2024-02-28T23:19:39,317 Created temporary directory: /tmp/pip-build-tracker-jin6su5p 2024-02-28T23:19:39,318 Initialized build tracking at /tmp/pip-build-tracker-jin6su5p 2024-02-28T23:19:39,319 Created build tracker: /tmp/pip-build-tracker-jin6su5p 2024-02-28T23:19:39,319 Entered build tracker: /tmp/pip-build-tracker-jin6su5p 2024-02-28T23:19:39,320 Created temporary directory: /tmp/pip-wheel-nhx583qj 2024-02-28T23:19:39,323 Created temporary directory: /tmp/pip-ephem-wheel-cache-5m2s1nzr 2024-02-28T23:19:39,347 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-02-28T23:19:39,351 2 location(s) to search for versions of mobspy: 2024-02-28T23:19:39,351 * https://pypi.org/simple/mobspy/ 2024-02-28T23:19:39,351 * https://www.piwheels.org/simple/mobspy/ 2024-02-28T23:19:39,352 Fetching project page and analyzing links: https://pypi.org/simple/mobspy/ 2024-02-28T23:19:39,352 Getting page https://pypi.org/simple/mobspy/ 2024-02-28T23:19:39,354 Found index url https://pypi.org/simple/ 2024-02-28T23:19:39,574 Fetched page https://pypi.org/simple/mobspy/ as application/vnd.pypi.simple.v1+json 2024-02-28T23:19:39,578 Found link https://files.pythonhosted.org/packages/2f/03/165ae021d9a66bed39f8633ccca9a90d39c4b6f1f66d4da35ae3c1735018/mobspy-1.0.2.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.0.2 2024-02-28T23:19:39,579 Found link https://files.pythonhosted.org/packages/a4/71/dfc85103aecaeeaf86f226d8f1cd66dae1546eeff44a8182b4b8dd795f00/mobspy-1.0.3.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.0.3 2024-02-28T23:19:39,580 Found link https://files.pythonhosted.org/packages/29/5f/4009cc0078cb2521f37a724700a07b84dd835f1e5b172314cc34a46c5d6a/mobspy-1.0.4.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.0.4 2024-02-28T23:19:39,581 Found link https://files.pythonhosted.org/packages/fe/59/901ffe8a6d60395c24faa247183ecc54ebe5609824fe95184b21e6d8a197/mobspy-1.0.5.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.0.5 2024-02-28T23:19:39,582 Found link https://files.pythonhosted.org/packages/fc/9f/00f7c1c2fdd39b15e3177a1f5e3c9da5b1a1ce5f93503843a7daf1413a3f/mobspy-1.1.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.1 2024-02-28T23:19:39,583 Found link https://files.pythonhosted.org/packages/9b/40/0fd96ff71c6023c91d9634ea372a40700b441435ac2abe091f2190d93ab2/mobspy-1.1.2.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.1.2 2024-02-28T23:19:39,584 Found link https://files.pythonhosted.org/packages/81/43/2e0789240f94acd1b5aedd491f69dd7559f5206f0906f53c799540ee6ead/mobspy-1.1.3.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 1.1.3 2024-02-28T23:19:39,585 Found link https://files.pythonhosted.org/packages/d1/a8/f6159cb514e4430b16fab1bbe0270ec127cfb3b3603f6c84e1bc5823d75c/mobspy-2.0.1.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.0.1 2024-02-28T23:19:39,586 Found link https://files.pythonhosted.org/packages/ea/fc/389bb58d5e87294ec724c28456a3b9be8d59b375f90494797fec4422e4a9/mobspy-2.0.2.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.0.2 2024-02-28T23:19:39,587 Found link https://files.pythonhosted.org/packages/4f/19/ae2b85153a6f91cbd12f4b8ed6b0962cfc4d839f3e46f79197163d85140c/mobspy-2.0.3.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.0.3 2024-02-28T23:19:39,588 Found link https://files.pythonhosted.org/packages/a0/17/3f377b631bee81a8b91f8e846c63f3c421727f47cf5d0d02c85fb040453d/mobspy-2.0.4.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.0.4 2024-02-28T23:19:39,589 Skipping link: No binaries permitted for mobspy: https://files.pythonhosted.org/packages/f2/0a/bebf51fa671fe52c59e5d1290ab2f8946eb57232a98858c54801b141b935/mobspy-2.2.2-py3-none-any.whl (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,590 Found link https://files.pythonhosted.org/packages/7b/53/d63dbeafaa50b8b31161faa261323e7d8a36792a03ac37e30ee90281b0e1/mobspy-2.2.2.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.2.2 2024-02-28T23:19:39,591 Skipping link: No binaries permitted for mobspy: https://files.pythonhosted.org/packages/58/d4/832663ae3a7361fb1f6bbc4bf23914b1f4273ce55048cd62927f7c1abe85/mobspy-2.3.0-py3-none-any.whl (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,592 Found link https://files.pythonhosted.org/packages/ad/ae/a4435812cda248f15f71510c5d0632d3da836738c2f55d07bb06f4a822fa/mobspy-2.3.0.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.3.0 2024-02-28T23:19:39,592 Skipping link: No binaries permitted for mobspy: https://files.pythonhosted.org/packages/bb/78/5ef23f1ea228b9180fcfe3bcac71482c2f99f425ee862ac97a133a1d2db9/mobspy-2.3.1-py3-none-any.whl (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,593 Found link https://files.pythonhosted.org/packages/ac/2c/2d1f028abd87f5a9bb5af86fd9d3677b11be527dd8615f872bae09882517/mobspy-2.3.1.tar.gz (from https://pypi.org/simple/mobspy/) (requires-python:>=3.6), version: 2.3.1 2024-02-28T23:19:39,594 Fetching project page and analyzing links: https://www.piwheels.org/simple/mobspy/ 2024-02-28T23:19:39,595 Getting page https://www.piwheels.org/simple/mobspy/ 2024-02-28T23:19:39,596 Found index url https://www.piwheels.org/simple/ 2024-02-28T23:19:39,765 Fetched page https://www.piwheels.org/simple/mobspy/ as text/html 2024-02-28T23:19:39,769 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-2.3.0-py3-none-any.whl#sha256=993d22161ad2a520897d05dc69fc02a715efe8cd11928478a90659b518638bc5 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,770 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-2.2.2-py3-none-any.whl#sha256=25a82b917c096ee0ffd405aa45688f10951bee3a87f043488c5bf947322576e5 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,770 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-2.0.4-py3-none-any.whl#sha256=8bc9a86f6a4ca7cf5776d50edf9260aaf33a40e2a21458011a6a59a3ef42aeea (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,771 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-2.0.3-py3-none-any.whl#sha256=3bd344d4bced113bfa0a5e273d32c2f939295cfc1d00031e51534aacbea94410 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,772 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-2.0.2-py3-none-any.whl#sha256=841b9a47734abb27e4abfd98c62bf2057765cefa42de5fdd7203f742621ed402 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,772 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-2.0.1-py3-none-any.whl#sha256=f1cdde5da49569b3e9eb9da7e66d0f986ff6435eb6582e71986642c9dee46406 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,773 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.1.3-py3-none-any.whl#sha256=f9dfd21e9baf95605b4587f404d37481d525796d74750181aaf70139e8674281 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,774 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.1.2-py3-none-any.whl#sha256=5246e3324739c05f676c64929b6c31d17b1dda6cee4f40c5329747ddbaf8e7ae (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,774 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.1-py3-none-any.whl#sha256=0e28cf39288fac5cbab2bab2cac57499959d72a8691a9d3c54bff36d6e9b6f13 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,775 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.0.5-py3-none-any.whl#sha256=67684ab1ac59298fbf59be47ad3dfb875c02ee79eceadd7a81c988a93db0fdca (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,776 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.0.4-py3-none-any.whl#sha256=558767d78ceef098c5b73b71062374668cb8c30af92ca0b1e1585933e16cedb9 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,776 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.0.3-py3-none-any.whl#sha256=ed4231baa2157854447aa2cb5e8ae3607a93ac142e9a8e4b4e439bab5f79cb43 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,777 Skipping link: No binaries permitted for mobspy: https://www.piwheels.org/simple/mobspy/mobspy-1.0.2-py3-none-any.whl#sha256=d9200e8562ac99cd9c250a3e8c2b3a6a375d2f36288ff5073d3dd14be9bbfc68 (from https://www.piwheels.org/simple/mobspy/) (requires-python:>=3.6) 2024-02-28T23:19:39,777 Skipping link: not a file: https://www.piwheels.org/simple/mobspy/ 2024-02-28T23:19:39,778 Skipping link: not a file: https://pypi.org/simple/mobspy/ 2024-02-28T23:19:39,797 Given no hashes to check 1 links for project 'mobspy': discarding no candidates 2024-02-28T23:19:39,815 Collecting mobspy==2.3.1 2024-02-28T23:19:39,818 Created temporary directory: /tmp/pip-unpack-6_yblap4 2024-02-28T23:19:40,062 Downloading mobspy-2.3.1.tar.gz (5.4 MB) 2024-02-28T23:19:42,133 Added mobspy==2.3.1 from https://files.pythonhosted.org/packages/ac/2c/2d1f028abd87f5a9bb5af86fd9d3677b11be527dd8615f872bae09882517/mobspy-2.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-jin6su5p' 2024-02-28T23:19:42,134 Running setup.py (path:/tmp/pip-wheel-nhx583qj/mobspy_afbb82e4c8c64985a1ef493f29d5cea0/setup.py) egg_info for package mobspy 2024-02-28T23:19:42,135 Created temporary directory: /tmp/pip-pip-egg-info-g9t5ql0i 2024-02-28T23:19:42,136 Preparing metadata (setup.py): started 2024-02-28T23:19:42,137 Running command python setup.py egg_info 2024-02-28T23:19:42,835 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-02-28T23:19:42,835 !! 2024-02-28T23:19:42,837 ******************************************************************************** 2024-02-28T23:19:42,837 Requirements should be satisfied by a PEP 517 installer. 2024-02-28T23:19:42,838 If you are using pip, you can try `pip install --use-pep517`. 2024-02-28T23:19:42,839 ******************************************************************************** 2024-02-28T23:19:42,840 !! 2024-02-28T23:19:42,841 dist.fetch_build_eggs(dist.setup_requires) 2024-02-28T23:19:45,925 running egg_info 2024-02-28T23:19:45,926 creating /tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info 2024-02-28T23:19:45,952 writing /tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/PKG-INFO 2024-02-28T23:19:45,956 writing dependency_links to /tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/dependency_links.txt 2024-02-28T23:19:45,958 writing requirements to /tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/requires.txt 2024-02-28T23:19:45,959 writing top-level names to /tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/top_level.txt 2024-02-28T23:19:45,960 writing manifest file '/tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/SOURCES.txt' 2024-02-28T23:19:46,130 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-28T23:19:46,136 reading manifest file '/tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/SOURCES.txt' 2024-02-28T23:19:46,138 adding license file 'LICENSE' 2024-02-28T23:19:46,141 writing manifest file '/tmp/pip-pip-egg-info-g9t5ql0i/mobspy.egg-info/SOURCES.txt' 2024-02-28T23:19:46,257 Preparing metadata (setup.py): finished with status 'done' 2024-02-28T23:19:46,261 Source in /tmp/pip-wheel-nhx583qj/mobspy_afbb82e4c8c64985a1ef493f29d5cea0 has version 2.3.1, which satisfies requirement mobspy==2.3.1 from https://files.pythonhosted.org/packages/ac/2c/2d1f028abd87f5a9bb5af86fd9d3677b11be527dd8615f872bae09882517/mobspy-2.3.1.tar.gz 2024-02-28T23:19:46,262 Removed mobspy==2.3.1 from https://files.pythonhosted.org/packages/ac/2c/2d1f028abd87f5a9bb5af86fd9d3677b11be527dd8615f872bae09882517/mobspy-2.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-jin6su5p' 2024-02-28T23:19:46,268 Created temporary directory: /tmp/pip-unpack-fjo3zv6k 2024-02-28T23:19:46,269 Created temporary directory: /tmp/pip-unpack-ddgjpy2o 2024-02-28T23:19:46,282 Building wheels for collected packages: mobspy 2024-02-28T23:19:46,286 Created temporary directory: /tmp/pip-wheel-u4c_mx0f 2024-02-28T23:19:46,286 Building wheel for mobspy (setup.py): started 2024-02-28T23:19:46,287 Destination directory: /tmp/pip-wheel-u4c_mx0f 2024-02-28T23:19:46,288 Running command python setup.py bdist_wheel 2024-02-28T23:19:46,976 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-02-28T23:19:46,976 !! 2024-02-28T23:19:46,977 ******************************************************************************** 2024-02-28T23:19:46,978 Requirements should be satisfied by a PEP 517 installer. 2024-02-28T23:19:46,978 If you are using pip, you can try `pip install --use-pep517`. 2024-02-28T23:19:46,979 ******************************************************************************** 2024-02-28T23:19:46,980 !! 2024-02-28T23:19:46,980 dist.fetch_build_eggs(dist.setup_requires) 2024-02-28T23:19:47,544 running bdist_wheel 2024-02-28T23:19:47,652 running build 2024-02-28T23:19:47,653 running build_py 2024-02-28T23:19:47,682 creating build 2024-02-28T23:19:47,682 creating build/lib 2024-02-28T23:19:47,683 creating build/lib/mobspy 2024-02-28T23:19:47,684 copying mobspy/simulation.py -> build/lib/mobspy 2024-02-28T23:19:47,687 copying mobspy/_version.py -> build/lib/mobspy 2024-02-28T23:19:47,689 copying mobspy/__init__.py -> build/lib/mobspy 2024-02-28T23:19:47,691 creating build/lib/mobspy/plot_params 2024-02-28T23:19:47,692 copying mobspy/plot_params/example_plot_reader.py -> build/lib/mobspy/plot_params 2024-02-28T23:19:47,694 copying mobspy/plot_params/default_plot_reader.py -> build/lib/mobspy/plot_params 2024-02-28T23:19:47,695 copying mobspy/plot_params/__init__.py -> build/lib/mobspy/plot_params 2024-02-28T23:19:47,697 creating build/lib/mobspy/sbml_simulator 2024-02-28T23:19:47,698 copying mobspy/sbml_simulator/SBMLWriter.py -> build/lib/mobspy/sbml_simulator 2024-02-28T23:19:47,700 copying mobspy/sbml_simulator/builder.py -> build/lib/mobspy/sbml_simulator 2024-02-28T23:19:47,702 copying mobspy/sbml_simulator/run.py -> build/lib/mobspy/sbml_simulator 2024-02-28T23:19:47,704 copying mobspy/sbml_simulator/__init__.py -> build/lib/mobspy/sbml_simulator 2024-02-28T23:19:47,706 creating build/lib/mobspy/plot_scripts 2024-02-28T23:19:47,707 copying mobspy/plot_scripts/default_plots.py -> build/lib/mobspy/plot_scripts 2024-02-28T23:19:47,709 copying mobspy/plot_scripts/statistics_calculations.py -> build/lib/mobspy/plot_scripts 2024-02-28T23:19:47,711 copying mobspy/plot_scripts/process_plot_data.py -> build/lib/mobspy/plot_scripts 2024-02-28T23:19:47,713 copying mobspy/plot_scripts/hierarchical_plot.py -> build/lib/mobspy/plot_scripts 2024-02-28T23:19:47,715 copying mobspy/plot_scripts/__init__.py -> build/lib/mobspy/plot_scripts 2024-02-28T23:19:47,717 creating build/lib/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,718 copying mobspy/parameter_estimation_data_loader/parameter_estimation_scripts.py -> build/lib/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,720 copying mobspy/parameter_estimation_data_loader/data_loader.py -> build/lib/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,722 copying mobspy/parameter_estimation_data_loader/__init__.py -> build/lib/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,724 creating build/lib/mobspy/parameters 2024-02-28T23:19:47,725 copying mobspy/parameters/example_reader.py -> build/lib/mobspy/parameters 2024-02-28T23:19:47,726 copying mobspy/parameters/default_reader.py -> build/lib/mobspy/parameters 2024-02-28T23:19:47,728 copying mobspy/parameters/__init__.py -> build/lib/mobspy/parameters 2024-02-28T23:19:47,730 creating build/lib/mobspy/modules 2024-02-28T23:19:47,731 copying mobspy/modules/logic_operator_objects.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,733 copying mobspy/modules/unit_handler.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,735 copying mobspy/modules/reaction_construction_nb.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,738 copying mobspy/modules/meta_class.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,741 copying mobspy/modules/order_operators.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,743 copying mobspy/modules/user_functions.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,745 copying mobspy/modules/function_rate_code.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,748 copying mobspy/modules/event_functions.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,750 copying mobspy/modules/meta_class_utils.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,752 copying mobspy/modules/mobspy_parameters.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,754 copying mobspy/modules/mobspy_expressions.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,757 copying mobspy/modules/reaction_construction_nb_parallel.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,759 copying mobspy/modules/species_string_generator.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,761 copying mobspy/modules/class_of_meta_specie_named_any.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,763 copying mobspy/modules/set_counts_module.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,765 copying mobspy/modules/__init__.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,767 copying mobspy/modules/context_related_scripts.py -> build/lib/mobspy/modules 2024-02-28T23:19:47,769 creating build/lib/mobspy/data_handler 2024-02-28T23:19:47,770 copying mobspy/data_handler/process_result_data.py -> build/lib/mobspy/data_handler 2024-02-28T23:19:47,772 copying mobspy/data_handler/time_series_object.py -> build/lib/mobspy/data_handler 2024-02-28T23:19:47,774 copying mobspy/data_handler/__init__.py -> build/lib/mobspy/data_handler 2024-02-28T23:19:47,776 creating build/lib/mobspy/parameter_scripts 2024-02-28T23:19:47,777 copying mobspy/parameter_scripts/parametric_sweeps.py -> build/lib/mobspy/parameter_scripts 2024-02-28T23:19:47,779 copying mobspy/parameter_scripts/parameter_reader.py -> build/lib/mobspy/parameter_scripts 2024-02-28T23:19:47,781 copying mobspy/parameter_scripts/__init__.py -> build/lib/mobspy/parameter_scripts 2024-02-28T23:19:47,783 creating build/lib/mobspy/simulation_logging 2024-02-28T23:19:47,784 copying mobspy/simulation_logging/log_scripts.py -> build/lib/mobspy/simulation_logging 2024-02-28T23:19:47,785 copying mobspy/simulation_logging/__init__.py -> build/lib/mobspy/simulation_logging 2024-02-28T23:19:47,823 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-02-28T23:19:47,823 !! 2024-02-28T23:19:47,824 ******************************************************************************** 2024-02-28T23:19:47,825 Please avoid running ``setup.py`` directly. 2024-02-28T23:19:47,826 Instead, use pypa/build, pypa/installer or other 2024-02-28T23:19:47,826 standards-based tools. 2024-02-28T23:19:47,827 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-02-28T23:19:47,828 ******************************************************************************** 2024-02-28T23:19:47,829 !! 2024-02-28T23:19:47,830 self.initialize_options() 2024-02-28T23:19:47,851 installing to build/bdist.linux-armv7l/wheel 2024-02-28T23:19:47,852 running install 2024-02-28T23:19:47,876 running install_lib 2024-02-28T23:19:47,903 creating build/bdist.linux-armv7l 2024-02-28T23:19:47,903 creating build/bdist.linux-armv7l/wheel 2024-02-28T23:19:47,905 creating build/bdist.linux-armv7l/wheel/mobspy 2024-02-28T23:19:47,906 creating build/bdist.linux-armv7l/wheel/mobspy/plot_params 2024-02-28T23:19:47,907 copying build/lib/mobspy/plot_params/example_plot_reader.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_params 2024-02-28T23:19:47,909 copying build/lib/mobspy/plot_params/default_plot_reader.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_params 2024-02-28T23:19:47,910 copying build/lib/mobspy/plot_params/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_params 2024-02-28T23:19:47,912 creating build/bdist.linux-armv7l/wheel/mobspy/sbml_simulator 2024-02-28T23:19:47,913 copying build/lib/mobspy/sbml_simulator/SBMLWriter.py -> build/bdist.linux-armv7l/wheel/mobspy/sbml_simulator 2024-02-28T23:19:47,915 copying build/lib/mobspy/sbml_simulator/builder.py -> build/bdist.linux-armv7l/wheel/mobspy/sbml_simulator 2024-02-28T23:19:47,916 copying build/lib/mobspy/sbml_simulator/run.py -> build/bdist.linux-armv7l/wheel/mobspy/sbml_simulator 2024-02-28T23:19:47,919 copying build/lib/mobspy/sbml_simulator/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/sbml_simulator 2024-02-28T23:19:47,920 copying build/lib/mobspy/simulation.py -> build/bdist.linux-armv7l/wheel/mobspy 2024-02-28T23:19:47,923 creating build/bdist.linux-armv7l/wheel/mobspy/plot_scripts 2024-02-28T23:19:47,924 copying build/lib/mobspy/plot_scripts/default_plots.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_scripts 2024-02-28T23:19:47,926 copying build/lib/mobspy/plot_scripts/statistics_calculations.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_scripts 2024-02-28T23:19:47,928 copying build/lib/mobspy/plot_scripts/process_plot_data.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_scripts 2024-02-28T23:19:47,930 copying build/lib/mobspy/plot_scripts/hierarchical_plot.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_scripts 2024-02-28T23:19:47,932 copying build/lib/mobspy/plot_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/plot_scripts 2024-02-28T23:19:47,934 creating build/bdist.linux-armv7l/wheel/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,935 copying build/lib/mobspy/parameter_estimation_data_loader/parameter_estimation_scripts.py -> build/bdist.linux-armv7l/wheel/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,938 copying build/lib/mobspy/parameter_estimation_data_loader/data_loader.py -> build/bdist.linux-armv7l/wheel/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,939 copying build/lib/mobspy/parameter_estimation_data_loader/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/parameter_estimation_data_loader 2024-02-28T23:19:47,941 copying build/lib/mobspy/_version.py -> build/bdist.linux-armv7l/wheel/mobspy 2024-02-28T23:19:47,943 creating build/bdist.linux-armv7l/wheel/mobspy/parameters 2024-02-28T23:19:47,944 copying build/lib/mobspy/parameters/example_reader.py -> build/bdist.linux-armv7l/wheel/mobspy/parameters 2024-02-28T23:19:47,946 copying build/lib/mobspy/parameters/default_reader.py -> build/bdist.linux-armv7l/wheel/mobspy/parameters 2024-02-28T23:19:47,947 copying build/lib/mobspy/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/parameters 2024-02-28T23:19:47,949 creating build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,950 copying build/lib/mobspy/modules/logic_operator_objects.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,953 copying build/lib/mobspy/modules/unit_handler.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,956 copying build/lib/mobspy/modules/reaction_construction_nb.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,958 copying build/lib/mobspy/modules/meta_class.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,962 copying build/lib/mobspy/modules/order_operators.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,965 copying build/lib/mobspy/modules/user_functions.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,966 copying build/lib/mobspy/modules/function_rate_code.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,969 copying build/lib/mobspy/modules/event_functions.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,971 copying build/lib/mobspy/modules/meta_class_utils.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,973 copying build/lib/mobspy/modules/mobspy_parameters.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,975 copying build/lib/mobspy/modules/mobspy_expressions.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,978 copying build/lib/mobspy/modules/reaction_construction_nb_parallel.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,981 copying build/lib/mobspy/modules/species_string_generator.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,983 copying build/lib/mobspy/modules/class_of_meta_specie_named_any.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,985 copying build/lib/mobspy/modules/set_counts_module.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,987 copying build/lib/mobspy/modules/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,989 copying build/lib/mobspy/modules/context_related_scripts.py -> build/bdist.linux-armv7l/wheel/mobspy/modules 2024-02-28T23:19:47,991 creating build/bdist.linux-armv7l/wheel/mobspy/data_handler 2024-02-28T23:19:47,992 copying build/lib/mobspy/data_handler/process_result_data.py -> build/bdist.linux-armv7l/wheel/mobspy/data_handler 2024-02-28T23:19:47,994 copying build/lib/mobspy/data_handler/time_series_object.py -> build/bdist.linux-armv7l/wheel/mobspy/data_handler 2024-02-28T23:19:47,997 copying build/lib/mobspy/data_handler/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/data_handler 2024-02-28T23:19:47,999 creating build/bdist.linux-armv7l/wheel/mobspy/parameter_scripts 2024-02-28T23:19:48,000 copying build/lib/mobspy/parameter_scripts/parametric_sweeps.py -> build/bdist.linux-armv7l/wheel/mobspy/parameter_scripts 2024-02-28T23:19:48,001 copying build/lib/mobspy/parameter_scripts/parameter_reader.py -> build/bdist.linux-armv7l/wheel/mobspy/parameter_scripts 2024-02-28T23:19:48,004 copying build/lib/mobspy/parameter_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/parameter_scripts 2024-02-28T23:19:48,005 copying build/lib/mobspy/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy 2024-02-28T23:19:48,007 creating build/bdist.linux-armv7l/wheel/mobspy/simulation_logging 2024-02-28T23:19:48,008 copying build/lib/mobspy/simulation_logging/log_scripts.py -> build/bdist.linux-armv7l/wheel/mobspy/simulation_logging 2024-02-28T23:19:48,010 copying build/lib/mobspy/simulation_logging/__init__.py -> build/bdist.linux-armv7l/wheel/mobspy/simulation_logging 2024-02-28T23:19:48,012 running install_egg_info 2024-02-28T23:19:48,066 running egg_info 2024-02-28T23:19:48,092 writing mobspy.egg-info/PKG-INFO 2024-02-28T23:19:48,095 writing dependency_links to mobspy.egg-info/dependency_links.txt 2024-02-28T23:19:48,097 writing requirements to mobspy.egg-info/requires.txt 2024-02-28T23:19:48,098 writing top-level names to mobspy.egg-info/top_level.txt 2024-02-28T23:19:48,195 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-02-28T23:19:48,198 reading manifest file 'mobspy.egg-info/SOURCES.txt' 2024-02-28T23:19:48,255 adding license file 'LICENSE' 2024-02-28T23:19:48,269 writing manifest file 'mobspy.egg-info/SOURCES.txt' 2024-02-28T23:19:48,271 Copying mobspy.egg-info to build/bdist.linux-armv7l/wheel/mobspy-2.3.1-py3.11.egg-info 2024-02-28T23:19:48,282 running install_scripts 2024-02-28T23:19:48,296 creating build/bdist.linux-armv7l/wheel/mobspy-2.3.1.dist-info/WHEEL 2024-02-28T23:19:48,298 creating '/tmp/pip-wheel-u4c_mx0f/mobspy-2.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-02-28T23:19:48,301 adding 'mobspy/__init__.py' 2024-02-28T23:19:48,302 adding 'mobspy/_version.py' 2024-02-28T23:19:48,306 adding 'mobspy/simulation.py' 2024-02-28T23:19:48,309 adding 'mobspy/data_handler/__init__.py' 2024-02-28T23:19:48,310 adding 'mobspy/data_handler/process_result_data.py' 2024-02-28T23:19:48,312 adding 'mobspy/data_handler/time_series_object.py' 2024-02-28T23:19:48,314 adding 'mobspy/modules/__init__.py' 2024-02-28T23:19:48,315 adding 'mobspy/modules/class_of_meta_specie_named_any.py' 2024-02-28T23:19:48,317 adding 'mobspy/modules/context_related_scripts.py' 2024-02-28T23:19:48,318 adding 'mobspy/modules/event_functions.py' 2024-02-28T23:19:48,320 adding 'mobspy/modules/function_rate_code.py' 2024-02-28T23:19:48,322 adding 'mobspy/modules/logic_operator_objects.py' 2024-02-28T23:19:48,330 adding 'mobspy/modules/meta_class.py' 2024-02-28T23:19:48,332 adding 'mobspy/modules/meta_class_utils.py' 2024-02-28T23:19:48,336 adding 'mobspy/modules/mobspy_expressions.py' 2024-02-28T23:19:48,337 adding 'mobspy/modules/mobspy_parameters.py' 2024-02-28T23:19:48,339 adding 'mobspy/modules/order_operators.py' 2024-02-28T23:19:48,342 adding 'mobspy/modules/reaction_construction_nb.py' 2024-02-28T23:19:48,344 adding 'mobspy/modules/reaction_construction_nb_parallel.py' 2024-02-28T23:19:48,345 adding 'mobspy/modules/set_counts_module.py' 2024-02-28T23:19:48,347 adding 'mobspy/modules/species_string_generator.py' 2024-02-28T23:19:48,348 adding 'mobspy/modules/unit_handler.py' 2024-02-28T23:19:48,349 adding 'mobspy/modules/user_functions.py' 2024-02-28T23:19:48,351 adding 'mobspy/parameter_estimation_data_loader/__init__.py' 2024-02-28T23:19:48,352 adding 'mobspy/parameter_estimation_data_loader/data_loader.py' 2024-02-28T23:19:48,354 adding 'mobspy/parameter_estimation_data_loader/parameter_estimation_scripts.py' 2024-02-28T23:19:48,356 adding 'mobspy/parameter_scripts/__init__.py' 2024-02-28T23:19:48,357 adding 'mobspy/parameter_scripts/parameter_reader.py' 2024-02-28T23:19:48,359 adding 'mobspy/parameter_scripts/parametric_sweeps.py' 2024-02-28T23:19:48,360 adding 'mobspy/parameters/__init__.py' 2024-02-28T23:19:48,364 adding 'mobspy/parameters/default_reader.py' 2024-02-28T23:19:48,366 adding 'mobspy/parameters/example_reader.py' 2024-02-28T23:19:48,367 adding 'mobspy/plot_params/__init__.py' 2024-02-28T23:19:48,368 adding 'mobspy/plot_params/default_plot_reader.py' 2024-02-28T23:19:48,370 adding 'mobspy/plot_params/example_plot_reader.py' 2024-02-28T23:19:48,371 adding 'mobspy/plot_scripts/__init__.py' 2024-02-28T23:19:48,373 adding 'mobspy/plot_scripts/default_plots.py' 2024-02-28T23:19:48,375 adding 'mobspy/plot_scripts/hierarchical_plot.py' 2024-02-28T23:19:48,377 adding 'mobspy/plot_scripts/process_plot_data.py' 2024-02-28T23:19:48,378 adding 'mobspy/plot_scripts/statistics_calculations.py' 2024-02-28T23:19:48,381 adding 'mobspy/sbml_simulator/SBMLWriter.py' 2024-02-28T23:19:48,382 adding 'mobspy/sbml_simulator/__init__.py' 2024-02-28T23:19:48,383 adding 'mobspy/sbml_simulator/builder.py' 2024-02-28T23:19:48,385 adding 'mobspy/sbml_simulator/run.py' 2024-02-28T23:19:48,387 adding 'mobspy/simulation_logging/__init__.py' 2024-02-28T23:19:48,388 adding 'mobspy/simulation_logging/log_scripts.py' 2024-02-28T23:19:48,390 adding 'mobspy-2.3.1.dist-info/LICENSE' 2024-02-28T23:19:48,391 adding 'mobspy-2.3.1.dist-info/METADATA' 2024-02-28T23:19:48,393 adding 'mobspy-2.3.1.dist-info/WHEEL' 2024-02-28T23:19:48,393 adding 'mobspy-2.3.1.dist-info/top_level.txt' 2024-02-28T23:19:48,395 adding 'mobspy-2.3.1.dist-info/RECORD' 2024-02-28T23:19:48,398 removing build/bdist.linux-armv7l/wheel 2024-02-28T23:19:48,529 Building wheel for mobspy (setup.py): finished with status 'done' 2024-02-28T23:19:48,532 Created wheel for mobspy: filename=mobspy-2.3.1-py3-none-any.whl size=95622 sha256=93adf274518c44e6b998213d3747cec60877704ed3dc4ed118eb8b5a6ccc8a5e 2024-02-28T23:19:48,533 Stored in directory: /tmp/pip-ephem-wheel-cache-5m2s1nzr/wheels/d1/1a/ef/4db2b2eba1f9c0287cf0c0aba2de616b3c4ac8aa15a3b17def 2024-02-28T23:19:48,545 Successfully built mobspy 2024-02-28T23:19:48,550 Removed build tracker: '/tmp/pip-build-tracker-jin6su5p'