:27:44,659 to the `packages` configuration field. 2024-02-28T14:27:44,660 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,661 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,662 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,664 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2024-02-28T14:27:44,665 already explicitly excluding 'multiqc.modules.fastqc' via 2024-02-28T14:27:44,665 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,667 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,668 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,670 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,671 even if it does not contain any `.py` files. 2024-02-28T14:27:44,672 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,672 directory, all directories are treated like packages. 2024-02-28T14:27:44,673 ******************************************************************************** 2024-02-28T14:27:44,674 !! 2024-02-28T14:27:44,674 check.warn(importable) 2024-02-28T14:27:44,675 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2024-02-28T14:27:44,675 !! 2024-02-28T14:27:44,677 ******************************************************************************** 2024-02-28T14:27:44,677 ############################ 2024-02-28T14:27:44,678 # Package would be ignored # 2024-02-28T14:27:44,678 ############################ 2024-02-28T14:27:44,679 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2024-02-28T14:27:44,679 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,680 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,680 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2024-02-28T14:27:44,681 to the `packages` configuration field. 2024-02-28T14:27:44,682 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,683 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,684 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,686 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2024-02-28T14:27:44,686 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2024-02-28T14:27:44,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,687 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,688 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,689 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,691 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,692 even if it does not contain any `.py` files. 2024-02-28T14:27:44,692 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,693 directory, all directories are treated like packages. 2024-02-28T14:27:44,693 ******************************************************************************** 2024-02-28T14:27:44,695 !! 2024-02-28T14:27:44,695 check.warn(importable) 2024-02-28T14:27:44,696 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2024-02-28T14:27:44,696 !! 2024-02-28T14:27:44,697 ******************************************************************************** 2024-02-28T14:27:44,698 ############################ 2024-02-28T14:27:44,698 # Package would be ignored # 2024-02-28T14:27:44,699 ############################ 2024-02-28T14:27:44,699 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2024-02-28T14:27:44,700 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,701 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,702 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2024-02-28T14:27:44,702 to the `packages` configuration field. 2024-02-28T14:27:44,703 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,705 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,706 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,708 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,709 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2024-02-28T14:27:44,709 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2024-02-28T14:27:44,710 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,710 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,710 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,711 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,712 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,714 even if it does not contain any `.py` files. 2024-02-28T14:27:44,715 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,715 directory, all directories are treated like packages. 2024-02-28T14:27:44,716 ******************************************************************************** 2024-02-28T14:27:44,716 !! 2024-02-28T14:27:44,717 check.warn(importable) 2024-02-28T14:27:44,717 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2024-02-28T14:27:44,718 !! 2024-02-28T14:27:44,719 ******************************************************************************** 2024-02-28T14:27:44,720 ############################ 2024-02-28T14:27:44,720 # Package would be ignored # 2024-02-28T14:27:44,721 ############################ 2024-02-28T14:27:44,722 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2024-02-28T14:27:44,722 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,723 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,724 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2024-02-28T14:27:44,725 to the `packages` configuration field. 2024-02-28T14:27:44,726 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,727 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,728 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,729 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,731 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2024-02-28T14:27:44,731 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2024-02-28T14:27:44,732 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,733 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,733 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,735 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,736 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,738 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,739 even if it does not contain any `.py` files. 2024-02-28T14:27:44,739 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,740 directory, all directories are treated like packages. 2024-02-28T14:27:44,741 ******************************************************************************** 2024-02-28T14:27:44,741 !! 2024-02-28T14:27:44,742 check.warn(importable) 2024-02-28T14:27:44,742 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.featureCounts' is absent from the `packages` configuration. 2024-02-28T14:27:44,743 !! 2024-02-28T14:27:44,744 ******************************************************************************** 2024-02-28T14:27:44,744 ############################ 2024-02-28T14:27:44,744 # Package would be ignored # 2024-02-28T14:27:44,745 ############################ 2024-02-28T14:27:44,745 Python recognizes 'multiqc.modules.featureCounts' as an importable package[^1], 2024-02-28T14:27:44,746 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,747 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,747 package, please make sure that 'multiqc.modules.featureCounts' is explicitly added 2024-02-28T14:27:44,747 to the `packages` configuration field. 2024-02-28T14:27:44,748 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,749 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,750 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,752 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,753 If you don't want 'multiqc.modules.featureCounts' to be distributed and are 2024-02-28T14:27:44,753 already explicitly excluding 'multiqc.modules.featureCounts' via 2024-02-28T14:27:44,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,755 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,756 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,757 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,760 even if it does not contain any `.py` files. 2024-02-28T14:27:44,761 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,761 directory, all directories are treated like packages. 2024-02-28T14:27:44,762 ******************************************************************************** 2024-02-28T14:27:44,763 !! 2024-02-28T14:27:44,763 check.warn(importable) 2024-02-28T14:27:44,764 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2024-02-28T14:27:44,764 !! 2024-02-28T14:27:44,765 ******************************************************************************** 2024-02-28T14:27:44,766 ############################ 2024-02-28T14:27:44,767 # Package would be ignored # 2024-02-28T14:27:44,767 ############################ 2024-02-28T14:27:44,768 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2024-02-28T14:27:44,769 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,770 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,770 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2024-02-28T14:27:44,771 to the `packages` configuration field. 2024-02-28T14:27:44,772 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,773 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,773 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,774 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,775 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,776 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2024-02-28T14:27:44,776 already explicitly excluding 'multiqc.modules.fgbio' via 2024-02-28T14:27:44,777 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,777 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,777 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,778 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,779 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,780 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,781 even if it does not contain any `.py` files. 2024-02-28T14:27:44,781 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,782 directory, all directories are treated like packages. 2024-02-28T14:27:44,782 ******************************************************************************** 2024-02-28T14:27:44,784 !! 2024-02-28T14:27:44,784 check.warn(importable) 2024-02-28T14:27:44,785 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2024-02-28T14:27:44,786 !! 2024-02-28T14:27:44,787 ******************************************************************************** 2024-02-28T14:27:44,788 ############################ 2024-02-28T14:27:44,788 # Package would be ignored # 2024-02-28T14:27:44,789 ############################ 2024-02-28T14:27:44,790 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2024-02-28T14:27:44,790 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,792 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,792 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2024-02-28T14:27:44,792 to the `packages` configuration field. 2024-02-28T14:27:44,793 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,794 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,794 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,795 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,796 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,797 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2024-02-28T14:27:44,797 already explicitly excluding 'multiqc.modules.filtlong' via 2024-02-28T14:27:44,798 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,799 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,800 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,802 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,802 even if it does not contain any `.py` files. 2024-02-28T14:27:44,803 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,803 directory, all directories are treated like packages. 2024-02-28T14:27:44,803 ******************************************************************************** 2024-02-28T14:27:44,804 !! 2024-02-28T14:27:44,804 check.warn(importable) 2024-02-28T14:27:44,805 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2024-02-28T14:27:44,805 !! 2024-02-28T14:27:44,806 ******************************************************************************** 2024-02-28T14:27:44,806 ############################ 2024-02-28T14:27:44,806 # Package would be ignored # 2024-02-28T14:27:44,807 ############################ 2024-02-28T14:27:44,807 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2024-02-28T14:27:44,807 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,808 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,809 package, please make sure that 'multiqc.modules.flash' is explicitly added 2024-02-28T14:27:44,809 to the `packages` configuration field. 2024-02-28T14:27:44,810 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,811 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,811 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,813 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,814 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,815 If you don't want 'multiqc.modules.flash' to be distributed and are 2024-02-28T14:27:44,816 already explicitly excluding 'multiqc.modules.flash' via 2024-02-28T14:27:44,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,817 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,817 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,818 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,819 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,820 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,820 even if it does not contain any `.py` files. 2024-02-28T14:27:44,821 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,821 directory, all directories are treated like packages. 2024-02-28T14:27:44,822 ******************************************************************************** 2024-02-28T14:27:44,823 !! 2024-02-28T14:27:44,823 check.warn(importable) 2024-02-28T14:27:44,824 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2024-02-28T14:27:44,824 !! 2024-02-28T14:27:44,825 ******************************************************************************** 2024-02-28T14:27:44,825 ############################ 2024-02-28T14:27:44,826 # Package would be ignored # 2024-02-28T14:27:44,826 ############################ 2024-02-28T14:27:44,827 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2024-02-28T14:27:44,827 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,828 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,828 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2024-02-28T14:27:44,828 to the `packages` configuration field. 2024-02-28T14:27:44,829 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,829 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,830 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,831 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,831 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,832 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2024-02-28T14:27:44,832 already explicitly excluding 'multiqc.modules.flexbar' via 2024-02-28T14:27:44,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,833 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,833 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,834 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,836 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,837 even if it does not contain any `.py` files. 2024-02-28T14:27:44,838 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,838 directory, all directories are treated like packages. 2024-02-28T14:27:44,839 ******************************************************************************** 2024-02-28T14:27:44,840 !! 2024-02-28T14:27:44,840 check.warn(importable) 2024-02-28T14:27:44,841 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2024-02-28T14:27:44,841 !! 2024-02-28T14:27:44,843 ******************************************************************************** 2024-02-28T14:27:44,843 ############################ 2024-02-28T14:27:44,843 # Package would be ignored # 2024-02-28T14:27:44,844 ############################ 2024-02-28T14:27:44,844 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2024-02-28T14:27:44,845 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,846 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,846 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2024-02-28T14:27:44,847 to the `packages` configuration field. 2024-02-28T14:27:44,848 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,848 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,849 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,850 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,851 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,853 If you don't want 'multiqc.modules.freyja' to be distributed and are 2024-02-28T14:27:44,853 already explicitly excluding 'multiqc.modules.freyja' via 2024-02-28T14:27:44,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,854 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,854 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,855 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,855 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,856 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,857 even if it does not contain any `.py` files. 2024-02-28T14:27:44,857 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,857 directory, all directories are treated like packages. 2024-02-28T14:27:44,858 ******************************************************************************** 2024-02-28T14:27:44,859 !! 2024-02-28T14:27:44,859 check.warn(importable) 2024-02-28T14:27:44,859 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2024-02-28T14:27:44,860 !! 2024-02-28T14:27:44,860 ******************************************************************************** 2024-02-28T14:27:44,861 ############################ 2024-02-28T14:27:44,861 # Package would be ignored # 2024-02-28T14:27:44,862 ############################ 2024-02-28T14:27:44,862 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2024-02-28T14:27:44,863 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,864 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,864 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2024-02-28T14:27:44,865 to the `packages` configuration field. 2024-02-28T14:27:44,866 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,867 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,867 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,868 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,869 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,870 If you don't want 'multiqc.modules.gatk' to be distributed and are 2024-02-28T14:27:44,871 already explicitly excluding 'multiqc.modules.gatk' via 2024-02-28T14:27:44,871 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,872 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,872 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,873 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,874 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,876 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,876 even if it does not contain any `.py` files. 2024-02-28T14:27:44,877 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,877 directory, all directories are treated like packages. 2024-02-28T14:27:44,878 ******************************************************************************** 2024-02-28T14:27:44,879 !! 2024-02-28T14:27:44,879 check.warn(importable) 2024-02-28T14:27:44,880 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2024-02-28T14:27:44,880 !! 2024-02-28T14:27:44,881 ******************************************************************************** 2024-02-28T14:27:44,881 ############################ 2024-02-28T14:27:44,881 # Package would be ignored # 2024-02-28T14:27:44,882 ############################ 2024-02-28T14:27:44,882 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2024-02-28T14:27:44,882 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,883 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,883 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2024-02-28T14:27:44,884 to the `packages` configuration field. 2024-02-28T14:27:44,885 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,886 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,886 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,887 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,888 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2024-02-28T14:27:44,889 already explicitly excluding 'multiqc.modules.gffcompare' via 2024-02-28T14:27:44,889 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,890 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,890 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,892 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,893 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,894 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,895 even if it does not contain any `.py` files. 2024-02-28T14:27:44,896 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,896 directory, all directories are treated like packages. 2024-02-28T14:27:44,897 ******************************************************************************** 2024-02-28T14:27:44,898 !! 2024-02-28T14:27:44,898 check.warn(importable) 2024-02-28T14:27:44,899 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2024-02-28T14:27:44,899 !! 2024-02-28T14:27:44,900 ******************************************************************************** 2024-02-28T14:27:44,900 ############################ 2024-02-28T14:27:44,901 # Package would be ignored # 2024-02-28T14:27:44,901 ############################ 2024-02-28T14:27:44,902 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2024-02-28T14:27:44,902 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,903 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,904 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2024-02-28T14:27:44,904 to the `packages` configuration field. 2024-02-28T14:27:44,906 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,906 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,907 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,908 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,908 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,909 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2024-02-28T14:27:44,909 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2024-02-28T14:27:44,910 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,910 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,910 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,911 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,913 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,913 even if it does not contain any `.py` files. 2024-02-28T14:27:44,913 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,914 directory, all directories are treated like packages. 2024-02-28T14:27:44,914 ******************************************************************************** 2024-02-28T14:27:44,915 !! 2024-02-28T14:27:44,915 check.warn(importable) 2024-02-28T14:27:44,916 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2024-02-28T14:27:44,917 !! 2024-02-28T14:27:44,918 ******************************************************************************** 2024-02-28T14:27:44,918 ############################ 2024-02-28T14:27:44,919 # Package would be ignored # 2024-02-28T14:27:44,919 ############################ 2024-02-28T14:27:44,920 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2024-02-28T14:27:44,920 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,921 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,922 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2024-02-28T14:27:44,923 to the `packages` configuration field. 2024-02-28T14:27:44,924 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,924 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,924 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,925 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,926 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,927 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2024-02-28T14:27:44,928 already explicitly excluding 'multiqc.modules.gopeaks' via 2024-02-28T14:27:44,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,929 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,929 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,930 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,931 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,933 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,933 even if it does not contain any `.py` files. 2024-02-28T14:27:44,934 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,934 directory, all directories are treated like packages. 2024-02-28T14:27:44,934 ******************************************************************************** 2024-02-28T14:27:44,935 !! 2024-02-28T14:27:44,935 check.warn(importable) 2024-02-28T14:27:44,936 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2024-02-28T14:27:44,936 !! 2024-02-28T14:27:44,937 ******************************************************************************** 2024-02-28T14:27:44,937 ############################ 2024-02-28T14:27:44,937 # Package would be ignored # 2024-02-28T14:27:44,938 ############################ 2024-02-28T14:27:44,938 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2024-02-28T14:27:44,938 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,939 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,939 package, please make sure that 'multiqc.modules.happy' is explicitly added 2024-02-28T14:27:44,940 to the `packages` configuration field. 2024-02-28T14:27:44,941 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,942 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,943 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,945 If you don't want 'multiqc.modules.happy' to be distributed and are 2024-02-28T14:27:44,946 already explicitly excluding 'multiqc.modules.happy' via 2024-02-28T14:27:44,946 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,947 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,948 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,949 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,951 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,952 even if it does not contain any `.py` files. 2024-02-28T14:27:44,952 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,952 directory, all directories are treated like packages. 2024-02-28T14:27:44,953 ******************************************************************************** 2024-02-28T14:27:44,954 !! 2024-02-28T14:27:44,954 check.warn(importable) 2024-02-28T14:27:44,955 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2024-02-28T14:27:44,955 !! 2024-02-28T14:27:44,956 ******************************************************************************** 2024-02-28T14:27:44,957 ############################ 2024-02-28T14:27:44,957 # Package would be ignored # 2024-02-28T14:27:44,958 ############################ 2024-02-28T14:27:44,958 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2024-02-28T14:27:44,959 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,960 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,961 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2024-02-28T14:27:44,961 to the `packages` configuration field. 2024-02-28T14:27:44,962 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,962 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,963 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,963 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,964 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,965 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2024-02-28T14:27:44,965 already explicitly excluding 'multiqc.modules.hicexplorer' via 2024-02-28T14:27:44,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,966 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,967 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,968 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,969 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,970 even if it does not contain any `.py` files. 2024-02-28T14:27:44,970 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,971 directory, all directories are treated like packages. 2024-02-28T14:27:44,971 ******************************************************************************** 2024-02-28T14:27:44,972 !! 2024-02-28T14:27:44,973 check.warn(importable) 2024-02-28T14:27:44,973 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2024-02-28T14:27:44,974 !! 2024-02-28T14:27:44,975 ******************************************************************************** 2024-02-28T14:27:44,976 ############################ 2024-02-28T14:27:44,977 # Package would be ignored # 2024-02-28T14:27:44,977 ############################ 2024-02-28T14:27:44,978 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2024-02-28T14:27:44,978 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,979 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,979 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2024-02-28T14:27:44,980 to the `packages` configuration field. 2024-02-28T14:27:44,981 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,981 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,982 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:44,983 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:44,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:44,985 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2024-02-28T14:27:44,986 already explicitly excluding 'multiqc.modules.hicpro' via 2024-02-28T14:27:44,986 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:44,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:44,987 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:44,988 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:44,989 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:44,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:44,990 even if it does not contain any `.py` files. 2024-02-28T14:27:44,990 On the other hand, currently there is no concept of package data 2024-02-28T14:27:44,991 directory, all directories are treated like packages. 2024-02-28T14:27:44,991 ******************************************************************************** 2024-02-28T14:27:44,992 !! 2024-02-28T14:27:44,992 check.warn(importable) 2024-02-28T14:27:44,992 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2024-02-28T14:27:44,993 !! 2024-02-28T14:27:44,993 ******************************************************************************** 2024-02-28T14:27:44,994 ############################ 2024-02-28T14:27:44,994 # Package would be ignored # 2024-02-28T14:27:44,995 ############################ 2024-02-28T14:27:44,995 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2024-02-28T14:27:44,995 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:44,996 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:44,997 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2024-02-28T14:27:44,997 to the `packages` configuration field. 2024-02-28T14:27:44,998 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:44,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:44,999 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,000 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,002 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,003 If you don't want 'multiqc.modules.hicup' to be distributed and are 2024-02-28T14:27:45,003 already explicitly excluding 'multiqc.modules.hicup' via 2024-02-28T14:27:45,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,005 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,006 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,007 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,008 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,008 even if it does not contain any `.py` files. 2024-02-28T14:27:45,009 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,009 directory, all directories are treated like packages. 2024-02-28T14:27:45,010 ******************************************************************************** 2024-02-28T14:27:45,011 !! 2024-02-28T14:27:45,012 check.warn(importable) 2024-02-28T14:27:45,012 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2024-02-28T14:27:45,013 !! 2024-02-28T14:27:45,014 ******************************************************************************** 2024-02-28T14:27:45,014 ############################ 2024-02-28T14:27:45,015 # Package would be ignored # 2024-02-28T14:27:45,015 ############################ 2024-02-28T14:27:45,015 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2024-02-28T14:27:45,015 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,016 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,016 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2024-02-28T14:27:45,017 to the `packages` configuration field. 2024-02-28T14:27:45,018 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,018 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,019 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,020 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,020 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2024-02-28T14:27:45,021 already explicitly excluding 'multiqc.modules.hifiasm' via 2024-02-28T14:27:45,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,022 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,023 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,026 even if it does not contain any `.py` files. 2024-02-28T14:27:45,026 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,027 directory, all directories are treated like packages. 2024-02-28T14:27:45,027 ******************************************************************************** 2024-02-28T14:27:45,028 !! 2024-02-28T14:27:45,029 check.warn(importable) 2024-02-28T14:27:45,030 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2024-02-28T14:27:45,030 !! 2024-02-28T14:27:45,031 ******************************************************************************** 2024-02-28T14:27:45,032 ############################ 2024-02-28T14:27:45,032 # Package would be ignored # 2024-02-28T14:27:45,033 ############################ 2024-02-28T14:27:45,033 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2024-02-28T14:27:45,034 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,035 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,035 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2024-02-28T14:27:45,036 to the `packages` configuration field. 2024-02-28T14:27:45,037 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,037 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,038 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,039 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,041 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,041 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2024-02-28T14:27:45,041 already explicitly excluding 'multiqc.modules.hisat2' via 2024-02-28T14:27:45,042 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,042 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,042 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,043 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,044 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,045 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,045 even if it does not contain any `.py` files. 2024-02-28T14:27:45,046 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,046 directory, all directories are treated like packages. 2024-02-28T14:27:45,046 ******************************************************************************** 2024-02-28T14:27:45,047 !! 2024-02-28T14:27:45,048 check.warn(importable) 2024-02-28T14:27:45,048 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2024-02-28T14:27:45,048 !! 2024-02-28T14:27:45,049 ******************************************************************************** 2024-02-28T14:27:45,050 ############################ 2024-02-28T14:27:45,050 # Package would be ignored # 2024-02-28T14:27:45,051 ############################ 2024-02-28T14:27:45,052 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2024-02-28T14:27:45,052 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,053 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,054 package, please make sure that 'multiqc.modules.homer' is explicitly added 2024-02-28T14:27:45,055 to the `packages` configuration field. 2024-02-28T14:27:45,056 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,057 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,058 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,060 If you don't want 'multiqc.modules.homer' to be distributed and are 2024-02-28T14:27:45,060 already explicitly excluding 'multiqc.modules.homer' via 2024-02-28T14:27:45,060 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,061 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,061 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,062 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,063 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,065 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,066 even if it does not contain any `.py` files. 2024-02-28T14:27:45,066 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,067 directory, all directories are treated like packages. 2024-02-28T14:27:45,067 ******************************************************************************** 2024-02-28T14:27:45,068 !! 2024-02-28T14:27:45,069 check.warn(importable) 2024-02-28T14:27:45,069 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2024-02-28T14:27:45,069 !! 2024-02-28T14:27:45,070 ******************************************************************************** 2024-02-28T14:27:45,070 ############################ 2024-02-28T14:27:45,071 # Package would be ignored # 2024-02-28T14:27:45,071 ############################ 2024-02-28T14:27:45,071 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2024-02-28T14:27:45,072 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,072 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,073 package, please make sure that 'multiqc.modules.hops' is explicitly added 2024-02-28T14:27:45,073 to the `packages` configuration field. 2024-02-28T14:27:45,074 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,074 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,074 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,075 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,077 If you don't want 'multiqc.modules.hops' to be distributed and are 2024-02-28T14:27:45,077 already explicitly excluding 'multiqc.modules.hops' via 2024-02-28T14:27:45,078 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,078 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,079 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,080 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,083 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,083 even if it does not contain any `.py` files. 2024-02-28T14:27:45,084 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,084 directory, all directories are treated like packages. 2024-02-28T14:27:45,085 ******************************************************************************** 2024-02-28T14:27:45,086 !! 2024-02-28T14:27:45,086 check.warn(importable) 2024-02-28T14:27:45,087 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2024-02-28T14:27:45,087 !! 2024-02-28T14:27:45,088 ******************************************************************************** 2024-02-28T14:27:45,088 ############################ 2024-02-28T14:27:45,089 # Package would be ignored # 2024-02-28T14:27:45,089 ############################ 2024-02-28T14:27:45,090 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2024-02-28T14:27:45,090 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,091 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,092 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2024-02-28T14:27:45,092 to the `packages` configuration field. 2024-02-28T14:27:45,094 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,094 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,095 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,096 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,096 If you don't want 'multiqc.modules.htseq' to be distributed and are 2024-02-28T14:27:45,097 already explicitly excluding 'multiqc.modules.htseq' via 2024-02-28T14:27:45,097 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,098 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,098 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,100 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,101 even if it does not contain any `.py` files. 2024-02-28T14:27:45,101 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,101 directory, all directories are treated like packages. 2024-02-28T14:27:45,102 ******************************************************************************** 2024-02-28T14:27:45,103 !! 2024-02-28T14:27:45,103 check.warn(importable) 2024-02-28T14:27:45,104 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2024-02-28T14:27:45,105 !! 2024-02-28T14:27:45,106 ******************************************************************************** 2024-02-28T14:27:45,107 ############################ 2024-02-28T14:27:45,107 # Package would be ignored # 2024-02-28T14:27:45,108 ############################ 2024-02-28T14:27:45,108 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2024-02-28T14:27:45,109 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,110 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,110 package, please make sure that 'multiqc.modules.humid' is explicitly added 2024-02-28T14:27:45,111 to the `packages` configuration field. 2024-02-28T14:27:45,112 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,112 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,113 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,114 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,115 If you don't want 'multiqc.modules.humid' to be distributed and are 2024-02-28T14:27:45,116 already explicitly excluding 'multiqc.modules.humid' via 2024-02-28T14:27:45,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,117 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,119 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,120 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,121 even if it does not contain any `.py` files. 2024-02-28T14:27:45,121 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,122 directory, all directories are treated like packages. 2024-02-28T14:27:45,122 ******************************************************************************** 2024-02-28T14:27:45,123 !! 2024-02-28T14:27:45,123 check.warn(importable) 2024-02-28T14:27:45,123 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2024-02-28T14:27:45,124 !! 2024-02-28T14:27:45,124 ******************************************************************************** 2024-02-28T14:27:45,125 ############################ 2024-02-28T14:27:45,125 # Package would be ignored # 2024-02-28T14:27:45,125 ############################ 2024-02-28T14:27:45,126 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2024-02-28T14:27:45,126 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,127 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,127 package, please make sure that 'multiqc.modules.interop' is explicitly added 2024-02-28T14:27:45,128 to the `packages` configuration field. 2024-02-28T14:27:45,129 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,130 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,131 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,133 If you don't want 'multiqc.modules.interop' to be distributed and are 2024-02-28T14:27:45,134 already explicitly excluding 'multiqc.modules.interop' via 2024-02-28T14:27:45,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,135 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,136 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,139 even if it does not contain any `.py` files. 2024-02-28T14:27:45,139 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,140 directory, all directories are treated like packages. 2024-02-28T14:27:45,140 ******************************************************************************** 2024-02-28T14:27:45,141 !! 2024-02-28T14:27:45,142 check.warn(importable) 2024-02-28T14:27:45,142 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2024-02-28T14:27:45,143 !! 2024-02-28T14:27:45,144 ******************************************************************************** 2024-02-28T14:27:45,144 ############################ 2024-02-28T14:27:45,145 # Package would be ignored # 2024-02-28T14:27:45,145 ############################ 2024-02-28T14:27:45,146 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2024-02-28T14:27:45,147 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,147 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,148 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2024-02-28T14:27:45,148 to the `packages` configuration field. 2024-02-28T14:27:45,149 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,149 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,150 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,152 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2024-02-28T14:27:45,152 already explicitly excluding 'multiqc.modules.isoseq' via 2024-02-28T14:27:45,152 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,153 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,153 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,154 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,155 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,157 even if it does not contain any `.py` files. 2024-02-28T14:27:45,157 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,158 directory, all directories are treated like packages. 2024-02-28T14:27:45,158 ******************************************************************************** 2024-02-28T14:27:45,159 !! 2024-02-28T14:27:45,160 check.warn(importable) 2024-02-28T14:27:45,160 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2024-02-28T14:27:45,161 !! 2024-02-28T14:27:45,162 ******************************************************************************** 2024-02-28T14:27:45,163 ############################ 2024-02-28T14:27:45,163 # Package would be ignored # 2024-02-28T14:27:45,164 ############################ 2024-02-28T14:27:45,164 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2024-02-28T14:27:45,165 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,166 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,166 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2024-02-28T14:27:45,166 to the `packages` configuration field. 2024-02-28T14:27:45,167 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,168 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,169 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,172 If you don't want 'multiqc.modules.ivar' to be distributed and are 2024-02-28T14:27:45,172 already explicitly excluding 'multiqc.modules.ivar' via 2024-02-28T14:27:45,173 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,174 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,175 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,177 even if it does not contain any `.py` files. 2024-02-28T14:27:45,177 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,177 directory, all directories are treated like packages. 2024-02-28T14:27:45,178 ******************************************************************************** 2024-02-28T14:27:45,179 !! 2024-02-28T14:27:45,179 check.warn(importable) 2024-02-28T14:27:45,180 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2024-02-28T14:27:45,180 !! 2024-02-28T14:27:45,181 ******************************************************************************** 2024-02-28T14:27:45,181 ############################ 2024-02-28T14:27:45,182 # Package would be ignored # 2024-02-28T14:27:45,182 ############################ 2024-02-28T14:27:45,182 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2024-02-28T14:27:45,183 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,184 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,184 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2024-02-28T14:27:45,185 to the `packages` configuration field. 2024-02-28T14:27:45,186 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,187 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,188 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,189 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,190 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2024-02-28T14:27:45,191 already explicitly excluding 'multiqc.modules.jcvi' via 2024-02-28T14:27:45,191 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,192 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,192 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,193 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,194 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,196 even if it does not contain any `.py` files. 2024-02-28T14:27:45,196 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,197 directory, all directories are treated like packages. 2024-02-28T14:27:45,197 ******************************************************************************** 2024-02-28T14:27:45,198 !! 2024-02-28T14:27:45,199 check.warn(importable) 2024-02-28T14:27:45,199 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2024-02-28T14:27:45,200 !! 2024-02-28T14:27:45,201 ******************************************************************************** 2024-02-28T14:27:45,201 ############################ 2024-02-28T14:27:45,202 # Package would be ignored # 2024-02-28T14:27:45,202 ############################ 2024-02-28T14:27:45,202 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2024-02-28T14:27:45,203 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,203 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,204 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2024-02-28T14:27:45,204 to the `packages` configuration field. 2024-02-28T14:27:45,205 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,206 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,206 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,208 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2024-02-28T14:27:45,208 already explicitly excluding 'multiqc.modules.jellyfish' via 2024-02-28T14:27:45,208 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,209 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,209 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,211 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,212 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,214 even if it does not contain any `.py` files. 2024-02-28T14:27:45,215 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,215 directory, all directories are treated like packages. 2024-02-28T14:27:45,216 ******************************************************************************** 2024-02-28T14:27:45,217 !! 2024-02-28T14:27:45,217 check.warn(importable) 2024-02-28T14:27:45,218 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2024-02-28T14:27:45,218 !! 2024-02-28T14:27:45,219 ******************************************************************************** 2024-02-28T14:27:45,220 ############################ 2024-02-28T14:27:45,220 # Package would be ignored # 2024-02-28T14:27:45,221 ############################ 2024-02-28T14:27:45,221 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2024-02-28T14:27:45,222 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,223 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,223 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2024-02-28T14:27:45,224 to the `packages` configuration field. 2024-02-28T14:27:45,225 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,226 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,227 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,228 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,229 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2024-02-28T14:27:45,229 already explicitly excluding 'multiqc.modules.kaiju' via 2024-02-28T14:27:45,229 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,230 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,230 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,232 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,232 even if it does not contain any `.py` files. 2024-02-28T14:27:45,233 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,233 directory, all directories are treated like packages. 2024-02-28T14:27:45,233 ******************************************************************************** 2024-02-28T14:27:45,234 !! 2024-02-28T14:27:45,235 check.warn(importable) 2024-02-28T14:27:45,235 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2024-02-28T14:27:45,235 !! 2024-02-28T14:27:45,236 ******************************************************************************** 2024-02-28T14:27:45,237 ############################ 2024-02-28T14:27:45,237 # Package would be ignored # 2024-02-28T14:27:45,238 ############################ 2024-02-28T14:27:45,239 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2024-02-28T14:27:45,239 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,240 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,241 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2024-02-28T14:27:45,241 to the `packages` configuration field. 2024-02-28T14:27:45,242 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,243 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,243 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,244 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,246 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2024-02-28T14:27:45,246 already explicitly excluding 'multiqc.modules.kallisto' via 2024-02-28T14:27:45,247 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,248 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,248 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,249 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,250 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,252 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,252 even if it does not contain any `.py` files. 2024-02-28T14:27:45,253 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,254 directory, all directories are treated like packages. 2024-02-28T14:27:45,254 ******************************************************************************** 2024-02-28T14:27:45,255 !! 2024-02-28T14:27:45,256 check.warn(importable) 2024-02-28T14:27:45,256 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2024-02-28T14:27:45,256 !! 2024-02-28T14:27:45,257 ******************************************************************************** 2024-02-28T14:27:45,257 ############################ 2024-02-28T14:27:45,258 # Package would be ignored # 2024-02-28T14:27:45,258 ############################ 2024-02-28T14:27:45,258 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2024-02-28T14:27:45,259 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,259 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,260 package, please make sure that 'multiqc.modules.kat' is explicitly added 2024-02-28T14:27:45,260 to the `packages` configuration field. 2024-02-28T14:27:45,261 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,262 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,262 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,263 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,264 If you don't want 'multiqc.modules.kat' to be distributed and are 2024-02-28T14:27:45,265 already explicitly excluding 'multiqc.modules.kat' via 2024-02-28T14:27:45,266 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,266 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,267 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,268 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,271 even if it does not contain any `.py` files. 2024-02-28T14:27:45,272 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,272 directory, all directories are treated like packages. 2024-02-28T14:27:45,273 ******************************************************************************** 2024-02-28T14:27:45,273 !! 2024-02-28T14:27:45,274 check.warn(importable) 2024-02-28T14:27:45,274 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2024-02-28T14:27:45,275 !! 2024-02-28T14:27:45,276 ******************************************************************************** 2024-02-28T14:27:45,276 ############################ 2024-02-28T14:27:45,277 # Package would be ignored # 2024-02-28T14:27:45,277 ############################ 2024-02-28T14:27:45,278 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2024-02-28T14:27:45,278 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,280 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,280 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2024-02-28T14:27:45,281 to the `packages` configuration field. 2024-02-28T14:27:45,282 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,282 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,282 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,283 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,284 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,284 If you don't want 'multiqc.modules.kraken' to be distributed and are 2024-02-28T14:27:45,285 already explicitly excluding 'multiqc.modules.kraken' via 2024-02-28T14:27:45,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,285 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,286 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,286 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,287 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,288 even if it does not contain any `.py` files. 2024-02-28T14:27:45,289 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,289 directory, all directories are treated like packages. 2024-02-28T14:27:45,290 ******************************************************************************** 2024-02-28T14:27:45,291 !! 2024-02-28T14:27:45,292 check.warn(importable) 2024-02-28T14:27:45,292 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2024-02-28T14:27:45,293 !! 2024-02-28T14:27:45,294 ******************************************************************************** 2024-02-28T14:27:45,294 ############################ 2024-02-28T14:27:45,295 # Package would be ignored # 2024-02-28T14:27:45,295 ############################ 2024-02-28T14:27:45,296 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2024-02-28T14:27:45,296 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,298 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,298 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2024-02-28T14:27:45,299 to the `packages` configuration field. 2024-02-28T14:27:45,299 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,300 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,301 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,302 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,303 If you don't want 'multiqc.modules.leehom' to be distributed and are 2024-02-28T14:27:45,304 already explicitly excluding 'multiqc.modules.leehom' via 2024-02-28T14:27:45,304 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,305 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,305 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,307 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,308 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,309 even if it does not contain any `.py` files. 2024-02-28T14:27:45,309 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,310 directory, all directories are treated like packages. 2024-02-28T14:27:45,310 ******************************************************************************** 2024-02-28T14:27:45,311 !! 2024-02-28T14:27:45,311 check.warn(importable) 2024-02-28T14:27:45,311 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2024-02-28T14:27:45,312 !! 2024-02-28T14:27:45,312 ******************************************************************************** 2024-02-28T14:27:45,313 ############################ 2024-02-28T14:27:45,313 # Package would be ignored # 2024-02-28T14:27:45,313 ############################ 2024-02-28T14:27:45,314 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2024-02-28T14:27:45,314 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,315 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,315 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2024-02-28T14:27:45,316 to the `packages` configuration field. 2024-02-28T14:27:45,317 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,317 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,318 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,318 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,320 If you don't want 'multiqc.modules.librarian' to be distributed and are 2024-02-28T14:27:45,321 already explicitly excluding 'multiqc.modules.librarian' via 2024-02-28T14:27:45,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,321 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,322 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,323 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,326 even if it does not contain any `.py` files. 2024-02-28T14:27:45,326 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,327 directory, all directories are treated like packages. 2024-02-28T14:27:45,327 ******************************************************************************** 2024-02-28T14:27:45,328 !! 2024-02-28T14:27:45,329 check.warn(importable) 2024-02-28T14:27:45,329 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2024-02-28T14:27:45,330 !! 2024-02-28T14:27:45,331 ******************************************************************************** 2024-02-28T14:27:45,331 ############################ 2024-02-28T14:27:45,332 # Package would be ignored # 2024-02-28T14:27:45,332 ############################ 2024-02-28T14:27:45,333 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2024-02-28T14:27:45,333 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,334 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,334 package, please make sure that 'multiqc.modules.lima' is explicitly added 2024-02-28T14:27:45,334 to the `packages` configuration field. 2024-02-28T14:27:45,335 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,336 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,336 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,337 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,338 If you don't want 'multiqc.modules.lima' to be distributed and are 2024-02-28T14:27:45,338 already explicitly excluding 'multiqc.modules.lima' via 2024-02-28T14:27:45,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,339 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,340 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,342 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,343 even if it does not contain any `.py` files. 2024-02-28T14:27:45,343 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,344 directory, all directories are treated like packages. 2024-02-28T14:27:45,345 ******************************************************************************** 2024-02-28T14:27:45,346 !! 2024-02-28T14:27:45,346 check.warn(importable) 2024-02-28T14:27:45,347 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2024-02-28T14:27:45,350 !! 2024-02-28T14:27:45,351 ******************************************************************************** 2024-02-28T14:27:45,352 ############################ 2024-02-28T14:27:45,353 # Package would be ignored # 2024-02-28T14:27:45,353 ############################ 2024-02-28T14:27:45,354 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2024-02-28T14:27:45,354 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,355 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,356 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2024-02-28T14:27:45,356 to the `packages` configuration field. 2024-02-28T14:27:45,357 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,358 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,359 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,361 If you don't want 'multiqc.modules.longranger' to be distributed and are 2024-02-28T14:27:45,362 already explicitly excluding 'multiqc.modules.longranger' via 2024-02-28T14:27:45,362 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,363 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,364 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,365 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,366 even if it does not contain any `.py` files. 2024-02-28T14:27:45,366 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,366 directory, all directories are treated like packages. 2024-02-28T14:27:45,367 ******************************************************************************** 2024-02-28T14:27:45,367 !! 2024-02-28T14:27:45,368 check.warn(importable) 2024-02-28T14:27:45,368 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2024-02-28T14:27:45,368 !! 2024-02-28T14:27:45,369 ******************************************************************************** 2024-02-28T14:27:45,370 ############################ 2024-02-28T14:27:45,370 # Package would be ignored # 2024-02-28T14:27:45,370 ############################ 2024-02-28T14:27:45,371 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2024-02-28T14:27:45,371 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,372 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,373 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2024-02-28T14:27:45,373 to the `packages` configuration field. 2024-02-28T14:27:45,375 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,375 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,376 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,377 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,378 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,379 If you don't want 'multiqc.modules.macs2' to be distributed and are 2024-02-28T14:27:45,379 already explicitly excluding 'multiqc.modules.macs2' via 2024-02-28T14:27:45,379 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,380 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,380 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,381 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,382 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,383 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,384 even if it does not contain any `.py` files. 2024-02-28T14:27:45,384 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,385 directory, all directories are treated like packages. 2024-02-28T14:27:45,385 ******************************************************************************** 2024-02-28T14:27:45,386 !! 2024-02-28T14:27:45,387 check.warn(importable) 2024-02-28T14:27:45,387 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2024-02-28T14:27:45,388 !! 2024-02-28T14:27:45,389 ******************************************************************************** 2024-02-28T14:27:45,389 ############################ 2024-02-28T14:27:45,390 # Package would be ignored # 2024-02-28T14:27:45,390 ############################ 2024-02-28T14:27:45,390 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2024-02-28T14:27:45,391 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,391 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,392 package, please make sure that 'multiqc.modules.malt' is explicitly added 2024-02-28T14:27:45,392 to the `packages` configuration field. 2024-02-28T14:27:45,393 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,393 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,394 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,395 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,396 If you don't want 'multiqc.modules.malt' to be distributed and are 2024-02-28T14:27:45,396 already explicitly excluding 'multiqc.modules.malt' via 2024-02-28T14:27:45,396 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,397 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,397 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,399 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,402 even if it does not contain any `.py` files. 2024-02-28T14:27:45,402 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,403 directory, all directories are treated like packages. 2024-02-28T14:27:45,403 ******************************************************************************** 2024-02-28T14:27:45,404 !! 2024-02-28T14:27:45,405 check.warn(importable) 2024-02-28T14:27:45,405 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2024-02-28T14:27:45,406 !! 2024-02-28T14:27:45,407 ******************************************************************************** 2024-02-28T14:27:45,407 ############################ 2024-02-28T14:27:45,407 # Package would be ignored # 2024-02-28T14:27:45,408 ############################ 2024-02-28T14:27:45,408 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2024-02-28T14:27:45,409 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,410 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,410 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2024-02-28T14:27:45,411 to the `packages` configuration field. 2024-02-28T14:27:45,412 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,412 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,413 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,414 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,415 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,415 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2024-02-28T14:27:45,416 already explicitly excluding 'multiqc.modules.mapdamage' via 2024-02-28T14:27:45,416 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,416 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,417 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,417 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,418 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,419 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,420 even if it does not contain any `.py` files. 2024-02-28T14:27:45,420 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,420 directory, all directories are treated like packages. 2024-02-28T14:27:45,421 ******************************************************************************** 2024-02-28T14:27:45,421 !! 2024-02-28T14:27:45,422 check.warn(importable) 2024-02-28T14:27:45,422 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2024-02-28T14:27:45,422 !! 2024-02-28T14:27:45,424 ******************************************************************************** 2024-02-28T14:27:45,424 ############################ 2024-02-28T14:27:45,425 # Package would be ignored # 2024-02-28T14:27:45,425 ############################ 2024-02-28T14:27:45,426 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2024-02-28T14:27:45,426 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,427 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,428 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2024-02-28T14:27:45,428 to the `packages` configuration field. 2024-02-28T14:27:45,429 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,430 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,430 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,431 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,433 If you don't want 'multiqc.modules.megahit' to be distributed and are 2024-02-28T14:27:45,433 already explicitly excluding 'multiqc.modules.megahit' via 2024-02-28T14:27:45,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,435 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,436 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,439 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,439 even if it does not contain any `.py` files. 2024-02-28T14:27:45,440 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,440 directory, all directories are treated like packages. 2024-02-28T14:27:45,441 ******************************************************************************** 2024-02-28T14:27:45,441 !! 2024-02-28T14:27:45,442 check.warn(importable) 2024-02-28T14:27:45,442 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2024-02-28T14:27:45,443 !! 2024-02-28T14:27:45,443 ******************************************************************************** 2024-02-28T14:27:45,444 ############################ 2024-02-28T14:27:45,444 # Package would be ignored # 2024-02-28T14:27:45,445 ############################ 2024-02-28T14:27:45,445 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2024-02-28T14:27:45,445 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,446 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,446 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2024-02-28T14:27:45,447 to the `packages` configuration field. 2024-02-28T14:27:45,447 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,448 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,449 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,450 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,452 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2024-02-28T14:27:45,452 already explicitly excluding 'multiqc.modules.metaphlan' via 2024-02-28T14:27:45,453 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,453 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,454 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,455 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,458 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,458 even if it does not contain any `.py` files. 2024-02-28T14:27:45,459 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,459 directory, all directories are treated like packages. 2024-02-28T14:27:45,460 ******************************************************************************** 2024-02-28T14:27:45,461 !! 2024-02-28T14:27:45,461 check.warn(importable) 2024-02-28T14:27:45,461 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2024-02-28T14:27:45,462 !! 2024-02-28T14:27:45,463 ******************************************************************************** 2024-02-28T14:27:45,464 ############################ 2024-02-28T14:27:45,464 # Package would be ignored # 2024-02-28T14:27:45,465 ############################ 2024-02-28T14:27:45,465 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2024-02-28T14:27:45,466 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,467 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,468 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2024-02-28T14:27:45,468 to the `packages` configuration field. 2024-02-28T14:27:45,469 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,469 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,469 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,470 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,471 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2024-02-28T14:27:45,472 already explicitly excluding 'multiqc.modules.methylqa' via 2024-02-28T14:27:45,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,473 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,473 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,474 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,475 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,476 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,476 even if it does not contain any `.py` files. 2024-02-28T14:27:45,477 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,477 directory, all directories are treated like packages. 2024-02-28T14:27:45,478 ******************************************************************************** 2024-02-28T14:27:45,479 !! 2024-02-28T14:27:45,479 check.warn(importable) 2024-02-28T14:27:45,480 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2024-02-28T14:27:45,480 !! 2024-02-28T14:27:45,481 ******************************************************************************** 2024-02-28T14:27:45,482 ############################ 2024-02-28T14:27:45,482 # Package would be ignored # 2024-02-28T14:27:45,483 ############################ 2024-02-28T14:27:45,484 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2024-02-28T14:27:45,484 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,485 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,485 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2024-02-28T14:27:45,486 to the `packages` configuration field. 2024-02-28T14:27:45,487 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,487 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,488 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,488 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,489 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,490 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2024-02-28T14:27:45,491 already explicitly excluding 'multiqc.modules.minionqc' via 2024-02-28T14:27:45,491 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,492 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,493 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,494 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,494 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,495 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,496 even if it does not contain any `.py` files. 2024-02-28T14:27:45,496 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,496 directory, all directories are treated like packages. 2024-02-28T14:27:45,497 ******************************************************************************** 2024-02-28T14:27:45,497 !! 2024-02-28T14:27:45,498 check.warn(importable) 2024-02-28T14:27:45,498 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2024-02-28T14:27:45,498 !! 2024-02-28T14:27:45,499 ******************************************************************************** 2024-02-28T14:27:45,499 ############################ 2024-02-28T14:27:45,500 # Package would be ignored # 2024-02-28T14:27:45,500 ############################ 2024-02-28T14:27:45,501 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2024-02-28T14:27:45,501 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,502 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,502 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2024-02-28T14:27:45,503 to the `packages` configuration field. 2024-02-28T14:27:45,504 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,504 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,505 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,506 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,507 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,508 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2024-02-28T14:27:45,508 already explicitly excluding 'multiqc.modules.mirtop' via 2024-02-28T14:27:45,509 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,510 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,511 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,511 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,513 even if it does not contain any `.py` files. 2024-02-28T14:27:45,514 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,514 directory, all directories are treated like packages. 2024-02-28T14:27:45,515 ******************************************************************************** 2024-02-28T14:27:45,516 !! 2024-02-28T14:27:45,516 check.warn(importable) 2024-02-28T14:27:45,517 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2024-02-28T14:27:45,517 !! 2024-02-28T14:27:45,518 ******************************************************************************** 2024-02-28T14:27:45,519 ############################ 2024-02-28T14:27:45,520 # Package would be ignored # 2024-02-28T14:27:45,520 ############################ 2024-02-28T14:27:45,520 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2024-02-28T14:27:45,521 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,522 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,522 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2024-02-28T14:27:45,522 to the `packages` configuration field. 2024-02-28T14:27:45,523 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,524 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,524 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,525 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,526 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2024-02-28T14:27:45,526 already explicitly excluding 'multiqc.modules.mirtrace' via 2024-02-28T14:27:45,527 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,527 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,527 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,529 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,531 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,532 even if it does not contain any `.py` files. 2024-02-28T14:27:45,532 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,533 directory, all directories are treated like packages. 2024-02-28T14:27:45,533 ******************************************************************************** 2024-02-28T14:27:45,535 !! 2024-02-28T14:27:45,535 check.warn(importable) 2024-02-28T14:27:45,536 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2024-02-28T14:27:45,536 !! 2024-02-28T14:27:45,537 ******************************************************************************** 2024-02-28T14:27:45,538 ############################ 2024-02-28T14:27:45,538 # Package would be ignored # 2024-02-28T14:27:45,538 ############################ 2024-02-28T14:27:45,539 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2024-02-28T14:27:45,539 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,540 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,541 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2024-02-28T14:27:45,541 to the `packages` configuration field. 2024-02-28T14:27:45,542 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,543 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,545 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,547 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2024-02-28T14:27:45,548 already explicitly excluding 'multiqc.modules.mosdepth' via 2024-02-28T14:27:45,548 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,548 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,549 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,549 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,550 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,551 even if it does not contain any `.py` files. 2024-02-28T14:27:45,552 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,552 directory, all directories are treated like packages. 2024-02-28T14:27:45,552 ******************************************************************************** 2024-02-28T14:27:45,553 !! 2024-02-28T14:27:45,554 check.warn(importable) 2024-02-28T14:27:45,554 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2024-02-28T14:27:45,554 !! 2024-02-28T14:27:45,555 ******************************************************************************** 2024-02-28T14:27:45,555 ############################ 2024-02-28T14:27:45,556 # Package would be ignored # 2024-02-28T14:27:45,556 ############################ 2024-02-28T14:27:45,557 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2024-02-28T14:27:45,558 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,559 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,559 package, please make sure that 'multiqc.modules.motus' is explicitly added 2024-02-28T14:27:45,560 to the `packages` configuration field. 2024-02-28T14:27:45,561 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,561 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,562 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,563 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,564 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,565 If you don't want 'multiqc.modules.motus' to be distributed and are 2024-02-28T14:27:45,566 already explicitly excluding 'multiqc.modules.motus' via 2024-02-28T14:27:45,566 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,566 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,567 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,568 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,569 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,570 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,571 even if it does not contain any `.py` files. 2024-02-28T14:27:45,572 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,572 directory, all directories are treated like packages. 2024-02-28T14:27:45,573 ******************************************************************************** 2024-02-28T14:27:45,574 !! 2024-02-28T14:27:45,574 check.warn(importable) 2024-02-28T14:27:45,575 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2024-02-28T14:27:45,575 !! 2024-02-28T14:27:45,576 ******************************************************************************** 2024-02-28T14:27:45,576 ############################ 2024-02-28T14:27:45,576 # Package would be ignored # 2024-02-28T14:27:45,577 ############################ 2024-02-28T14:27:45,577 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2024-02-28T14:27:45,577 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,578 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,578 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2024-02-28T14:27:45,579 to the `packages` configuration field. 2024-02-28T14:27:45,580 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,580 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,581 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,583 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2024-02-28T14:27:45,583 already explicitly excluding 'multiqc.modules.mtnucratio' via 2024-02-28T14:27:45,584 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,584 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,585 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,586 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,587 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,589 even if it does not contain any `.py` files. 2024-02-28T14:27:45,590 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,590 directory, all directories are treated like packages. 2024-02-28T14:27:45,591 ******************************************************************************** 2024-02-28T14:27:45,592 !! 2024-02-28T14:27:45,592 check.warn(importable) 2024-02-28T14:27:45,593 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2024-02-28T14:27:45,593 !! 2024-02-28T14:27:45,594 ******************************************************************************** 2024-02-28T14:27:45,595 ############################ 2024-02-28T14:27:45,595 # Package would be ignored # 2024-02-28T14:27:45,596 ############################ 2024-02-28T14:27:45,596 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2024-02-28T14:27:45,597 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,598 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,598 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2024-02-28T14:27:45,599 to the `packages` configuration field. 2024-02-28T14:27:45,600 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,601 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,602 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,602 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,603 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2024-02-28T14:27:45,603 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2024-02-28T14:27:45,604 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,604 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,604 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,605 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,606 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,607 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,607 even if it does not contain any `.py` files. 2024-02-28T14:27:45,607 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,608 directory, all directories are treated like packages. 2024-02-28T14:27:45,608 ******************************************************************************** 2024-02-28T14:27:45,609 !! 2024-02-28T14:27:45,610 check.warn(importable) 2024-02-28T14:27:45,610 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2024-02-28T14:27:45,611 !! 2024-02-28T14:27:45,612 ******************************************************************************** 2024-02-28T14:27:45,612 ############################ 2024-02-28T14:27:45,613 # Package would be ignored # 2024-02-28T14:27:45,614 ############################ 2024-02-28T14:27:45,614 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2024-02-28T14:27:45,615 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,616 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,617 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2024-02-28T14:27:45,617 to the `packages` configuration field. 2024-02-28T14:27:45,618 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,619 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,619 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,620 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,621 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,622 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2024-02-28T14:27:45,623 already explicitly excluding 'multiqc.modules.nanostat' via 2024-02-28T14:27:45,623 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,624 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,625 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,627 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,628 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,628 even if it does not contain any `.py` files. 2024-02-28T14:27:45,629 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,629 directory, all directories are treated like packages. 2024-02-28T14:27:45,629 ******************************************************************************** 2024-02-28T14:27:45,630 !! 2024-02-28T14:27:45,630 check.warn(importable) 2024-02-28T14:27:45,631 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2024-02-28T14:27:45,631 !! 2024-02-28T14:27:45,632 ******************************************************************************** 2024-02-28T14:27:45,632 ############################ 2024-02-28T14:27:45,632 # Package would be ignored # 2024-02-28T14:27:45,633 ############################ 2024-02-28T14:27:45,633 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2024-02-28T14:27:45,634 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,635 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,635 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2024-02-28T14:27:45,636 to the `packages` configuration field. 2024-02-28T14:27:45,636 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,637 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,637 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,638 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,639 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,640 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2024-02-28T14:27:45,641 already explicitly excluding 'multiqc.modules.nextclade' via 2024-02-28T14:27:45,641 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,642 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,642 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,644 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,645 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,646 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,646 even if it does not contain any `.py` files. 2024-02-28T14:27:45,647 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,647 directory, all directories are treated like packages. 2024-02-28T14:27:45,648 ******************************************************************************** 2024-02-28T14:27:45,649 !! 2024-02-28T14:27:45,649 check.warn(importable) 2024-02-28T14:27:45,650 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2024-02-28T14:27:45,650 !! 2024-02-28T14:27:45,651 ******************************************************************************** 2024-02-28T14:27:45,652 ############################ 2024-02-28T14:27:45,652 # Package would be ignored # 2024-02-28T14:27:45,653 ############################ 2024-02-28T14:27:45,653 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2024-02-28T14:27:45,654 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,654 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,655 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2024-02-28T14:27:45,655 to the `packages` configuration field. 2024-02-28T14:27:45,656 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,656 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,657 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,658 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2024-02-28T14:27:45,659 already explicitly excluding 'multiqc.modules.ngsderive' via 2024-02-28T14:27:45,659 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,659 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,660 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,660 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,663 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,664 even if it does not contain any `.py` files. 2024-02-28T14:27:45,664 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,665 directory, all directories are treated like packages. 2024-02-28T14:27:45,665 ******************************************************************************** 2024-02-28T14:27:45,666 !! 2024-02-28T14:27:45,667 check.warn(importable) 2024-02-28T14:27:45,668 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2024-02-28T14:27:45,668 !! 2024-02-28T14:27:45,669 ******************************************************************************** 2024-02-28T14:27:45,670 ############################ 2024-02-28T14:27:45,670 # Package would be ignored # 2024-02-28T14:27:45,671 ############################ 2024-02-28T14:27:45,671 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2024-02-28T14:27:45,672 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,673 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,673 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2024-02-28T14:27:45,674 to the `packages` configuration field. 2024-02-28T14:27:45,675 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,676 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,677 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,678 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,679 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2024-02-28T14:27:45,679 already explicitly excluding 'multiqc.modules.nonpareil' via 2024-02-28T14:27:45,680 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,680 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,681 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,682 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,684 even if it does not contain any `.py` files. 2024-02-28T14:27:45,684 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,684 directory, all directories are treated like packages. 2024-02-28T14:27:45,685 ******************************************************************************** 2024-02-28T14:27:45,685 !! 2024-02-28T14:27:45,686 check.warn(importable) 2024-02-28T14:27:45,686 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2024-02-28T14:27:45,686 !! 2024-02-28T14:27:45,687 ******************************************************************************** 2024-02-28T14:27:45,687 ############################ 2024-02-28T14:27:45,688 # Package would be ignored # 2024-02-28T14:27:45,688 ############################ 2024-02-28T14:27:45,689 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2024-02-28T14:27:45,689 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,691 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,691 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2024-02-28T14:27:45,692 to the `packages` configuration field. 2024-02-28T14:27:45,693 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,693 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,694 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,695 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,696 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,697 If you don't want 'multiqc.modules.odgi' to be distributed and are 2024-02-28T14:27:45,698 already explicitly excluding 'multiqc.modules.odgi' via 2024-02-28T14:27:45,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,699 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,700 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,703 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,703 even if it does not contain any `.py` files. 2024-02-28T14:27:45,703 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,704 directory, all directories are treated like packages. 2024-02-28T14:27:45,705 ******************************************************************************** 2024-02-28T14:27:45,706 !! 2024-02-28T14:27:45,706 check.warn(importable) 2024-02-28T14:27:45,707 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2024-02-28T14:27:45,707 !! 2024-02-28T14:27:45,708 ******************************************************************************** 2024-02-28T14:27:45,709 ############################ 2024-02-28T14:27:45,709 # Package would be ignored # 2024-02-28T14:27:45,709 ############################ 2024-02-28T14:27:45,710 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2024-02-28T14:27:45,710 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,711 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,711 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2024-02-28T14:27:45,711 to the `packages` configuration field. 2024-02-28T14:27:45,712 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,713 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,714 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,714 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,715 If you don't want 'multiqc.modules.optitype' to be distributed and are 2024-02-28T14:27:45,715 already explicitly excluding 'multiqc.modules.optitype' via 2024-02-28T14:27:45,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,717 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,718 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,719 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,721 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,721 even if it does not contain any `.py` files. 2024-02-28T14:27:45,722 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,722 directory, all directories are treated like packages. 2024-02-28T14:27:45,723 ******************************************************************************** 2024-02-28T14:27:45,724 !! 2024-02-28T14:27:45,725 check.warn(importable) 2024-02-28T14:27:45,725 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2024-02-28T14:27:45,726 !! 2024-02-28T14:27:45,727 ******************************************************************************** 2024-02-28T14:27:45,727 ############################ 2024-02-28T14:27:45,728 # Package would be ignored # 2024-02-28T14:27:45,728 ############################ 2024-02-28T14:27:45,729 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2024-02-28T14:27:45,729 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,730 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,731 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2024-02-28T14:27:45,731 to the `packages` configuration field. 2024-02-28T14:27:45,732 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,733 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,734 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,736 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2024-02-28T14:27:45,736 already explicitly excluding 'multiqc.modules.pangolin' via 2024-02-28T14:27:45,736 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,737 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,737 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,738 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,738 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,739 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,740 even if it does not contain any `.py` files. 2024-02-28T14:27:45,740 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,740 directory, all directories are treated like packages. 2024-02-28T14:27:45,741 ******************************************************************************** 2024-02-28T14:27:45,742 !! 2024-02-28T14:27:45,742 check.warn(importable) 2024-02-28T14:27:45,742 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2024-02-28T14:27:45,743 !! 2024-02-28T14:27:45,743 ******************************************************************************** 2024-02-28T14:27:45,744 ############################ 2024-02-28T14:27:45,745 # Package would be ignored # 2024-02-28T14:27:45,745 ############################ 2024-02-28T14:27:45,746 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2024-02-28T14:27:45,746 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,747 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,748 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2024-02-28T14:27:45,748 to the `packages` configuration field. 2024-02-28T14:27:45,750 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,751 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,752 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,753 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2024-02-28T14:27:45,754 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2024-02-28T14:27:45,754 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,756 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,757 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,760 even if it does not contain any `.py` files. 2024-02-28T14:27:45,760 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,761 directory, all directories are treated like packages. 2024-02-28T14:27:45,761 ******************************************************************************** 2024-02-28T14:27:45,762 !! 2024-02-28T14:27:45,762 check.warn(importable) 2024-02-28T14:27:45,763 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2024-02-28T14:27:45,763 !! 2024-02-28T14:27:45,764 ******************************************************************************** 2024-02-28T14:27:45,764 ############################ 2024-02-28T14:27:45,765 # Package would be ignored # 2024-02-28T14:27:45,765 ############################ 2024-02-28T14:27:45,766 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2024-02-28T14:27:45,766 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,767 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,767 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2024-02-28T14:27:45,768 to the `packages` configuration field. 2024-02-28T14:27:45,768 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,769 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,770 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,772 If you don't want 'multiqc.modules.peddy' to be distributed and are 2024-02-28T14:27:45,773 already explicitly excluding 'multiqc.modules.peddy' via 2024-02-28T14:27:45,773 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,775 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,776 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,777 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,778 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,779 even if it does not contain any `.py` files. 2024-02-28T14:27:45,779 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,780 directory, all directories are treated like packages. 2024-02-28T14:27:45,780 ******************************************************************************** 2024-02-28T14:27:45,781 !! 2024-02-28T14:27:45,782 check.warn(importable) 2024-02-28T14:27:45,782 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2024-02-28T14:27:45,783 !! 2024-02-28T14:27:45,784 ******************************************************************************** 2024-02-28T14:27:45,784 ############################ 2024-02-28T14:27:45,785 # Package would be ignored # 2024-02-28T14:27:45,785 ############################ 2024-02-28T14:27:45,786 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2024-02-28T14:27:45,786 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,787 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,788 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2024-02-28T14:27:45,789 to the `packages` configuration field. 2024-02-28T14:27:45,789 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,790 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,790 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,791 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,792 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2024-02-28T14:27:45,792 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2024-02-28T14:27:45,793 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,793 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,793 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,794 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,796 even if it does not contain any `.py` files. 2024-02-28T14:27:45,797 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,797 directory, all directories are treated like packages. 2024-02-28T14:27:45,798 ******************************************************************************** 2024-02-28T14:27:45,799 !! 2024-02-28T14:27:45,800 check.warn(importable) 2024-02-28T14:27:45,800 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2024-02-28T14:27:45,801 !! 2024-02-28T14:27:45,802 ******************************************************************************** 2024-02-28T14:27:45,802 ############################ 2024-02-28T14:27:45,803 # Package would be ignored # 2024-02-28T14:27:45,804 ############################ 2024-02-28T14:27:45,804 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2024-02-28T14:27:45,805 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,806 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,806 package, please make sure that 'multiqc.modules.picard' is explicitly added 2024-02-28T14:27:45,807 to the `packages` configuration field. 2024-02-28T14:27:45,807 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,808 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,808 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,809 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,811 If you don't want 'multiqc.modules.picard' to be distributed and are 2024-02-28T14:27:45,812 already explicitly excluding 'multiqc.modules.picard' via 2024-02-28T14:27:45,812 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,813 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,814 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,815 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,815 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,816 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,817 even if it does not contain any `.py` files. 2024-02-28T14:27:45,817 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,817 directory, all directories are treated like packages. 2024-02-28T14:27:45,818 ******************************************************************************** 2024-02-28T14:27:45,818 !! 2024-02-28T14:27:45,819 check.warn(importable) 2024-02-28T14:27:45,819 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2024-02-28T14:27:45,820 !! 2024-02-28T14:27:45,820 ******************************************************************************** 2024-02-28T14:27:45,821 ############################ 2024-02-28T14:27:45,821 # Package would be ignored # 2024-02-28T14:27:45,821 ############################ 2024-02-28T14:27:45,822 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2024-02-28T14:27:45,822 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,823 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,823 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2024-02-28T14:27:45,824 to the `packages` configuration field. 2024-02-28T14:27:45,825 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,826 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,826 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,827 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,828 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,830 If you don't want 'multiqc.modules.porechop' to be distributed and are 2024-02-28T14:27:45,830 already explicitly excluding 'multiqc.modules.porechop' via 2024-02-28T14:27:45,831 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,832 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,833 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,833 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,835 even if it does not contain any `.py` files. 2024-02-28T14:27:45,836 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,836 directory, all directories are treated like packages. 2024-02-28T14:27:45,837 ******************************************************************************** 2024-02-28T14:27:45,838 !! 2024-02-28T14:27:45,839 check.warn(importable) 2024-02-28T14:27:45,839 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2024-02-28T14:27:45,840 !! 2024-02-28T14:27:45,841 ******************************************************************************** 2024-02-28T14:27:45,842 ############################ 2024-02-28T14:27:45,843 # Package would be ignored # 2024-02-28T14:27:45,843 ############################ 2024-02-28T14:27:45,843 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2024-02-28T14:27:45,844 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,844 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,845 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2024-02-28T14:27:45,845 to the `packages` configuration field. 2024-02-28T14:27:45,846 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,846 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,847 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,847 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,848 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,849 If you don't want 'multiqc.modules.preseq' to be distributed and are 2024-02-28T14:27:45,849 already explicitly excluding 'multiqc.modules.preseq' via 2024-02-28T14:27:45,849 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,850 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,850 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,851 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,852 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,855 even if it does not contain any `.py` files. 2024-02-28T14:27:45,855 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,856 directory, all directories are treated like packages. 2024-02-28T14:27:45,856 ******************************************************************************** 2024-02-28T14:27:45,857 !! 2024-02-28T14:27:45,858 check.warn(importable) 2024-02-28T14:27:45,858 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2024-02-28T14:27:45,859 !! 2024-02-28T14:27:45,860 ******************************************************************************** 2024-02-28T14:27:45,860 ############################ 2024-02-28T14:27:45,861 # Package would be ignored # 2024-02-28T14:27:45,861 ############################ 2024-02-28T14:27:45,862 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2024-02-28T14:27:45,862 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,863 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,863 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2024-02-28T14:27:45,864 to the `packages` configuration field. 2024-02-28T14:27:45,865 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,865 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,866 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,867 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,868 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,870 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2024-02-28T14:27:45,870 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2024-02-28T14:27:45,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,871 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,871 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,872 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,872 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,873 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,874 even if it does not contain any `.py` files. 2024-02-28T14:27:45,874 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,875 directory, all directories are treated like packages. 2024-02-28T14:27:45,875 ******************************************************************************** 2024-02-28T14:27:45,876 !! 2024-02-28T14:27:45,876 check.warn(importable) 2024-02-28T14:27:45,876 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2024-02-28T14:27:45,877 !! 2024-02-28T14:27:45,878 ******************************************************************************** 2024-02-28T14:27:45,878 ############################ 2024-02-28T14:27:45,879 # Package would be ignored # 2024-02-28T14:27:45,879 ############################ 2024-02-28T14:27:45,880 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2024-02-28T14:27:45,880 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,881 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,882 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2024-02-28T14:27:45,882 to the `packages` configuration field. 2024-02-28T14:27:45,884 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,884 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,885 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,886 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,887 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,888 If you don't want 'multiqc.modules.prokka' to be distributed and are 2024-02-28T14:27:45,888 already explicitly excluding 'multiqc.modules.prokka' via 2024-02-28T14:27:45,888 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,889 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,889 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,890 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,891 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,893 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,893 even if it does not contain any `.py` files. 2024-02-28T14:27:45,894 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,895 directory, all directories are treated like packages. 2024-02-28T14:27:45,895 ******************************************************************************** 2024-02-28T14:27:45,896 !! 2024-02-28T14:27:45,896 check.warn(importable) 2024-02-28T14:27:45,897 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2024-02-28T14:27:45,897 !! 2024-02-28T14:27:45,898 ******************************************************************************** 2024-02-28T14:27:45,898 ############################ 2024-02-28T14:27:45,898 # Package would be ignored # 2024-02-28T14:27:45,899 ############################ 2024-02-28T14:27:45,899 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2024-02-28T14:27:45,899 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,900 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,900 package, please make sure that 'multiqc.modules.purple' is explicitly added 2024-02-28T14:27:45,901 to the `packages` configuration field. 2024-02-28T14:27:45,902 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,902 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,902 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,903 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,904 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,905 If you don't want 'multiqc.modules.purple' to be distributed and are 2024-02-28T14:27:45,906 already explicitly excluding 'multiqc.modules.purple' via 2024-02-28T14:27:45,906 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,907 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,907 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,908 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,910 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,911 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,912 even if it does not contain any `.py` files. 2024-02-28T14:27:45,913 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,913 directory, all directories are treated like packages. 2024-02-28T14:27:45,914 ******************************************************************************** 2024-02-28T14:27:45,915 !! 2024-02-28T14:27:45,915 check.warn(importable) 2024-02-28T14:27:45,916 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2024-02-28T14:27:45,916 !! 2024-02-28T14:27:45,917 ******************************************************************************** 2024-02-28T14:27:45,918 ############################ 2024-02-28T14:27:45,918 # Package would be ignored # 2024-02-28T14:27:45,919 ############################ 2024-02-28T14:27:45,919 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2024-02-28T14:27:45,920 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,921 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,921 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2024-02-28T14:27:45,922 to the `packages` configuration field. 2024-02-28T14:27:45,923 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,924 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,924 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,925 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,926 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2024-02-28T14:27:45,926 already explicitly excluding 'multiqc.modules.pychopper' via 2024-02-28T14:27:45,926 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,927 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,927 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,928 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,928 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,929 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,930 even if it does not contain any `.py` files. 2024-02-28T14:27:45,930 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,931 directory, all directories are treated like packages. 2024-02-28T14:27:45,931 ******************************************************************************** 2024-02-28T14:27:45,932 !! 2024-02-28T14:27:45,933 check.warn(importable) 2024-02-28T14:27:45,933 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2024-02-28T14:27:45,934 !! 2024-02-28T14:27:45,935 ******************************************************************************** 2024-02-28T14:27:45,935 ############################ 2024-02-28T14:27:45,936 # Package would be ignored # 2024-02-28T14:27:45,936 ############################ 2024-02-28T14:27:45,937 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2024-02-28T14:27:45,937 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,938 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,939 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2024-02-28T14:27:45,939 to the `packages` configuration field. 2024-02-28T14:27:45,940 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,941 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,942 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,943 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,944 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2024-02-28T14:27:45,945 already explicitly excluding 'multiqc.modules.pycoqc' via 2024-02-28T14:27:45,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,946 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,947 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,950 even if it does not contain any `.py` files. 2024-02-28T14:27:45,950 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,951 directory, all directories are treated like packages. 2024-02-28T14:27:45,951 ******************************************************************************** 2024-02-28T14:27:45,952 !! 2024-02-28T14:27:45,952 check.warn(importable) 2024-02-28T14:27:45,952 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2024-02-28T14:27:45,953 !! 2024-02-28T14:27:45,953 ******************************************************************************** 2024-02-28T14:27:45,954 ############################ 2024-02-28T14:27:45,954 # Package would be ignored # 2024-02-28T14:27:45,955 ############################ 2024-02-28T14:27:45,955 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2024-02-28T14:27:45,955 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,956 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,956 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2024-02-28T14:27:45,957 to the `packages` configuration field. 2024-02-28T14:27:45,958 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,959 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,960 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,962 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2024-02-28T14:27:45,963 already explicitly excluding 'multiqc.modules.qc3C' via 2024-02-28T14:27:45,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,964 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,965 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,968 even if it does not contain any `.py` files. 2024-02-28T14:27:45,969 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,969 directory, all directories are treated like packages. 2024-02-28T14:27:45,969 ******************************************************************************** 2024-02-28T14:27:45,970 !! 2024-02-28T14:27:45,971 check.warn(importable) 2024-02-28T14:27:45,971 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2024-02-28T14:27:45,972 !! 2024-02-28T14:27:45,973 ******************************************************************************** 2024-02-28T14:27:45,973 ############################ 2024-02-28T14:27:45,974 # Package would be ignored # 2024-02-28T14:27:45,974 ############################ 2024-02-28T14:27:45,975 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2024-02-28T14:27:45,976 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,977 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,977 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2024-02-28T14:27:45,977 to the `packages` configuration field. 2024-02-28T14:27:45,978 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,979 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,979 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:45,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:45,981 If you don't want 'multiqc.modules.qorts' to be distributed and are 2024-02-28T14:27:45,981 already explicitly excluding 'multiqc.modules.qorts' via 2024-02-28T14:27:45,981 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:45,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:45,982 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:45,983 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:45,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:45,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:45,986 even if it does not contain any `.py` files. 2024-02-28T14:27:45,986 On the other hand, currently there is no concept of package data 2024-02-28T14:27:45,987 directory, all directories are treated like packages. 2024-02-28T14:27:45,987 ******************************************************************************** 2024-02-28T14:27:45,988 !! 2024-02-28T14:27:45,989 check.warn(importable) 2024-02-28T14:27:45,989 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2024-02-28T14:27:45,990 !! 2024-02-28T14:27:45,991 ******************************************************************************** 2024-02-28T14:27:45,992 ############################ 2024-02-28T14:27:45,992 # Package would be ignored # 2024-02-28T14:27:45,993 ############################ 2024-02-28T14:27:45,993 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2024-02-28T14:27:45,994 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:45,995 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:45,995 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2024-02-28T14:27:45,996 to the `packages` configuration field. 2024-02-28T14:27:45,997 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:45,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:45,997 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:45,998 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,000 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,001 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2024-02-28T14:27:46,001 already explicitly excluding 'multiqc.modules.qualimap' via 2024-02-28T14:27:46,002 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,003 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,004 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,006 even if it does not contain any `.py` files. 2024-02-28T14:27:46,006 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,007 directory, all directories are treated like packages. 2024-02-28T14:27:46,007 ******************************************************************************** 2024-02-28T14:27:46,008 !! 2024-02-28T14:27:46,008 check.warn(importable) 2024-02-28T14:27:46,008 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2024-02-28T14:27:46,009 !! 2024-02-28T14:27:46,010 ******************************************************************************** 2024-02-28T14:27:46,010 ############################ 2024-02-28T14:27:46,010 # Package would be ignored # 2024-02-28T14:27:46,011 ############################ 2024-02-28T14:27:46,011 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2024-02-28T14:27:46,011 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,012 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,013 package, please make sure that 'multiqc.modules.quast' is explicitly added 2024-02-28T14:27:46,013 to the `packages` configuration field. 2024-02-28T14:27:46,015 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,015 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,016 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,017 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,018 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,019 If you don't want 'multiqc.modules.quast' to be distributed and are 2024-02-28T14:27:46,019 already explicitly excluding 'multiqc.modules.quast' via 2024-02-28T14:27:46,020 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,020 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,021 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,022 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,025 even if it does not contain any `.py` files. 2024-02-28T14:27:46,025 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,026 directory, all directories are treated like packages. 2024-02-28T14:27:46,026 ******************************************************************************** 2024-02-28T14:27:46,027 !! 2024-02-28T14:27:46,028 check.warn(importable) 2024-02-28T14:27:46,028 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2024-02-28T14:27:46,029 !! 2024-02-28T14:27:46,030 ******************************************************************************** 2024-02-28T14:27:46,030 ############################ 2024-02-28T14:27:46,031 # Package would be ignored # 2024-02-28T14:27:46,031 ############################ 2024-02-28T14:27:46,031 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2024-02-28T14:27:46,032 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,032 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,033 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2024-02-28T14:27:46,033 to the `packages` configuration field. 2024-02-28T14:27:46,034 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,034 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,034 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,035 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,036 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,036 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2024-02-28T14:27:46,037 already explicitly excluding 'multiqc.modules.rna_seqc' via 2024-02-28T14:27:46,037 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,038 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,039 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,041 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,042 even if it does not contain any `.py` files. 2024-02-28T14:27:46,042 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,043 directory, all directories are treated like packages. 2024-02-28T14:27:46,043 ******************************************************************************** 2024-02-28T14:27:46,044 !! 2024-02-28T14:27:46,045 check.warn(importable) 2024-02-28T14:27:46,045 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2024-02-28T14:27:46,046 !! 2024-02-28T14:27:46,047 ******************************************************************************** 2024-02-28T14:27:46,048 ############################ 2024-02-28T14:27:46,048 # Package would be ignored # 2024-02-28T14:27:46,048 ############################ 2024-02-28T14:27:46,049 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2024-02-28T14:27:46,049 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,050 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,051 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2024-02-28T14:27:46,051 to the `packages` configuration field. 2024-02-28T14:27:46,052 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,053 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,053 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,055 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,056 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2024-02-28T14:27:46,056 already explicitly excluding 'multiqc.modules.rockhopper' via 2024-02-28T14:27:46,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,057 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,058 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,058 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,061 even if it does not contain any `.py` files. 2024-02-28T14:27:46,061 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,062 directory, all directories are treated like packages. 2024-02-28T14:27:46,062 ******************************************************************************** 2024-02-28T14:27:46,063 !! 2024-02-28T14:27:46,063 check.warn(importable) 2024-02-28T14:27:46,063 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2024-02-28T14:27:46,064 !! 2024-02-28T14:27:46,065 ******************************************************************************** 2024-02-28T14:27:46,065 ############################ 2024-02-28T14:27:46,066 # Package would be ignored # 2024-02-28T14:27:46,067 ############################ 2024-02-28T14:27:46,067 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2024-02-28T14:27:46,068 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,068 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,069 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2024-02-28T14:27:46,069 to the `packages` configuration field. 2024-02-28T14:27:46,070 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,071 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,071 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,072 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,073 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,074 If you don't want 'multiqc.modules.rsem' to be distributed and are 2024-02-28T14:27:46,074 already explicitly excluding 'multiqc.modules.rsem' via 2024-02-28T14:27:46,075 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,075 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,076 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,077 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,078 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,079 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,080 even if it does not contain any `.py` files. 2024-02-28T14:27:46,080 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,081 directory, all directories are treated like packages. 2024-02-28T14:27:46,082 ******************************************************************************** 2024-02-28T14:27:46,083 !! 2024-02-28T14:27:46,083 check.warn(importable) 2024-02-28T14:27:46,083 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2024-02-28T14:27:46,084 !! 2024-02-28T14:27:46,084 ******************************************************************************** 2024-02-28T14:27:46,085 ############################ 2024-02-28T14:27:46,085 # Package would be ignored # 2024-02-28T14:27:46,085 ############################ 2024-02-28T14:27:46,086 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2024-02-28T14:27:46,086 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,087 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,087 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2024-02-28T14:27:46,087 to the `packages` configuration field. 2024-02-28T14:27:46,088 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,089 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,090 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,090 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,092 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2024-02-28T14:27:46,092 already explicitly excluding 'multiqc.modules.rseqc' via 2024-02-28T14:27:46,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,093 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,094 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,095 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,098 even if it does not contain any `.py` files. 2024-02-28T14:27:46,099 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,099 directory, all directories are treated like packages. 2024-02-28T14:27:46,100 ******************************************************************************** 2024-02-28T14:27:46,100 !! 2024-02-28T14:27:46,101 check.warn(importable) 2024-02-28T14:27:46,101 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.rseqc.assets.js' is absent from the `packages` configuration. 2024-02-28T14:27:46,102 !! 2024-02-28T14:27:46,103 ******************************************************************************** 2024-02-28T14:27:46,103 ############################ 2024-02-28T14:27:46,104 # Package would be ignored # 2024-02-28T14:27:46,104 ############################ 2024-02-28T14:27:46,105 Python recognizes 'multiqc.modules.rseqc.assets.js' as an importable package[^1], 2024-02-28T14:27:46,105 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,106 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,107 package, please make sure that 'multiqc.modules.rseqc.assets.js' is explicitly added 2024-02-28T14:27:46,108 to the `packages` configuration field. 2024-02-28T14:27:46,108 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,109 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,109 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,110 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,111 If you don't want 'multiqc.modules.rseqc.assets.js' to be distributed and are 2024-02-28T14:27:46,112 already explicitly excluding 'multiqc.modules.rseqc.assets.js' via 2024-02-28T14:27:46,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,113 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,113 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,115 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,115 even if it does not contain any `.py` files. 2024-02-28T14:27:46,116 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,116 directory, all directories are treated like packages. 2024-02-28T14:27:46,117 ******************************************************************************** 2024-02-28T14:27:46,118 !! 2024-02-28T14:27:46,118 check.warn(importable) 2024-02-28T14:27:46,119 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2024-02-28T14:27:46,119 !! 2024-02-28T14:27:46,120 ******************************************************************************** 2024-02-28T14:27:46,121 ############################ 2024-02-28T14:27:46,121 # Package would be ignored # 2024-02-28T14:27:46,122 ############################ 2024-02-28T14:27:46,122 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2024-02-28T14:27:46,123 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,124 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,125 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2024-02-28T14:27:46,125 to the `packages` configuration field. 2024-02-28T14:27:46,126 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,126 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,127 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,128 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,128 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,129 If you don't want 'multiqc.modules.salmon' to be distributed and are 2024-02-28T14:27:46,130 already explicitly excluding 'multiqc.modules.salmon' via 2024-02-28T14:27:46,131 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,131 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,132 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,133 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,134 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,135 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,135 even if it does not contain any `.py` files. 2024-02-28T14:27:46,136 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,136 directory, all directories are treated like packages. 2024-02-28T14:27:46,136 ******************************************************************************** 2024-02-28T14:27:46,137 !! 2024-02-28T14:27:46,137 check.warn(importable) 2024-02-28T14:27:46,138 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2024-02-28T14:27:46,138 !! 2024-02-28T14:27:46,139 ******************************************************************************** 2024-02-28T14:27:46,139 ############################ 2024-02-28T14:27:46,139 # Package would be ignored # 2024-02-28T14:27:46,140 ############################ 2024-02-28T14:27:46,140 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2024-02-28T14:27:46,141 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,141 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,142 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2024-02-28T14:27:46,142 to the `packages` configuration field. 2024-02-28T14:27:46,143 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,143 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,144 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,145 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,146 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,148 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2024-02-28T14:27:46,148 already explicitly excluding 'multiqc.modules.sambamba' via 2024-02-28T14:27:46,149 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,150 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,150 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,151 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,152 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,153 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,154 even if it does not contain any `.py` files. 2024-02-28T14:27:46,154 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,155 directory, all directories are treated like packages. 2024-02-28T14:27:46,155 ******************************************************************************** 2024-02-28T14:27:46,156 !! 2024-02-28T14:27:46,157 check.warn(importable) 2024-02-28T14:27:46,158 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2024-02-28T14:27:46,158 !! 2024-02-28T14:27:46,159 ******************************************************************************** 2024-02-28T14:27:46,160 ############################ 2024-02-28T14:27:46,160 # Package would be ignored # 2024-02-28T14:27:46,161 ############################ 2024-02-28T14:27:46,161 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2024-02-28T14:27:46,162 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,162 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,162 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2024-02-28T14:27:46,163 to the `packages` configuration field. 2024-02-28T14:27:46,163 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,164 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,164 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,165 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,166 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2024-02-28T14:27:46,166 already explicitly excluding 'multiqc.modules.samblaster' via 2024-02-28T14:27:46,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,167 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,168 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,171 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,171 even if it does not contain any `.py` files. 2024-02-28T14:27:46,172 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,172 directory, all directories are treated like packages. 2024-02-28T14:27:46,173 ******************************************************************************** 2024-02-28T14:27:46,174 !! 2024-02-28T14:27:46,174 check.warn(importable) 2024-02-28T14:27:46,175 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2024-02-28T14:27:46,175 !! 2024-02-28T14:27:46,176 ******************************************************************************** 2024-02-28T14:27:46,177 ############################ 2024-02-28T14:27:46,177 # Package would be ignored # 2024-02-28T14:27:46,178 ############################ 2024-02-28T14:27:46,178 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2024-02-28T14:27:46,179 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,179 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,180 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2024-02-28T14:27:46,180 to the `packages` configuration field. 2024-02-28T14:27:46,181 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,182 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,182 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,183 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,184 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,185 If you don't want 'multiqc.modules.samtools' to be distributed and are 2024-02-28T14:27:46,186 already explicitly excluding 'multiqc.modules.samtools' via 2024-02-28T14:27:46,186 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,187 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,188 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,188 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,189 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,190 even if it does not contain any `.py` files. 2024-02-28T14:27:46,190 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,190 directory, all directories are treated like packages. 2024-02-28T14:27:46,191 ******************************************************************************** 2024-02-28T14:27:46,191 !! 2024-02-28T14:27:46,192 check.warn(importable) 2024-02-28T14:27:46,192 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2024-02-28T14:27:46,192 !! 2024-02-28T14:27:46,193 ******************************************************************************** 2024-02-28T14:27:46,194 ############################ 2024-02-28T14:27:46,194 # Package would be ignored # 2024-02-28T14:27:46,195 ############################ 2024-02-28T14:27:46,195 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2024-02-28T14:27:46,195 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,197 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,197 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2024-02-28T14:27:46,198 to the `packages` configuration field. 2024-02-28T14:27:46,199 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,199 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,200 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,201 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,204 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2024-02-28T14:27:46,204 already explicitly excluding 'multiqc.modules.sargasso' via 2024-02-28T14:27:46,205 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,205 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,205 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,206 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,207 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,209 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,209 even if it does not contain any `.py` files. 2024-02-28T14:27:46,210 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,210 directory, all directories are treated like packages. 2024-02-28T14:27:46,211 ******************************************************************************** 2024-02-28T14:27:46,212 !! 2024-02-28T14:27:46,213 check.warn(importable) 2024-02-28T14:27:46,213 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2024-02-28T14:27:46,213 !! 2024-02-28T14:27:46,214 ******************************************************************************** 2024-02-28T14:27:46,214 ############################ 2024-02-28T14:27:46,215 # Package would be ignored # 2024-02-28T14:27:46,215 ############################ 2024-02-28T14:27:46,215 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2024-02-28T14:27:46,216 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,216 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,217 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2024-02-28T14:27:46,217 to the `packages` configuration field. 2024-02-28T14:27:46,218 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,218 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,218 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,219 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,220 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,220 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2024-02-28T14:27:46,221 already explicitly excluding 'multiqc.modules.seqera_cli' via 2024-02-28T14:27:46,221 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,222 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,222 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,223 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,224 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,226 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,226 even if it does not contain any `.py` files. 2024-02-28T14:27:46,227 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,228 directory, all directories are treated like packages. 2024-02-28T14:27:46,228 ******************************************************************************** 2024-02-28T14:27:46,229 !! 2024-02-28T14:27:46,229 check.warn(importable) 2024-02-28T14:27:46,230 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2024-02-28T14:27:46,230 !! 2024-02-28T14:27:46,231 ******************************************************************************** 2024-02-28T14:27:46,232 ############################ 2024-02-28T14:27:46,232 # Package would be ignored # 2024-02-28T14:27:46,232 ############################ 2024-02-28T14:27:46,233 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2024-02-28T14:27:46,233 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,234 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,235 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2024-02-28T14:27:46,236 to the `packages` configuration field. 2024-02-28T14:27:46,237 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,237 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,238 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,239 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,239 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,240 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2024-02-28T14:27:46,240 already explicitly excluding 'multiqc.modules.seqwho' via 2024-02-28T14:27:46,240 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,241 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,241 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,242 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,242 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,243 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,244 even if it does not contain any `.py` files. 2024-02-28T14:27:46,244 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,244 directory, all directories are treated like packages. 2024-02-28T14:27:46,245 ******************************************************************************** 2024-02-28T14:27:46,245 !! 2024-02-28T14:27:46,246 check.warn(importable) 2024-02-28T14:27:46,246 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2024-02-28T14:27:46,247 !! 2024-02-28T14:27:46,248 ******************************************************************************** 2024-02-28T14:27:46,249 ############################ 2024-02-28T14:27:46,249 # Package would be ignored # 2024-02-28T14:27:46,250 ############################ 2024-02-28T14:27:46,250 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2024-02-28T14:27:46,251 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,252 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,252 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2024-02-28T14:27:46,253 to the `packages` configuration field. 2024-02-28T14:27:46,254 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,254 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,255 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,256 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,256 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,257 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2024-02-28T14:27:46,258 already explicitly excluding 'multiqc.modules.seqyclean' via 2024-02-28T14:27:46,258 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,259 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,260 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,263 even if it does not contain any `.py` files. 2024-02-28T14:27:46,263 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,264 directory, all directories are treated like packages. 2024-02-28T14:27:46,264 ******************************************************************************** 2024-02-28T14:27:46,265 !! 2024-02-28T14:27:46,265 check.warn(importable) 2024-02-28T14:27:46,265 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2024-02-28T14:27:46,266 !! 2024-02-28T14:27:46,266 ******************************************************************************** 2024-02-28T14:27:46,267 ############################ 2024-02-28T14:27:46,267 # Package would be ignored # 2024-02-28T14:27:46,267 ############################ 2024-02-28T14:27:46,268 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2024-02-28T14:27:46,268 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,269 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,269 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2024-02-28T14:27:46,270 to the `packages` configuration field. 2024-02-28T14:27:46,270 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,271 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,272 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,273 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,274 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,275 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2024-02-28T14:27:46,276 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2024-02-28T14:27:46,276 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,277 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,277 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,278 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,279 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,281 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,281 even if it does not contain any `.py` files. 2024-02-28T14:27:46,281 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,282 directory, all directories are treated like packages. 2024-02-28T14:27:46,282 ******************************************************************************** 2024-02-28T14:27:46,283 !! 2024-02-28T14:27:46,284 check.warn(importable) 2024-02-28T14:27:46,284 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2024-02-28T14:27:46,284 !! 2024-02-28T14:27:46,285 ******************************************************************************** 2024-02-28T14:27:46,286 ############################ 2024-02-28T14:27:46,286 # Package would be ignored # 2024-02-28T14:27:46,287 ############################ 2024-02-28T14:27:46,287 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2024-02-28T14:27:46,288 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,289 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,289 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2024-02-28T14:27:46,290 to the `packages` configuration field. 2024-02-28T14:27:46,290 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,290 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,291 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,291 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,293 If you don't want 'multiqc.modules.sickle' to be distributed and are 2024-02-28T14:27:46,293 already explicitly excluding 'multiqc.modules.sickle' via 2024-02-28T14:27:46,293 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,294 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,294 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,295 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,296 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,297 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,297 even if it does not contain any `.py` files. 2024-02-28T14:27:46,298 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,298 directory, all directories are treated like packages. 2024-02-28T14:27:46,299 ******************************************************************************** 2024-02-28T14:27:46,300 !! 2024-02-28T14:27:46,300 check.warn(importable) 2024-02-28T14:27:46,301 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2024-02-28T14:27:46,301 !! 2024-02-28T14:27:46,302 ******************************************************************************** 2024-02-28T14:27:46,303 ############################ 2024-02-28T14:27:46,303 # Package would be ignored # 2024-02-28T14:27:46,304 ############################ 2024-02-28T14:27:46,304 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2024-02-28T14:27:46,305 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,306 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,306 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2024-02-28T14:27:46,307 to the `packages` configuration field. 2024-02-28T14:27:46,308 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,308 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,309 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,310 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,311 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,312 If you don't want 'multiqc.modules.skewer' to be distributed and are 2024-02-28T14:27:46,312 already explicitly excluding 'multiqc.modules.skewer' via 2024-02-28T14:27:46,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,314 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,315 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,316 even if it does not contain any `.py` files. 2024-02-28T14:27:46,317 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,317 directory, all directories are treated like packages. 2024-02-28T14:27:46,318 ******************************************************************************** 2024-02-28T14:27:46,318 !! 2024-02-28T14:27:46,319 check.warn(importable) 2024-02-28T14:27:46,319 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2024-02-28T14:27:46,319 !! 2024-02-28T14:27:46,320 ******************************************************************************** 2024-02-28T14:27:46,320 ############################ 2024-02-28T14:27:46,321 # Package would be ignored # 2024-02-28T14:27:46,321 ############################ 2024-02-28T14:27:46,322 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2024-02-28T14:27:46,322 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,323 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,323 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2024-02-28T14:27:46,324 to the `packages` configuration field. 2024-02-28T14:27:46,324 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,325 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,326 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,326 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,328 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,329 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2024-02-28T14:27:46,329 already explicitly excluding 'multiqc.modules.slamdunk' via 2024-02-28T14:27:46,330 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,330 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,331 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,332 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,333 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,334 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,335 even if it does not contain any `.py` files. 2024-02-28T14:27:46,335 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,336 directory, all directories are treated like packages. 2024-02-28T14:27:46,336 ******************************************************************************** 2024-02-28T14:27:46,337 !! 2024-02-28T14:27:46,338 check.warn(importable) 2024-02-28T14:27:46,338 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2024-02-28T14:27:46,339 !! 2024-02-28T14:27:46,340 ******************************************************************************** 2024-02-28T14:27:46,341 ############################ 2024-02-28T14:27:46,341 # Package would be ignored # 2024-02-28T14:27:46,341 ############################ 2024-02-28T14:27:46,342 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2024-02-28T14:27:46,342 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,343 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,344 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2024-02-28T14:27:46,344 to the `packages` configuration field. 2024-02-28T14:27:46,345 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,346 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,346 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,347 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,348 If you don't want 'multiqc.modules.snippy' to be distributed and are 2024-02-28T14:27:46,349 already explicitly excluding 'multiqc.modules.snippy' via 2024-02-28T14:27:46,349 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,349 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,350 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,351 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,352 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,354 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,354 even if it does not contain any `.py` files. 2024-02-28T14:27:46,355 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,356 directory, all directories are treated like packages. 2024-02-28T14:27:46,356 ******************************************************************************** 2024-02-28T14:27:46,357 !! 2024-02-28T14:27:46,358 check.warn(importable) 2024-02-28T14:27:46,358 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2024-02-28T14:27:46,359 !! 2024-02-28T14:27:46,360 ******************************************************************************** 2024-02-28T14:27:46,360 ############################ 2024-02-28T14:27:46,361 # Package would be ignored # 2024-02-28T14:27:46,361 ############################ 2024-02-28T14:27:46,362 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2024-02-28T14:27:46,362 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,363 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,364 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2024-02-28T14:27:46,364 to the `packages` configuration field. 2024-02-28T14:27:46,365 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,366 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,367 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,369 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,369 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2024-02-28T14:27:46,370 already explicitly excluding 'multiqc.modules.snpeff' via 2024-02-28T14:27:46,370 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,370 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,371 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,371 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,372 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,373 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,373 even if it does not contain any `.py` files. 2024-02-28T14:27:46,374 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,374 directory, all directories are treated like packages. 2024-02-28T14:27:46,374 ******************************************************************************** 2024-02-28T14:27:46,375 !! 2024-02-28T14:27:46,375 check.warn(importable) 2024-02-28T14:27:46,376 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2024-02-28T14:27:46,376 !! 2024-02-28T14:27:46,377 ******************************************************************************** 2024-02-28T14:27:46,377 ############################ 2024-02-28T14:27:46,378 # Package would be ignored # 2024-02-28T14:27:46,378 ############################ 2024-02-28T14:27:46,379 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2024-02-28T14:27:46,379 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,380 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,381 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2024-02-28T14:27:46,381 to the `packages` configuration field. 2024-02-28T14:27:46,382 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,383 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,384 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,385 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,386 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,386 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2024-02-28T14:27:46,387 already explicitly excluding 'multiqc.modules.snpsplit' via 2024-02-28T14:27:46,387 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,388 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,388 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,389 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,390 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,392 even if it does not contain any `.py` files. 2024-02-28T14:27:46,393 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,393 directory, all directories are treated like packages. 2024-02-28T14:27:46,394 ******************************************************************************** 2024-02-28T14:27:46,395 !! 2024-02-28T14:27:46,395 check.warn(importable) 2024-02-28T14:27:46,396 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2024-02-28T14:27:46,396 !! 2024-02-28T14:27:46,397 ******************************************************************************** 2024-02-28T14:27:46,397 ############################ 2024-02-28T14:27:46,397 # Package would be ignored # 2024-02-28T14:27:46,398 ############################ 2024-02-28T14:27:46,398 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2024-02-28T14:27:46,398 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,399 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,399 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2024-02-28T14:27:46,400 to the `packages` configuration field. 2024-02-28T14:27:46,401 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,401 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,401 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,402 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,403 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,404 If you don't want 'multiqc.modules.somalier' to be distributed and are 2024-02-28T14:27:46,404 already explicitly excluding 'multiqc.modules.somalier' via 2024-02-28T14:27:46,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,405 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,406 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,406 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,408 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,409 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,409 even if it does not contain any `.py` files. 2024-02-28T14:27:46,410 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,411 directory, all directories are treated like packages. 2024-02-28T14:27:46,411 ******************************************************************************** 2024-02-28T14:27:46,412 !! 2024-02-28T14:27:46,412 check.warn(importable) 2024-02-28T14:27:46,413 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2024-02-28T14:27:46,413 !! 2024-02-28T14:27:46,414 ******************************************************************************** 2024-02-28T14:27:46,415 ############################ 2024-02-28T14:27:46,415 # Package would be ignored # 2024-02-28T14:27:46,416 ############################ 2024-02-28T14:27:46,416 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2024-02-28T14:27:46,417 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,418 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,419 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2024-02-28T14:27:46,419 to the `packages` configuration field. 2024-02-28T14:27:46,420 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,421 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,421 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,421 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,422 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,423 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2024-02-28T14:27:46,423 already explicitly excluding 'multiqc.modules.sortmerna' via 2024-02-28T14:27:46,423 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,424 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,425 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,427 even if it does not contain any `.py` files. 2024-02-28T14:27:46,427 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,427 directory, all directories are treated like packages. 2024-02-28T14:27:46,428 ******************************************************************************** 2024-02-28T14:27:46,429 !! 2024-02-28T14:27:46,429 check.warn(importable) 2024-02-28T14:27:46,430 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2024-02-28T14:27:46,430 !! 2024-02-28T14:27:46,431 ******************************************************************************** 2024-02-28T14:27:46,432 ############################ 2024-02-28T14:27:46,432 # Package would be ignored # 2024-02-28T14:27:46,433 ############################ 2024-02-28T14:27:46,433 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2024-02-28T14:27:46,434 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,435 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,436 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2024-02-28T14:27:46,436 to the `packages` configuration field. 2024-02-28T14:27:46,437 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,438 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,439 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,440 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2024-02-28T14:27:46,441 already explicitly excluding 'multiqc.modules.sourmash' via 2024-02-28T14:27:46,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,442 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,442 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,443 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,444 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,446 even if it does not contain any `.py` files. 2024-02-28T14:27:46,446 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,446 directory, all directories are treated like packages. 2024-02-28T14:27:46,447 ******************************************************************************** 2024-02-28T14:27:46,447 !! 2024-02-28T14:27:46,448 check.warn(importable) 2024-02-28T14:27:46,448 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2024-02-28T14:27:46,448 !! 2024-02-28T14:27:46,449 ******************************************************************************** 2024-02-28T14:27:46,449 ############################ 2024-02-28T14:27:46,450 # Package would be ignored # 2024-02-28T14:27:46,450 ############################ 2024-02-28T14:27:46,450 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2024-02-28T14:27:46,451 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,452 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,452 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2024-02-28T14:27:46,452 to the `packages` configuration field. 2024-02-28T14:27:46,453 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,454 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,455 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,456 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,458 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2024-02-28T14:27:46,458 already explicitly excluding 'multiqc.modules.spaceranger' via 2024-02-28T14:27:46,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,459 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,460 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,461 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,462 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,463 even if it does not contain any `.py` files. 2024-02-28T14:27:46,464 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,464 directory, all directories are treated like packages. 2024-02-28T14:27:46,465 ******************************************************************************** 2024-02-28T14:27:46,466 !! 2024-02-28T14:27:46,466 check.warn(importable) 2024-02-28T14:27:46,467 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2024-02-28T14:27:46,468 !! 2024-02-28T14:27:46,469 ******************************************************************************** 2024-02-28T14:27:46,469 ############################ 2024-02-28T14:27:46,470 # Package would be ignored # 2024-02-28T14:27:46,470 ############################ 2024-02-28T14:27:46,471 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2024-02-28T14:27:46,472 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,472 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,473 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2024-02-28T14:27:46,473 to the `packages` configuration field. 2024-02-28T14:27:46,474 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,474 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,475 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,476 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,476 If you don't want 'multiqc.modules.stacks' to be distributed and are 2024-02-28T14:27:46,477 already explicitly excluding 'multiqc.modules.stacks' via 2024-02-28T14:27:46,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,478 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,479 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,479 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,482 even if it does not contain any `.py` files. 2024-02-28T14:27:46,482 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,483 directory, all directories are treated like packages. 2024-02-28T14:27:46,483 ******************************************************************************** 2024-02-28T14:27:46,484 !! 2024-02-28T14:27:46,485 check.warn(importable) 2024-02-28T14:27:46,486 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2024-02-28T14:27:46,486 !! 2024-02-28T14:27:46,488 ******************************************************************************** 2024-02-28T14:27:46,488 ############################ 2024-02-28T14:27:46,489 # Package would be ignored # 2024-02-28T14:27:46,489 ############################ 2024-02-28T14:27:46,490 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2024-02-28T14:27:46,490 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,491 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,492 package, please make sure that 'multiqc.modules.star' is explicitly added 2024-02-28T14:27:46,492 to the `packages` configuration field. 2024-02-28T14:27:46,493 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,494 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,495 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,497 If you don't want 'multiqc.modules.star' to be distributed and are 2024-02-28T14:27:46,498 already explicitly excluding 'multiqc.modules.star' via 2024-02-28T14:27:46,498 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,500 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,500 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,501 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,502 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,502 even if it does not contain any `.py` files. 2024-02-28T14:27:46,503 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,503 directory, all directories are treated like packages. 2024-02-28T14:27:46,503 ******************************************************************************** 2024-02-28T14:27:46,504 !! 2024-02-28T14:27:46,505 check.warn(importable) 2024-02-28T14:27:46,505 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2024-02-28T14:27:46,505 !! 2024-02-28T14:27:46,506 ******************************************************************************** 2024-02-28T14:27:46,506 ############################ 2024-02-28T14:27:46,507 # Package would be ignored # 2024-02-28T14:27:46,507 ############################ 2024-02-28T14:27:46,508 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2024-02-28T14:27:46,508 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,510 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,510 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2024-02-28T14:27:46,511 to the `packages` configuration field. 2024-02-28T14:27:46,512 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,513 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,514 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,516 If you don't want 'multiqc.modules.supernova' to be distributed and are 2024-02-28T14:27:46,517 already explicitly excluding 'multiqc.modules.supernova' via 2024-02-28T14:27:46,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,518 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,519 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,522 even if it does not contain any `.py` files. 2024-02-28T14:27:46,523 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,523 directory, all directories are treated like packages. 2024-02-28T14:27:46,524 ******************************************************************************** 2024-02-28T14:27:46,525 !! 2024-02-28T14:27:46,525 check.warn(importable) 2024-02-28T14:27:46,526 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2024-02-28T14:27:46,527 !! 2024-02-28T14:27:46,528 ******************************************************************************** 2024-02-28T14:27:46,528 ############################ 2024-02-28T14:27:46,528 # Package would be ignored # 2024-02-28T14:27:46,529 ############################ 2024-02-28T14:27:46,529 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2024-02-28T14:27:46,529 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,530 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,530 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2024-02-28T14:27:46,531 to the `packages` configuration field. 2024-02-28T14:27:46,532 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,532 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,533 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,535 If you don't want 'multiqc.modules.theta2' to be distributed and are 2024-02-28T14:27:46,535 already explicitly excluding 'multiqc.modules.theta2' via 2024-02-28T14:27:46,536 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,536 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,537 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,538 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,541 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,541 even if it does not contain any `.py` files. 2024-02-28T14:27:46,542 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,542 directory, all directories are treated like packages. 2024-02-28T14:27:46,543 ******************************************************************************** 2024-02-28T14:27:46,544 !! 2024-02-28T14:27:46,544 check.warn(importable) 2024-02-28T14:27:46,545 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2024-02-28T14:27:46,545 !! 2024-02-28T14:27:46,546 ******************************************************************************** 2024-02-28T14:27:46,546 ############################ 2024-02-28T14:27:46,547 # Package would be ignored # 2024-02-28T14:27:46,547 ############################ 2024-02-28T14:27:46,548 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2024-02-28T14:27:46,548 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,549 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,550 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2024-02-28T14:27:46,550 to the `packages` configuration field. 2024-02-28T14:27:46,552 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,552 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,553 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,554 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,555 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,555 If you don't want 'multiqc.modules.tophat' to be distributed and are 2024-02-28T14:27:46,556 already explicitly excluding 'multiqc.modules.tophat' via 2024-02-28T14:27:46,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,556 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,557 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,557 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,559 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,560 even if it does not contain any `.py` files. 2024-02-28T14:27:46,560 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,560 directory, all directories are treated like packages. 2024-02-28T14:27:46,561 ******************************************************************************** 2024-02-28T14:27:46,562 !! 2024-02-28T14:27:46,562 check.warn(importable) 2024-02-28T14:27:46,563 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2024-02-28T14:27:46,563 !! 2024-02-28T14:27:46,564 ******************************************************************************** 2024-02-28T14:27:46,565 ############################ 2024-02-28T14:27:46,566 # Package would be ignored # 2024-02-28T14:27:46,566 ############################ 2024-02-28T14:27:46,566 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2024-02-28T14:27:46,567 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,568 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,569 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2024-02-28T14:27:46,569 to the `packages` configuration field. 2024-02-28T14:27:46,570 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,571 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,572 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,573 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,574 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2024-02-28T14:27:46,574 already explicitly excluding 'multiqc.modules.trimmomatic' via 2024-02-28T14:27:46,575 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,575 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,576 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,577 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,580 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,580 even if it does not contain any `.py` files. 2024-02-28T14:27:46,581 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,581 directory, all directories are treated like packages. 2024-02-28T14:27:46,582 ******************************************************************************** 2024-02-28T14:27:46,582 !! 2024-02-28T14:27:46,583 check.warn(importable) 2024-02-28T14:27:46,583 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2024-02-28T14:27:46,583 !! 2024-02-28T14:27:46,584 ******************************************************************************** 2024-02-28T14:27:46,584 ############################ 2024-02-28T14:27:46,585 # Package would be ignored # 2024-02-28T14:27:46,585 ############################ 2024-02-28T14:27:46,585 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2024-02-28T14:27:46,586 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,586 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,587 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2024-02-28T14:27:46,587 to the `packages` configuration field. 2024-02-28T14:27:46,588 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,589 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,590 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,591 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,591 If you don't want 'multiqc.modules.truvari' to be distributed and are 2024-02-28T14:27:46,592 already explicitly excluding 'multiqc.modules.truvari' via 2024-02-28T14:27:46,592 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,593 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,595 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,596 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,598 even if it does not contain any `.py` files. 2024-02-28T14:27:46,598 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,599 directory, all directories are treated like packages. 2024-02-28T14:27:46,599 ******************************************************************************** 2024-02-28T14:27:46,600 !! 2024-02-28T14:27:46,600 check.warn(importable) 2024-02-28T14:27:46,601 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2024-02-28T14:27:46,601 !! 2024-02-28T14:27:46,602 ******************************************************************************** 2024-02-28T14:27:46,603 ############################ 2024-02-28T14:27:46,603 # Package would be ignored # 2024-02-28T14:27:46,604 ############################ 2024-02-28T14:27:46,604 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2024-02-28T14:27:46,605 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,606 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,607 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2024-02-28T14:27:46,607 to the `packages` configuration field. 2024-02-28T14:27:46,608 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,608 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,609 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,610 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,610 If you don't want 'multiqc.modules.umitools' to be distributed and are 2024-02-28T14:27:46,611 already explicitly excluding 'multiqc.modules.umitools' via 2024-02-28T14:27:46,611 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,612 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,612 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,613 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,615 even if it does not contain any `.py` files. 2024-02-28T14:27:46,615 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,616 directory, all directories are treated like packages. 2024-02-28T14:27:46,616 ******************************************************************************** 2024-02-28T14:27:46,617 !! 2024-02-28T14:27:46,618 check.warn(importable) 2024-02-28T14:27:46,618 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2024-02-28T14:27:46,619 !! 2024-02-28T14:27:46,620 ******************************************************************************** 2024-02-28T14:27:46,620 ############################ 2024-02-28T14:27:46,621 # Package would be ignored # 2024-02-28T14:27:46,621 ############################ 2024-02-28T14:27:46,622 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2024-02-28T14:27:46,622 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,623 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,624 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2024-02-28T14:27:46,624 to the `packages` configuration field. 2024-02-28T14:27:46,625 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,626 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,627 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,628 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,629 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2024-02-28T14:27:46,630 already explicitly excluding 'multiqc.modules.varscan2' via 2024-02-28T14:27:46,630 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,631 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,632 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,633 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,634 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,635 even if it does not contain any `.py` files. 2024-02-28T14:27:46,635 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,636 directory, all directories are treated like packages. 2024-02-28T14:27:46,636 ******************************************************************************** 2024-02-28T14:27:46,637 !! 2024-02-28T14:27:46,637 check.warn(importable) 2024-02-28T14:27:46,638 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2024-02-28T14:27:46,638 !! 2024-02-28T14:27:46,639 ******************************************************************************** 2024-02-28T14:27:46,639 ############################ 2024-02-28T14:27:46,640 # Package would be ignored # 2024-02-28T14:27:46,640 ############################ 2024-02-28T14:27:46,640 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2024-02-28T14:27:46,641 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,642 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,642 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2024-02-28T14:27:46,642 to the `packages` configuration field. 2024-02-28T14:27:46,644 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,645 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,646 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,647 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,648 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2024-02-28T14:27:46,649 already explicitly excluding 'multiqc.modules.vcftools' via 2024-02-28T14:27:46,649 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,650 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,651 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,652 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,653 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,654 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,654 even if it does not contain any `.py` files. 2024-02-28T14:27:46,655 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,656 directory, all directories are treated like packages. 2024-02-28T14:27:46,656 ******************************************************************************** 2024-02-28T14:27:46,657 !! 2024-02-28T14:27:46,658 check.warn(importable) 2024-02-28T14:27:46,658 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2024-02-28T14:27:46,659 !! 2024-02-28T14:27:46,660 ******************************************************************************** 2024-02-28T14:27:46,660 ############################ 2024-02-28T14:27:46,661 # Package would be ignored # 2024-02-28T14:27:46,661 ############################ 2024-02-28T14:27:46,662 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2024-02-28T14:27:46,662 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,663 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,663 package, please make sure that 'multiqc.modules.vep' is explicitly added 2024-02-28T14:27:46,663 to the `packages` configuration field. 2024-02-28T14:27:46,664 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,665 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,666 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,666 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,667 If you don't want 'multiqc.modules.vep' to be distributed and are 2024-02-28T14:27:46,667 already explicitly excluding 'multiqc.modules.vep' via 2024-02-28T14:27:46,668 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,668 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,668 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,669 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,672 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,672 even if it does not contain any `.py` files. 2024-02-28T14:27:46,673 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,673 directory, all directories are treated like packages. 2024-02-28T14:27:46,674 ******************************************************************************** 2024-02-28T14:27:46,675 !! 2024-02-28T14:27:46,676 check.warn(importable) 2024-02-28T14:27:46,676 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2024-02-28T14:27:46,677 !! 2024-02-28T14:27:46,678 ******************************************************************************** 2024-02-28T14:27:46,678 ############################ 2024-02-28T14:27:46,679 # Package would be ignored # 2024-02-28T14:27:46,679 ############################ 2024-02-28T14:27:46,680 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2024-02-28T14:27:46,680 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,681 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,681 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2024-02-28T14:27:46,682 to the `packages` configuration field. 2024-02-28T14:27:46,683 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,683 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,684 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,685 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,687 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2024-02-28T14:27:46,688 already explicitly excluding 'multiqc.modules.verifybamid' via 2024-02-28T14:27:46,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,689 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,689 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,691 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,692 even if it does not contain any `.py` files. 2024-02-28T14:27:46,692 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,692 directory, all directories are treated like packages. 2024-02-28T14:27:46,693 ******************************************************************************** 2024-02-28T14:27:46,693 !! 2024-02-28T14:27:46,694 check.warn(importable) 2024-02-28T14:27:46,694 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2024-02-28T14:27:46,694 !! 2024-02-28T14:27:46,695 ******************************************************************************** 2024-02-28T14:27:46,696 ############################ 2024-02-28T14:27:46,696 # Package would be ignored # 2024-02-28T14:27:46,697 ############################ 2024-02-28T14:27:46,698 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2024-02-28T14:27:46,698 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,699 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,699 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2024-02-28T14:27:46,700 to the `packages` configuration field. 2024-02-28T14:27:46,701 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,701 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,702 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,703 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,704 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,705 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2024-02-28T14:27:46,706 already explicitly excluding 'multiqc.modules.whatshap' via 2024-02-28T14:27:46,706 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,707 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,707 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,708 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,709 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,711 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,712 even if it does not contain any `.py` files. 2024-02-28T14:27:46,712 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,713 directory, all directories are treated like packages. 2024-02-28T14:27:46,713 ******************************************************************************** 2024-02-28T14:27:46,715 !! 2024-02-28T14:27:46,715 check.warn(importable) 2024-02-28T14:27:46,716 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2024-02-28T14:27:46,716 !! 2024-02-28T14:27:46,717 ******************************************************************************** 2024-02-28T14:27:46,717 ############################ 2024-02-28T14:27:46,717 # Package would be ignored # 2024-02-28T14:27:46,718 ############################ 2024-02-28T14:27:46,718 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2024-02-28T14:27:46,718 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,719 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,719 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2024-02-28T14:27:46,720 to the `packages` configuration field. 2024-02-28T14:27:46,720 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,721 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,721 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,722 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,723 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2024-02-28T14:27:46,724 already explicitly excluding 'multiqc.modules.xengsort' via 2024-02-28T14:27:46,725 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,725 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,726 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,727 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,728 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,729 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,730 even if it does not contain any `.py` files. 2024-02-28T14:27:46,730 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,731 directory, all directories are treated like packages. 2024-02-28T14:27:46,732 ******************************************************************************** 2024-02-28T14:27:46,732 !! 2024-02-28T14:27:46,733 check.warn(importable) 2024-02-28T14:27:46,733 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2024-02-28T14:27:46,734 !! 2024-02-28T14:27:46,735 ******************************************************************************** 2024-02-28T14:27:46,735 ############################ 2024-02-28T14:27:46,736 # Package would be ignored # 2024-02-28T14:27:46,736 ############################ 2024-02-28T14:27:46,737 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2024-02-28T14:27:46,737 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,738 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,739 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2024-02-28T14:27:46,739 to the `packages` configuration field. 2024-02-28T14:27:46,740 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,740 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,741 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,741 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,742 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,743 If you don't want 'multiqc.modules.xenome' to be distributed and are 2024-02-28T14:27:46,743 already explicitly excluding 'multiqc.modules.xenome' via 2024-02-28T14:27:46,743 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,744 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,744 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,745 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,745 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,747 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,747 even if it does not contain any `.py` files. 2024-02-28T14:27:46,748 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,748 directory, all directories are treated like packages. 2024-02-28T14:27:46,748 ******************************************************************************** 2024-02-28T14:27:46,749 !! 2024-02-28T14:27:46,749 check.warn(importable) 2024-02-28T14:27:46,750 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2024-02-28T14:27:46,750 !! 2024-02-28T14:27:46,751 ******************************************************************************** 2024-02-28T14:27:46,752 ############################ 2024-02-28T14:27:46,752 # Package would be ignored # 2024-02-28T14:27:46,752 ############################ 2024-02-28T14:27:46,753 Python recognizes 'multiqc.plots' as an importable package[^1], 2024-02-28T14:27:46,753 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,755 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,755 package, please make sure that 'multiqc.plots' is explicitly added 2024-02-28T14:27:46,756 to the `packages` configuration field. 2024-02-28T14:27:46,757 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,758 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,759 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,761 If you don't want 'multiqc.plots' to be distributed and are 2024-02-28T14:27:46,761 already explicitly excluding 'multiqc.plots' via 2024-02-28T14:27:46,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,762 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,763 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,764 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,767 even if it does not contain any `.py` files. 2024-02-28T14:27:46,768 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,768 directory, all directories are treated like packages. 2024-02-28T14:27:46,769 ******************************************************************************** 2024-02-28T14:27:46,769 !! 2024-02-28T14:27:46,770 check.warn(importable) 2024-02-28T14:27:46,770 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.plots.plotly' is absent from the `packages` configuration. 2024-02-28T14:27:46,770 !! 2024-02-28T14:27:46,771 ******************************************************************************** 2024-02-28T14:27:46,771 ############################ 2024-02-28T14:27:46,772 # Package would be ignored # 2024-02-28T14:27:46,772 ############################ 2024-02-28T14:27:46,772 Python recognizes 'multiqc.plots.plotly' as an importable package[^1], 2024-02-28T14:27:46,773 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,774 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,774 package, please make sure that 'multiqc.plots.plotly' is explicitly added 2024-02-28T14:27:46,774 to the `packages` configuration field. 2024-02-28T14:27:46,775 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,775 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,776 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,777 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,779 If you don't want 'multiqc.plots.plotly' to be distributed and are 2024-02-28T14:27:46,779 already explicitly excluding 'multiqc.plots.plotly' via 2024-02-28T14:27:46,780 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,780 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,781 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,782 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,784 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,785 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,786 even if it does not contain any `.py` files. 2024-02-28T14:27:46,786 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,787 directory, all directories are treated like packages. 2024-02-28T14:27:46,787 ******************************************************************************** 2024-02-28T14:27:46,788 !! 2024-02-28T14:27:46,788 check.warn(importable) 2024-02-28T14:27:46,789 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2024-02-28T14:27:46,789 !! 2024-02-28T14:27:46,790 ******************************************************************************** 2024-02-28T14:27:46,791 ############################ 2024-02-28T14:27:46,791 # Package would be ignored # 2024-02-28T14:27:46,792 ############################ 2024-02-28T14:27:46,792 Python recognizes 'multiqc.templates' as an importable package[^1], 2024-02-28T14:27:46,793 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,794 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,795 package, please make sure that 'multiqc.templates' is explicitly added 2024-02-28T14:27:46,795 to the `packages` configuration field. 2024-02-28T14:27:46,796 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,796 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,797 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,797 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,799 If you don't want 'multiqc.templates' to be distributed and are 2024-02-28T14:27:46,799 already explicitly excluding 'multiqc.templates' via 2024-02-28T14:27:46,799 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,800 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,800 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,801 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,803 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,803 even if it does not contain any `.py` files. 2024-02-28T14:27:46,804 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,804 directory, all directories are treated like packages. 2024-02-28T14:27:46,805 ******************************************************************************** 2024-02-28T14:27:46,806 !! 2024-02-28T14:27:46,806 check.warn(importable) 2024-02-28T14:27:46,807 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2024-02-28T14:27:46,807 !! 2024-02-28T14:27:46,808 ******************************************************************************** 2024-02-28T14:27:46,809 ############################ 2024-02-28T14:27:46,809 # Package would be ignored # 2024-02-28T14:27:46,810 ############################ 2024-02-28T14:27:46,810 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2024-02-28T14:27:46,811 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,812 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,812 package, please make sure that 'multiqc.templates.default' is explicitly added 2024-02-28T14:27:46,813 to the `packages` configuration field. 2024-02-28T14:27:46,814 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,815 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,816 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,818 If you don't want 'multiqc.templates.default' to be distributed and are 2024-02-28T14:27:46,818 already explicitly excluding 'multiqc.templates.default' via 2024-02-28T14:27:46,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,820 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,821 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,823 even if it does not contain any `.py` files. 2024-02-28T14:27:46,823 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,824 directory, all directories are treated like packages. 2024-02-28T14:27:46,824 ******************************************************************************** 2024-02-28T14:27:46,825 !! 2024-02-28T14:27:46,825 check.warn(importable) 2024-02-28T14:27:46,826 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.css' is absent from the `packages` configuration. 2024-02-28T14:27:46,826 !! 2024-02-28T14:27:46,827 ******************************************************************************** 2024-02-28T14:27:46,827 ############################ 2024-02-28T14:27:46,828 # Package would be ignored # 2024-02-28T14:27:46,828 ############################ 2024-02-28T14:27:46,828 Python recognizes 'multiqc.templates.default.assets.css' as an importable package[^1], 2024-02-28T14:27:46,829 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,830 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,830 package, please make sure that 'multiqc.templates.default.assets.css' is explicitly added 2024-02-28T14:27:46,831 to the `packages` configuration field. 2024-02-28T14:27:46,832 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,832 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,833 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,834 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,835 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,836 If you don't want 'multiqc.templates.default.assets.css' to be distributed and are 2024-02-28T14:27:46,836 already explicitly excluding 'multiqc.templates.default.assets.css' via 2024-02-28T14:27:46,837 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,838 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,839 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,841 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,842 even if it does not contain any `.py` files. 2024-02-28T14:27:46,842 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,843 directory, all directories are treated like packages. 2024-02-28T14:27:46,843 ******************************************************************************** 2024-02-28T14:27:46,844 !! 2024-02-28T14:27:46,845 check.warn(importable) 2024-02-28T14:27:46,845 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.fonts' is absent from the `packages` configuration. 2024-02-28T14:27:46,846 !! 2024-02-28T14:27:46,847 ******************************************************************************** 2024-02-28T14:27:46,847 ############################ 2024-02-28T14:27:46,848 # Package would be ignored # 2024-02-28T14:27:46,848 ############################ 2024-02-28T14:27:46,848 Python recognizes 'multiqc.templates.default.assets.fonts' as an importable package[^1], 2024-02-28T14:27:46,849 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,849 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,850 package, please make sure that 'multiqc.templates.default.assets.fonts' is explicitly added 2024-02-28T14:27:46,850 to the `packages` configuration field. 2024-02-28T14:27:46,851 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,851 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,852 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,852 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,853 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,854 If you don't want 'multiqc.templates.default.assets.fonts' to be distributed and are 2024-02-28T14:27:46,855 already explicitly excluding 'multiqc.templates.default.assets.fonts' via 2024-02-28T14:27:46,855 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,856 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,856 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,857 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,858 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,860 even if it does not contain any `.py` files. 2024-02-28T14:27:46,861 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,861 directory, all directories are treated like packages. 2024-02-28T14:27:46,862 ******************************************************************************** 2024-02-28T14:27:46,863 !! 2024-02-28T14:27:46,864 check.warn(importable) 2024-02-28T14:27:46,864 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2024-02-28T14:27:46,865 !! 2024-02-28T14:27:46,866 ******************************************************************************** 2024-02-28T14:27:46,866 ############################ 2024-02-28T14:27:46,866 # Package would be ignored # 2024-02-28T14:27:46,867 ############################ 2024-02-28T14:27:46,868 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2024-02-28T14:27:46,868 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,869 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,870 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2024-02-28T14:27:46,870 to the `packages` configuration field. 2024-02-28T14:27:46,871 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,872 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,872 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,873 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,874 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,875 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2024-02-28T14:27:46,875 already explicitly excluding 'multiqc.templates.default.assets.img' via 2024-02-28T14:27:46,876 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,876 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,876 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,877 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,878 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,879 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,880 even if it does not contain any `.py` files. 2024-02-28T14:27:46,880 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,880 directory, all directories are treated like packages. 2024-02-28T14:27:46,881 ******************************************************************************** 2024-02-28T14:27:46,882 !! 2024-02-28T14:27:46,882 check.warn(importable) 2024-02-28T14:27:46,883 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.js' is absent from the `packages` configuration. 2024-02-28T14:27:46,883 !! 2024-02-28T14:27:46,884 ******************************************************************************** 2024-02-28T14:27:46,885 ############################ 2024-02-28T14:27:46,885 # Package would be ignored # 2024-02-28T14:27:46,886 ############################ 2024-02-28T14:27:46,886 Python recognizes 'multiqc.templates.default.assets.js' as an importable package[^1], 2024-02-28T14:27:46,887 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,888 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,888 package, please make sure that 'multiqc.templates.default.assets.js' is explicitly added 2024-02-28T14:27:46,889 to the `packages` configuration field. 2024-02-28T14:27:46,890 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,890 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,891 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,892 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,893 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,894 If you don't want 'multiqc.templates.default.assets.js' to be distributed and are 2024-02-28T14:27:46,894 already explicitly excluding 'multiqc.templates.default.assets.js' via 2024-02-28T14:27:46,895 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,895 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,896 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,897 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,898 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,900 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,900 even if it does not contain any `.py` files. 2024-02-28T14:27:46,901 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,901 directory, all directories are treated like packages. 2024-02-28T14:27:46,902 ******************************************************************************** 2024-02-28T14:27:46,902 !! 2024-02-28T14:27:46,903 check.warn(importable) 2024-02-28T14:27:46,903 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2024-02-28T14:27:46,904 !! 2024-02-28T14:27:46,905 ******************************************************************************** 2024-02-28T14:27:46,905 ############################ 2024-02-28T14:27:46,906 # Package would be ignored # 2024-02-28T14:27:46,906 ############################ 2024-02-28T14:27:46,906 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2024-02-28T14:27:46,907 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,908 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,908 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2024-02-28T14:27:46,909 to the `packages` configuration field. 2024-02-28T14:27:46,909 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,910 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,910 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,911 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,912 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,913 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2024-02-28T14:27:46,914 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2024-02-28T14:27:46,914 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,915 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,915 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,916 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,917 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,919 even if it does not contain any `.py` files. 2024-02-28T14:27:46,920 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,920 directory, all directories are treated like packages. 2024-02-28T14:27:46,921 ******************************************************************************** 2024-02-28T14:27:46,922 !! 2024-02-28T14:27:46,922 check.warn(importable) 2024-02-28T14:27:46,923 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.default.assets.js.plots' is absent from the `packages` configuration. 2024-02-28T14:27:46,923 !! 2024-02-28T14:27:46,924 ******************************************************************************** 2024-02-28T14:27:46,925 ############################ 2024-02-28T14:27:46,925 # Package would be ignored # 2024-02-28T14:27:46,926 ############################ 2024-02-28T14:27:46,927 Python recognizes 'multiqc.templates.default.assets.js.plots' as an importable package[^1], 2024-02-28T14:27:46,927 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,928 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,929 package, please make sure that 'multiqc.templates.default.assets.js.plots' is explicitly added 2024-02-28T14:27:46,929 to the `packages` configuration field. 2024-02-28T14:27:46,930 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,931 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,932 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,933 If you don't want 'multiqc.templates.default.assets.js.plots' to be distributed and are 2024-02-28T14:27:46,934 already explicitly excluding 'multiqc.templates.default.assets.js.plots' via 2024-02-28T14:27:46,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,935 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,936 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,939 even if it does not contain any `.py` files. 2024-02-28T14:27:46,939 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,940 directory, all directories are treated like packages. 2024-02-28T14:27:46,940 ******************************************************************************** 2024-02-28T14:27:46,941 !! 2024-02-28T14:27:46,941 check.warn(importable) 2024-02-28T14:27:46,942 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2024-02-28T14:27:46,942 !! 2024-02-28T14:27:46,943 ******************************************************************************** 2024-02-28T14:27:46,944 ############################ 2024-02-28T14:27:46,944 # Package would be ignored # 2024-02-28T14:27:46,945 ############################ 2024-02-28T14:27:46,945 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2024-02-28T14:27:46,946 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,947 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,947 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2024-02-28T14:27:46,948 to the `packages` configuration field. 2024-02-28T14:27:46,949 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,950 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,951 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,953 If you don't want 'multiqc.templates.gathered' to be distributed and are 2024-02-28T14:27:46,953 already explicitly excluding 'multiqc.templates.gathered' via 2024-02-28T14:27:46,954 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,955 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,955 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,956 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,957 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,958 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,958 even if it does not contain any `.py` files. 2024-02-28T14:27:46,959 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,959 directory, all directories are treated like packages. 2024-02-28T14:27:46,959 ******************************************************************************** 2024-02-28T14:27:46,960 !! 2024-02-28T14:27:46,961 check.warn(importable) 2024-02-28T14:27:46,961 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2024-02-28T14:27:46,962 !! 2024-02-28T14:27:46,962 ******************************************************************************** 2024-02-28T14:27:46,963 ############################ 2024-02-28T14:27:46,963 # Package would be ignored # 2024-02-28T14:27:46,964 ############################ 2024-02-28T14:27:46,964 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2024-02-28T14:27:46,965 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,965 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,966 package, please make sure that 'multiqc.templates.geo' is explicitly added 2024-02-28T14:27:46,966 to the `packages` configuration field. 2024-02-28T14:27:46,967 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,968 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,969 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,971 If you don't want 'multiqc.templates.geo' to be distributed and are 2024-02-28T14:27:46,972 already explicitly excluding 'multiqc.templates.geo' via 2024-02-28T14:27:46,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,973 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,973 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,974 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,977 even if it does not contain any `.py` files. 2024-02-28T14:27:46,978 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,978 directory, all directories are treated like packages. 2024-02-28T14:27:46,978 ******************************************************************************** 2024-02-28T14:27:46,980 !! 2024-02-28T14:27:46,980 check.warn(importable) 2024-02-28T14:27:46,981 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2024-02-28T14:27:46,981 !! 2024-02-28T14:27:46,982 ******************************************************************************** 2024-02-28T14:27:46,983 ############################ 2024-02-28T14:27:46,983 # Package would be ignored # 2024-02-28T14:27:46,983 ############################ 2024-02-28T14:27:46,984 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2024-02-28T14:27:46,984 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:46,985 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:46,986 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2024-02-28T14:27:46,986 to the `packages` configuration field. 2024-02-28T14:27:46,987 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:46,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:46,988 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:46,988 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:46,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:46,991 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2024-02-28T14:27:46,991 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2024-02-28T14:27:46,992 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:46,992 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:46,992 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:46,993 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:46,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:46,996 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:46,997 even if it does not contain any `.py` files. 2024-02-28T14:27:46,997 On the other hand, currently there is no concept of package data 2024-02-28T14:27:46,997 directory, all directories are treated like packages. 2024-02-28T14:27:46,998 ******************************************************************************** 2024-02-28T14:27:46,999 !! 2024-02-28T14:27:46,999 check.warn(importable) 2024-02-28T14:27:47,000 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2024-02-28T14:27:47,000 !! 2024-02-28T14:27:47,001 ******************************************************************************** 2024-02-28T14:27:47,002 ############################ 2024-02-28T14:27:47,002 # Package would be ignored # 2024-02-28T14:27:47,003 ############################ 2024-02-28T14:27:47,003 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2024-02-28T14:27:47,004 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,005 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,005 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2024-02-28T14:27:47,006 to the `packages` configuration field. 2024-02-28T14:27:47,007 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,007 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,008 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,009 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,010 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,011 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2024-02-28T14:27:47,011 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2024-02-28T14:27:47,012 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,012 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,012 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,013 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,014 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,016 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,016 even if it does not contain any `.py` files. 2024-02-28T14:27:47,016 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,017 directory, all directories are treated like packages. 2024-02-28T14:27:47,017 ******************************************************************************** 2024-02-28T14:27:47,018 !! 2024-02-28T14:27:47,019 check.warn(importable) 2024-02-28T14:27:47,019 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.highcharts' is absent from the `packages` configuration. 2024-02-28T14:27:47,020 !! 2024-02-28T14:27:47,020 ******************************************************************************** 2024-02-28T14:27:47,021 ############################ 2024-02-28T14:27:47,021 # Package would be ignored # 2024-02-28T14:27:47,022 ############################ 2024-02-28T14:27:47,022 Python recognizes 'multiqc.templates.highcharts' as an importable package[^1], 2024-02-28T14:27:47,023 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,024 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,024 package, please make sure that 'multiqc.templates.highcharts' is explicitly added 2024-02-28T14:27:47,025 to the `packages` configuration field. 2024-02-28T14:27:47,026 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,026 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,027 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,028 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,029 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,030 If you don't want 'multiqc.templates.highcharts' to be distributed and are 2024-02-28T14:27:47,030 already explicitly excluding 'multiqc.templates.highcharts' via 2024-02-28T14:27:47,031 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,031 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,032 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,033 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,034 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,035 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,036 even if it does not contain any `.py` files. 2024-02-28T14:27:47,036 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,037 directory, all directories are treated like packages. 2024-02-28T14:27:47,037 ******************************************************************************** 2024-02-28T14:27:47,038 !! 2024-02-28T14:27:47,038 check.warn(importable) 2024-02-28T14:27:47,039 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.highcharts.assets.css' is absent from the `packages` configuration. 2024-02-28T14:27:47,039 !! 2024-02-28T14:27:47,040 ******************************************************************************** 2024-02-28T14:27:47,040 ############################ 2024-02-28T14:27:47,041 # Package would be ignored # 2024-02-28T14:27:47,041 ############################ 2024-02-28T14:27:47,042 Python recognizes 'multiqc.templates.highcharts.assets.css' as an importable package[^1], 2024-02-28T14:27:47,042 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,043 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,043 package, please make sure that 'multiqc.templates.highcharts.assets.css' is explicitly added 2024-02-28T14:27:47,044 to the `packages` configuration field. 2024-02-28T14:27:47,045 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,045 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,045 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,046 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,047 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,048 If you don't want 'multiqc.templates.highcharts.assets.css' to be distributed and are 2024-02-28T14:27:47,049 already explicitly excluding 'multiqc.templates.highcharts.assets.css' via 2024-02-28T14:27:47,049 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,050 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,050 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,051 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,054 even if it does not contain any `.py` files. 2024-02-28T14:27:47,055 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,055 directory, all directories are treated like packages. 2024-02-28T14:27:47,056 ******************************************************************************** 2024-02-28T14:27:47,057 !! 2024-02-28T14:27:47,057 check.warn(importable) 2024-02-28T14:27:47,058 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.highcharts.assets.js' is absent from the `packages` configuration. 2024-02-28T14:27:47,058 !! 2024-02-28T14:27:47,059 ******************************************************************************** 2024-02-28T14:27:47,060 ############################ 2024-02-28T14:27:47,060 # Package would be ignored # 2024-02-28T14:27:47,061 ############################ 2024-02-28T14:27:47,061 Python recognizes 'multiqc.templates.highcharts.assets.js' as an importable package[^1], 2024-02-28T14:27:47,062 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,063 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,063 package, please make sure that 'multiqc.templates.highcharts.assets.js' is explicitly added 2024-02-28T14:27:47,064 to the `packages` configuration field. 2024-02-28T14:27:47,065 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,065 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,066 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,066 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,068 If you don't want 'multiqc.templates.highcharts.assets.js' to be distributed and are 2024-02-28T14:27:47,068 already explicitly excluding 'multiqc.templates.highcharts.assets.js' via 2024-02-28T14:27:47,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,070 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,071 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,074 even if it does not contain any `.py` files. 2024-02-28T14:27:47,074 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,075 directory, all directories are treated like packages. 2024-02-28T14:27:47,075 ******************************************************************************** 2024-02-28T14:27:47,076 !! 2024-02-28T14:27:47,077 check.warn(importable) 2024-02-28T14:27:47,077 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.highcharts.assets.js.packages' is absent from the `packages` configuration. 2024-02-28T14:27:47,077 !! 2024-02-28T14:27:47,078 ******************************************************************************** 2024-02-28T14:27:47,079 ############################ 2024-02-28T14:27:47,080 # Package would be ignored # 2024-02-28T14:27:47,080 ############################ 2024-02-28T14:27:47,080 Python recognizes 'multiqc.templates.highcharts.assets.js.packages' as an importable package[^1], 2024-02-28T14:27:47,081 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,082 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,083 package, please make sure that 'multiqc.templates.highcharts.assets.js.packages' is explicitly added 2024-02-28T14:27:47,083 to the `packages` configuration field. 2024-02-28T14:27:47,084 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,085 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,086 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,088 If you don't want 'multiqc.templates.highcharts.assets.js.packages' to be distributed and are 2024-02-28T14:27:47,089 already explicitly excluding 'multiqc.templates.highcharts.assets.js.packages' via 2024-02-28T14:27:47,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,090 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,091 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,093 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,093 even if it does not contain any `.py` files. 2024-02-28T14:27:47,094 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,094 directory, all directories are treated like packages. 2024-02-28T14:27:47,094 ******************************************************************************** 2024-02-28T14:27:47,095 !! 2024-02-28T14:27:47,096 check.warn(importable) 2024-02-28T14:27:47,096 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.highcharts.plots' is absent from the `packages` configuration. 2024-02-28T14:27:47,097 !! 2024-02-28T14:27:47,098 ******************************************************************************** 2024-02-28T14:27:47,098 ############################ 2024-02-28T14:27:47,098 # Package would be ignored # 2024-02-28T14:27:47,099 ############################ 2024-02-28T14:27:47,099 Python recognizes 'multiqc.templates.highcharts.plots' as an importable package[^1], 2024-02-28T14:27:47,100 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,101 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,101 package, please make sure that 'multiqc.templates.highcharts.plots' is explicitly added 2024-02-28T14:27:47,101 to the `packages` configuration field. 2024-02-28T14:27:47,102 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,103 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,104 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,106 If you don't want 'multiqc.templates.highcharts.plots' to be distributed and are 2024-02-28T14:27:47,107 already explicitly excluding 'multiqc.templates.highcharts.plots' via 2024-02-28T14:27:47,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,108 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,109 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,110 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,112 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,112 even if it does not contain any `.py` files. 2024-02-28T14:27:47,113 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,113 directory, all directories are treated like packages. 2024-02-28T14:27:47,114 ******************************************************************************** 2024-02-28T14:27:47,115 !! 2024-02-28T14:27:47,116 check.warn(importable) 2024-02-28T14:27:47,116 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2024-02-28T14:27:47,116 !! 2024-02-28T14:27:47,117 ******************************************************************************** 2024-02-28T14:27:47,118 ############################ 2024-02-28T14:27:47,118 # Package would be ignored # 2024-02-28T14:27:47,118 ############################ 2024-02-28T14:27:47,119 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2024-02-28T14:27:47,119 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,120 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,121 package, please make sure that 'multiqc.templates.sections' is explicitly added 2024-02-28T14:27:47,121 to the `packages` configuration field. 2024-02-28T14:27:47,122 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,122 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,123 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,124 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,125 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,126 If you don't want 'multiqc.templates.sections' to be distributed and are 2024-02-28T14:27:47,126 already explicitly excluding 'multiqc.templates.sections' via 2024-02-28T14:27:47,127 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,128 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,128 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,129 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,130 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,131 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,132 even if it does not contain any `.py` files. 2024-02-28T14:27:47,132 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,133 directory, all directories are treated like packages. 2024-02-28T14:27:47,133 ******************************************************************************** 2024-02-28T14:27:47,134 !! 2024-02-28T14:27:47,135 check.warn(importable) 2024-02-28T14:27:47,136 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2024-02-28T14:27:47,136 !! 2024-02-28T14:27:47,137 ******************************************************************************** 2024-02-28T14:27:47,138 ############################ 2024-02-28T14:27:47,138 # Package would be ignored # 2024-02-28T14:27:47,139 ############################ 2024-02-28T14:27:47,139 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2024-02-28T14:27:47,140 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,141 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,142 package, please make sure that 'multiqc.templates.simple' is explicitly added 2024-02-28T14:27:47,142 to the `packages` configuration field. 2024-02-28T14:27:47,143 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,145 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,146 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,146 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,147 If you don't want 'multiqc.templates.simple' to be distributed and are 2024-02-28T14:27:47,148 already explicitly excluding 'multiqc.templates.simple' via 2024-02-28T14:27:47,148 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,149 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,149 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,150 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,151 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,152 even if it does not contain any `.py` files. 2024-02-28T14:27:47,153 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,153 directory, all directories are treated like packages. 2024-02-28T14:27:47,154 ******************************************************************************** 2024-02-28T14:27:47,155 !! 2024-02-28T14:27:47,155 check.warn(importable) 2024-02-28T14:27:47,156 /tmp/pip-build-env-mzvjk_dw/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2024-02-28T14:27:47,156 !! 2024-02-28T14:27:47,157 ******************************************************************************** 2024-02-28T14:27:47,158 ############################ 2024-02-28T14:27:47,158 # Package would be ignored # 2024-02-28T14:27:47,158 ############################ 2024-02-28T14:27:47,159 Python recognizes 'multiqc.utils' as an importable package[^1], 2024-02-28T14:27:47,159 but it is absent from setuptools' `packages` configuration. 2024-02-28T14:27:47,160 This leads to an ambiguous overall configuration. If you want to distribute this 2024-02-28T14:27:47,161 package, please make sure that 'multiqc.utils' is explicitly added 2024-02-28T14:27:47,161 to the `packages` configuration field. 2024-02-28T14:27:47,162 Alternatively, you can also rely on setuptools' discovery methods 2024-02-28T14:27:47,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-02-28T14:27:47,163 instead of `find_packages(...)`/`find:`). 2024-02-28T14:27:47,164 You can read more about "package discovery" on setuptools documentation page: 2024-02-28T14:27:47,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-02-28T14:27:47,166 If you don't want 'multiqc.utils' to be distributed and are 2024-02-28T14:27:47,166 already explicitly excluding 'multiqc.utils' via 2024-02-28T14:27:47,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-02-28T14:27:47,168 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-02-28T14:27:47,168 combination with a more fine grained `package-data` configuration. 2024-02-28T14:27:47,169 You can read more about "package data files" on setuptools documentation page: 2024-02-28T14:27:47,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-02-28T14:27:47,172 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-02-28T14:27:47,172 even if it does not contain any `.py` files. 2024-02-28T14:27:47,173 On the other hand, currently there is no concept of package data 2024-02-28T14:27:47,173 directory, all directories are treated like packages. 2024-02-28T14:27:47,174 ******************************************************************************** 2024-02-28T14:27:47,175 !! 2024-02-28T14:27:47,175 check.warn(importable) 2024-02-28T14:27:47,176 creating build/lib/multiqc/modules 2024-02-28T14:27:47,176 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2024-02-28T14:27:47,177 copying multiqc/modules/base_module.py -> build/lib/multiqc/modules 2024-02-28T14:27:47,177 copying multiqc/modules/profile_runtime.py -> build/lib/multiqc/modules 2024-02-28T14:27:47,178 copying multiqc/modules/software_versions.py -> build/lib/multiqc/modules 2024-02-28T14:27:47,178 creating build/lib/multiqc/modules/adapterRemoval 2024-02-28T14:27:47,179 copying multiqc/modules/adapterRemoval/__init__.py -> build/lib/multiqc/modules/adapterRemoval 2024-02-28T14:27:47,179 copying multiqc/modules/adapterRemoval/adapterRemoval.py -> build/lib/multiqc/modules/adapterRemoval 2024-02-28T14:27:47,180 creating build/lib/multiqc/modules/afterqc 2024-02-28T14:27:47,180 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2024-02-28T14:27:47,181 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2024-02-28T14:27:47,181 creating build/lib/multiqc/modules/anglerfish 2024-02-28T14:27:47,181 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2024-02-28T14:27:47,182 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2024-02-28T14:27:47,182 creating build/lib/multiqc/modules/bakta 2024-02-28T14:27:47,183 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2024-02-28T14:27:47,183 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2024-02-28T14:27:47,184 creating build/lib/multiqc/modules/bamdst 2024-02-28T14:27:47,184 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2024-02-28T14:27:47,185 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2024-02-28T14:27:47,185 creating build/lib/multiqc/modules/bamtools 2024-02-28T14:27:47,186 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2024-02-28T14:27:47,186 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2024-02-28T14:27:47,187 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2024-02-28T14:27:47,187 creating build/lib/multiqc/modules/bbduk 2024-02-28T14:27:47,188 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2024-02-28T14:27:47,188 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2024-02-28T14:27:47,189 creating build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,189 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,190 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,190 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,191 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,191 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,192 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,192 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,193 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,193 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,194 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,194 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,195 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,195 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,196 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,196 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2024-02-28T14:27:47,197 creating build/lib/multiqc/modules/bcftools 2024-02-28T14:27:47,197 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2024-02-28T14:27:47,198 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2024-02-28T14:27:47,198 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2024-02-28T14:27:47,198 creating build/lib/multiqc/modules/bcl2fastq 2024-02-28T14:27:47,199 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2024-02-28T14:27:47,199 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2024-02-28T14:27:47,200 creating build/lib/multiqc/modules/bclconvert 2024-02-28T14:27:47,200 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2024-02-28T14:27:47,200 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2024-02-28T14:27:47,201 creating build/lib/multiqc/modules/biobambam2 2024-02-28T14:27:47,201 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2024-02-28T14:27:47,202 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2024-02-28T14:27:47,202 creating build/lib/multiqc/modules/biobloomtools 2024-02-28T14:27:47,203 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2024-02-28T14:27:47,203 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2024-02-28T14:27:47,204 creating build/lib/multiqc/modules/biscuit 2024-02-28T14:27:47,204 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2024-02-28T14:27:47,205 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2024-02-28T14:27:47,205 creating build/lib/multiqc/modules/bismark 2024-02-28T14:27:47,206 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2024-02-28T14:27:47,206 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2024-02-28T14:27:47,206 creating build/lib/multiqc/modules/bowtie1 2024-02-28T14:27:47,207 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2024-02-28T14:27:47,208 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2024-02-28T14:27:47,208 creating build/lib/multiqc/modules/bowtie2 2024-02-28T14:27:47,208 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2024-02-28T14:27:47,209 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2024-02-28T14:27:47,209 creating build/lib/multiqc/modules/bracken 2024-02-28T14:27:47,210 copying multiqc/modules/bracken/__init__.py -> build/lib/multiqc/modules/bracken 2024-02-28T14:27:47,210 copying multiqc/modules/bracken/bracken.py -> build/lib/multiqc/modules/bracken 2024-02-28T14:27:47,211 creating build/lib/multiqc/modules/busco 2024-02-28T14:27:47,212 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2024-02-28T14:27:47,212 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2024-02-28T14:27:47,213 creating build/lib/multiqc/modules/bustools 2024-02-28T14:27:47,213 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2024-02-28T14:27:47,214 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2024-02-28T14:27:47,214 creating build/lib/multiqc/modules/ccs 2024-02-28T14:27:47,215 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2024-02-28T14:27:47,215 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2024-02-28T14:27:47,216 creating build/lib/multiqc/modules/cellranger 2024-02-28T14:27:47,216 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2024-02-28T14:27:47,217 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2024-02-28T14:27:47,217 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2024-02-28T14:27:47,218 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2024-02-28T14:27:47,218 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2024-02-28T14:27:47,218 creating build/lib/multiqc/modules/checkqc 2024-02-28T14:27:47,219 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2024-02-28T14:27:47,219 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2024-02-28T14:27:47,220 creating build/lib/multiqc/modules/clipandmerge 2024-02-28T14:27:47,220 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2024-02-28T14:27:47,220 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2024-02-28T14:27:47,221 creating build/lib/multiqc/modules/clusterflow 2024-02-28T14:27:47,221 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2024-02-28T14:27:47,222 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2024-02-28T14:27:47,222 creating build/lib/multiqc/modules/conpair 2024-02-28T14:27:47,223 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2024-02-28T14:27:47,223 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2024-02-28T14:27:47,224 creating build/lib/multiqc/modules/custom_content 2024-02-28T14:27:47,224 copying multiqc/modules/custom_content/__init__.py -> build/lib/multiqc/modules/custom_content 2024-02-28T14:27:47,225 copying multiqc/modules/custom_content/custom_content.py -> build/lib/multiqc/modules/custom_content 2024-02-28T14:27:47,225 creating build/lib/multiqc/modules/cutadapt 2024-02-28T14:27:47,226 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2024-02-28T14:27:47,226 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2024-02-28T14:27:47,227 creating build/lib/multiqc/modules/damageprofiler 2024-02-28T14:27:47,227 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2024-02-28T14:27:47,228 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2024-02-28T14:27:47,228 creating build/lib/multiqc/modules/dedup 2024-02-28T14:27:47,229 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2024-02-28T14:27:47,229 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2024-02-28T14:27:47,230 creating build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,230 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,231 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,231 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,232 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,232 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,233 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,234 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,234 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,235 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,235 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,236 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2024-02-28T14:27:47,236 creating build/lib/multiqc/modules/diamond 2024-02-28T14:27:47,236 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2024-02-28T14:27:47,237 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2024-02-28T14:27:47,237 creating build/lib/multiqc/modules/disambiguate 2024-02-28T14:27:47,238 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2024-02-28T14:27:47,238 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2024-02-28T14:27:47,239 creating build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,239 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,240 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,240 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,240 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,241 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,241 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,242 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,242 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,243 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,243 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,244 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,244 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,245 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,245 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,246 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,246 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,247 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,247 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2024-02-28T14:27:47,248 creating build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,248 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,249 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,249 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,250 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,250 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,251 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,251 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2024-02-28T14:27:47,252 creating build/lib/multiqc/modules/dragen_fastqc/assets 2024-02-28T14:27:47,253 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-02-28T14:27:47,253 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2024-02-28T14:27:47,253 creating build/lib/multiqc/modules/eigenstratdatabasetools 2024-02-28T14:27:47,254 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-02-28T14:27:47,254 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2024-02-28T14:27:47,255 creating build/lib/multiqc/modules/fastp 2024-02-28T14:27:47,255 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2024-02-28T14:27:47,256 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2024-02-28T14:27:47,256 creating build/lib/multiqc/modules/fastq_screen 2024-02-28T14:27:47,257 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2024-02-28T14:27:47,259 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2024-02-28T14:27:47,261 creating build/lib/multiqc/modules/fastqc 2024-02-28T14:27:47,262 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2024-02-28T14:27:47,264 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2024-02-28T14:27:47,267 creating build/lib/multiqc/modules/fastqc/assets 2024-02-28T14:27:47,268 creating build/lib/multiqc/modules/fastqc/assets/css 2024-02-28T14:27:47,269 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2024-02-28T14:27:47,271 creating build/lib/multiqc/modules/fastqc/assets/js 2024-02-28T14:27:47,272 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2024-02-28T14:27:47,275 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:47,275 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:47,278 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:47,279 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:47,281 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:47,283 creating build/lib/multiqc/modules/featureCounts 2024-02-28T14:27:47,284 copying multiqc/modules/featureCounts/__init__.py -> build/lib/multiqc/modules/featureCounts 2024-02-28T14:27:47,286 copying multiqc/modules/featureCounts/feature_counts.py -> build/lib/multiqc/modules/featureCounts 2024-02-28T14:27:47,288 creating build/lib/multiqc/modules/fgbio 2024-02-28T14:27:47,289 copying multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/lib/multiqc/modules/fgbio 2024-02-28T14:27:47,292 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2024-02-28T14:27:47,294 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2024-02-28T14:27:47,296 copying multiqc/modules/fgbio/groupreadsbyumi.py -> build/lib/multiqc/modules/fgbio 2024-02-28T14:27:47,298 creating build/lib/multiqc/modules/filtlong 2024-02-28T14:27:47,299 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2024-02-28T14:27:47,301 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2024-02-28T14:27:47,303 creating build/lib/multiqc/modules/flash 2024-02-28T14:27:47,304 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2024-02-28T14:27:47,306 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2024-02-28T14:27:47,308 creating build/lib/multiqc/modules/flexbar 2024-02-28T14:27:47,309 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2024-02-28T14:27:47,311 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2024-02-28T14:27:47,313 creating build/lib/multiqc/modules/freyja 2024-02-28T14:27:47,314 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2024-02-28T14:27:47,316 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2024-02-28T14:27:47,318 creating build/lib/multiqc/modules/gatk 2024-02-28T14:27:47,319 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2024-02-28T14:27:47,321 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2024-02-28T14:27:47,324 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2024-02-28T14:27:47,326 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2024-02-28T14:27:47,328 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2024-02-28T14:27:47,331 creating build/lib/multiqc/modules/gffcompare 2024-02-28T14:27:47,331 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2024-02-28T14:27:47,333 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2024-02-28T14:27:47,336 creating build/lib/multiqc/modules/goleft_indexcov 2024-02-28T14:27:47,337 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2024-02-28T14:27:47,339 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2024-02-28T14:27:47,341 creating build/lib/multiqc/modules/gopeaks 2024-02-28T14:27:47,342 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2024-02-28T14:27:47,345 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2024-02-28T14:27:47,347 creating build/lib/multiqc/modules/happy 2024-02-28T14:27:47,347 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2024-02-28T14:27:47,349 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2024-02-28T14:27:47,352 creating build/lib/multiqc/modules/hicexplorer 2024-02-28T14:27:47,353 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2024-02-28T14:27:47,355 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2024-02-28T14:27:47,358 creating build/lib/multiqc/modules/hicpro 2024-02-28T14:27:47,359 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2024-02-28T14:27:47,365 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2024-02-28T14:27:47,368 creating build/lib/multiqc/modules/hicup 2024-02-28T14:27:47,369 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2024-02-28T14:27:47,371 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2024-02-28T14:27:47,373 creating build/lib/multiqc/modules/hifiasm 2024-02-28T14:27:47,374 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2024-02-28T14:27:47,376 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2024-02-28T14:27:47,379 creating build/lib/multiqc/modules/hisat2 2024-02-28T14:27:47,379 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2024-02-28T14:27:47,381 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2024-02-28T14:27:47,384 creating build/lib/multiqc/modules/homer 2024-02-28T14:27:47,385 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2024-02-28T14:27:47,387 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2024-02-28T14:27:47,389 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2024-02-28T14:27:47,391 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2024-02-28T14:27:47,393 creating build/lib/multiqc/modules/hops 2024-02-28T14:27:47,394 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2024-02-28T14:27:47,396 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2024-02-28T14:27:47,398 creating build/lib/multiqc/modules/htseq 2024-02-28T14:27:47,399 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2024-02-28T14:27:47,401 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2024-02-28T14:27:47,404 creating build/lib/multiqc/modules/humid 2024-02-28T14:27:47,405 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2024-02-28T14:27:47,407 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2024-02-28T14:27:47,409 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2024-02-28T14:27:47,411 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2024-02-28T14:27:47,412 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2024-02-28T14:27:47,414 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2024-02-28T14:27:47,416 creating build/lib/multiqc/modules/interop 2024-02-28T14:27:47,417 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2024-02-28T14:27:47,419 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2024-02-28T14:27:47,422 creating build/lib/multiqc/modules/isoseq 2024-02-28T14:27:47,423 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2024-02-28T14:27:47,425 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2024-02-28T14:27:47,428 creating build/lib/multiqc/modules/ivar 2024-02-28T14:27:47,429 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2024-02-28T14:27:47,431 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2024-02-28T14:27:47,434 creating build/lib/multiqc/modules/jcvi 2024-02-28T14:27:47,435 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2024-02-28T14:27:47,437 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2024-02-28T14:27:47,440 creating build/lib/multiqc/modules/jellyfish 2024-02-28T14:27:47,441 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2024-02-28T14:27:47,442 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2024-02-28T14:27:47,445 creating build/lib/multiqc/modules/kaiju 2024-02-28T14:27:47,446 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2024-02-28T14:27:47,448 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2024-02-28T14:27:47,450 creating build/lib/multiqc/modules/kallisto 2024-02-28T14:27:47,451 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2024-02-28T14:27:47,453 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2024-02-28T14:27:47,456 creating build/lib/multiqc/modules/kat 2024-02-28T14:27:47,457 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2024-02-28T14:27:47,459 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2024-02-28T14:27:47,461 creating build/lib/multiqc/modules/kraken 2024-02-28T14:27:47,462 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2024-02-28T14:27:47,464 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2024-02-28T14:27:47,467 creating build/lib/multiqc/modules/leehom 2024-02-28T14:27:47,468 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2024-02-28T14:27:47,470 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2024-02-28T14:27:47,472 creating build/lib/multiqc/modules/librarian 2024-02-28T14:27:47,472 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2024-02-28T14:27:47,474 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2024-02-28T14:27:47,477 creating build/lib/multiqc/modules/lima 2024-02-28T14:27:47,477 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2024-02-28T14:27:47,479 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2024-02-28T14:27:47,482 creating build/lib/multiqc/modules/longranger 2024-02-28T14:27:47,482 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2024-02-28T14:27:47,484 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2024-02-28T14:27:47,487 creating build/lib/multiqc/modules/macs2 2024-02-28T14:27:47,488 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2024-02-28T14:27:47,490 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2024-02-28T14:27:47,492 creating build/lib/multiqc/modules/malt 2024-02-28T14:27:47,493 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2024-02-28T14:27:47,495 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2024-02-28T14:27:47,497 creating build/lib/multiqc/modules/mapdamage 2024-02-28T14:27:47,498 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2024-02-28T14:27:47,500 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2024-02-28T14:27:47,503 creating build/lib/multiqc/modules/megahit 2024-02-28T14:27:47,504 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2024-02-28T14:27:47,506 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2024-02-28T14:27:47,508 creating build/lib/multiqc/modules/metaphlan 2024-02-28T14:27:47,509 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2024-02-28T14:27:47,511 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2024-02-28T14:27:47,514 creating build/lib/multiqc/modules/methylqa 2024-02-28T14:27:47,515 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2024-02-28T14:27:47,517 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2024-02-28T14:27:47,519 creating build/lib/multiqc/modules/minionqc 2024-02-28T14:27:47,520 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2024-02-28T14:27:47,522 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2024-02-28T14:27:47,524 creating build/lib/multiqc/modules/mirtop 2024-02-28T14:27:47,525 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2024-02-28T14:27:47,527 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2024-02-28T14:27:47,530 creating build/lib/multiqc/modules/mirtrace 2024-02-28T14:27:47,531 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2024-02-28T14:27:47,533 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2024-02-28T14:27:47,535 creating build/lib/multiqc/modules/mosdepth 2024-02-28T14:27:47,536 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2024-02-28T14:27:47,538 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2024-02-28T14:27:47,541 creating build/lib/multiqc/modules/motus 2024-02-28T14:27:47,542 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2024-02-28T14:27:47,544 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2024-02-28T14:27:47,546 creating build/lib/multiqc/modules/mtnucratio 2024-02-28T14:27:47,547 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2024-02-28T14:27:47,549 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2024-02-28T14:27:47,551 creating build/lib/multiqc/modules/multivcfanalyzer 2024-02-28T14:27:47,552 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-02-28T14:27:47,554 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2024-02-28T14:27:47,556 creating build/lib/multiqc/modules/nanostat 2024-02-28T14:27:47,557 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2024-02-28T14:27:47,559 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2024-02-28T14:27:47,561 creating build/lib/multiqc/modules/nextclade 2024-02-28T14:27:47,562 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2024-02-28T14:27:47,564 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2024-02-28T14:27:47,566 creating build/lib/multiqc/modules/ngsderive 2024-02-28T14:27:47,567 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2024-02-28T14:27:47,569 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2024-02-28T14:27:47,572 creating build/lib/multiqc/modules/nonpareil 2024-02-28T14:27:47,572 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2024-02-28T14:27:47,574 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2024-02-28T14:27:47,577 creating build/lib/multiqc/modules/odgi 2024-02-28T14:27:47,578 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2024-02-28T14:27:47,580 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2024-02-28T14:27:47,582 creating build/lib/multiqc/modules/optitype 2024-02-28T14:27:47,583 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2024-02-28T14:27:47,585 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2024-02-28T14:27:47,588 creating build/lib/multiqc/modules/pangolin 2024-02-28T14:27:47,588 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2024-02-28T14:27:47,590 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2024-02-28T14:27:47,593 creating build/lib/multiqc/modules/pbmarkdup 2024-02-28T14:27:47,593 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2024-02-28T14:27:47,596 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2024-02-28T14:27:47,598 creating build/lib/multiqc/modules/peddy 2024-02-28T14:27:47,599 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2024-02-28T14:27:47,601 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2024-02-28T14:27:47,604 creating build/lib/multiqc/modules/phantompeakqualtools 2024-02-28T14:27:47,605 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-02-28T14:27:47,607 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2024-02-28T14:27:47,609 creating build/lib/multiqc/modules/picard 2024-02-28T14:27:47,610 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,612 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,614 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,617 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,620 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,622 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,624 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,627 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,629 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,631 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,634 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,635 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,637 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,639 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,641 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,643 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,646 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,648 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,650 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,653 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,656 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,658 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,660 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,662 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2024-02-28T14:27:47,664 creating build/lib/multiqc/modules/porechop 2024-02-28T14:27:47,665 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2024-02-28T14:27:47,667 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2024-02-28T14:27:47,669 creating build/lib/multiqc/modules/preseq 2024-02-28T14:27:47,670 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2024-02-28T14:27:47,672 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2024-02-28T14:27:47,675 creating build/lib/multiqc/modules/prinseqplusplus 2024-02-28T14:27:47,676 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2024-02-28T14:27:47,678 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2024-02-28T14:27:47,680 creating build/lib/multiqc/modules/prokka 2024-02-28T14:27:47,681 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2024-02-28T14:27:47,683 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2024-02-28T14:27:47,685 creating build/lib/multiqc/modules/purple 2024-02-28T14:27:47,686 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2024-02-28T14:27:47,688 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2024-02-28T14:27:47,691 creating build/lib/multiqc/modules/pychopper 2024-02-28T14:27:47,692 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2024-02-28T14:27:47,694 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2024-02-28T14:27:47,696 creating build/lib/multiqc/modules/pycoqc 2024-02-28T14:27:47,697 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2024-02-28T14:27:47,699 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2024-02-28T14:27:47,701 creating build/lib/multiqc/modules/qc3C 2024-02-28T14:27:47,702 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2024-02-28T14:27:47,704 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2024-02-28T14:27:47,707 creating build/lib/multiqc/modules/qorts 2024-02-28T14:27:47,708 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2024-02-28T14:27:47,709 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2024-02-28T14:27:47,712 creating build/lib/multiqc/modules/qualimap 2024-02-28T14:27:47,712 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2024-02-28T14:27:47,716 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2024-02-28T14:27:47,718 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2024-02-28T14:27:47,720 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2024-02-28T14:27:47,722 creating build/lib/multiqc/modules/quast 2024-02-28T14:27:47,723 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2024-02-28T14:27:47,725 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2024-02-28T14:27:47,727 creating build/lib/multiqc/modules/rna_seqc 2024-02-28T14:27:47,728 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2024-02-28T14:27:47,730 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2024-02-28T14:27:47,733 creating build/lib/multiqc/modules/rockhopper 2024-02-28T14:27:47,733 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2024-02-28T14:27:47,736 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2024-02-28T14:27:47,738 creating build/lib/multiqc/modules/rsem 2024-02-28T14:27:47,739 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2024-02-28T14:27:47,741 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2024-02-28T14:27:47,743 creating build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,744 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,746 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,748 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,751 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,753 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,755 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,757 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,760 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,762 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,764 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,766 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,768 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2024-02-28T14:27:47,770 creating build/lib/multiqc/modules/rseqc/assets 2024-02-28T14:27:47,771 creating build/lib/multiqc/modules/rseqc/assets/js 2024-02-28T14:27:47,772 copying multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/lib/multiqc/modules/rseqc/assets/js 2024-02-28T14:27:47,774 creating build/lib/multiqc/modules/salmon 2024-02-28T14:27:47,775 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2024-02-28T14:27:47,777 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2024-02-28T14:27:47,780 creating build/lib/multiqc/modules/sambamba 2024-02-28T14:27:47,780 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2024-02-28T14:27:47,782 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2024-02-28T14:27:47,785 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2024-02-28T14:27:47,786 creating build/lib/multiqc/modules/samblaster 2024-02-28T14:27:47,787 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2024-02-28T14:27:47,789 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2024-02-28T14:27:47,791 creating build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,792 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,794 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,796 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,799 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,801 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,803 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,805 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2024-02-28T14:27:47,807 creating build/lib/multiqc/modules/sargasso 2024-02-28T14:27:47,808 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2024-02-28T14:27:47,810 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2024-02-28T14:27:47,813 creating build/lib/multiqc/modules/seqera_cli 2024-02-28T14:27:47,813 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2024-02-28T14:27:47,815 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2024-02-28T14:27:47,818 creating build/lib/multiqc/modules/seqwho 2024-02-28T14:27:47,819 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2024-02-28T14:27:47,821 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2024-02-28T14:27:47,823 creating build/lib/multiqc/modules/seqyclean 2024-02-28T14:27:47,824 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2024-02-28T14:27:47,826 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2024-02-28T14:27:47,828 creating build/lib/multiqc/modules/sexdeterrmine 2024-02-28T14:27:47,829 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2024-02-28T14:27:47,831 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2024-02-28T14:27:47,833 creating build/lib/multiqc/modules/sickle 2024-02-28T14:27:47,834 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2024-02-28T14:27:47,836 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2024-02-28T14:27:47,839 creating build/lib/multiqc/modules/skewer 2024-02-28T14:27:47,840 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2024-02-28T14:27:47,842 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2024-02-28T14:27:47,844 creating build/lib/multiqc/modules/slamdunk 2024-02-28T14:27:47,845 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2024-02-28T14:27:47,847 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2024-02-28T14:27:47,850 creating build/lib/multiqc/modules/snippy 2024-02-28T14:27:47,851 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2024-02-28T14:27:47,853 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2024-02-28T14:27:47,855 creating build/lib/multiqc/modules/snpeff 2024-02-28T14:27:47,856 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2024-02-28T14:27:47,858 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2024-02-28T14:27:47,860 creating build/lib/multiqc/modules/snpsplit 2024-02-28T14:27:47,861 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2024-02-28T14:27:47,862 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2024-02-28T14:27:47,865 creating build/lib/multiqc/modules/somalier 2024-02-28T14:27:47,866 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2024-02-28T14:27:47,868 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2024-02-28T14:27:47,870 creating build/lib/multiqc/modules/sortmerna 2024-02-28T14:27:47,871 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2024-02-28T14:27:47,873 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2024-02-28T14:27:47,875 creating build/lib/multiqc/modules/sourmash 2024-02-28T14:27:47,876 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2024-02-28T14:27:47,878 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2024-02-28T14:27:47,880 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2024-02-28T14:27:47,882 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2024-02-28T14:27:47,884 creating build/lib/multiqc/modules/spaceranger 2024-02-28T14:27:47,885 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2024-02-28T14:27:47,887 copying multiqc/modules/spaceranger/_utils.py -> build/lib/multiqc/modules/spaceranger 2024-02-28T14:27:47,889 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2024-02-28T14:27:47,891 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2024-02-28T14:27:47,893 creating build/lib/multiqc/modules/stacks 2024-02-28T14:27:47,894 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2024-02-28T14:27:47,896 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2024-02-28T14:27:47,898 creating build/lib/multiqc/modules/star 2024-02-28T14:27:47,899 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2024-02-28T14:27:47,901 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2024-02-28T14:27:47,904 creating build/lib/multiqc/modules/supernova 2024-02-28T14:27:47,905 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2024-02-28T14:27:47,907 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2024-02-28T14:27:47,910 creating build/lib/multiqc/modules/theta2 2024-02-28T14:27:47,911 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2024-02-28T14:27:47,913 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2024-02-28T14:27:47,915 creating build/lib/multiqc/modules/tophat 2024-02-28T14:27:47,916 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2024-02-28T14:27:47,918 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2024-02-28T14:27:47,920 creating build/lib/multiqc/modules/trimmomatic 2024-02-28T14:27:47,921 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2024-02-28T14:27:47,923 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2024-02-28T14:27:47,925 creating build/lib/multiqc/modules/truvari 2024-02-28T14:27:47,926 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2024-02-28T14:27:47,928 copying multiqc/modules/truvari/bench.py -> build/lib/multiqc/modules/truvari 2024-02-28T14:27:47,931 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2024-02-28T14:27:47,933 creating build/lib/multiqc/modules/umitools 2024-02-28T14:27:47,934 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2024-02-28T14:27:47,937 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2024-02-28T14:27:47,939 creating build/lib/multiqc/modules/varscan2 2024-02-28T14:27:47,940 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2024-02-28T14:27:47,941 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2024-02-28T14:27:47,944 creating build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,945 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,946 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,948 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,950 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,952 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,954 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2024-02-28T14:27:47,956 creating build/lib/multiqc/modules/vep 2024-02-28T14:27:47,957 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2024-02-28T14:27:47,959 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2024-02-28T14:27:47,962 creating build/lib/multiqc/modules/verifybamid 2024-02-28T14:27:47,962 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2024-02-28T14:27:47,965 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2024-02-28T14:27:47,967 creating build/lib/multiqc/modules/whatshap 2024-02-28T14:27:47,968 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2024-02-28T14:27:47,970 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2024-02-28T14:27:47,973 creating build/lib/multiqc/modules/xengsort 2024-02-28T14:27:47,974 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2024-02-28T14:27:47,976 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2024-02-28T14:27:47,978 creating build/lib/multiqc/modules/xenome 2024-02-28T14:27:47,979 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2024-02-28T14:27:47,981 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2024-02-28T14:27:47,984 creating build/lib/multiqc/plots 2024-02-28T14:27:47,984 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,986 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,989 copying multiqc/plots/beeswarm.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,990 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,993 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,994 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,997 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2024-02-28T14:27:47,999 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2024-02-28T14:27:48,001 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2024-02-28T14:27:48,004 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2024-02-28T14:27:48,005 creating build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,006 copying multiqc/plots/plotly/__init__.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,008 copying multiqc/plots/plotly/bar.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,011 copying multiqc/plots/plotly/box.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,013 copying multiqc/plots/plotly/heatmap.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,016 copying multiqc/plots/plotly/line.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,018 copying multiqc/plots/plotly/plot.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,021 copying multiqc/plots/plotly/scatter.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,023 copying multiqc/plots/plotly/table.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,025 copying multiqc/plots/plotly/violin.py -> build/lib/multiqc/plots/plotly 2024-02-28T14:27:48,028 creating build/lib/multiqc/templates 2024-02-28T14:27:48,029 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2024-02-28T14:27:48,030 creating build/lib/multiqc/templates/default 2024-02-28T14:27:48,031 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,033 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,035 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,037 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,039 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,041 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,043 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,045 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,047 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,049 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,051 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2024-02-28T14:27:48,054 creating build/lib/multiqc/templates/default/assets 2024-02-28T14:27:48,054 creating build/lib/multiqc/templates/default/assets/css 2024-02-28T14:27:48,055 copying multiqc/templates/default/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/default/assets/css 2024-02-28T14:27:48,059 copying multiqc/templates/default/assets/css/default_multiqc.css -> build/lib/multiqc/templates/default/assets/css 2024-02-28T14:27:48,062 copying multiqc/templates/default/assets/css/jquery.toast.css -> build/lib/multiqc/templates/default/assets/css 2024-02-28T14:27:48,064 creating build/lib/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,065 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,068 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,072 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,075 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,078 copying multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,081 creating build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,082 copying multiqc/templates/default/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,085 copying multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,087 copying multiqc/templates/default/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,089 copying multiqc/templates/default/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,091 copying multiqc/templates/default/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,093 copying multiqc/templates/default/assets/img/seqera_logo.png -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,096 copying multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/default/assets/img 2024-02-28T14:27:48,097 creating build/lib/multiqc/templates/default/assets/js 2024-02-28T14:27:48,098 copying multiqc/templates/default/assets/js/flat.js -> build/lib/multiqc/templates/default/assets/js 2024-02-28T14:27:48,100 copying multiqc/templates/default/assets/js/multiqc.js -> build/lib/multiqc/templates/default/assets/js 2024-02-28T14:27:48,102 copying multiqc/templates/default/assets/js/plotting.js -> build/lib/multiqc/templates/default/assets/js 2024-02-28T14:27:48,104 copying multiqc/templates/default/assets/js/tables.js -> build/lib/multiqc/templates/default/assets/js 2024-02-28T14:27:48,107 copying multiqc/templates/default/assets/js/toolbox.js -> build/lib/multiqc/templates/default/assets/js 2024-02-28T14:27:48,110 creating build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,111 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,113 copying multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,116 copying multiqc/templates/default/assets/js/packages/clipboard.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,119 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,122 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,125 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,128 copying multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,130 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,134 copying multiqc/templates/default/assets/js/packages/lz-string.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,137 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,259 copying multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,327 creating build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,328 copying multiqc/templates/default/assets/js/plots/bar.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,331 copying multiqc/templates/default/assets/js/plots/box.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,333 copying multiqc/templates/default/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,336 copying multiqc/templates/default/assets/js/plots/line.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,338 copying multiqc/templates/default/assets/js/plots/scatter.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,341 copying multiqc/templates/default/assets/js/plots/violin.js -> build/lib/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,344 creating build/lib/multiqc/templates/gathered 2024-02-28T14:27:48,345 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2024-02-28T14:27:48,348 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2024-02-28T14:27:48,350 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2024-02-28T14:27:48,356 creating build/lib/multiqc/templates/geo 2024-02-28T14:27:48,357 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2024-02-28T14:27:48,360 copying multiqc/templates/geo/includes.html -> build/lib/multiqc/templates/geo 2024-02-28T14:27:48,362 creating build/lib/multiqc/templates/geo/assets 2024-02-28T14:27:48,363 creating build/lib/multiqc/templates/geo/assets/css 2024-02-28T14:27:48,364 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2024-02-28T14:27:48,370 creating build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,371 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,373 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,377 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,381 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,384 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,387 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,392 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,395 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,398 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,401 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,403 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,406 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2024-02-28T14:27:48,409 creating build/lib/multiqc/templates/highcharts 2024-02-28T14:27:48,410 copying multiqc/templates/highcharts/__init__.py -> build/lib/multiqc/templates/highcharts 2024-02-28T14:27:48,412 copying multiqc/templates/highcharts/includes.html -> build/lib/multiqc/templates/highcharts 2024-02-28T14:27:48,415 creating build/lib/multiqc/templates/highcharts/assets 2024-02-28T14:27:48,416 creating build/lib/multiqc/templates/highcharts/assets/css 2024-02-28T14:27:48,417 copying multiqc/templates/highcharts/assets/css/default_multiqc.css -> build/lib/multiqc/templates/highcharts/assets/css 2024-02-28T14:27:48,420 creating build/lib/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,421 copying multiqc/templates/highcharts/assets/js/multiqc_mpl.js -> build/lib/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,423 copying multiqc/templates/highcharts/assets/js/multiqc_plotting.js -> build/lib/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,426 copying multiqc/templates/highcharts/assets/js/multiqc_tables.js -> build/lib/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,429 copying multiqc/templates/highcharts/assets/js/multiqc_toolbox.js -> build/lib/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,432 creating build/lib/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,433 copying multiqc/templates/highcharts/assets/js/packages/highcharts.export-csv.js -> build/lib/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,435 copying multiqc/templates/highcharts/assets/js/packages/highcharts.exporting.js -> build/lib/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,438 copying multiqc/templates/highcharts/assets/js/packages/highcharts.heatmap.js -> build/lib/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,440 copying multiqc/templates/highcharts/assets/js/packages/highcharts.js -> build/lib/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,445 copying multiqc/templates/highcharts/assets/js/packages/highcharts.offline-exporting.js -> build/lib/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,447 creating build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,448 copying multiqc/templates/highcharts/plots/__init__.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,450 copying multiqc/templates/highcharts/plots/bargraph.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,452 copying multiqc/templates/highcharts/plots/beeswarm.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,454 copying multiqc/templates/highcharts/plots/boxplot.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,456 copying multiqc/templates/highcharts/plots/heatmap.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,458 copying multiqc/templates/highcharts/plots/linegraph.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,461 copying multiqc/templates/highcharts/plots/scatter.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,463 copying multiqc/templates/highcharts/plots/table.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,466 copying multiqc/templates/highcharts/plots/table_object.py -> build/lib/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,468 creating build/lib/multiqc/templates/sections 2024-02-28T14:27:48,469 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2024-02-28T14:27:48,471 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2024-02-28T14:27:48,473 creating build/lib/multiqc/templates/simple 2024-02-28T14:27:48,474 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2024-02-28T14:27:48,476 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2024-02-28T14:27:48,478 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2024-02-28T14:27:48,480 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2024-02-28T14:27:48,482 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2024-02-28T14:27:48,484 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2024-02-28T14:27:48,486 creating build/lib/multiqc/utils 2024-02-28T14:27:48,487 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,489 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,492 copying multiqc/utils/config_defaults.yaml -> build/lib/multiqc/utils 2024-02-28T14:27:48,494 copying multiqc/utils/log.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,496 copying multiqc/utils/lzstring.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,499 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,501 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,504 copying multiqc/utils/plugin_hooks.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,506 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,508 copying multiqc/utils/search_patterns.yaml -> build/lib/multiqc/utils 2024-02-28T14:27:48,511 copying multiqc/utils/software_versions.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,514 copying multiqc/utils/strict_helpers.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,516 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2024-02-28T14:27:48,526 installing to build/bdist.linux-armv7l/wheel 2024-02-28T14:27:48,527 running install 2024-02-28T14:27:48,550 running install_lib 2024-02-28T14:27:48,554 creating build/bdist.linux-armv7l 2024-02-28T14:27:48,555 creating build/bdist.linux-armv7l/wheel 2024-02-28T14:27:48,556 creating build/bdist.linux-armv7l/wheel/multiqc 2024-02-28T14:27:48,557 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-02-28T14:27:48,560 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-02-28T14:27:48,562 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,563 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,565 copying build/lib/multiqc/utils/log.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,567 copying build/lib/multiqc/utils/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,569 copying build/lib/multiqc/utils/strict_helpers.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,571 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,573 copying build/lib/multiqc/utils/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,575 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,577 copying build/lib/multiqc/utils/lzstring.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,579 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,582 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,583 copying build/lib/multiqc/utils/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,585 copying build/lib/multiqc/utils/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,588 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/multiqc/utils 2024-02-28T14:27:48,591 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,591 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,594 creating build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,595 copying build/lib/multiqc/plots/plotly/table.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,597 copying build/lib/multiqc/plots/plotly/bar.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,599 copying build/lib/multiqc/plots/plotly/line.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,602 copying build/lib/multiqc/plots/plotly/plot.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,604 copying build/lib/multiqc/plots/plotly/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,607 copying build/lib/multiqc/plots/plotly/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,609 copying build/lib/multiqc/plots/plotly/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,611 copying build/lib/multiqc/plots/plotly/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,613 copying build/lib/multiqc/plots/plotly/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots/plotly 2024-02-28T14:27:48,615 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,617 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,619 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,621 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,623 copying build/lib/multiqc/plots/beeswarm.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,624 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,626 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,628 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,629 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/multiqc/plots 2024-02-28T14:27:48,632 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2024-02-28T14:27:48,634 creating build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts 2024-02-28T14:27:48,635 creating build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets 2024-02-28T14:27:48,636 creating build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/css 2024-02-28T14:27:48,637 copying build/lib/multiqc/templates/highcharts/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/css 2024-02-28T14:27:48,640 creating build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,641 copying build/lib/multiqc/templates/highcharts/assets/js/multiqc_tables.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,643 copying build/lib/multiqc/templates/highcharts/assets/js/multiqc_toolbox.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,647 creating build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,648 copying build/lib/multiqc/templates/highcharts/assets/js/packages/highcharts.export-csv.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,650 copying build/lib/multiqc/templates/highcharts/assets/js/packages/highcharts.offline-exporting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,652 copying build/lib/multiqc/templates/highcharts/assets/js/packages/highcharts.exporting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,655 copying build/lib/multiqc/templates/highcharts/assets/js/packages/highcharts.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,660 copying build/lib/multiqc/templates/highcharts/assets/js/packages/highcharts.heatmap.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js/packages 2024-02-28T14:27:48,662 copying build/lib/multiqc/templates/highcharts/assets/js/multiqc_plotting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,665 copying build/lib/multiqc/templates/highcharts/assets/js/multiqc_mpl.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/assets/js 2024-02-28T14:27:48,667 copying build/lib/multiqc/templates/highcharts/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts 2024-02-28T14:27:48,669 creating build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,670 copying build/lib/multiqc/templates/highcharts/plots/table.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,673 copying build/lib/multiqc/templates/highcharts/plots/boxplot.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,676 copying build/lib/multiqc/templates/highcharts/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,678 copying build/lib/multiqc/templates/highcharts/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,681 copying build/lib/multiqc/templates/highcharts/plots/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,682 copying build/lib/multiqc/templates/highcharts/plots/beeswarm.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,684 copying build/lib/multiqc/templates/highcharts/plots/scatter.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,686 copying build/lib/multiqc/templates/highcharts/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,687 copying build/lib/multiqc/templates/highcharts/plots/table_object.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts/plots 2024-02-28T14:27:48,689 copying build/lib/multiqc/templates/highcharts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/highcharts 2024-02-28T14:27:48,691 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-02-28T14:27:48,692 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-02-28T14:27:48,694 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-02-28T14:27:48,696 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2024-02-28T14:27:48,698 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,699 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2024-02-28T14:27:48,701 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,702 copying build/lib/multiqc/templates/default/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,703 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,706 copying build/lib/multiqc/templates/default/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,708 copying build/lib/multiqc/templates/default/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,710 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,712 copying build/lib/multiqc/templates/default/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,714 copying build/lib/multiqc/templates/default/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2024-02-28T14:27:48,716 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-02-28T14:27:48,717 copying build/lib/multiqc/templates/default/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-02-28T14:27:48,720 copying build/lib/multiqc/templates/default/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-02-28T14:27:48,722 copying build/lib/multiqc/templates/default/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/css 2024-02-28T14:27:48,726 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-02-28T14:27:48,727 copying build/lib/multiqc/templates/default/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-02-28T14:27:48,730 copying build/lib/multiqc/templates/default/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-02-28T14:27:48,733 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,734 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,858 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,860 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,862 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,865 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,917 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,921 copying build/lib/multiqc/templates/default/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,924 copying build/lib/multiqc/templates/default/assets/js/packages/lz-string.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,927 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,930 copying build/lib/multiqc/templates/default/assets/js/packages/clipboard.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,933 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2024-02-28T14:27:48,937 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,938 copying build/lib/multiqc/templates/default/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,940 copying build/lib/multiqc/templates/default/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,942 copying build/lib/multiqc/templates/default/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,944 copying build/lib/multiqc/templates/default/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,946 copying build/lib/multiqc/templates/default/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,949 copying build/lib/multiqc/templates/default/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/plots 2024-02-28T14:27:48,951 copying build/lib/multiqc/templates/default/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-02-28T14:27:48,954 copying build/lib/multiqc/templates/default/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-02-28T14:27:48,956 copying build/lib/multiqc/templates/default/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2024-02-28T14:27:48,959 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,960 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,963 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,968 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,971 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,974 copying build/lib/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/fonts 2024-02-28T14:27:48,977 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,979 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,981 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,984 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,986 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,988 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,990 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,992 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,995 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:48,997 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:49,000 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/default 2024-02-28T14:27:49,003 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-02-28T14:27:49,004 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-02-28T14:27:49,006 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2024-02-28T14:27:49,008 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates 2024-02-28T14:27:49,010 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-02-28T14:27:49,011 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2024-02-28T14:27:49,013 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,014 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,016 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,018 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,020 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,022 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,025 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,027 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,030 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,031 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,034 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,037 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,039 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2024-02-28T14:27:49,043 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-02-28T14:27:49,044 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2024-02-28T14:27:49,048 copying build/lib/multiqc/templates/geo/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-02-28T14:27:49,050 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2024-02-28T14:27:49,052 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,052 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,054 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,056 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,058 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,060 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,061 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2024-02-28T14:27:49,063 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc 2024-02-28T14:27:49,068 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2024-02-28T14:27:49,069 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-02-28T14:27:49,070 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-02-28T14:27:49,072 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2024-02-28T14:27:49,074 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-02-28T14:27:49,075 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-02-28T14:27:49,078 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2024-02-28T14:27:49,080 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-02-28T14:27:49,081 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-02-28T14:27:49,083 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2024-02-28T14:27:49,086 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterRemoval 2024-02-28T14:27:49,087 copying build/lib/multiqc/modules/adapterRemoval/adapterRemoval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterRemoval 2024-02-28T14:27:49,089 copying build/lib/multiqc/modules/adapterRemoval/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/adapterRemoval 2024-02-28T14:27:49,091 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-02-28T14:27:49,092 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-02-28T14:27:49,095 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2024-02-28T14:27:49,097 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-02-28T14:27:49,098 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-02-28T14:27:49,100 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2024-02-28T14:27:49,102 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-02-28T14:27:49,103 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-02-28T14:27:49,105 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2024-02-28T14:27:49,107 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-02-28T14:27:49,108 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-02-28T14:27:49,110 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2024-02-28T14:27:49,112 copying build/lib/multiqc/modules/software_versions.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-02-28T14:27:49,114 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-02-28T14:27:49,115 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-02-28T14:27:49,117 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2024-02-28T14:27:49,120 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-02-28T14:27:49,120 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-02-28T14:27:49,122 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2024-02-28T14:27:49,124 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-02-28T14:27:49,125 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-02-28T14:27:49,127 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2024-02-28T14:27:49,129 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-02-28T14:27:49,130 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-02-28T14:27:49,132 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2024-02-28T14:27:49,134 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-02-28T14:27:49,135 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-02-28T14:27:49,137 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2024-02-28T14:27:49,139 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-02-28T14:27:49,140 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-02-28T14:27:49,143 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-02-28T14:27:49,145 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-02-28T14:27:49,147 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2024-02-28T14:27:49,149 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-02-28T14:27:49,150 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-02-28T14:27:49,152 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2024-02-28T14:27:49,155 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-02-28T14:27:49,156 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-02-28T14:27:49,158 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2024-02-28T14:27:49,160 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-02-28T14:27:49,160 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-02-28T14:27:49,162 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2024-02-28T14:27:49,164 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-02-28T14:27:49,165 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-02-28T14:27:49,167 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2024-02-28T14:27:49,169 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-02-28T14:27:49,170 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-02-28T14:27:49,172 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-02-28T14:27:49,175 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-02-28T14:27:49,177 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-02-28T14:27:49,178 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2024-02-28T14:27:49,181 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-02-28T14:27:49,182 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-02-28T14:27:49,184 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2024-02-28T14:27:49,186 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-02-28T14:27:49,187 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-02-28T14:27:49,190 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/star 2024-02-28T14:27:49,192 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-02-28T14:27:49,193 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-02-28T14:27:49,196 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-02-28T14:27:49,197 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-02-28T14:27:49,200 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-02-28T14:27:49,202 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2024-02-28T14:27:49,204 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-02-28T14:27:49,205 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-02-28T14:27:49,207 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2024-02-28T14:27:49,209 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-02-28T14:27:49,210 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-02-28T14:27:49,212 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2024-02-28T14:27:49,214 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-02-28T14:27:49,215 copying build/lib/multiqc/modules/featureCounts/feature_counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-02-28T14:27:49,217 copying build/lib/multiqc/modules/featureCounts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/featureCounts 2024-02-28T14:27:49,219 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-02-28T14:27:49,220 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-02-28T14:27:49,222 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2024-02-28T14:27:49,224 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-02-28T14:27:49,225 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-02-28T14:27:49,227 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2024-02-28T14:27:49,229 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-02-28T14:27:49,230 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-02-28T14:27:49,233 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2024-02-28T14:27:49,235 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-02-28T14:27:49,236 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-02-28T14:27:49,238 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2024-02-28T14:27:49,240 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-02-28T14:27:49,241 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-02-28T14:27:49,243 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2024-02-28T14:27:49,245 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-02-28T14:27:49,246 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-02-28T14:27:49,249 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-02-28T14:27:49,251 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2024-02-28T14:27:49,253 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-02-28T14:27:49,254 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-02-28T14:27:49,256 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2024-02-28T14:27:49,258 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-02-28T14:27:49,259 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-02-28T14:27:49,261 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2024-02-28T14:27:49,264 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-02-28T14:27:49,265 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-02-28T14:27:49,267 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2024-02-28T14:27:49,269 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-02-28T14:27:49,270 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-02-28T14:27:49,272 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2024-02-28T14:27:49,275 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-02-28T14:27:49,276 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-02-28T14:27:49,277 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2024-02-28T14:27:49,280 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,280 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,283 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,285 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,286 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,288 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,290 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,293 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,295 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,297 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,299 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,301 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,303 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,305 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,307 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,309 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,311 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,314 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,317 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2024-02-28T14:27:49,320 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-02-28T14:27:49,321 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-02-28T14:27:49,323 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2024-02-28T14:27:49,325 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-02-28T14:27:49,326 copying build/lib/multiqc/modules/truvari/bench.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-02-28T14:27:49,329 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-02-28T14:27:49,331 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2024-02-28T14:27:49,333 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-02-28T14:27:49,334 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-02-28T14:27:49,337 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2024-02-28T14:27:49,339 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-02-28T14:27:49,340 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-02-28T14:27:49,342 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2024-02-28T14:27:49,346 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-02-28T14:27:49,347 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-02-28T14:27:49,350 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2024-02-28T14:27:49,352 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-02-28T14:27:49,353 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-02-28T14:27:49,356 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-02-28T14:27:49,358 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-02-28T14:27:49,360 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2024-02-28T14:27:49,363 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-02-28T14:27:49,364 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-02-28T14:27:49,366 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2024-02-28T14:27:49,369 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,370 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,373 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,376 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,379 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,381 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,383 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,385 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,388 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,389 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,392 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,394 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,396 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,398 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,400 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,402 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,404 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,407 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,409 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,411 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,413 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,415 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,417 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,419 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,421 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2024-02-28T14:27:49,425 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-02-28T14:27:49,425 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-02-28T14:27:49,427 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-02-28T14:27:49,430 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2024-02-28T14:27:49,432 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-02-28T14:27:49,433 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-02-28T14:27:49,434 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2024-02-28T14:27:49,437 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-02-28T14:27:49,438 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-02-28T14:27:49,440 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2024-02-28T14:27:49,442 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-02-28T14:27:49,443 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-02-28T14:27:49,446 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2024-02-28T14:27:49,449 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-02-28T14:27:49,449 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-02-28T14:27:49,452 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2024-02-28T14:27:49,454 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-02-28T14:27:49,456 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-02-28T14:27:49,458 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2024-02-28T14:27:49,461 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-02-28T14:27:49,461 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-02-28T14:27:49,464 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2024-02-28T14:27:49,466 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-02-28T14:27:49,466 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-02-28T14:27:49,469 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2024-02-28T14:27:49,471 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-02-28T14:27:49,472 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-02-28T14:27:49,475 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2024-02-28T14:27:49,477 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-02-28T14:27:49,478 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-02-28T14:27:49,480 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2024-02-28T14:27:49,482 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-02-28T14:27:49,483 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-02-28T14:27:49,485 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2024-02-28T14:27:49,487 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-02-28T14:27:49,488 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-02-28T14:27:49,491 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2024-02-28T14:27:49,493 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-02-28T14:27:49,494 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-02-28T14:27:49,496 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2024-02-28T14:27:49,498 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-02-28T14:27:49,499 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-02-28T14:27:49,502 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2024-02-28T14:27:49,504 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-02-28T14:27:49,505 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-02-28T14:27:49,507 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2024-02-28T14:27:49,509 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-02-28T14:27:49,510 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-02-28T14:27:49,512 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2024-02-28T14:27:49,515 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-02-28T14:27:49,516 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-02-28T14:27:49,519 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2024-02-28T14:27:49,521 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-02-28T14:27:49,521 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-02-28T14:27:49,524 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2024-02-28T14:27:49,526 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,527 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,529 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,532 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,534 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,536 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,538 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,540 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2024-02-28T14:27:49,542 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-02-28T14:27:49,543 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-02-28T14:27:49,545 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2024-02-28T14:27:49,548 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-02-28T14:27:49,549 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-02-28T14:27:49,551 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2024-02-28T14:27:49,553 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-02-28T14:27:49,554 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-02-28T14:27:49,557 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2024-02-28T14:27:49,559 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-02-28T14:27:49,560 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-02-28T14:27:49,562 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2024-02-28T14:27:49,564 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,565 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets 2024-02-28T14:27:49,567 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-02-28T14:27:49,568 copying build/lib/multiqc/modules/rseqc/assets/js/multiqc_rseqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc/assets/js 2024-02-28T14:27:49,570 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,572 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,574 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,576 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,578 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,580 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,582 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,585 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,586 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,588 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,590 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,592 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2024-02-28T14:27:49,594 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-02-28T14:27:49,595 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-02-28T14:27:49,597 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2024-02-28T14:27:49,599 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-02-28T14:27:49,600 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-02-28T14:27:49,602 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2024-02-28T14:27:49,604 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-02-28T14:27:49,605 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-02-28T14:27:49,608 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2024-02-28T14:27:49,610 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-02-28T14:27:49,611 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-02-28T14:27:49,612 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2024-02-28T14:27:49,615 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-02-28T14:27:49,616 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-02-28T14:27:49,618 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2024-02-28T14:27:49,621 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-02-28T14:27:49,622 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-02-28T14:27:49,624 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2024-02-28T14:27:49,626 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-02-28T14:27:49,627 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-02-28T14:27:49,630 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2024-02-28T14:27:49,632 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-02-28T14:27:49,633 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-02-28T14:27:49,634 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2024-02-28T14:27:49,637 copying build/lib/multiqc/modules/base_module.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-02-28T14:27:49,640 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-02-28T14:27:49,641 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-02-28T14:27:49,643 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2024-02-28T14:27:49,646 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-02-28T14:27:49,647 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-02-28T14:27:49,648 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2024-02-28T14:27:49,651 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-02-28T14:27:49,652 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-02-28T14:27:49,654 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2024-02-28T14:27:49,656 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-02-28T14:27:49,657 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-02-28T14:27:49,659 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2024-02-28T14:27:49,661 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-02-28T14:27:49,662 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-02-28T14:27:49,664 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2024-02-28T14:27:49,667 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-02-28T14:27:49,667 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-02-28T14:27:49,670 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2024-02-28T14:27:49,672 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-02-28T14:27:49,673 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-02-28T14:27:49,675 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2024-02-28T14:27:49,678 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-02-28T14:27:49,679 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-02-28T14:27:49,681 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-02-28T14:27:49,683 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2024-02-28T14:27:49,685 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-02-28T14:27:49,686 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-02-28T14:27:49,689 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2024-02-28T14:27:49,691 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-02-28T14:27:49,692 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-02-28T14:27:49,694 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2024-02-28T14:27:49,697 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-02-28T14:27:49,698 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2024-02-28T14:27:49,699 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-02-28T14:27:49,701 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2024-02-28T14:27:49,703 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-02-28T14:27:49,704 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2024-02-28T14:27:49,707 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:49,708 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:49,709 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:49,711 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:49,713 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2024-02-28T14:27:49,715 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-02-28T14:27:49,717 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2024-02-28T14:27:49,720 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-02-28T14:27:49,720 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-02-28T14:27:49,723 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2024-02-28T14:27:49,725 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-02-28T14:27:49,726 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-02-28T14:27:49,727 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2024-02-28T14:27:49,730 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-02-28T14:27:49,730 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-02-28T14:27:49,733 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2024-02-28T14:27:49,736 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-02-28T14:27:49,737 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-02-28T14:27:49,739 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2024-02-28T14:27:49,741 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-02-28T14:27:49,742 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-02-28T14:27:49,745 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2024-02-28T14:27:49,747 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-02-28T14:27:49,748 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-02-28T14:27:49,750 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2024-02-28T14:27:49,752 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-02-28T14:27:49,753 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-02-28T14:27:49,756 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2024-02-28T14:27:49,758 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-02-28T14:27:49,759 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-02-28T14:27:49,761 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2024-02-28T14:27:49,763 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-02-28T14:27:49,764 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-02-28T14:27:49,766 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2024-02-28T14:27:49,768 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-02-28T14:27:49,770 creating build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-02-28T14:27:49,771 copying build/lib/multiqc/modules/custom_content/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-02-28T14:27:49,772 copying build/lib/multiqc/modules/custom_content/custom_content.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/custom_content 2024-02-28T14:27:49,775 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-02-28T14:27:49,776 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-02-28T14:27:49,778 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2024-02-28T14:27:49,780 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-02-28T14:27:49,781 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-02-28T14:27:49,783 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2024-02-28T14:27:49,785 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-02-28T14:27:49,786 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-02-28T14:27:49,789 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2024-02-28T14:27:49,791 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-02-28T14:27:49,792 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-02-28T14:27:49,794 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2024-02-28T14:27:49,796 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-02-28T14:27:49,797 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-02-28T14:27:49,799 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2024-02-28T14:27:49,801 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-02-28T14:27:49,802 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-02-28T14:27:49,805 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2024-02-28T14:27:49,807 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-02-28T14:27:49,808 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-02-28T14:27:49,810 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2024-02-28T14:27:49,812 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-02-28T14:27:49,813 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-02-28T14:27:49,815 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2024-02-28T14:27:49,817 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-02-28T14:27:49,818 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-02-28T14:27:49,820 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2024-02-28T14:27:49,823 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-02-28T14:27:49,823 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-02-28T14:27:49,826 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2024-02-28T14:27:49,828 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-02-28T14:27:49,829 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-02-28T14:27:49,830 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2024-02-28T14:27:49,833 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-02-28T14:27:49,834 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-02-28T14:27:49,836 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2024-02-28T14:27:49,838 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,839 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,842 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2024-02-28T14:27:49,843 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-02-28T14:27:49,844 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2024-02-28T14:27:49,846 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,849 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,851 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,853 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,855 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,857 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2024-02-28T14:27:49,859 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-02-28T14:27:49,860 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-02-28T14:27:49,863 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2024-02-28T14:27:49,865 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-02-28T14:27:49,866 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-02-28T14:27:49,868 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2024-02-28T14:27:49,870 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,871 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,873 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,875 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,877 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,878 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,880 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2024-02-28T14:27:49,882 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-02-28T14:27:49,882 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-02-28T14:27:49,885 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2024-02-28T14:27:49,887 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-02-28T14:27:49,888 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-02-28T14:27:49,889 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2024-02-28T14:27:49,892 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-02-28T14:27:49,893 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-02-28T14:27:49,896 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2024-02-28T14:27:49,898 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-02-28T14:27:49,899 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-02-28T14:27:49,901 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2024-02-28T14:27:49,903 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-02-28T14:27:49,904 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-02-28T14:27:49,907 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-02-28T14:27:49,909 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-02-28T14:27:49,910 copying build/lib/multiqc/modules/spaceranger/_utils.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2024-02-28T14:27:49,912 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-02-28T14:27:49,913 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-02-28T14:27:49,915 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2024-02-28T14:27:49,918 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-02-28T14:27:49,919 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-02-28T14:27:49,922 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2024-02-28T14:27:49,924 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-02-28T14:27:49,925 copying build/lib/multiqc/modules/bracken/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-02-28T14:27:49,927 copying build/lib/multiqc/modules/bracken/bracken.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bracken 2024-02-28T14:27:49,929 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-02-28T14:27:49,930 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-02-28T14:27:49,932 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2024-02-28T14:27:49,933 copying build/lib/multiqc/modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/multiqc/modules 2024-02-28T14:27:49,936 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-02-28T14:27:49,937 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-02-28T14:27:49,938 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2024-02-28T14:27:49,940 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-02-28T14:27:49,941 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-02-28T14:27:49,943 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2024-02-28T14:27:49,945 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-02-28T14:27:49,946 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-02-28T14:27:49,949 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2024-02-28T14:27:49,951 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,951 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,953 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,956 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,958 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,959 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,961 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,963 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,965 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,966 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,968 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,970 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,972 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,974 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,976 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,978 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2024-02-28T14:27:49,980 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-02-28T14:27:49,981 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-02-28T14:27:49,983 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2024-02-28T14:27:49,985 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-02-28T14:27:49,986 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-02-28T14:27:49,988 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2024-02-28T14:27:49,990 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-02-28T14:27:49,991 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-02-28T14:27:49,993 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2024-02-28T14:27:49,995 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-02-28T14:27:49,996 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-02-28T14:27:49,997 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2024-02-28T14:27:50,000 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-02-28T14:27:50,001 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-02-28T14:27:50,003 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2024-02-28T14:27:50,006 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-02-28T14:27:50,006 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-02-28T14:27:50,009 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2024-02-28T14:27:50,011 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-02-28T14:27:50,012 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-02-28T14:27:50,014 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2024-02-28T14:27:50,016 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-02-28T14:27:50,017 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-02-28T14:27:50,019 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2024-02-28T14:27:50,022 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,023 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,025 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,027 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,030 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,032 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,034 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,036 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,038 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,039 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,042 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,043 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2024-02-28T14:27:50,046 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-02-28T14:27:50,046 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-02-28T14:27:50,049 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2024-02-28T14:27:50,051 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-02-28T14:27:50,052 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-02-28T14:27:50,055 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2024-02-28T14:27:50,057 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-02-28T14:27:50,057 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-02-28T14:27:50,059 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2024-02-28T14:27:50,061 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-02-28T14:27:50,062 copying build/lib/multiqc/modules/fgbio/groupreadsbyumi.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-02-28T14:27:50,064 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-02-28T14:27:50,066 copying build/lib/multiqc/modules/fgbio/ErrorRateByReadPosition.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-02-28T14:27:50,068 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2024-02-28T14:27:50,070 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-02-28T14:27:50,071 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-02-28T14:27:50,073 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-02-28T14:27:50,075 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-02-28T14:27:50,078 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2024-02-28T14:27:50,080 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-02-28T14:27:50,081 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-02-28T14:27:50,083 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2024-02-28T14:27:50,086 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,087 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,089 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,090 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,092 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,094 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,096 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2024-02-28T14:27:50,098 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-02-28T14:27:50,099 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-02-28T14:27:50,102 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2024-02-28T14:27:50,104 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-02-28T14:27:50,105 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-02-28T14:27:50,107 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2024-02-28T14:27:50,108 running install_egg_info 2024-02-28T14:27:50,112 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/multiqc-1.21-py3.11.egg-info 2024-02-28T14:27:50,124 running install_scripts 2024-02-28T14:27:50,149 creating build/bdist.linux-armv7l/wheel/multiqc-1.21.dist-info/WHEEL 2024-02-28T14:27:50,151 creating '/tmp/pip-wheel-m19u02f1/.tmp-ia9n837r/multiqc-1.21-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-28T14:27:50,153 adding 'multiqc/__init__.py' 2024-02-28T14:27:50,155 adding 'multiqc/__main__.py' 2024-02-28T14:27:50,161 adding 'multiqc/multiqc.py' 2024-02-28T14:27:50,166 adding 'multiqc/modules/__init__.py' 2024-02-28T14:27:50,169 adding 'multiqc/modules/base_module.py' 2024-02-28T14:27:50,171 adding 'multiqc/modules/profile_runtime.py' 2024-02-28T14:27:50,172 adding 'multiqc/modules/software_versions.py' 2024-02-28T14:27:50,174 adding 'multiqc/modules/adapterRemoval/__init__.py' 2024-02-28T14:27:50,176 adding 'multiqc/modules/adapterRemoval/adapterRemoval.py' 2024-02-28T14:27:50,177 adding 'multiqc/modules/afterqc/__init__.py' 2024-02-28T14:27:50,179 adding 'multiqc/modules/afterqc/afterqc.py' 2024-02-28T14:27:50,181 adding 'multiqc/modules/anglerfish/__init__.py' 2024-02-28T14:27:50,182 adding 'multiqc/modules/anglerfish/anglerfish.py' 2024-02-28T14:27:50,184 adding 'multiqc/modules/bakta/__init__.py' 2024-02-28T14:27:50,185 adding 'multiqc/modules/bakta/bakta.py' 2024-02-28T14:27:50,187 adding 'multiqc/modules/bamdst/__init__.py' 2024-02-28T14:27:50,189 adding 'multiqc/modules/bamdst/bamdst.py' 2024-02-28T14:27:50,191 adding 'multiqc/modules/bamtools/__init__.py' 2024-02-28T14:27:50,192 adding 'multiqc/modules/bamtools/bamtools.py' 2024-02-28T14:27:50,194 adding 'multiqc/modules/bamtools/stats.py' 2024-02-28T14:27:50,195 adding 'multiqc/modules/bbduk/__init__.py' 2024-02-28T14:27:50,197 adding 'multiqc/modules/bbduk/bbduk.py' 2024-02-28T14:27:50,199 adding 'multiqc/modules/bbmap/__init__.py' 2024-02-28T14:27:50,200 adding 'multiqc/modules/bbmap/bbmap.py' 2024-02-28T14:27:50,202 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2024-02-28T14:27:50,204 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2024-02-28T14:27:50,205 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2024-02-28T14:27:50,206 adding 'multiqc/modules/bbmap/plot_bhist.py' 2024-02-28T14:27:50,208 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2024-02-28T14:27:50,209 adding 'multiqc/modules/bbmap/plot_covhist.py' 2024-02-28T14:27:50,210 adding 'multiqc/modules/bbmap/plot_idhist.py' 2024-02-28T14:27:50,211 adding 'multiqc/modules/bbmap/plot_ihist.py' 2024-02-28T14:27:50,213 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2024-02-28T14:27:50,214 adding 'multiqc/modules/bbmap/plot_mhist.py' 2024-02-28T14:27:50,215 adding 'multiqc/modules/bbmap/plot_qahist.py' 2024-02-28T14:27:50,216 adding 'multiqc/modules/bbmap/plot_qchist.py' 2024-02-28T14:27:50,218 adding 'multiqc/modules/bbmap/plot_qhist.py' 2024-02-28T14:27:50,220 adding 'multiqc/modules/bcftools/__init__.py' 2024-02-28T14:27:50,221 adding 'multiqc/modules/bcftools/bcftools.py' 2024-02-28T14:27:50,223 adding 'multiqc/modules/bcftools/stats.py' 2024-02-28T14:27:50,225 adding 'multiqc/modules/bcl2fastq/__init__.py' 2024-02-28T14:27:50,227 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2024-02-28T14:27:50,229 adding 'multiqc/modules/bclconvert/__init__.py' 2024-02-28T14:27:50,233 adding 'multiqc/modules/bclconvert/bclconvert.py' 2024-02-28T14:27:50,235 adding 'multiqc/modules/biobambam2/__init__.py' 2024-02-28T14:27:50,236 adding 'multiqc/modules/biobambam2/biobambam2.py' 2024-02-28T14:27:50,238 adding 'multiqc/modules/biobloomtools/__init__.py' 2024-02-28T14:27:50,239 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2024-02-28T14:27:50,241 adding 'multiqc/modules/biscuit/__init__.py' 2024-02-28T14:27:50,245 adding 'multiqc/modules/biscuit/biscuit.py' 2024-02-28T14:27:50,247 adding 'multiqc/modules/bismark/__init__.py' 2024-02-28T14:27:50,249 adding 'multiqc/modules/bismark/bismark.py' 2024-02-28T14:27:50,251 adding 'multiqc/modules/bowtie1/__init__.py' 2024-02-28T14:27:50,252 adding 'multiqc/modules/bowtie1/bowtie1.py' 2024-02-28T14:27:50,254 adding 'multiqc/modules/bowtie2/__init__.py' 2024-02-28T14:27:50,256 adding 'multiqc/modules/bowtie2/bowtie2.py' 2024-02-28T14:27:50,257 adding 'multiqc/modules/bracken/__init__.py' 2024-02-28T14:27:50,258 adding 'multiqc/modules/bracken/bracken.py' 2024-02-28T14:27:50,260 adding 'multiqc/modules/busco/__init__.py' 2024-02-28T14:27:50,261 adding 'multiqc/modules/busco/busco.py' 2024-02-28T14:27:50,262 adding 'multiqc/modules/bustools/__init__.py' 2024-02-28T14:27:50,264 adding 'multiqc/modules/bustools/bustools.py' 2024-02-28T14:27:50,266 adding 'multiqc/modules/ccs/__init__.py' 2024-02-28T14:27:50,268 adding 'multiqc/modules/ccs/ccs.py' 2024-02-28T14:27:50,269 adding 'multiqc/modules/cellranger/__init__.py' 2024-02-28T14:27:50,270 adding 'multiqc/modules/cellranger/cellranger.py' 2024-02-28T14:27:50,273 adding 'multiqc/modules/cellranger/count.py' 2024-02-28T14:27:50,274 adding 'multiqc/modules/cellranger/utils.py' 2024-02-28T14:27:50,276 adding 'multiqc/modules/cellranger/vdj.py' 2024-02-28T14:27:50,278 adding 'multiqc/modules/checkqc/__init__.py' 2024-02-28T14:27:50,280 adding 'multiqc/modules/checkqc/checkqc.py' 2024-02-28T14:27:50,282 adding 'multiqc/modules/clipandmerge/__init__.py' 2024-02-28T14:27:50,283 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2024-02-28T14:27:50,285 adding 'multiqc/modules/clusterflow/__init__.py' 2024-02-28T14:27:50,287 adding 'multiqc/modules/clusterflow/clusterflow.py' 2024-02-28T14:27:50,288 adding 'multiqc/modules/conpair/__init__.py' 2024-02-28T14:27:50,290 adding 'multiqc/modules/conpair/conpair.py' 2024-02-28T14:27:50,292 adding 'multiqc/modules/custom_content/__init__.py' 2024-02-28T14:27:50,295 adding 'multiqc/modules/custom_content/custom_content.py' 2024-02-28T14:27:50,297 adding 'multiqc/modules/cutadapt/__init__.py' 2024-02-28T14:27:50,299 adding 'multiqc/modules/cutadapt/cutadapt.py' 2024-02-28T14:27:50,301 adding 'multiqc/modules/damageprofiler/__init__.py' 2024-02-28T14:27:50,302 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2024-02-28T14:27:50,304 adding 'multiqc/modules/dedup/__init__.py' 2024-02-28T14:27:50,306 adding 'multiqc/modules/dedup/dedup.py' 2024-02-28T14:27:50,308 adding 'multiqc/modules/deeptools/__init__.py' 2024-02-28T14:27:50,309 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2024-02-28T14:27:50,311 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2024-02-28T14:27:50,312 adding 'multiqc/modules/deeptools/deeptools.py' 2024-02-28T14:27:50,313 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2024-02-28T14:27:50,315 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2024-02-28T14:27:50,316 adding 'multiqc/modules/deeptools/plotCoverage.py' 2024-02-28T14:27:50,318 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2024-02-28T14:27:50,319 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2024-02-28T14:27:50,321 adding 'multiqc/modules/deeptools/plotPCA.py' 2024-02-28T14:27:50,322 adding 'multiqc/modules/deeptools/plotProfile.py' 2024-02-28T14:27:50,324 adding 'multiqc/modules/diamond/__init__.py' 2024-02-28T14:27:50,325 adding 'multiqc/modules/diamond/diamond.py' 2024-02-28T14:27:50,327 adding 'multiqc/modules/disambiguate/__init__.py' 2024-02-28T14:27:50,328 adding 'multiqc/modules/disambiguate/disambiguate.py' 2024-02-28T14:27:50,330 adding 'multiqc/modules/dragen/__init__.py' 2024-02-28T14:27:50,331 adding 'multiqc/modules/dragen/coverage_hist.py' 2024-02-28T14:27:50,340 adding 'multiqc/modules/dragen/coverage_metrics.py' 2024-02-28T14:27:50,342 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2024-02-28T14:27:50,343 adding 'multiqc/modules/dragen/dragen.py' 2024-02-28T14:27:50,345 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2024-02-28T14:27:50,346 adding 'multiqc/modules/dragen/fragment_length.py' 2024-02-28T14:27:50,349 adding 'multiqc/modules/dragen/mapping_metrics.py' 2024-02-28T14:27:50,351 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2024-02-28T14:27:50,352 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2024-02-28T14:27:50,354 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2024-02-28T14:27:50,355 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2024-02-28T14:27:50,356 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2024-02-28T14:27:50,358 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2024-02-28T14:27:50,359 adding 'multiqc/modules/dragen/time_metrics.py' 2024-02-28T14:27:50,361 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2024-02-28T14:27:50,362 adding 'multiqc/modules/dragen/utils.py' 2024-02-28T14:27:50,365 adding 'multiqc/modules/dragen/vc_metrics.py' 2024-02-28T14:27:50,366 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2024-02-28T14:27:50,368 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2024-02-28T14:27:50,369 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2024-02-28T14:27:50,371 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2024-02-28T14:27:50,372 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2024-02-28T14:27:50,374 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2024-02-28T14:27:50,375 adding 'multiqc/modules/dragen_fastqc/util.py' 2024-02-28T14:27:50,379 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2024-02-28T14:27:50,381 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2024-02-28T14:27:50,382 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2024-02-28T14:27:50,384 adding 'multiqc/modules/fastp/__init__.py' 2024-02-28T14:27:50,386 adding 'multiqc/modules/fastp/fastp.py' 2024-02-28T14:27:50,388 adding 'multiqc/modules/fastq_screen/__init__.py' 2024-02-28T14:27:50,390 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2024-02-28T14:27:50,391 adding 'multiqc/modules/fastqc/__init__.py' 2024-02-28T14:27:50,397 adding 'multiqc/modules/fastqc/fastqc.py' 2024-02-28T14:27:50,400 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2024-02-28T14:27:50,403 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2024-02-28T14:27:50,405 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2024-02-28T14:27:50,407 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2024-02-28T14:27:50,408 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2024-02-28T14:27:50,409 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2024-02-28T14:27:50,411 adding 'multiqc/modules/featureCounts/__init__.py' 2024-02-28T14:27:50,412 adding 'multiqc/modules/featureCounts/feature_counts.py' 2024-02-28T14:27:50,414 adding 'multiqc/modules/fgbio/ErrorRateByReadPosition.py' 2024-02-28T14:27:50,416 adding 'multiqc/modules/fgbio/__init__.py' 2024-02-28T14:27:50,417 adding 'multiqc/modules/fgbio/fgbio.py' 2024-02-28T14:27:50,418 adding 'multiqc/modules/fgbio/groupreadsbyumi.py' 2024-02-28T14:27:50,420 adding 'multiqc/modules/filtlong/__init__.py' 2024-02-28T14:27:50,421 adding 'multiqc/modules/filtlong/filtlong.py' 2024-02-28T14:27:50,423 adding 'multiqc/modules/flash/__init__.py' 2024-02-28T14:27:50,425 adding 'multiqc/modules/flash/flash.py' 2024-02-28T14:27:50,426 adding 'multiqc/modules/flexbar/__init__.py' 2024-02-28T14:27:50,427 adding 'multiqc/modules/flexbar/flexbar.py' 2024-02-28T14:27:50,429 adding 'multiqc/modules/freyja/__init__.py' 2024-02-28T14:27:50,430 adding 'multiqc/modules/freyja/freyja.py' 2024-02-28T14:27:50,432 adding 'multiqc/modules/gatk/__init__.py' 2024-02-28T14:27:50,434 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2024-02-28T14:27:50,436 adding 'multiqc/modules/gatk/base_recalibrator.py' 2024-02-28T14:27:50,437 adding 'multiqc/modules/gatk/gatk.py' 2024-02-28T14:27:50,439 adding 'multiqc/modules/gatk/varianteval.py' 2024-02-28T14:27:50,440 adding 'multiqc/modules/gffcompare/__init__.py' 2024-02-28T14:27:50,442 adding 'multiqc/modules/gffcompare/gffcompare.py' 2024-02-28T14:27:50,443 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2024-02-28T14:27:50,445 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2024-02-28T14:27:50,446 adding 'multiqc/modules/gopeaks/__init__.py' 2024-02-28T14:27:50,448 adding 'multiqc/modules/gopeaks/gopeaks.py' 2024-02-28T14:27:50,449 adding 'multiqc/modules/happy/__init__.py' 2024-02-28T14:27:50,451 adding 'multiqc/modules/happy/happy.py' 2024-02-28T14:27:50,452 adding 'multiqc/modules/hicexplorer/__init__.py' 2024-02-28T14:27:50,454 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2024-02-28T14:27:50,456 adding 'multiqc/modules/hicpro/__init__.py' 2024-02-28T14:27:50,458 adding 'multiqc/modules/hicpro/hicpro.py' 2024-02-28T14:27:50,460 adding 'multiqc/modules/hicup/__init__.py' 2024-02-28T14:27:50,461 adding 'multiqc/modules/hicup/hicup.py' 2024-02-28T14:27:50,463 adding 'multiqc/modules/hifiasm/__init__.py' 2024-02-28T14:27:50,464 adding 'multiqc/modules/hifiasm/hifiasm.py' 2024-02-28T14:27:50,466 adding 'multiqc/modules/hisat2/__init__.py' 2024-02-28T14:27:50,468 adding 'multiqc/modules/hisat2/hisat2.py' 2024-02-28T14:27:50,469 adding 'multiqc/modules/homer/__init__.py' 2024-02-28T14:27:50,471 adding 'multiqc/modules/homer/findpeaks.py' 2024-02-28T14:27:50,472 adding 'multiqc/modules/homer/homer.py' 2024-02-28T14:27:50,474 adding 'multiqc/modules/homer/tagdirectory.py' 2024-02-28T14:27:50,476 adding 'multiqc/modules/hops/__init__.py' 2024-02-28T14:27:50,478 adding 'multiqc/modules/hops/hops.py' 2024-02-28T14:27:50,479 adding 'multiqc/modules/htseq/__init__.py' 2024-02-28T14:27:50,481 adding 'multiqc/modules/htseq/htseq.py' 2024-02-28T14:27:50,482 adding 'multiqc/modules/humid/__init__.py' 2024-02-28T14:27:50,484 adding 'multiqc/modules/humid/clusters.py' 2024-02-28T14:27:50,485 adding 'multiqc/modules/humid/counts.py' 2024-02-28T14:27:50,486 adding 'multiqc/modules/humid/humid.py' 2024-02-28T14:27:50,487 adding 'multiqc/modules/humid/neighbours.py' 2024-02-28T14:27:50,489 adding 'multiqc/modules/humid/stats.py' 2024-02-28T14:27:50,490 adding 'multiqc/modules/interop/__init__.py' 2024-02-28T14:27:50,493 adding 'multiqc/modules/interop/interop.py' 2024-02-28T14:27:50,494 adding 'multiqc/modules/isoseq/__init__.py' 2024-02-28T14:27:50,496 adding 'multiqc/modules/isoseq/isoseq.py' 2024-02-28T14:27:50,498 adding 'multiqc/modules/ivar/__init__.py' 2024-02-28T14:27:50,499 adding 'multiqc/modules/ivar/ivar.py' 2024-02-28T14:27:50,501 adding 'multiqc/modules/jcvi/__init__.py' 2024-02-28T14:27:50,503 adding 'multiqc/modules/jcvi/jcvi.py' 2024-02-28T14:27:50,504 adding 'multiqc/modules/jellyfish/__init__.py' 2024-02-28T14:27:50,506 adding 'multiqc/modules/jellyfish/jellyfish.py' 2024-02-28T14:27:50,508 adding 'multiqc/modules/kaiju/__init__.py' 2024-02-28T14:27:50,510 adding 'multiqc/modules/kaiju/kaiju.py' 2024-02-28T14:27:50,511 adding 'multiqc/modules/kallisto/__init__.py' 2024-02-28T14:27:50,513 adding 'multiqc/modules/kallisto/kallisto.py' 2024-02-28T14:27:50,514 adding 'multiqc/modules/kat/__init__.py' 2024-02-28T14:27:50,516 adding 'multiqc/modules/kat/kat.py' 2024-02-28T14:27:50,517 adding 'multiqc/modules/kraken/__init__.py' 2024-02-28T14:27:50,520 adding 'multiqc/modules/kraken/kraken.py' 2024-02-28T14:27:50,521 adding 'multiqc/modules/leehom/__init__.py' 2024-02-28T14:27:50,523 adding 'multiqc/modules/leehom/leehom.py' 2024-02-28T14:27:50,524 adding 'multiqc/modules/librarian/__init__.py' 2024-02-28T14:27:50,526 adding 'multiqc/modules/librarian/librarian.py' 2024-02-28T14:27:50,527 adding 'multiqc/modules/lima/__init__.py' 2024-02-28T14:27:50,529 adding 'multiqc/modules/lima/lima.py' 2024-02-28T14:27:50,531 adding 'multiqc/modules/longranger/__init__.py' 2024-02-28T14:27:50,533 adding 'multiqc/modules/longranger/longranger.py' 2024-02-28T14:27:50,535 adding 'multiqc/modules/macs2/__init__.py' 2024-02-28T14:27:50,536 adding 'multiqc/modules/macs2/macs2.py' 2024-02-28T14:27:50,537 adding 'multiqc/modules/malt/__init__.py' 2024-02-28T14:27:50,539 adding 'multiqc/modules/malt/malt.py' 2024-02-28T14:27:50,540 adding 'multiqc/modules/mapdamage/__init__.py' 2024-02-28T14:27:50,542 adding 'multiqc/modules/mapdamage/mapdamage.py' 2024-02-28T14:27:50,544 adding 'multiqc/modules/megahit/__init__.py' 2024-02-28T14:27:50,545 adding 'multiqc/modules/megahit/megahit.py' 2024-02-28T14:27:50,547 adding 'multiqc/modules/metaphlan/__init__.py' 2024-02-28T14:27:50,549 adding 'multiqc/modules/metaphlan/metaphlan.py' 2024-02-28T14:27:50,550 adding 'multiqc/modules/methylqa/__init__.py' 2024-02-28T14:27:50,552 adding 'multiqc/modules/methylqa/methylqa.py' 2024-02-28T14:27:50,553 adding 'multiqc/modules/minionqc/__init__.py' 2024-02-28T14:27:50,555 adding 'multiqc/modules/minionqc/minionqc.py' 2024-02-28T14:27:50,557 adding 'multiqc/modules/mirtop/__init__.py' 2024-02-28T14:27:50,558 adding 'multiqc/modules/mirtop/mirtop.py' 2024-02-28T14:27:50,560 adding 'multiqc/modules/mirtrace/__init__.py' 2024-02-28T14:27:50,562 adding 'multiqc/modules/mirtrace/mirtrace.py' 2024-02-28T14:27:50,563 adding 'multiqc/modules/mosdepth/__init__.py' 2024-02-28T14:27:50,566 adding 'multiqc/modules/mosdepth/mosdepth.py' 2024-02-28T14:27:50,568 adding 'multiqc/modules/motus/__init__.py' 2024-02-28T14:27:50,569 adding 'multiqc/modules/motus/motus.py' 2024-02-28T14:27:50,571 adding 'multiqc/modules/mtnucratio/__init__.py' 2024-02-28T14:27:50,572 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2024-02-28T14:27:50,574 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2024-02-28T14:27:50,576 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2024-02-28T14:27:50,578 adding 'multiqc/modules/nanostat/__init__.py' 2024-02-28T14:27:50,580 adding 'multiqc/modules/nanostat/nanostat.py' 2024-02-28T14:27:50,581 adding 'multiqc/modules/nextclade/__init__.py' 2024-02-28T14:27:50,583 adding 'multiqc/modules/nextclade/nextclade.py' 2024-02-28T14:27:50,584 adding 'multiqc/modules/ngsderive/__init__.py' 2024-02-28T14:27:50,587 adding 'multiqc/modules/ngsderive/ngsderive.py' 2024-02-28T14:27:50,588 adding 'multiqc/modules/nonpareil/__init__.py' 2024-02-28T14:27:50,591 adding 'multiqc/modules/nonpareil/nonpareil.py' 2024-02-28T14:27:50,592 adding 'multiqc/modules/odgi/__init__.py' 2024-02-28T14:27:50,595 adding 'multiqc/modules/odgi/odgi.py' 2024-02-28T14:27:50,596 adding 'multiqc/modules/optitype/__init__.py' 2024-02-28T14:27:50,598 adding 'multiqc/modules/optitype/optitype.py' 2024-02-28T14:27:50,600 adding 'multiqc/modules/pangolin/__init__.py' 2024-02-28T14:27:50,601 adding 'multiqc/modules/pangolin/pangolin.py' 2024-02-28T14:27:50,603 adding 'multiqc/modules/pbmarkdup/__init__.py' 2024-02-28T14:27:50,605 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2024-02-28T14:27:50,606 adding 'multiqc/modules/peddy/__init__.py' 2024-02-28T14:27:50,608 adding 'multiqc/modules/peddy/peddy.py' 2024-02-28T14:27:50,611 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2024-02-28T14:27:50,612 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2024-02-28T14:27:50,615 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2024-02-28T14:27:50,617 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2024-02-28T14:27:50,619 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2024-02-28T14:27:50,620 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2024-02-28T14:27:50,622 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2024-02-28T14:27:50,624 adding 'multiqc/modules/picard/HsMetrics.py' 2024-02-28T14:27:50,626 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2024-02-28T14:27:50,627 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2024-02-28T14:27:50,628 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2024-02-28T14:27:50,630 adding 'multiqc/modules/picard/MarkDuplicates.py' 2024-02-28T14:27:50,632 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2024-02-28T14:27:50,633 adding 'multiqc/modules/picard/OxoGMetrics.py' 2024-02-28T14:27:50,634 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2024-02-28T14:27:50,636 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2024-02-28T14:27:50,637 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2024-02-28T14:27:50,639 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2024-02-28T14:27:50,640 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2024-02-28T14:27:50,642 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2024-02-28T14:27:50,644 adding 'multiqc/modules/picard/ValidateSamFile.py' 2024-02-28T14:27:50,646 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2024-02-28T14:27:50,647 adding 'multiqc/modules/picard/WgsMetrics.py' 2024-02-28T14:27:50,648 adding 'multiqc/modules/picard/__init__.py' 2024-02-28T14:27:50,650 adding 'multiqc/modules/picard/picard.py' 2024-02-28T14:27:50,651 adding 'multiqc/modules/picard/util.py' 2024-02-28T14:27:50,653 adding 'multiqc/modules/porechop/__init__.py' 2024-02-28T14:27:50,655 adding 'multiqc/modules/porechop/porechop.py' 2024-02-28T14:27:50,656 adding 'multiqc/modules/preseq/__init__.py' 2024-02-28T14:27:50,659 adding 'multiqc/modules/preseq/preseq.py' 2024-02-28T14:27:50,660 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2024-02-28T14:27:50,662 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2024-02-28T14:27:50,663 adding 'multiqc/modules/prokka/__init__.py' 2024-02-28T14:27:50,665 adding 'multiqc/modules/prokka/prokka.py' 2024-02-28T14:27:50,667 adding 'multiqc/modules/purple/__init__.py' 2024-02-28T14:27:50,668 adding 'multiqc/modules/purple/purple.py' 2024-02-28T14:27:50,670 adding 'multiqc/modules/pychopper/__init__.py' 2024-02-28T14:27:50,672 adding 'multiqc/modules/pychopper/pychopper.py' 2024-02-28T14:27:50,673 adding 'multiqc/modules/pycoqc/__init__.py' 2024-02-28T14:27:50,675 adding 'multiqc/modules/pycoqc/pycoqc.py' 2024-02-28T14:27:50,677 adding 'multiqc/modules/qc3C/__init__.py' 2024-02-28T14:27:50,681 adding 'multiqc/modules/qc3C/qc3C.py' 2024-02-28T14:27:50,683 adding 'multiqc/modules/qorts/__init__.py' 2024-02-28T14:27:50,685 adding 'multiqc/modules/qorts/qorts.py' 2024-02-28T14:27:50,689 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2024-02-28T14:27:50,691 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2024-02-28T14:27:50,693 adding 'multiqc/modules/qualimap/__init__.py' 2024-02-28T14:27:50,694 adding 'multiqc/modules/qualimap/qualimap.py' 2024-02-28T14:27:50,696 adding 'multiqc/modules/quast/__init__.py' 2024-02-28T14:27:50,697 adding 'multiqc/modules/quast/quast.py' 2024-02-28T14:27:50,699 adding 'multiqc/modules/rna_seqc/__init__.py' 2024-02-28T14:27:50,701 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2024-02-28T14:27:50,703 adding 'multiqc/modules/rockhopper/__init__.py' 2024-02-28T14:27:50,704 adding 'multiqc/modules/rockhopper/rockhopper.py' 2024-02-28T14:27:50,706 adding 'multiqc/modules/rsem/__init__.py' 2024-02-28T14:27:50,708 adding 'multiqc/modules/rsem/rsem.py' 2024-02-28T14:27:50,709 adding 'multiqc/modules/rseqc/__init__.py' 2024-02-28T14:27:50,711 adding 'multiqc/modules/rseqc/bam_stat.py' 2024-02-28T14:27:50,712 adding 'multiqc/modules/rseqc/gene_body_coverage.py' 2024-02-28T14:27:50,714 adding 'multiqc/modules/rseqc/infer_experiment.py' 2024-02-28T14:27:50,715 adding 'multiqc/modules/rseqc/inner_distance.py' 2024-02-28T14:27:50,716 adding 'multiqc/modules/rseqc/junction_annotation.py' 2024-02-28T14:27:50,717 adding 'multiqc/modules/rseqc/junction_saturation.py' 2024-02-28T14:27:50,719 adding 'multiqc/modules/rseqc/read_distribution.py' 2024-02-28T14:27:50,720 adding 'multiqc/modules/rseqc/read_duplication.py' 2024-02-28T14:27:50,721 adding 'multiqc/modules/rseqc/read_gc.py' 2024-02-28T14:27:50,722 adding 'multiqc/modules/rseqc/rseqc.py' 2024-02-28T14:27:50,724 adding 'multiqc/modules/rseqc/tin.py' 2024-02-28T14:27:50,726 adding 'multiqc/modules/rseqc/assets/js/multiqc_rseqc.js' 2024-02-28T14:27:50,728 adding 'multiqc/modules/salmon/__init__.py' 2024-02-28T14:27:50,729 adding 'multiqc/modules/salmon/salmon.py' 2024-02-28T14:27:50,730 adding 'multiqc/modules/sambamba/__init__.py' 2024-02-28T14:27:50,732 adding 'multiqc/modules/sambamba/markdup.py' 2024-02-28T14:27:50,733 adding 'multiqc/modules/sambamba/sambamba.py' 2024-02-28T14:27:50,735 adding 'multiqc/modules/samblaster/__init__.py' 2024-02-28T14:27:50,736 adding 'multiqc/modules/samblaster/samblaster.py' 2024-02-28T14:27:50,738 adding 'multiqc/modules/samtools/__init__.py' 2024-02-28T14:27:50,740 adding 'multiqc/modules/samtools/coverage.py' 2024-02-28T14:27:50,741 adding 'multiqc/modules/samtools/flagstat.py' 2024-02-28T14:27:50,743 adding 'multiqc/modules/samtools/idxstats.py' 2024-02-28T14:27:50,744 adding 'multiqc/modules/samtools/rmdup.py' 2024-02-28T14:27:50,745 adding 'multiqc/modules/samtools/samtools.py' 2024-02-28T14:27:50,747 adding 'multiqc/modules/samtools/stats.py' 2024-02-28T14:27:50,749 adding 'multiqc/modules/sargasso/__init__.py' 2024-02-28T14:27:50,750 adding 'multiqc/modules/sargasso/sargasso.py' 2024-02-28T14:27:50,752 adding 'multiqc/modules/seqera_cli/__init__.py' 2024-02-28T14:27:50,754 adding 'multiqc/modules/seqera_cli/seqera_cli.py' 2024-02-28T14:27:50,755 adding 'multiqc/modules/seqwho/__init__.py' 2024-02-28T14:27:50,757 adding 'multiqc/modules/seqwho/seqwho.py' 2024-02-28T14:27:50,759 adding 'multiqc/modules/seqyclean/__init__.py' 2024-02-28T14:27:50,760 adding 'multiqc/modules/seqyclean/seqyclean.py' 2024-02-28T14:27:50,762 adding 'multiqc/modules/sexdeterrmine/__init__.py' 2024-02-28T14:27:50,763 adding 'multiqc/modules/sexdeterrmine/sexdeterrmine.py' 2024-02-28T14:27:50,765 adding 'multiqc/modules/sickle/__init__.py' 2024-02-28T14:27:50,766 adding 'multiqc/modules/sickle/sickle.py' 2024-02-28T14:27:50,768 adding 'multiqc/modules/skewer/__init__.py' 2024-02-28T14:27:50,769 adding 'multiqc/modules/skewer/skewer.py' 2024-02-28T14:27:50,771 adding 'multiqc/modules/slamdunk/__init__.py' 2024-02-28T14:27:50,773 adding 'multiqc/modules/slamdunk/slamdunk.py' 2024-02-28T14:27:50,775 adding 'multiqc/modules/snippy/__init__.py' 2024-02-28T14:27:50,777 adding 'multiqc/modules/snippy/snippy.py' 2024-02-28T14:27:50,778 adding 'multiqc/modules/snpeff/__init__.py' 2024-02-28T14:27:50,780 adding 'multiqc/modules/snpeff/snpeff.py' 2024-02-28T14:27:50,782 adding 'multiqc/modules/snpsplit/__init__.py' 2024-02-28T14:27:50,784 adding 'multiqc/modules/snpsplit/snpsplit.py' 2024-02-28T14:27:50,785 adding 'multiqc/modules/somalier/__init__.py' 2024-02-28T14:27:50,788 adding 'multiqc/modules/somalier/somalier.py' 2024-02-28T14:27:50,790 adding 'multiqc/modules/sortmerna/__init__.py' 2024-02-28T14:27:50,792 adding 'multiqc/modules/sortmerna/sortmerna.py' 2024-02-28T14:27:50,793 adding 'multiqc/modules/sourmash/__init__.py' 2024-02-28T14:27:50,795 adding 'multiqc/modules/sourmash/compare.py' 2024-02-28T14:27:50,796 adding 'multiqc/modules/sourmash/gather.py' 2024-02-28T14:27:50,798 adding 'multiqc/modules/sourmash/sourmash.py' 2024-02-28T14:27:50,799 adding 'multiqc/modules/spaceranger/__init__.py' 2024-02-28T14:27:50,801 adding 'multiqc/modules/spaceranger/_utils.py' 2024-02-28T14:27:50,803 adding 'multiqc/modules/spaceranger/count.py' 2024-02-28T14:27:50,804 adding 'multiqc/modules/spaceranger/spaceranger.py' 2024-02-28T14:27:50,806 adding 'multiqc/modules/stacks/__init__.py' 2024-02-28T14:27:50,807 adding 'multiqc/modules/stacks/stacks.py' 2024-02-28T14:27:50,809 adding 'multiqc/modules/star/__init__.py' 2024-02-28T14:27:50,810 adding 'multiqc/modules/star/star.py' 2024-02-28T14:27:50,812 adding 'multiqc/modules/supernova/__init__.py' 2024-02-28T14:27:50,815 adding 'multiqc/modules/supernova/supernova.py' 2024-02-28T14:27:50,816 adding 'multiqc/modules/theta2/__init__.py' 2024-02-28T14:27:50,817 adding 'multiqc/modules/theta2/theta2.py' 2024-02-28T14:27:50,819 adding 'multiqc/modules/tophat/__init__.py' 2024-02-28T14:27:50,820 adding 'multiqc/modules/tophat/tophat.py' 2024-02-28T14:27:50,822 adding 'multiqc/modules/trimmomatic/__init__.py' 2024-02-28T14:27:50,823 adding 'multiqc/modules/trimmomatic/trimmomatic.py' 2024-02-28T14:27:50,825 adding 'multiqc/modules/truvari/__init__.py' 2024-02-28T14:27:50,827 adding 'multiqc/modules/truvari/bench.py' 2024-02-28T14:27:50,828 adding 'multiqc/modules/truvari/truvari.py' 2024-02-28T14:27:50,829 adding 'multiqc/modules/umitools/__init__.py' 2024-02-28T14:27:50,831 adding 'multiqc/modules/umitools/umitools.py' 2024-02-28T14:27:50,833 adding 'multiqc/modules/varscan2/__init__.py' 2024-02-28T14:27:50,834 adding 'multiqc/modules/varscan2/varscan2.py' 2024-02-28T14:27:50,836 adding 'multiqc/modules/vcftools/__init__.py' 2024-02-28T14:27:50,837 adding 'multiqc/modules/vcftools/relatedness2.py' 2024-02-28T14:27:50,838 adding 'multiqc/modules/vcftools/tstv_by_count.py' 2024-02-28T14:27:50,840 adding 'multiqc/modules/vcftools/tstv_by_qual.py' 2024-02-28T14:27:50,841 adding 'multiqc/modules/vcftools/tstv_summary.py' 2024-02-28T14:27:50,842 adding 'multiqc/modules/vcftools/vcftools.py' 2024-02-28T14:27:50,844 adding 'multiqc/modules/vep/__init__.py' 2024-02-28T14:27:50,846 adding 'multiqc/modules/vep/vep.py' 2024-02-28T14:27:50,848 adding 'multiqc/modules/verifybamid/__init__.py' 2024-02-28T14:27:50,850 adding 'multiqc/modules/verifybamid/verifybamid.py' 2024-02-28T14:27:50,851 adding 'multiqc/modules/whatshap/__init__.py' 2024-02-28T14:27:50,854 adding 'multiqc/modules/whatshap/whatshap.py' 2024-02-28T14:27:50,855 adding 'multiqc/modules/xengsort/__init__.py' 2024-02-28T14:27:50,857 adding 'multiqc/modules/xengsort/xengsort.py' 2024-02-28T14:27:50,858 adding 'multiqc/modules/xenome/__init__.py' 2024-02-28T14:27:50,860 adding 'multiqc/modules/xenome/xenome.py' 2024-02-28T14:27:50,862 adding 'multiqc/plots/__init__.py' 2024-02-28T14:27:50,864 adding 'multiqc/plots/bargraph.py' 2024-02-28T14:27:50,865 adding 'multiqc/plots/beeswarm.py' 2024-02-28T14:27:50,866 adding 'multiqc/plots/box.py' 2024-02-28T14:27:50,868 adding 'multiqc/plots/heatmap.py' 2024-02-28T14:27:50,869 adding 'multiqc/plots/linegraph.py' 2024-02-28T14:27:50,871 adding 'multiqc/plots/scatter.py' 2024-02-28T14:27:50,872 adding 'multiqc/plots/table.py' 2024-02-28T14:27:50,875 adding 'multiqc/plots/table_object.py' 2024-02-28T14:27:50,876 adding 'multiqc/plots/violin.py' 2024-02-28T14:27:50,878 adding 'multiqc/plots/plotly/__init__.py' 2024-02-28T14:27:50,880 adding 'multiqc/plots/plotly/bar.py' 2024-02-28T14:27:50,881 adding 'multiqc/plots/plotly/box.py' 2024-02-28T14:27:50,883 adding 'multiqc/plots/plotly/heatmap.py' 2024-02-28T14:27:50,885 adding 'multiqc/plots/plotly/line.py' 2024-02-28T14:27:50,888 adding 'multiqc/plots/plotly/plot.py' 2024-02-28T14:27:50,890 adding 'multiqc/plots/plotly/scatter.py' 2024-02-28T14:27:50,893 adding 'multiqc/plots/plotly/table.py' 2024-02-28T14:27:50,896 adding 'multiqc/plots/plotly/violin.py' 2024-02-28T14:27:50,898 adding 'multiqc/templates/__init__.py' 2024-02-28T14:27:50,900 adding 'multiqc/templates/default/__init__.py' 2024-02-28T14:27:50,901 adding 'multiqc/templates/default/base.html' 2024-02-28T14:27:50,903 adding 'multiqc/templates/default/content.html' 2024-02-28T14:27:50,904 adding 'multiqc/templates/default/foot.html' 2024-02-28T14:27:50,905 adding 'multiqc/templates/default/footer.html' 2024-02-28T14:27:50,906 adding 'multiqc/templates/default/general_stats.html' 2024-02-28T14:27:50,908 adding 'multiqc/templates/default/head.html' 2024-02-28T14:27:50,909 adding 'multiqc/templates/default/header.html' 2024-02-28T14:27:50,910 adding 'multiqc/templates/default/includes.html' 2024-02-28T14:27:50,911 adding 'multiqc/templates/default/nav.html' 2024-02-28T14:27:50,915 adding 'multiqc/templates/default/toolbox.html' 2024-02-28T14:27:50,925 adding 'multiqc/templates/default/assets/css/bootstrap.min.css' 2024-02-28T14:27:50,928 adding 'multiqc/templates/default/assets/css/default_multiqc.css' 2024-02-28T14:27:50,930 adding 'multiqc/templates/default/assets/css/jquery.toast.css' 2024-02-28T14:27:50,933 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot' 2024-02-28T14:27:50,953 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg' 2024-02-28T14:27:50,960 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf' 2024-02-28T14:27:50,964 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff' 2024-02-28T14:27:50,966 adding 'multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2' 2024-02-28T14:27:50,969 adding 'multiqc/templates/default/assets/img/MultiQC_logo.png' 2024-02-28T14:27:50,970 adding 'multiqc/templates/default/assets/img/MultiQC_logo_dark.svg' 2024-02-28T14:27:50,971 adding 'multiqc/templates/default/assets/img/favicon-16x16.png' 2024-02-28T14:27:50,973 adding 'multiqc/templates/default/assets/img/favicon-32x32.png' 2024-02-28T14:27:50,974 adding 'multiqc/templates/default/assets/img/favicon-96x96.png' 2024-02-28T14:27:50,976 adding 'multiqc/templates/default/assets/img/seqera_logo.png' 2024-02-28T14:27:50,977 adding 'multiqc/templates/default/assets/img/seqera_logo_mono.png' 2024-02-28T14:27:50,979 adding 'multiqc/templates/default/assets/js/flat.js' 2024-02-28T14:27:50,981 adding 'multiqc/templates/default/assets/js/multiqc.js' 2024-02-28T14:27:50,983 adding 'multiqc/templates/default/assets/js/plotting.js' 2024-02-28T14:27:50,985 adding 'multiqc/templates/default/assets/js/tables.js' 2024-02-28T14:27:50,990 adding 'multiqc/templates/default/assets/js/toolbox.js' 2024-02-28T14:27:50,992 adding 'multiqc/templates/default/assets/js/packages/FileSaver.min.js' 2024-02-28T14:27:50,996 adding 'multiqc/templates/default/assets/js/packages/bootstrap.min.js' 2024-02-28T14:27:50,998 adding 'multiqc/templates/default/assets/js/packages/clipboard.min.js' 2024-02-28T14:27:51,011 adding 'multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js' 2024-02-28T14:27:51,016 adding 'multiqc/templates/default/assets/js/packages/jquery-ui.min.js' 2024-02-28T14:27:51,021 adding 'multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js' 2024-02-28T14:27:51,023 adding 'multiqc/templates/default/assets/js/packages/jquery.toast.min.js' 2024-02-28T14:27:51,035 adding 'multiqc/templates/default/assets/js/packages/jszip.min.js' 2024-02-28T14:27:51,037 adding 'multiqc/templates/default/assets/js/packages/lz-string.min.js' 2024-02-28T14:27:52,031 adding 'multiqc/templates/default/assets/js/packages/plotly-2.27.0.js' 2024-02-28T14:27:52,516 adding 'multiqc/templates/default/assets/js/packages/plotly-2.27.0.min.js' 2024-02-28T14:27:52,540 adding 'multiqc/templates/default/assets/js/plots/bar.js' 2024-02-28T14:27:52,542 adding 'multiqc/templates/default/assets/js/plots/box.js' 2024-02-28T14:27:52,543 adding 'multiqc/templates/default/assets/js/plots/heatmap.js' 2024-02-28T14:27:52,544 adding 'multiqc/templates/default/assets/js/plots/line.js' 2024-02-28T14:27:52,546 adding 'multiqc/templates/default/assets/js/plots/scatter.js' 2024-02-28T14:27:52,548 adding 'multiqc/templates/default/assets/js/plots/violin.js' 2024-02-28T14:27:52,549 adding 'multiqc/templates/gathered/__init__.py' 2024-02-28T14:27:52,551 adding 'multiqc/templates/gathered/content.html' 2024-02-28T14:27:52,552 adding 'multiqc/templates/gathered/nav.html' 2024-02-28T14:27:52,554 adding 'multiqc/templates/geo/__init__.py' 2024-02-28T14:27:52,555 adding 'multiqc/templates/geo/includes.html' 2024-02-28T14:27:52,565 adding 'multiqc/templates/geo/assets/css/bootstrap.min.css' 2024-02-28T14:27:52,567 adding 'multiqc/templates/geo/assets/img/emailme.gif' 2024-02-28T14:27:52,573 adding 'multiqc/templates/geo/assets/img/flames.gif' 2024-02-28T14:27:52,575 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings-white.png' 2024-02-28T14:27:52,577 adding 'multiqc/templates/geo/assets/img/glyphicons-halflings.png' 2024-02-28T14:27:52,579 adding 'multiqc/templates/geo/assets/img/hot.gif' 2024-02-28T14:27:52,589 adding 'multiqc/templates/geo/assets/img/mchammer.gif' 2024-02-28T14:27:52,592 adding 'multiqc/templates/geo/assets/img/microfab.gif' 2024-02-28T14:27:52,593 adding 'multiqc/templates/geo/assets/img/new.gif' 2024-02-28T14:27:52,595 adding 'multiqc/templates/geo/assets/img/new2.gif' 2024-02-28T14:27:52,597 adding 'multiqc/templates/geo/assets/img/progress.gif' 2024-02-28T14:27:52,598 adding 'multiqc/templates/geo/assets/img/rainbow.gif' 2024-02-28T14:27:52,600 adding 'multiqc/templates/geo/assets/img/stars.gif' 2024-02-28T14:27:52,602 adding 'multiqc/templates/highcharts/__init__.py' 2024-02-28T14:27:52,603 adding 'multiqc/templates/highcharts/includes.html' 2024-02-28T14:27:52,606 adding 'multiqc/templates/highcharts/assets/css/default_multiqc.css' 2024-02-28T14:27:52,608 adding 'multiqc/templates/highcharts/assets/js/multiqc_mpl.js' 2024-02-28T14:27:52,614 adding 'multiqc/templates/highcharts/assets/js/multiqc_plotting.js' 2024-02-28T14:27:52,617 adding 'multiqc/templates/highcharts/assets/js/multiqc_tables.js' 2024-02-28T14:27:52,621 adding 'multiqc/templates/highcharts/assets/js/multiqc_toolbox.js' 2024-02-28T14:27:52,623 adding 'multiqc/templates/highcharts/assets/js/packages/highcharts.export-csv.js' 2024-02-28T14:27:52,625 adding 'multiqc/templates/highcharts/assets/js/packages/highcharts.exporting.js' 2024-02-28T14:27:52,627 adding 'multiqc/templates/highcharts/assets/js/packages/highcharts.heatmap.js' 2024-02-28T14:27:52,654 adding 'multiqc/templates/highcharts/assets/js/packages/highcharts.js' 2024-02-28T14:27:52,657 adding 'multiqc/templates/highcharts/assets/js/packages/highcharts.offline-exporting.js' 2024-02-28T14:27:52,659 adding 'multiqc/templates/highcharts/plots/__init__.py' 2024-02-28T14:27:52,661 adding 'multiqc/templates/highcharts/plots/bargraph.py' 2024-02-28T14:27:52,663 adding 'multiqc/templates/highcharts/plots/beeswarm.py' 2024-02-28T14:27:52,665 adding 'multiqc/templates/highcharts/plots/boxplot.py' 2024-02-28T14:27:52,666 adding 'multiqc/templates/highcharts/plots/heatmap.py' 2024-02-28T14:27:52,669 adding 'multiqc/templates/highcharts/plots/linegraph.py' 2024-02-28T14:27:52,670 adding 'multiqc/templates/highcharts/plots/scatter.py' 2024-02-28T14:27:52,673 adding 'multiqc/templates/highcharts/plots/table.py' 2024-02-28T14:27:52,675 adding 'multiqc/templates/highcharts/plots/table_object.py' 2024-02-28T14:27:52,677 adding 'multiqc/templates/sections/__init__.py' 2024-02-28T14:27:52,678 adding 'multiqc/templates/sections/content.html' 2024-02-28T14:27:52,680 adding 'multiqc/templates/simple/__init__.py' 2024-02-28T14:27:52,681 adding 'multiqc/templates/simple/foot.html' 2024-02-28T14:27:52,682 adding 'multiqc/templates/simple/header.html' 2024-02-28T14:27:52,684 adding 'multiqc/templates/simple/includes.html' 2024-02-28T14:27:52,685 adding 'multiqc/templates/simple/nav.html' 2024-02-28T14:27:52,686 adding 'multiqc/templates/simple/toolbox.html' 2024-02-28T14:27:52,688 adding 'multiqc/utils/__init__.py' 2024-02-28T14:27:52,690 adding 'multiqc/utils/config.py' 2024-02-28T14:27:52,692 adding 'multiqc/utils/config_defaults.yaml' 2024-02-28T14:27:52,694 adding 'multiqc/utils/log.py' 2024-02-28T14:27:52,696 adding 'multiqc/utils/lzstring.py' 2024-02-28T14:27:52,697 adding 'multiqc/utils/megaqc.py' 2024-02-28T14:27:52,699 adding 'multiqc/utils/mqc_colour.py' 2024-02-28T14:27:52,700 adding 'multiqc/utils/plugin_hooks.py' 2024-02-28T14:27:52,703 adding 'multiqc/utils/report.py' 2024-02-28T14:27:52,707 adding 'multiqc/utils/search_patterns.yaml' 2024-02-28T14:27:52,708 adding 'multiqc/utils/software_versions.py' 2024-02-28T14:27:52,710 adding 'multiqc/utils/strict_helpers.py' 2024-02-28T14:27:52,711 adding 'multiqc/utils/util_functions.py' 2024-02-28T14:27:52,718 adding 'multiqc-1.21.dist-info/LICENSE' 2024-02-28T14:27:52,725 adding 'multiqc-1.21.dist-info/METADATA' 2024-02-28T14:27:52,726 adding 'multiqc-1.21.dist-info/WHEEL' 2024-02-28T14:27:52,727 adding 'multiqc-1.21.dist-info/entry_points.txt' 2024-02-28T14:27:52,728 adding 'multiqc-1.21.dist-info/top_level.txt' 2024-02-28T14:27:52,736 adding 'multiqc-1.21.dist-info/RECORD' 2024-02-28T14:27:52,799 removing build/bdist.linux-armv7l/wheel 2024-02-28T14:27:53,093 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2024-02-28T14:27:53,188 Created wheel for multiqc: filename=multiqc-1.21-py3-none-any.whl size=4590994 sha256=66bad70b6b309118590096feb58c3855aa0a646c5828d5162776b3e954dcabb0 2024-02-28T14:27:53,189 Stored in directory: /tmp/pip-ephem-wheel-cache-b177w0ef/wheels/70/15/03/efc05a21cd0ed60495b5128973b261ab0c7c31eaaa76f990cf 2024-02-28T14:27:53,237 Successfully built multiqc 2024-02-28T14:27:53,349 Removed build tracker: '/tmp/pip-build-tracker-kr0z51ro'