2024-03-01T00:26:35,756 Created temporary directory: /tmp/pip-build-tracker-0c08n2jg
2024-03-01T00:26:35,757 Initialized build tracking at /tmp/pip-build-tracker-0c08n2jg
2024-03-01T00:26:35,758 Created build tracker: /tmp/pip-build-tracker-0c08n2jg
2024-03-01T00:26:35,758 Entered build tracker: /tmp/pip-build-tracker-0c08n2jg
2024-03-01T00:26:35,758 Created temporary directory: /tmp/pip-wheel-xlkcusu7
2024-03-01T00:26:35,763 Created temporary directory: /tmp/pip-ephem-wheel-cache-sofalcxq
2024-03-01T00:26:35,787 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T00:26:35,791 2 location(s) to search for versions of cyto-dl:
2024-03-01T00:26:35,791 * https://pypi.org/simple/cyto-dl/
2024-03-01T00:26:35,791 * https://www.piwheels.org/simple/cyto-dl/
2024-03-01T00:26:35,791 Fetching project page and analyzing links: https://pypi.org/simple/cyto-dl/
2024-03-01T00:26:35,792 Getting page https://pypi.org/simple/cyto-dl/
2024-03-01T00:26:35,793 Found index url https://pypi.org/simple/
2024-03-01T00:26:35,847 Fetched page https://pypi.org/simple/cyto-dl/ as application/vnd.pypi.simple.v1+json
2024-03-01T00:26:35,850   Found link https://files.pythonhosted.org/packages/2d/ce/accc274a32bba2bda7f6a3b571cff3b352bc9f7265f3979fe2a6071202e6/cyto-dl-0.0.0.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.0.0
2024-03-01T00:26:35,850   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/46/b8/ef1396afb31a4f6f93d4869eb1ed5b8a382e03097e04c4f68b7d25bac065/cyto_dl-0.0.0-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:35,851   Found link https://files.pythonhosted.org/packages/db/c5/688b199e1350569abdd876695638911f72459fe519569239732db1f79cf2/cyto-dl-0.1.0.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.0
2024-03-01T00:26:35,851   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d3/a6/648b05e442881231d2207f7ab0d5e772aec94ce137d76f927428f7734627/cyto_dl-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:35,852   Found link https://files.pythonhosted.org/packages/c8/c3/a44ad991459e7e360db17bf9d396b7ca1efae05c895ab9111611cf95e81a/cyto-dl-0.1.1.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.1
2024-03-01T00:26:35,852   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/cf/53/b1e709e2e304aa5af43e18e6ffd60d52dc6f7a251d75369b527912224b0f/cyto_dl-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:35,853   Found link https://files.pythonhosted.org/packages/b1/98/cef1b3548480d3313c7eec14db9a058aac7278599f4149b96dfd52269c5c/cyto-dl-0.1.2.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.2
2024-03-01T00:26:35,853   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/5b/76/e5e59b3ee40d33f85df42bc12743199778a27981c454c528476d8c19e92c/cyto_dl-0.1.2-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:35,854   Found link https://files.pythonhosted.org/packages/1b/60/cbf2eb74445c8456cec413d0e9e2bb8b7122a7ce455a9db9429c4bbcbbc7/cyto-dl-0.1.3.tar.gz (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11), version: 0.1.3
2024-03-01T00:26:35,854   Skipping link: No binaries permitted for cyto-dl: https://files.pythonhosted.org/packages/d6/64/ba89cde2d20bd4c6442eda800703c8e74927f37738f70420221e9b19ce22/cyto_dl-0.1.3-py3-none-any.whl (from https://pypi.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:35,854 Fetching project page and analyzing links: https://www.piwheels.org/simple/cyto-dl/
2024-03-01T00:26:35,855 Getting page https://www.piwheels.org/simple/cyto-dl/
2024-03-01T00:26:35,856 Found index url https://www.piwheels.org/simple/
2024-03-01T00:26:40,338 Fetched page https://www.piwheels.org/simple/cyto-dl/ as text/html
2024-03-01T00:26:40,344   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.2-py3-none-any.whl#sha256=4bbf20900a3b936ae82371fa2092a0167cfc89fd98ed75f940aa86e49cbc0fc3 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:40,344   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.1-py3-none-any.whl#sha256=36e7c3552a2418bbd9d3527bf01ec6023becd6bd7c3b6d56a46af04ae942fec1 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:40,345   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.1.0-py3-none-any.whl#sha256=7a5e6812050531fde61abdeffd59516819eeb4a6390cdab7ff992200bc2ea3d5 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:40,345   Skipping link: No binaries permitted for cyto-dl: https://www.piwheels.org/simple/cyto-dl/cyto_dl-0.0.0-py3-none-any.whl#sha256=e2d1c34bc6519ebedf101f589a6e562dac3b2b5a6cc2d61c4f38dc6432bd7695 (from https://www.piwheels.org/simple/cyto-dl/) (requires-python:>=3.8,<3.11)
2024-03-01T00:26:40,346 Skipping link: not a file: https://www.piwheels.org/simple/cyto-dl/
2024-03-01T00:26:40,346 Skipping link: not a file: https://pypi.org/simple/cyto-dl/
2024-03-01T00:26:40,385 Given no hashes to check 1 links for project 'cyto-dl': discarding no candidates
2024-03-01T00:26:40,410 Collecting cyto-dl==0.1.3
2024-03-01T00:26:40,412   Created temporary directory: /tmp/pip-unpack-fulxq1ds
2024-03-01T00:26:40,728   Downloading cyto-dl-0.1.3.tar.gz (398 kB)
2024-03-01T00:26:41,306   Added cyto-dl==0.1.3 from https://files.pythonhosted.org/packages/1b/60/cbf2eb74445c8456cec413d0e9e2bb8b7122a7ce455a9db9429c4bbcbbc7/cyto-dl-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-0c08n2jg'
2024-03-01T00:26:41,313   Created temporary directory: /tmp/pip-build-env-a71zr8d5
2024-03-01T00:26:41,323   Installing build dependencies: started
2024-03-01T00:26:41,324   Running command pip subprocess to install build dependencies
2024-03-01T00:26:42,482   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-03-01T00:26:43,019   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T00:26:46,114   Collecting pdm-pep517>=1.0.0
2024-03-01T00:26:48,148     Using cached https://www.piwheels.org/simple/pdm-pep517/pdm_pep517-1.1.4-py3-none-any.whl (216 kB)
2024-03-01T00:26:51,427   Collecting numpy>=1.23.5
2024-03-01T00:26:54,046     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-03-01T00:26:55,792   Installing collected packages: pdm-pep517, numpy
2024-03-01T00:27:04,678     Creating /tmp/pip-build-env-a71zr8d5/overlay/bin
2024-03-01T00:27:04,680     changing mode of /tmp/pip-build-env-a71zr8d5/overlay/bin/f2py to 755
2024-03-01T00:27:04,714   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2024-03-01T00:27:04,714   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.4 which is incompatible.
2024-03-01T00:27:04,715   Successfully installed numpy-1.26.4 pdm-pep517-1.1.4

2024-03-01T00:27:04,905   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-03-01T00:27:04,905   [notice] To update, run: python3 -m pip install --upgrade pip
2024-03-01T00:27:05,198   Installing build dependencies: finished with status 'done'
2024-03-01T00:27:05,204   Getting requirements to build wheel: started
2024-03-01T00:27:05,205   Running command Getting requirements to build wheel
2024-03-01T00:27:05,688   Getting requirements to build wheel: finished with status 'done'
2024-03-01T00:27:05,692   Created temporary directory: /tmp/pip-modern-metadata-2lrz0a12
2024-03-01T00:27:05,695   Preparing metadata (pyproject.toml): started
2024-03-01T00:27:05,696   Running command Preparing metadata (pyproject.toml)
2024-03-01T00:27:06,126   /tmp/pip-build-env-a71zr8d5/overlay/lib/python3.9/site-packages/pdm/pep517/base.py:384: PDMWarning: 'license' is missing
2024-03-01T00:27:06,127     if meta.license_expression:
2024-03-01T00:27:06,167   /tmp/pip-build-env-a71zr8d5/overlay/lib/python3.9/site-packages/pdm/pep517/api.py:51: PDMWarning: No license files are matched with glob patterns ['LICENSES/*', 'LICEN[CS]E*', 'COPYING*', 'NOTICE*', 'AUTHORS*'].
2024-03-01T00:27:06,167     for license_file in builder.find_license_files():
2024-03-01T00:27:06,204   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-01T00:27:06,211   Source in /tmp/pip-wheel-xlkcusu7/cyto-dl_bed7a8338ccc4362b0cf3fcf2d9f69ce has version 0.1.3, which satisfies requirement cyto-dl==0.1.3 from https://files.pythonhosted.org/packages/1b/60/cbf2eb74445c8456cec413d0e9e2bb8b7122a7ce455a9db9429c4bbcbbc7/cyto-dl-0.1.3.tar.gz
2024-03-01T00:27:06,212   Removed cyto-dl==0.1.3 from https://files.pythonhosted.org/packages/1b/60/cbf2eb74445c8456cec413d0e9e2bb8b7122a7ce455a9db9429c4bbcbbc7/cyto-dl-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-0c08n2jg'
2024-03-01T00:27:06,219 Created temporary directory: /tmp/pip-unpack-bkmhvq2c
2024-03-01T00:27:06,220 Created temporary directory: /tmp/pip-unpack-jc_m1ule
2024-03-01T00:27:06,351 Building wheels for collected packages: cyto-dl
2024-03-01T00:27:06,355   Created temporary directory: /tmp/pip-wheel-se9ymbjk
2024-03-01T00:27:06,356   Destination directory: /tmp/pip-wheel-se9ymbjk
2024-03-01T00:27:06,358   Building wheel for cyto-dl (pyproject.toml): started
2024-03-01T00:27:06,359   Running command Building wheel for cyto-dl (pyproject.toml)
2024-03-01T00:27:06,955    - Adding README.md
2024-03-01T00:27:06,956    - Adding configs/callbacks/default.yaml
2024-03-01T00:27:06,956    - Adding configs/callbacks/early_stopping.yaml
2024-03-01T00:27:06,956    - Adding configs/callbacks/layer_freeze.yaml
2024-03-01T00:27:06,956    - Adding configs/callbacks/learning_rate_monitor.yaml
2024-03-01T00:27:06,956    - Adding configs/callbacks/model_checkpoint.yaml
2024-03-01T00:27:06,956    - Adding configs/callbacks/model_summary.yaml
2024-03-01T00:27:06,957    - Adding configs/callbacks/none.yaml
2024-03-01T00:27:06,957    - Adding configs/callbacks/outlier_detection.yaml
2024-03-01T00:27:06,957    - Adding configs/callbacks/rich_progress_bar.yaml
2024-03-01T00:27:06,957    - Adding configs/compile.yaml
2024-03-01T00:27:06,957    - Adding configs/data/classification/single_timepoint.yaml
2024-03-01T00:27:06,957    - Adding configs/data/im2im/gan.yaml
2024-03-01T00:27:06,957    - Adding configs/data/im2im/gan_superres.yaml
2024-03-01T00:27:06,957    - Adding configs/data/im2im/instance_seg.yaml
2024-03-01T00:27:06,957    - Adding configs/data/im2im/labelfree.yaml
2024-03-01T00:27:06,958    - Adding configs/data/im2im/mae.yaml
2024-03-01T00:27:06,958    - Adding configs/data/im2im/segmentation.yaml
2024-03-01T00:27:06,958    - Adding configs/data/im2im/segmentation_plugin.yaml
2024-03-01T00:27:06,958    - Adding configs/data/im2im/segmentation_superres.yaml
2024-03-01T00:27:06,958    - Adding configs/data/private/lattice_nuc_sdf.yaml
2024-03-01T00:27:06,958    - Adding configs/data/private/rot_mnist.yaml
2024-03-01T00:27:06,958    - Adding configs/data/private/rot_mnist_vae.yaml
2024-03-01T00:27:06,958    - Adding configs/data/private/rotated_mnist.yaml
2024-03-01T00:27:06,958    - Adding configs/data/private/variance_3d.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_3d_npm1.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_3d_npm_nuc_v2.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_3d_rotate.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_centerslice.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_centerslice_resize.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_npm1.yaml
2024-03-01T00:27:06,959    - Adding configs/data/private/variance_spharm.yaml
2024-03-01T00:27:06,960    - Adding configs/data/test/alternating_batch.yaml
2024-03-01T00:27:06,960    - Adding configs/data/test/omnipose.yaml
2024-03-01T00:27:06,960    - Adding configs/data/test/segmentation.yaml
2024-03-01T00:27:06,960    - Adding configs/debug/default.yaml
2024-03-01T00:27:06,960    - Adding configs/debug/fdr.yaml
2024-03-01T00:27:06,960    - Adding configs/debug/limit.yaml
2024-03-01T00:27:06,960    - Adding configs/debug/overfit.yaml
2024-03-01T00:27:06,961    - Adding configs/debug/profiler.yaml
2024-03-01T00:27:06,961    - Adding configs/eval.yaml
2024-03-01T00:27:06,961    - Adding configs/experiment/classification/per_timepoint.yaml
2024-03-01T00:27:06,961    - Adding configs/experiment/im2im/gan.yaml
2024-03-01T00:27:06,961    - Adding configs/experiment/im2im/gan_superres.yaml
2024-03-01T00:27:06,961    - Adding configs/experiment/im2im/instance_seg.yaml
2024-03-01T00:27:06,961    - Adding configs/experiment/im2im/labelfree.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/im2im/mae.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/im2im/segmentation.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/im2im/segmentation_plugin.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/im2im/segmentation_superres.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/im2im/vit_segmentation.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/private/lattice_nuc_sdf.yaml
2024-03-01T00:27:06,962    - Adding configs/experiment/private/mnist_so2.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_classical_3d_vae.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_classical_scale_inv.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_equiv_3d_vae_3dnucalign.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_scale_inv_canon_so3.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_so2.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_so2_scale_inv.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_so3_scale_inv.yaml
2024-03-01T00:27:06,963    - Adding configs/experiment/private/npm1_so3_vae.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/npm1_so3_vae_seg.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/variance_classical_2d_vae.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/variance_classical_3d_vae.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/variance_so2_3d_vae.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/variance_so2_3d_vae_profiling.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/variance_spharm.yaml
2024-03-01T00:27:06,964    - Adding configs/experiment/private/variance_spharm_o2.yaml
2024-03-01T00:27:06,964    - Adding configs/extras/default.yaml
2024-03-01T00:27:06,965    - Adding configs/hparams_search/mnist_optuna.yaml
2024-03-01T00:27:06,965    - Adding configs/hydra/default.yaml
2024-03-01T00:27:06,965    - Adding configs/logger/comet.yaml
2024-03-01T00:27:06,965    - Adding configs/logger/csv.yaml
2024-03-01T00:27:06,965    - Adding configs/logger/many_loggers.yaml
2024-03-01T00:27:06,965    - Adding configs/logger/mlflow.yaml
2024-03-01T00:27:06,965    - Adding configs/logger/neptune.yaml
2024-03-01T00:27:06,965    - Adding configs/logger/tensorboard.yaml
2024-03-01T00:27:06,966    - Adding configs/logger/wandb.yaml
2024-03-01T00:27:06,966    - Adding configs/model/classification/single_timepoint.yaml
2024-03-01T00:27:06,966    - Adding configs/model/im2im/gan.yaml
2024-03-01T00:27:06,966    - Adding configs/model/im2im/gan_superres.yaml
2024-03-01T00:27:06,966    - Adding configs/model/im2im/instance_seg.yaml
2024-03-01T00:27:06,966    - Adding configs/model/im2im/labelfree.yaml
2024-03-01T00:27:06,966    - Adding configs/model/im2im/mae.yaml
2024-03-01T00:27:06,966    - Adding configs/model/im2im/segmentation.yaml
2024-03-01T00:27:06,967    - Adding configs/model/im2im/segmentation_plugin.yaml
2024-03-01T00:27:06,967    - Adding configs/model/im2im/segmentation_superres.yaml
2024-03-01T00:27:06,967    - Adding configs/model/im2im/vit_segmentation_decoder.yaml
2024-03-01T00:27:06,967    - Adding configs/model/private/classical_image_ae.yaml
2024-03-01T00:27:06,967    - Adding configs/model/private/classical_image_vae.yaml
2024-03-01T00:27:06,967    - Adding configs/model/private/reconstruction_loss/spharm_gaussian.yaml
2024-03-01T00:27:06,967    - Adding configs/model/private/reconstruction_loss/spharm_loss.yaml
2024-03-01T00:27:06,968    - Adding configs/model/private/reconstruction_loss/spharm_mse.yaml
2024-03-01T00:27:06,968    - Adding configs/model/private/reconstruction_loss/spharm_weighted_mse.yaml
2024-03-01T00:27:06,968    - Adding configs/model/private/so3_canon_image_vae.yaml
2024-03-01T00:27:06,968    - Adding configs/model/private/so3_equiv_image_vae.yaml
2024-03-01T00:27:06,968    - Adding configs/model/private/spharm.yaml
2024-03-01T00:27:06,968    - Adding configs/model/private/spharm_so2.yaml
2024-03-01T00:27:06,968    - Adding configs/model/test/base.yaml
2024-03-01T00:27:06,968    - Adding configs/model/test/simple_segmentation.yaml
2024-03-01T00:27:06,969    - Adding configs/paths/default.yaml
2024-03-01T00:27:06,969    - Adding configs/train.yaml
2024-03-01T00:27:06,969    - Adding configs/trainer/cpu.yaml
2024-03-01T00:27:06,969    - Adding configs/trainer/ddp.yaml
2024-03-01T00:27:06,969    - Adding configs/trainer/ddp_sim.yaml
2024-03-01T00:27:06,969    - Adding configs/trainer/default.yaml
2024-03-01T00:27:06,969    - Adding configs/trainer/gpu.yaml
2024-03-01T00:27:06,969    - Adding configs/trainer/mps.yaml
2024-03-01T00:27:06,970    - Adding cyto_dl/__init__.py
2024-03-01T00:27:06,970    - Adding cyto_dl/api/__init__.py
2024-03-01T00:27:06,970    - Adding cyto_dl/api/model.py
2024-03-01T00:27:06,970    - Adding cyto_dl/callbacks/__init__.py
2024-03-01T00:27:06,970    - Adding cyto_dl/callbacks/callback_utils.py
2024-03-01T00:27:06,970    - Adding cyto_dl/callbacks/latent_walk.py
2024-03-01T00:27:06,970    - Adding cyto_dl/callbacks/layer_freeze.py
2024-03-01T00:27:06,970    - Adding cyto_dl/callbacks/model_utils.py
2024-03-01T00:27:06,971    - Adding cyto_dl/callbacks/outlier_detection.py
2024-03-01T00:27:06,971    - Adding cyto_dl/compile.py
2024-03-01T00:27:06,971    - Adding cyto_dl/dataframe/__init__.py
2024-03-01T00:27:06,971    - Adding cyto_dl/dataframe/readers.py
2024-03-01T00:27:06,971    - Adding cyto_dl/dataframe/transforms/__init__.py
2024-03-01T00:27:06,971    - Adding cyto_dl/dataframe/transforms/filter.py
2024-03-01T00:27:06,971    - Adding cyto_dl/dataframe/transforms/group_cols.py
2024-03-01T00:27:06,971    - Adding cyto_dl/dataframe/transforms/misc.py
2024-03-01T00:27:06,972    - Adding cyto_dl/dataframe/transforms/split.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/__init__.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/czi.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/data_dict.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/dataframe/__init__.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/dataframe/dataframe_datamodule.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/dataframe/grouped_dataframe_datamodule.py
2024-03-01T00:27:06,972    - Adding cyto_dl/datamodules/dataframe/utils.py
2024-03-01T00:27:06,973    - Adding cyto_dl/datamodules/folder.py
2024-03-01T00:27:06,973    - Adding cyto_dl/datamodules/smartcache.py
2024-03-01T00:27:06,973    - Adding cyto_dl/datamodules/torchvision.py
2024-03-01T00:27:06,973    - Adding cyto_dl/eval.py
2024-03-01T00:27:06,973    - Adding cyto_dl/image/__init__.py
2024-03-01T00:27:06,973    - Adding cyto_dl/image/io/__init__.py
2024-03-01T00:27:06,973    - Adding cyto_dl/image/io/aicsimage_loader.py
2024-03-01T00:27:06,973    - Adding cyto_dl/image/io/monai_bio_reader.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/io/numpy_reader.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/io/ome_zarr_reader.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/io/polygon_loader.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/io/skimage_reader.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/transforms/__init__.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/transforms/bright_sampler.py
2024-03-01T00:27:06,974    - Adding cyto_dl/image/transforms/clip.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/contrastadjust.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/merge.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/multiscale_cropper.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/pad.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/project.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/rotation_mask_transform.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/save.py
2024-03-01T00:27:06,975    - Adding cyto_dl/image/transforms/so2_random_rotation.py
2024-03-01T00:27:06,976    - Adding cyto_dl/image/transforms/track_transforms.py
2024-03-01T00:27:06,976    - Adding cyto_dl/loggers/__init__.py
2024-03-01T00:27:06,976    - Adding cyto_dl/loggers/mlflow.py
2024-03-01T00:27:06,976    - Adding cyto_dl/models/__init__.py
2024-03-01T00:27:06,976    - Adding cyto_dl/models/base_model.py
2024-03-01T00:27:06,976    - Adding cyto_dl/models/basic_model.py
2024-03-01T00:27:06,976    - Adding cyto_dl/models/classification/__init__.py
2024-03-01T00:27:06,976    - Adding cyto_dl/models/classification/classification.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/classification/timepoint_classification.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/handlers/__init__.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/handlers/base_handler.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/handlers/image_handler.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/handlers/load_image_patch.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/im2im/__init__.py
2024-03-01T00:27:06,977    - Adding cyto_dl/models/im2im/gan.py
2024-03-01T00:27:07,256    - Adding cyto_dl/models/im2im/multi_task.py
2024-03-01T00:27:07,256    - Adding cyto_dl/models/im2im/utils/__init__.py
2024-03-01T00:27:07,256    - Adding cyto_dl/models/im2im/utils/instance_seg.py
2024-03-01T00:27:07,257    - Adding cyto_dl/models/im2im/utils/noise_annealer.py
2024-03-01T00:27:07,257    - Adding cyto_dl/models/im2im/utils/postprocessing/__init__.py
2024-03-01T00:27:07,257    - Adding cyto_dl/models/im2im/utils/postprocessing/act_thresh_label.py
2024-03-01T00:27:07,257    - Adding cyto_dl/models/im2im/utils/postprocessing/auto_thresh.py
2024-03-01T00:27:07,258    - Adding cyto_dl/models/im2im/utils/postprocessing/dict_to_im.py
2024-03-01T00:27:07,258    - Adding cyto_dl/models/utils/__init__.py
2024-03-01T00:27:07,258    - Adding cyto_dl/models/utils/mlflow.py
2024-03-01T00:27:07,258    - Adding cyto_dl/models/utils/utils.py
2024-03-01T00:27:07,258    - Adding cyto_dl/models/vae/__init__.py
2024-03-01T00:27:07,259    - Adding cyto_dl/models/vae/base_vae.py
2024-03-01T00:27:07,259    - Adding cyto_dl/models/vae/image_canon_vae.py
2024-03-01T00:27:07,259    - Adding cyto_dl/models/vae/image_encoder.py
2024-03-01T00:27:07,259    - Adding cyto_dl/models/vae/image_vae.py
2024-03-01T00:27:07,259    - Adding cyto_dl/models/vae/latent_loss_vae.py
2024-03-01T00:27:07,260    - Adding cyto_dl/models/vae/o2_spharm_vae/__init__.py
2024-03-01T00:27:07,260    - Adding cyto_dl/models/vae/o2_spharm_vae/o2_spharm_encoder.py
2024-03-01T00:27:07,260    - Adding cyto_dl/models/vae/o2_spharm_vae/o2_spharm_vae.py
2024-03-01T00:27:07,260    - Adding cyto_dl/models/vae/point_cloud_vae.py
2024-03-01T00:27:07,260    - Adding cyto_dl/models/vae/priors/__init__.py
2024-03-01T00:27:07,261    - Adding cyto_dl/models/vae/priors/abstract_prior.py
2024-03-01T00:27:07,261    - Adding cyto_dl/models/vae/priors/gaussian.py
2024-03-01T00:27:07,261    - Adding cyto_dl/models/vae/priors/identity_prior.py
2024-03-01T00:27:07,261    - Adding cyto_dl/models/vae/priors/joint_prior.py
2024-03-01T00:27:07,262    - Adding cyto_dl/models/vae/tabular_vae.py
2024-03-01T00:27:07,262    - Adding cyto_dl/nn/__init__.py
2024-03-01T00:27:07,262    - Adding cyto_dl/nn/discriminators/__init__.py
2024-03-01T00:27:07,262    - Adding cyto_dl/nn/discriminators/multi_scale_discriminator.py
2024-03-01T00:27:07,262    - Adding cyto_dl/nn/discriminators/n_layer_discriminator.py
2024-03-01T00:27:07,263    - Adding cyto_dl/nn/head/__init__.py
2024-03-01T00:27:07,263    - Adding cyto_dl/nn/head/base_head.py
2024-03-01T00:27:07,263    - Adding cyto_dl/nn/head/gan_head.py
2024-03-01T00:27:07,263    - Adding cyto_dl/nn/head/gan_head_superres.py
2024-03-01T00:27:07,263    - Adding cyto_dl/nn/head/mae_head.py
2024-03-01T00:27:07,264    - Adding cyto_dl/nn/head/mask_head.py
2024-03-01T00:27:07,264    - Adding cyto_dl/nn/head/res_blocks_head.py
2024-03-01T00:27:07,264    - Adding cyto_dl/nn/hr_skip.py
2024-03-01T00:27:07,264    - Adding cyto_dl/nn/losses/__init__.py
2024-03-01T00:27:07,264    - Adding cyto_dl/nn/losses/adversarial_loss.py
2024-03-01T00:27:07,265    - Adding cyto_dl/nn/losses/chamfer_loss.py
2024-03-01T00:27:07,265    - Adding cyto_dl/nn/losses/continuous_bernoulli.py
2024-03-01T00:27:07,265    - Adding cyto_dl/nn/losses/cosine_loss.py
2024-03-01T00:27:07,265    - Adding cyto_dl/nn/losses/gan_loss.py
2024-03-01T00:27:07,265    - Adding cyto_dl/nn/losses/gaussian_nll_loss.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/losses/geomloss.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/losses/loss_wrapper.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/losses/spharm_loss.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/losses/threshold_loss.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/losses/weibull.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/losses/weighted_mse_loss.py
2024-03-01T00:27:07,266    - Adding cyto_dl/nn/mlp.py
2024-03-01T00:27:07,267    - Adding cyto_dl/nn/point_cloud/__init__.py
2024-03-01T00:27:07,267    - Adding cyto_dl/nn/point_cloud/dgcnn.py
2024-03-01T00:27:07,267    - Adding cyto_dl/nn/point_cloud/folding_net.py
2024-03-01T00:27:07,267    - Adding cyto_dl/nn/point_cloud/graph_functions.py
2024-03-01T00:27:07,267    - Adding cyto_dl/nn/point_cloud/vnn.py
2024-03-01T00:27:07,268    - Adding cyto_dl/nn/res_unit.py
2024-03-01T00:27:07,268    - Adding cyto_dl/nn/spatial_transformer.py
2024-03-01T00:27:07,268    - Adding cyto_dl/nn/track_sequence_predictor.py
2024-03-01T00:27:07,268    - Adding cyto_dl/nn/vits/__init__.py
2024-03-01T00:27:07,269    - Adding cyto_dl/nn/vits/blocks/__init__.py
2024-03-01T00:27:07,269    - Adding cyto_dl/nn/vits/blocks/cross_attention.py
2024-03-01T00:27:07,269    - Adding cyto_dl/nn/vits/cross_mae.py
2024-03-01T00:27:07,269    - Adding cyto_dl/nn/vits/mae.py
2024-03-01T00:27:07,269    - Adding cyto_dl/nn/vits/seg.py
2024-03-01T00:27:07,270    - Adding cyto_dl/point_cloud/__init__.py
2024-03-01T00:27:07,270    - Adding cyto_dl/point_cloud/io/__init__.py
2024-03-01T00:27:07,270    - Adding cyto_dl/point_cloud/io/read_pcloud.py
2024-03-01T00:27:07,270    - Adding cyto_dl/train.py
2024-03-01T00:27:07,270    - Adding cyto_dl/utils/__init__.py
2024-03-01T00:27:07,271    - Adding cyto_dl/utils/config.py
2024-03-01T00:27:07,271    - Adding cyto_dl/utils/download_test_data.py
2024-03-01T00:27:07,271    - Adding cyto_dl/utils/dummy_dataset.py
2024-03-01T00:27:07,271    - Adding cyto_dl/utils/pylogger.py
2024-03-01T00:27:07,271    - Adding cyto_dl/utils/rich_utils.py
2024-03-01T00:27:07,272    - Adding cyto_dl/utils/rotation.py
2024-03-01T00:27:07,272    - Adding cyto_dl/utils/spharm/__init__.py
2024-03-01T00:27:07,272    - Adding cyto_dl/utils/spharm/reconstruction.py
2024-03-01T00:27:07,272    - Adding cyto_dl/utils/spharm/rotation.py
2024-03-01T00:27:07,273    - Adding cyto_dl/utils/template_utils.py
2024-03-01T00:27:07,273    - Adding cyto_dl-0.1.3.dist-info/WHEEL
2024-03-01T00:27:07,273    - Adding cyto_dl-0.1.3.dist-info/METADATA
2024-03-01T00:27:07,293   Building wheel for cyto-dl (pyproject.toml): finished with status 'done'
2024-03-01T00:27:07,300   Created wheel for cyto-dl: filename=cyto_dl-0.1.3-py3-none-any.whl size=246555 sha256=58d3046249f9d44875c1222936983dd04f88ba6bb80346b95c9899582dab7f32
2024-03-01T00:27:07,301   Stored in directory: /tmp/pip-ephem-wheel-cache-sofalcxq/wheels/18/7a/b3/504cf2ef82b75284b720d54968565ff9b8c912c949297e507e
2024-03-01T00:27:07,321 Successfully built cyto-dl
2024-03-01T00:27:07,333 Removed build tracker: '/tmp/pip-build-tracker-0c08n2jg'