2024-03-01T15:32:08,317 Created temporary directory: /tmp/pip-build-tracker-987ndyyp
2024-03-01T15:32:08,318 Initialized build tracking at /tmp/pip-build-tracker-987ndyyp
2024-03-01T15:32:08,319 Created build tracker: /tmp/pip-build-tracker-987ndyyp
2024-03-01T15:32:08,319 Entered build tracker: /tmp/pip-build-tracker-987ndyyp
2024-03-01T15:32:08,320 Created temporary directory: /tmp/pip-wheel-a5d91zot
2024-03-01T15:32:08,323 Created temporary directory: /tmp/pip-ephem-wheel-cache-thrlml6m
2024-03-01T15:32:08,345 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T15:32:08,348 2 location(s) to search for versions of moleculekit:
2024-03-01T15:32:08,348 * https://pypi.org/simple/moleculekit/
2024-03-01T15:32:08,348 * https://www.piwheels.org/simple/moleculekit/
2024-03-01T15:32:08,349 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-03-01T15:32:08,350 Getting page https://pypi.org/simple/moleculekit/
2024-03-01T15:32:08,352 Found index url https://pypi.org/simple/
2024-03-01T15:32:08,591 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-03-01T15:32:08,632   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,632   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-03-01T15:32:08,633   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,634   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-03-01T15:32:08,635   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,635   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-03-01T15:32:08,636   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,637   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-03-01T15:32:08,638   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,639   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-03-01T15:32:08,639   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,640   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-03-01T15:32:08,641   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,642   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-03-01T15:32:08,642   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,643   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-03-01T15:32:08,643   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,644   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-03-01T15:32:08,644   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,645   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-03-01T15:32:08,646   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,646   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-03-01T15:32:08,647   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,648   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-03-01T15:32:08,649   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,649   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-03-01T15:32:08,650   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,651   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-03-01T15:32:08,651   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,652   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-03-01T15:32:08,653   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,654   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-03-01T15:32:08,655   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,655   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-03-01T15:32:08,656   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,656   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-03-01T15:32:08,657   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,658   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-03-01T15:32:08,658   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,659   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-03-01T15:32:08,660   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,660   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-03-01T15:32:08,661   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,662   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-03-01T15:32:08,662   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,663   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-03-01T15:32:08,664   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,664   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-03-01T15:32:08,665   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,666   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-03-01T15:32:08,666   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,667   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-03-01T15:32:08,667   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,668   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-03-01T15:32:08,668   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,669   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-03-01T15:32:08,670   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,670   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-03-01T15:32:08,671   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,671   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-03-01T15:32:08,672   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,673   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-03-01T15:32:08,674   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,674   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-03-01T15:32:08,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,676   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-03-01T15:32:08,676   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,677   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-03-01T15:32:08,678   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-03-01T15:32:08,679   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2024-03-01T15:32:08,681   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
2024-03-01T15:32:08,681   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/94/5a/b800d3737fc73a0197bf983ce179f8bedaa71a331029a733aefedc2a8a0c/moleculekit-0.3.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,682   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2024-03-01T15:32:08,683   Found link https://files.pythonhosted.org/packages/29/c4/2af9ce826d6a8d2327401dd1a05b3beff8e1f96911d0e334db20410975ee/moleculekit-0.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.7
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2024-03-01T15:32:08,685   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
2024-03-01T15:32:08,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1f/d2/4da1254f5b07bedf974fdb9f19ab694a6cf553dc50ab700e3b09ec000031/moleculekit-0.3.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,686   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-03-01T15:32:08,687   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,687   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-03-01T15:32:08,688   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,688   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
2024-03-01T15:32:08,689   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ed/8c/cf4a2f026f7b867bcc33cfac6c1fede5ee244c962112f0dc245fcac0939b/moleculekit-0.4.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,690   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-03-01T15:32:08,691   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,691   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
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2024-03-01T15:32:08,693   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-03-01T15:32:08,693   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,694   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
2024-03-01T15:32:08,695   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3f/a5/68b5af554f766d3dceef94275a75af28358200e0f741a86d38db878c60e1/moleculekit-0.4.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,695   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
2024-03-01T15:32:08,696   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,697   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
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2024-03-01T15:32:08,698   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
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2024-03-01T15:32:08,699   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
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2024-03-01T15:32:08,701   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,702   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/33/cb/c92c01bcbe6721a0de0efc2a6000170f30941c58471578d25966f935c655/moleculekit-0.5.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,702   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/13/6a/e73e6d343e35473a200e0744ab09efaa39adeebbbe191f752bc23d7a9b3a/moleculekit-0.5.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,703   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,703   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T15:32:08,704   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-01T15:32:08,708   Found link https://files.pythonhosted.org/packages/17/1c/02715b1ba7af95549df42e637af515cc5f062c0a6fb8bdeca03404949043/moleculekit-0.7.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.0
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2024-03-01T15:32:08,723   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-03-01T15:32:08,724   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-03-01T15:32:08,725   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-03-01T15:32:08,725   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-03-01T15:32:08,726   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-03-01T15:32:08,727   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-03-01T15:32:08,728   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-03-01T15:32:08,728   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-03-01T15:32:08,729   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-03-01T15:32:08,730   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-03-01T15:32:08,731   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-03-01T15:32:08,732   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-03-01T15:32:08,732   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-03-01T15:32:08,733   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-03-01T15:32:08,734   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-03-01T15:32:08,734   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-03-01T15:32:08,735   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-03-01T15:32:08,735   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-03-01T15:32:08,736   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-03-01T15:32:08,737   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-03-01T15:32:08,738   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-03-01T15:32:08,738   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-03-01T15:32:08,739   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-03-01T15:32:08,740   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-03-01T15:32:08,741   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-03-01T15:32:08,741   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-03-01T15:32:08,742   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-03-01T15:32:08,743   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-03-01T15:32:08,744   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-03-01T15:32:08,744   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-03-01T15:32:08,745   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-03-01T15:32:08,745   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-03-01T15:32:08,746   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-03-01T15:32:08,747   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-03-01T15:32:08,747   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-03-01T15:32:08,748   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-03-01T15:32:08,749   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-03-01T15:32:08,749   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-03-01T15:32:08,750   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-03-01T15:32:08,751   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-03-01T15:32:08,751   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-03-01T15:32:08,752   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-03-01T15:32:08,753   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-03-01T15:32:08,753   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-03-01T15:32:08,754   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-03-01T15:32:08,755   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-03-01T15:32:08,756   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-03-01T15:32:08,756   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-03-01T15:32:08,757   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-03-01T15:32:08,758   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-03-01T15:32:08,759   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-03-01T15:32:08,760   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-03-01T15:32:08,761   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-03-01T15:32:08,762   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-03-01T15:32:08,763   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-03-01T15:32:08,764   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-03-01T15:32:08,764   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-03-01T15:32:08,765   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-03-01T15:32:08,766   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-03-01T15:32:08,767   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-03-01T15:32:08,768   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-03-01T15:32:08,769   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-03-01T15:32:08,770   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-03-01T15:32:08,772   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-03-01T15:32:08,772   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-03-01T15:32:08,773   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-03-01T15:32:08,774   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-03-01T15:32:08,775   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-03-01T15:32:08,776   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-03-01T15:32:08,777   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-03-01T15:32:08,778   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-03-01T15:32:08,779   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-03-01T15:32:08,780   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-03-01T15:32:08,781   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-03-01T15:32:08,782   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-03-01T15:32:08,783   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-03-01T15:32:08,784   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-03-01T15:32:08,785   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-03-01T15:32:08,786   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-03-01T15:32:08,787   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-03-01T15:32:08,788   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-03-01T15:32:08,789   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-03-01T15:32:08,789   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-03-01T15:32:08,790   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-03-01T15:32:08,791   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-03-01T15:32:08,792   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-03-01T15:32:08,793   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-03-01T15:32:08,794   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-03-01T15:32:08,795   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-03-01T15:32:08,797   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-03-01T15:32:08,798   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-03-01T15:32:08,799   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-03-01T15:32:08,799   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-03-01T15:32:08,801   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-03-01T15:32:08,802   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-03-01T15:32:08,803   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-03-01T15:32:08,803   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-03-01T15:32:08,804   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-03-01T15:32:08,805   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-03-01T15:32:08,806   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-03-01T15:32:08,807   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-03-01T15:32:08,808   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-03-01T15:32:08,809   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-03-01T15:32:08,810   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-03-01T15:32:08,811   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-03-01T15:32:08,812 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-03-01T15:32:08,813 Getting page https://www.piwheels.org/simple/moleculekit/
2024-03-01T15:32:08,814 Found index url https://www.piwheels.org/simple/
2024-03-01T15:32:09,473 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-03-01T15:32:09,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-01T15:32:09,596   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,596   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv6l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,597   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv7l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,597   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv6l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,598   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv7l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,598   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,599   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,599   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv6l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,600   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,601   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,601   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv7l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,602   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,603   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,603   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv6l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,604   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv7l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,605   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv6l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,605   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp39-cp39-linux_armv7l.whl#sha256=3cdd3e0a26b0236f09190dda12704a15cb0c469df96bb7ee67c65fd5f23156a7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv6l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,606   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp311-cp311-linux_armv7l.whl#sha256=f4c3244cbdde104e70696f495020b9978546102c49bdb5bc8cd8e1aaa3425d28 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv6l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T15:32:09,607   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.19-cp39-cp39-linux_armv7l.whl#sha256=c2a5f3b8eb6a8b392e376afc691a0a2898e427584ca7d0911fddfcf4068f111d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-01T15:32:09,712   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,713   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,714   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,714   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,715   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,715   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,716   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,717   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,717   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,718   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,718   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,719   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,720   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,720   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,721   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,722   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,722   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,723   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,723   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,724   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,725   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,726   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,726   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,727   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,727   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,728   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,729   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,729   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,730   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,731   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,731   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,732   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,733   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,734   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,734   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,735   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,735   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,736   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,736   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,737   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,737   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,738   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,739   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,739   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,740   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,740   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,741   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,742   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,742   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,743   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,743   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,744   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,744   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,745   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,746   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,746   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,747   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,747   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,748   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,748   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,749   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,750   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-01T15:32:09,763   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,763   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,764   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,764   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,765   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,766   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,766   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,767   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,767   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,768   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,768   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,769   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,769   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,770   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,770   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,771   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,771   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,772   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,772   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,773   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,774   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,774   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,775   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,775   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,776   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,776   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,777   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,777   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,778   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,778   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,779   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,779   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,780   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,780   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,781   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,782   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,782   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,783   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,783   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,784   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,784   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,785   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,785   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,786   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,787   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,787   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,788   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,788   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T15:32:09,789 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-03-01T15:32:09,790 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-03-01T15:32:09,829 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-03-01T15:32:09,848 Collecting moleculekit==1.8.26
2024-03-01T15:32:09,850   Created temporary directory: /tmp/pip-unpack-vazb183z
2024-03-01T15:32:10,085   Downloading moleculekit-1.8.26.tar.gz (6.8 MB)
2024-03-01T15:32:14,166   Added moleculekit==1.8.26 from https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz to build tracker '/tmp/pip-build-tracker-987ndyyp'
2024-03-01T15:32:14,174   Created temporary directory: /tmp/pip-build-env-56tjx_ps
2024-03-01T15:32:14,180   Installing build dependencies: started
2024-03-01T15:32:14,181   Running command pip subprocess to install build dependencies
2024-03-01T15:32:15,386   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-01T15:32:15,915   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T15:32:17,905   Collecting setuptools
2024-03-01T15:32:20,575     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-03-01T15:32:21,266     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-01T15:32:21,271     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-01T15:32:21,274     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-01T15:32:21,278     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-01T15:32:21,282     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-01T15:32:21,716   Collecting numpy>=1.18.5
2024-03-01T15:32:22,734     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-03-01T15:32:24,203   Collecting Cython>=0.29.21
2024-03-01T15:32:26,910     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/cython/Cython-3.0.8-cp311-cp311-linux_armv7l.whl
2024-03-01T15:32:27,274     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.8-cp311-cp311-linux_armv7l.whl (11.7 MB)
2024-03-01T15:32:29,127   Collecting toml
2024-03-01T15:32:29,149     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-03-01T15:32:29,266   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-03-01T15:32:29,303     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-03-01T15:32:31,902   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-03-01T15:32:31,933     Creating /tmp/pip-build-env-56tjx_ps/overlay/local/bin
2024-03-01T15:32:31,935     changing mode of /tmp/pip-build-env-56tjx_ps/overlay/local/bin/versioneer to 755
2024-03-01T15:32:42,580     changing mode of /tmp/pip-build-env-56tjx_ps/overlay/local/bin/f2py to 755
2024-03-01T15:32:46,133     changing mode of /tmp/pip-build-env-56tjx_ps/overlay/local/bin/cygdb to 755
2024-03-01T15:32:46,135     changing mode of /tmp/pip-build-env-56tjx_ps/overlay/local/bin/cython to 755
2024-03-01T15:32:46,137     changing mode of /tmp/pip-build-env-56tjx_ps/overlay/local/bin/cythonize to 755
2024-03-01T15:32:46,183   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 versioneer-0.28

2024-03-01T15:32:46,517   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-03-01T15:32:46,517   [notice] To update, run: python3 -m pip install --upgrade pip
2024-03-01T15:32:46,966   Installing build dependencies: finished with status 'done'
2024-03-01T15:32:46,970   Getting requirements to build wheel: started
2024-03-01T15:32:46,971   Running command Getting requirements to build wheel
2024-03-01T15:33:24,071   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-03-01T15:33:32,150   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,150   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,151   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,152   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,152   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,153   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,153   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,154   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,154   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,155   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,155   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-01T15:33:32,156   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-01T15:33:32,156   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-01T15:33:32,157   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-01T15:33:32,157   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T15:33:32,158   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-03-01T15:33:32,159   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-03-01T15:33:32,159   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-03-01T15:33:32,160   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-03-01T15:33:32,160   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-03-01T15:33:32,161   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-03-01T15:33:32,161   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-03-01T15:33:32,161   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-03-01T15:33:32,162   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-03-01T15:33:32,162   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-03-01T15:33:32,163   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-03-01T15:33:32,163   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-03-01T15:33:32,164   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-03-01T15:33:32,164   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-03-01T15:33:32,165   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-03-01T15:33:32,422   running egg_info
2024-03-01T15:33:32,428   writing moleculekit.egg-info/PKG-INFO
2024-03-01T15:33:32,431   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-01T15:33:32,433   writing requirements to moleculekit.egg-info/requires.txt
2024-03-01T15:33:32,434   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-01T15:33:32,462   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,463   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,463   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,463   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,464   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,465   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,465   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,466   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,466   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,467   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,468   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,468   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,469   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,469   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,470   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,470   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,471   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,471   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,472   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,472   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,473   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,473   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,474   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,474   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,475   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,475   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,476   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,476   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,477   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,478   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,478   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,479   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,479   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,479   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,480   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,480   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,481   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,481   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,482   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-03-01T15:33:32,483   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:32,484   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-03-01T15:33:32,485   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-03-01T15:33:32,501   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T15:33:32,524   reading manifest template 'MANIFEST.in'
2024-03-01T15:33:32,772   no previously-included directories found matching 'moleculekit/test-data'
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2024-03-01T15:33:32,775   adding license file 'LICENSE'
2024-03-01T15:33:32,790   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T15:33:34,245   Getting requirements to build wheel: finished with status 'done'
2024-03-01T15:33:34,259   Installing backend dependencies: started
2024-03-01T15:33:34,260   Running command pip subprocess to install backend dependencies
2024-03-01T15:33:35,494   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-01T15:33:36,065   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T15:33:36,567   Collecting wheel
2024-03-01T15:33:36,583     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-03-01T15:33:39,060   Installing collected packages: wheel
2024-03-01T15:33:39,292     Creating /tmp/pip-build-env-56tjx_ps/normal/local/bin
2024-03-01T15:33:39,295     changing mode of /tmp/pip-build-env-56tjx_ps/normal/local/bin/wheel to 755
2024-03-01T15:33:39,310   Successfully installed wheel-0.42.0

2024-03-01T15:33:39,653   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-03-01T15:33:39,654   [notice] To update, run: python3 -m pip install --upgrade pip
2024-03-01T15:33:39,887   Installing backend dependencies: finished with status 'done'
2024-03-01T15:33:39,889   Created temporary directory: /tmp/pip-modern-metadata-j_x0psmw
2024-03-01T15:33:39,891   Preparing metadata (pyproject.toml): started
2024-03-01T15:33:39,893   Running command Preparing metadata (pyproject.toml)
2024-03-01T15:33:42,730   running dist_info
2024-03-01T15:33:42,732   creating /tmp/pip-modern-metadata-j_x0psmw/moleculekit.egg-info
2024-03-01T15:33:42,737   writing /tmp/pip-modern-metadata-j_x0psmw/moleculekit.egg-info/PKG-INFO
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2024-03-01T15:33:42,797   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,798   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,798   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,799   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,799   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,800   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,800   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,801   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,802   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,802   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,803   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,803   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,803   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,804   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,804   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,805   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,806   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,806   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,807   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,807   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,808   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,808   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,809   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,809   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,809   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,810   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,811   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,811   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,811   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:42,812   reading manifest file '/tmp/pip-modern-metadata-j_x0psmw/moleculekit.egg-info/SOURCES.txt'
2024-03-01T15:33:42,812   reading manifest template 'MANIFEST.in'
2024-03-01T15:33:43,155   no previously-included directories found matching 'moleculekit/test-data'
2024-03-01T15:33:43,156   no previously-included directories found matching 'moleculekit/tests'
2024-03-01T15:33:43,157   no previously-included directories found matching 'package'
2024-03-01T15:33:43,157   adding license file 'LICENSE'
2024-03-01T15:33:43,169   writing manifest file '/tmp/pip-modern-metadata-j_x0psmw/moleculekit.egg-info/SOURCES.txt'
2024-03-01T15:33:43,177   creating '/tmp/pip-modern-metadata-j_x0psmw/moleculekit-1.8.26.dist-info'
2024-03-01T15:33:43,414   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-01T15:33:43,422   Source in /tmp/pip-wheel-a5d91zot/moleculekit_c9a277e18681451aab0a7a12abe7889f has version 1.8.26, which satisfies requirement moleculekit==1.8.26 from https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz
2024-03-01T15:33:43,423   Removed moleculekit==1.8.26 from https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz from build tracker '/tmp/pip-build-tracker-987ndyyp'
2024-03-01T15:33:43,429 Created temporary directory: /tmp/pip-unpack-0ad87no9
2024-03-01T15:33:43,430 Created temporary directory: /tmp/pip-unpack-cum4gsb_
2024-03-01T15:33:43,438 Building wheels for collected packages: moleculekit
2024-03-01T15:33:43,444   Created temporary directory: /tmp/pip-wheel-tby895pk
2024-03-01T15:33:43,444   Destination directory: /tmp/pip-wheel-tby895pk
2024-03-01T15:33:43,448   Building wheel for moleculekit (pyproject.toml): started
2024-03-01T15:33:43,449   Running command Building wheel for moleculekit (pyproject.toml)
2024-03-01T15:33:46,206   running bdist_wheel
2024-03-01T15:33:46,220   running build
2024-03-01T15:33:46,221   running build_py
2024-03-01T15:33:46,228   creating build
2024-03-01T15:33:46,228   creating build/lib.linux-armv7l-cpython-311
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2024-03-01T15:33:46,234   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,236   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,238   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,241   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,247   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,250   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,254   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,256   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,258   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,260   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,261   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,264   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,269   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,271   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,273   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,275   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,278   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:46,279   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
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2024-03-01T15:33:46,284   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
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2024-03-01T15:33:46,290   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-01T15:33:46,294   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-01T15:33:46,297   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-01T15:33:46,299   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,300   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,303   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,305   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,308   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,310   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,312   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-01T15:33:46,316   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-01T15:33:46,317   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-01T15:33:46,320   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-01T15:33:46,323   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-03-01T15:33:46,324   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-03-01T15:33:46,326   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-01T15:33:46,327   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-01T15:33:46,329   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-01T15:33:46,331   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-01T15:33:46,333   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-01T15:33:46,336   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,337   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,341   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,344   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,346   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,348   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,349   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,352   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,355   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,357   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,361   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,364   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,367   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,370   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,372   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-01T15:33:46,377   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-01T15:33:46,379   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-01T15:33:46,385   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-01T15:33:46,387   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-01T15:33:46,390   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,391   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,394   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,396   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,399   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,403   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,405   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,408   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,410   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,413   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,416   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,418   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,423   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,430   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,434   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,437   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-01T15:33:46,439   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-01T15:33:46,440   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-01T15:33:46,442   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-01T15:33:46,444   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-01T15:33:46,446   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-01T15:33:46,449   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-01T15:33:46,450   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-01T15:33:46,451   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-01T15:33:46,454   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-01T15:33:46,457   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-01T15:33:46,460   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-01T15:33:46,461   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-01T15:33:46,465   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-01T15:33:46,468   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-01T15:33:46,470   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-01T15:33:46,472   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
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2024-03-01T15:33:46,476   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-01T15:33:46,480   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-01T15:33:46,480   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-01T15:33:46,482   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-01T15:33:46,484   running egg_info
2024-03-01T15:33:46,489   writing moleculekit.egg-info/PKG-INFO
2024-03-01T15:33:46,492   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-01T15:33:46,493   writing requirements to moleculekit.egg-info/requires.txt
2024-03-01T15:33:46,494   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-01T15:33:46,511   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,512   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,512   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,513   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,513   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,514   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,514   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,515   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,515   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,516   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,516   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,517   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,517   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,518   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,518   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,519   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,519   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,520   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,520   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,521   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,521   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,522   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,522   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,523   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,523   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,524   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,524   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,525   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,525   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,526   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,526   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,526   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,527   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,527   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,528   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,529   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,529   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,530   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,530   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,531   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,531   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,532   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,532   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,533   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,533   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,534   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,534   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,535   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,535   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,536   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,536   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,536   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,537   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,537   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,538   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,538   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,539   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,539   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,540   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,540   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,541   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,541   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,542   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,542   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,543   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,543   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,543   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,544   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,544   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,545   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,545   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,546   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,546   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,547   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,547   dependency /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T15:33:46,548   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T15:33:46,548   reading manifest template 'MANIFEST.in'
2024-03-01T15:33:47,117   no previously-included directories found matching 'moleculekit/test-data'
2024-03-01T15:33:47,118   no previously-included directories found matching 'moleculekit/tests'
2024-03-01T15:33:47,119   no previously-included directories found matching 'package'
2024-03-01T15:33:47,119   adding license file 'LICENSE'
2024-03-01T15:33:47,134   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T15:33:47,143   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-03-01T15:33:47,144   !!

2024-03-01T15:33:47,145           ********************************************************************************
2024-03-01T15:33:47,145           ############################
2024-03-01T15:33:47,146           # Package would be ignored #
2024-03-01T15:33:47,146           ############################
2024-03-01T15:33:47,147           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-03-01T15:33:47,147           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,148           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,148           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-03-01T15:33:47,149           to the `packages` configuration field.

2024-03-01T15:33:47,150           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,151           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,151           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,152           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,153           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,154           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-03-01T15:33:47,155           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-03-01T15:33:47,155           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,156           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,156           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,157           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,158           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,159           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,160                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,160                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,161                 directory, all directories are treated like packages.
2024-03-01T15:33:47,161           ********************************************************************************

2024-03-01T15:33:47,162   !!
2024-03-01T15:33:47,162     check.warn(importable)
2024-03-01T15:33:47,163   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-03-01T15:33:47,163   !!

2024-03-01T15:33:47,164           ********************************************************************************
2024-03-01T15:33:47,165           ############################
2024-03-01T15:33:47,165           # Package would be ignored #
2024-03-01T15:33:47,166           ############################
2024-03-01T15:33:47,166           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-03-01T15:33:47,167           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,167           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,168           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-03-01T15:33:47,168           to the `packages` configuration field.

2024-03-01T15:33:47,170           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,170           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,170           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,171           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,172           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,173           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-03-01T15:33:47,173           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-03-01T15:33:47,174           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,174           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,175           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,175           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,176           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,178           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,178                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,178                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,179                 directory, all directories are treated like packages.
2024-03-01T15:33:47,179           ********************************************************************************

2024-03-01T15:33:47,180   !!
2024-03-01T15:33:47,180     check.warn(importable)
2024-03-01T15:33:47,181   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-03-01T15:33:47,181   !!

2024-03-01T15:33:47,182           ********************************************************************************
2024-03-01T15:33:47,183           ############################
2024-03-01T15:33:47,183           # Package would be ignored #
2024-03-01T15:33:47,183           ############################
2024-03-01T15:33:47,184           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-03-01T15:33:47,184           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,185           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,186           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-03-01T15:33:47,186           to the `packages` configuration field.

2024-03-01T15:33:47,187           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,188           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,189           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,190           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,192           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,194           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-03-01T15:33:47,195           already explicitly excluding 'moleculekit.cython_utils' via
2024-03-01T15:33:47,196           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,197           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,198           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,200           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,202           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,203           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,204                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,204                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,205                 directory, all directories are treated like packages.
2024-03-01T15:33:47,205           ********************************************************************************

2024-03-01T15:33:47,206   !!
2024-03-01T15:33:47,207     check.warn(importable)
2024-03-01T15:33:47,207   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-03-01T15:33:47,208   !!

2024-03-01T15:33:47,209           ********************************************************************************
2024-03-01T15:33:47,210           ############################
2024-03-01T15:33:47,211           # Package would be ignored #
2024-03-01T15:33:47,211           ############################
2024-03-01T15:33:47,212           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-03-01T15:33:47,213           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,215           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,216           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-03-01T15:33:47,217           to the `packages` configuration field.

2024-03-01T15:33:47,219           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,220           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,221           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,222           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,223           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,224           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-03-01T15:33:47,224           already explicitly excluding 'moleculekit.distance_utils' via
2024-03-01T15:33:47,225           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,225           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,226           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,227           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,228           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,230           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,231                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,231                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,232                 directory, all directories are treated like packages.
2024-03-01T15:33:47,232           ********************************************************************************

2024-03-01T15:33:47,233   !!
2024-03-01T15:33:47,234     check.warn(importable)
2024-03-01T15:33:47,234   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-03-01T15:33:47,235   !!

2024-03-01T15:33:47,236           ********************************************************************************
2024-03-01T15:33:47,236           ############################
2024-03-01T15:33:47,237           # Package would be ignored #
2024-03-01T15:33:47,238           ############################
2024-03-01T15:33:47,239           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-03-01T15:33:47,240           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,241           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,242           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-03-01T15:33:47,242           to the `packages` configuration field.

2024-03-01T15:33:47,243           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,243           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,244           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,245           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,246           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,246           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-03-01T15:33:47,247           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-03-01T15:33:47,247           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,248           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,249           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,250           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,252           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,287           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,287                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,297                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,298                 directory, all directories are treated like packages.
2024-03-01T15:33:47,299           ********************************************************************************

2024-03-01T15:33:47,301   !!
2024-03-01T15:33:47,302     check.warn(importable)
2024-03-01T15:33:47,303   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-03-01T15:33:47,304   !!

2024-03-01T15:33:47,307           ********************************************************************************
2024-03-01T15:33:47,308           ############################
2024-03-01T15:33:47,309           # Package would be ignored #
2024-03-01T15:33:47,310           ############################
2024-03-01T15:33:47,311           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-03-01T15:33:47,312           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,314           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,315           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-03-01T15:33:47,316           to the `packages` configuration field.

2024-03-01T15:33:47,319           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,357           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,358           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,358           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,359           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,360           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-03-01T15:33:47,361           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-03-01T15:33:47,361           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,362           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,362           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,363           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,363           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,365           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,365                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,366                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,366                 directory, all directories are treated like packages.
2024-03-01T15:33:47,366           ********************************************************************************

2024-03-01T15:33:47,367   !!
2024-03-01T15:33:47,368     check.warn(importable)
2024-03-01T15:33:47,368   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-03-01T15:33:47,368   !!

2024-03-01T15:33:47,370           ********************************************************************************
2024-03-01T15:33:47,370           ############################
2024-03-01T15:33:47,371           # Package would be ignored #
2024-03-01T15:33:47,371           ############################
2024-03-01T15:33:47,372           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-03-01T15:33:47,372           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,373           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,373           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-03-01T15:33:47,374           to the `packages` configuration field.

2024-03-01T15:33:47,375           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,375           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,375           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,376           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,378           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,379           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-03-01T15:33:47,379           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-03-01T15:33:47,379           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,380           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,380           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,382           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,382           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,384           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,384                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,385                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,385                 directory, all directories are treated like packages.
2024-03-01T15:33:47,386           ********************************************************************************

2024-03-01T15:33:47,387   !!
2024-03-01T15:33:47,387     check.warn(importable)
2024-03-01T15:33:47,388   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-03-01T15:33:47,388   !!

2024-03-01T15:33:47,389           ********************************************************************************
2024-03-01T15:33:47,389           ############################
2024-03-01T15:33:47,389           # Package would be ignored #
2024-03-01T15:33:47,390           ############################
2024-03-01T15:33:47,390           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-03-01T15:33:47,391           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,392           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,392           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-03-01T15:33:47,392           to the `packages` configuration field.

2024-03-01T15:33:47,393           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,394           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,394           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,395           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,396           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,397           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-03-01T15:33:47,397           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-03-01T15:33:47,397           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,398           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,398           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,399           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,400           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,401           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,401                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,402                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,402                 directory, all directories are treated like packages.
2024-03-01T15:33:47,403           ********************************************************************************

2024-03-01T15:33:47,403   !!
2024-03-01T15:33:47,404     check.warn(importable)
2024-03-01T15:33:47,404   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-03-01T15:33:47,405   !!

2024-03-01T15:33:47,406           ********************************************************************************
2024-03-01T15:33:47,406           ############################
2024-03-01T15:33:47,407           # Package would be ignored #
2024-03-01T15:33:47,407           ############################
2024-03-01T15:33:47,407           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-03-01T15:33:47,408           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,409           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,409           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-03-01T15:33:47,409           to the `packages` configuration field.

2024-03-01T15:33:47,410           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,411           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,411           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,412           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,413           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,414           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-03-01T15:33:47,414           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-03-01T15:33:47,414           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,415           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,416           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,417           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,417           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,419           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,419                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,420                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,420                 directory, all directories are treated like packages.
2024-03-01T15:33:47,420           ********************************************************************************

2024-03-01T15:33:47,421   !!
2024-03-01T15:33:47,422     check.warn(importable)
2024-03-01T15:33:47,422   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-03-01T15:33:47,423   !!

2024-03-01T15:33:47,423           ********************************************************************************
2024-03-01T15:33:47,424           ############################
2024-03-01T15:33:47,424           # Package would be ignored #
2024-03-01T15:33:47,425           ############################
2024-03-01T15:33:47,425           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-03-01T15:33:47,426           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,427           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,427           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-03-01T15:33:47,428           to the `packages` configuration field.

2024-03-01T15:33:47,429           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,429           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,430           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,431           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,432           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,433           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-03-01T15:33:47,433           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-03-01T15:33:47,434           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,434           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,435           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,436           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,437           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,438           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,439                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,439                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,439                 directory, all directories are treated like packages.
2024-03-01T15:33:47,440           ********************************************************************************

2024-03-01T15:33:47,441   !!
2024-03-01T15:33:47,442     check.warn(importable)
2024-03-01T15:33:47,442   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-03-01T15:33:47,442   !!

2024-03-01T15:33:47,443           ********************************************************************************
2024-03-01T15:33:47,444           ############################
2024-03-01T15:33:47,444           # Package would be ignored #
2024-03-01T15:33:47,445           ############################
2024-03-01T15:33:47,445           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-03-01T15:33:47,446           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,446           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,447           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-03-01T15:33:47,447           to the `packages` configuration field.

2024-03-01T15:33:47,448           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,449           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,449           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,451           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,457           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,468           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-03-01T15:33:47,469           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-03-01T15:33:47,469           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,470           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,471           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,473           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,474           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,477           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,477                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,478                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,478                 directory, all directories are treated like packages.
2024-03-01T15:33:47,479           ********************************************************************************

2024-03-01T15:33:47,480   !!
2024-03-01T15:33:47,481     check.warn(importable)
2024-03-01T15:33:47,481   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-03-01T15:33:47,482   !!

2024-03-01T15:33:47,483           ********************************************************************************
2024-03-01T15:33:47,483           ############################
2024-03-01T15:33:47,484           # Package would be ignored #
2024-03-01T15:33:47,484           ############################
2024-03-01T15:33:47,485           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-03-01T15:33:47,486           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,491           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,494           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-03-01T15:33:47,496           to the `packages` configuration field.

2024-03-01T15:33:47,497           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,497           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,498           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,499           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,500           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,501           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-03-01T15:33:47,501           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-03-01T15:33:47,506           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,508           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,509           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,517           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,520           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,521           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,522                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,522                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,523                 directory, all directories are treated like packages.
2024-03-01T15:33:47,523           ********************************************************************************

2024-03-01T15:33:47,524   !!
2024-03-01T15:33:47,525     check.warn(importable)
2024-03-01T15:33:47,525   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-03-01T15:33:47,526   !!

2024-03-01T15:33:47,527           ********************************************************************************
2024-03-01T15:33:47,527           ############################
2024-03-01T15:33:47,528           # Package would be ignored #
2024-03-01T15:33:47,529           ############################
2024-03-01T15:33:47,529           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-03-01T15:33:47,530           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,531           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,532           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-03-01T15:33:47,533           to the `packages` configuration field.

2024-03-01T15:33:47,539           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,551           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,560           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,562           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,563           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,564           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-03-01T15:33:47,565           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-03-01T15:33:47,565           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,566           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,567           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,567           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,569           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,570           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,571                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,571                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,572                 directory, all directories are treated like packages.
2024-03-01T15:33:47,573           ********************************************************************************

2024-03-01T15:33:47,576   !!
2024-03-01T15:33:47,577     check.warn(importable)
2024-03-01T15:33:47,581   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-03-01T15:33:47,589   !!

2024-03-01T15:33:47,590           ********************************************************************************
2024-03-01T15:33:47,590           ############################
2024-03-01T15:33:47,591           # Package would be ignored #
2024-03-01T15:33:47,591           ############################
2024-03-01T15:33:47,592           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-03-01T15:33:47,592           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,594           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,594           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-03-01T15:33:47,595           to the `packages` configuration field.

2024-03-01T15:33:47,596           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,596           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,597           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,598           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,599           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,600           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-03-01T15:33:47,601           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-03-01T15:33:47,601           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,602           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,602           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,603           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,605           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,607           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,607                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,608                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,608                 directory, all directories are treated like packages.
2024-03-01T15:33:47,609           ********************************************************************************

2024-03-01T15:33:47,610   !!
2024-03-01T15:33:47,611     check.warn(importable)
2024-03-01T15:33:47,612   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-03-01T15:33:47,612   !!

2024-03-01T15:33:47,613           ********************************************************************************
2024-03-01T15:33:47,614           ############################
2024-03-01T15:33:47,614           # Package would be ignored #
2024-03-01T15:33:47,615           ############################
2024-03-01T15:33:47,615           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-03-01T15:33:47,616           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,617           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,617           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-03-01T15:33:47,618           to the `packages` configuration field.

2024-03-01T15:33:47,619           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,619           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,620           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,621           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,622           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,623           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-03-01T15:33:47,624           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-03-01T15:33:47,624           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,625           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,625           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,626           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,627           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,629           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,630                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,630                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,631                 directory, all directories are treated like packages.
2024-03-01T15:33:47,631           ********************************************************************************

2024-03-01T15:33:47,633   !!
2024-03-01T15:33:47,633     check.warn(importable)
2024-03-01T15:33:47,634   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-03-01T15:33:47,634   !!

2024-03-01T15:33:47,635           ********************************************************************************
2024-03-01T15:33:47,636           ############################
2024-03-01T15:33:47,637           # Package would be ignored #
2024-03-01T15:33:47,637           ############################
2024-03-01T15:33:47,638           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-03-01T15:33:47,639           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,640           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,640           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-03-01T15:33:47,641           to the `packages` configuration field.

2024-03-01T15:33:47,642           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,643           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,643           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,644           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,646           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,647           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-03-01T15:33:47,647           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-03-01T15:33:47,648           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,648           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,649           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,650           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,651           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,653           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,653                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,654                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,655                 directory, all directories are treated like packages.
2024-03-01T15:33:47,655           ********************************************************************************

2024-03-01T15:33:47,657   !!
2024-03-01T15:33:47,658     check.warn(importable)
2024-03-01T15:33:47,659   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-03-01T15:33:47,659   !!

2024-03-01T15:33:47,660           ********************************************************************************
2024-03-01T15:33:47,661           ############################
2024-03-01T15:33:47,662           # Package would be ignored #
2024-03-01T15:33:47,662           ############################
2024-03-01T15:33:47,663           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-03-01T15:33:47,663           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,665           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,665           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-03-01T15:33:47,666           to the `packages` configuration field.

2024-03-01T15:33:47,700           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,709           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,725           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,750           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,798           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,806           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-03-01T15:33:47,807           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-03-01T15:33:47,808           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,808           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,809           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,810           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,811           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,813           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,814                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,814                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,814                 directory, all directories are treated like packages.
2024-03-01T15:33:47,815           ********************************************************************************

2024-03-01T15:33:47,816   !!
2024-03-01T15:33:47,816     check.warn(importable)
2024-03-01T15:33:47,819   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-03-01T15:33:47,820   !!

2024-03-01T15:33:47,822           ********************************************************************************
2024-03-01T15:33:47,822           ############################
2024-03-01T15:33:47,823           # Package would be ignored #
2024-03-01T15:33:47,823           ############################
2024-03-01T15:33:47,824           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-03-01T15:33:47,825           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,827           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,827           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-03-01T15:33:47,828           to the `packages` configuration field.

2024-03-01T15:33:47,829           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,830           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,831           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,833           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,837           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,839           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-03-01T15:33:47,840           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-03-01T15:33:47,841           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,841           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,842           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,843           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,845           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,847           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,847                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,848                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,849                 directory, all directories are treated like packages.
2024-03-01T15:33:47,849           ********************************************************************************

2024-03-01T15:33:47,851   !!
2024-03-01T15:33:47,852     check.warn(importable)
2024-03-01T15:33:47,852   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-03-01T15:33:47,853   !!

2024-03-01T15:33:47,855           ********************************************************************************
2024-03-01T15:33:47,855           ############################
2024-03-01T15:33:47,856           # Package would be ignored #
2024-03-01T15:33:47,857           ############################
2024-03-01T15:33:47,857           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-03-01T15:33:47,858           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,859           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,860           package, please make sure that 'moleculekit.share' is explicitly added
2024-03-01T15:33:47,860           to the `packages` configuration field.

2024-03-01T15:33:47,861           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,862           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,862           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,863           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,865           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,867           If you don't want 'moleculekit.share' to be distributed and are
2024-03-01T15:33:47,868           already explicitly excluding 'moleculekit.share' via
2024-03-01T15:33:47,868           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,869           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,870           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,871           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,872           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,874           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,875                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,876                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,876                 directory, all directories are treated like packages.
2024-03-01T15:33:47,877           ********************************************************************************

2024-03-01T15:33:47,878   !!
2024-03-01T15:33:47,879     check.warn(importable)
2024-03-01T15:33:47,879   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-03-01T15:33:47,880   !!

2024-03-01T15:33:47,881           ********************************************************************************
2024-03-01T15:33:47,882           ############################
2024-03-01T15:33:47,883           # Package would be ignored #
2024-03-01T15:33:47,884           ############################
2024-03-01T15:33:47,885           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-03-01T15:33:47,885           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,886           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,887           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-03-01T15:33:47,887           to the `packages` configuration field.

2024-03-01T15:33:47,888           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,889           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,889           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,891           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,892           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,893           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-03-01T15:33:47,894           already explicitly excluding 'moleculekit.share.atomselect' via
2024-03-01T15:33:47,894           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,895           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,896           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,897           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,898           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,899           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,899                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,900                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,900                 directory, all directories are treated like packages.
2024-03-01T15:33:47,901           ********************************************************************************

2024-03-01T15:33:47,902   !!
2024-03-01T15:33:47,903     check.warn(importable)
2024-03-01T15:33:47,903   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-03-01T15:33:47,904   !!

2024-03-01T15:33:47,905           ********************************************************************************
2024-03-01T15:33:47,905           ############################
2024-03-01T15:33:47,906           # Package would be ignored #
2024-03-01T15:33:47,907           ############################
2024-03-01T15:33:47,907           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-03-01T15:33:47,908           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,909           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,909           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-03-01T15:33:47,910           to the `packages` configuration field.

2024-03-01T15:33:47,911           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,912           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,912           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,914           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,958           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,959           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-03-01T15:33:47,959           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-03-01T15:33:47,960           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,961           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,961           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,962           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,964           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,966           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,967                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,967                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,968                 directory, all directories are treated like packages.
2024-03-01T15:33:47,969           ********************************************************************************

2024-03-01T15:33:47,971   !!
2024-03-01T15:33:47,971     check.warn(importable)
2024-03-01T15:33:47,972   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-03-01T15:33:47,973   !!

2024-03-01T15:33:47,975           ********************************************************************************
2024-03-01T15:33:47,975           ############################
2024-03-01T15:33:47,976           # Package would be ignored #
2024-03-01T15:33:47,976           ############################
2024-03-01T15:33:47,977           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-03-01T15:33:47,977           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,978           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:47,978           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-03-01T15:33:47,979           to the `packages` configuration field.

2024-03-01T15:33:47,980           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:47,981           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:47,981           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:47,982           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:47,983           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:47,984           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-03-01T15:33:47,985           already explicitly excluding 'moleculekit.tmalign' via
2024-03-01T15:33:47,985           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:47,986           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:47,987           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:47,987           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:47,988           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:47,990           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:47,990                 even if it does not contain any `.py` files.
2024-03-01T15:33:47,991                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:47,991                 directory, all directories are treated like packages.
2024-03-01T15:33:47,992           ********************************************************************************

2024-03-01T15:33:47,993   !!
2024-03-01T15:33:47,994     check.warn(importable)
2024-03-01T15:33:47,994   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-03-01T15:33:47,995   !!

2024-03-01T15:33:47,995           ********************************************************************************
2024-03-01T15:33:47,996           ############################
2024-03-01T15:33:47,996           # Package would be ignored #
2024-03-01T15:33:47,997           ############################
2024-03-01T15:33:47,998           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-03-01T15:33:47,998           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:47,999           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:48,000           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-03-01T15:33:48,000           to the `packages` configuration field.

2024-03-01T15:33:48,001           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:48,002           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:48,002           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:48,003           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:48,004           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:48,005           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-03-01T15:33:48,006           already explicitly excluding 'moleculekit.tmalign.include' via
2024-03-01T15:33:48,006           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:48,007           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:48,007           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:48,008           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:48,010           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:48,011           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:48,012                 even if it does not contain any `.py` files.
2024-03-01T15:33:48,012                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:48,013                 directory, all directories are treated like packages.
2024-03-01T15:33:48,013           ********************************************************************************

2024-03-01T15:33:48,014   !!
2024-03-01T15:33:48,015     check.warn(importable)
2024-03-01T15:33:48,015   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-03-01T15:33:48,016   !!

2024-03-01T15:33:48,017           ********************************************************************************
2024-03-01T15:33:48,017           ############################
2024-03-01T15:33:48,018           # Package would be ignored #
2024-03-01T15:33:48,018           ############################
2024-03-01T15:33:48,019           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-03-01T15:33:48,019           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:48,020           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:48,021           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-03-01T15:33:48,022           to the `packages` configuration field.

2024-03-01T15:33:48,023           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:48,023           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:48,024           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:48,025           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:48,026           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:48,027           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-03-01T15:33:48,028           already explicitly excluding 'moleculekit.tmalign.src' via
2024-03-01T15:33:48,029           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:48,029           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:48,030           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:48,031           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:48,032           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:48,034           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:48,034                 even if it does not contain any `.py` files.
2024-03-01T15:33:48,035                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:48,035                 directory, all directories are treated like packages.
2024-03-01T15:33:48,036           ********************************************************************************

2024-03-01T15:33:48,037   !!
2024-03-01T15:33:48,037     check.warn(importable)
2024-03-01T15:33:48,038   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-03-01T15:33:48,039   !!

2024-03-01T15:33:48,040           ********************************************************************************
2024-03-01T15:33:48,040           ############################
2024-03-01T15:33:48,041           # Package would be ignored #
2024-03-01T15:33:48,041           ############################
2024-03-01T15:33:48,042           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-03-01T15:33:48,042           but it is absent from setuptools' `packages` configuration.

2024-03-01T15:33:48,043           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T15:33:48,044           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-03-01T15:33:48,044           to the `packages` configuration field.

2024-03-01T15:33:48,046           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T15:33:48,046           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T15:33:48,047           instead of `find_packages(...)`/`find:`).

2024-03-01T15:33:48,048           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T15:33:48,049           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T15:33:48,049           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-03-01T15:33:48,050           already explicitly excluding 'moleculekit.wrapping' via
2024-03-01T15:33:48,050           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T15:33:48,051           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T15:33:48,051           combination with a more fine grained `package-data` configuration.

2024-03-01T15:33:48,052           You can read more about "package data files" on setuptools documentation page:

2024-03-01T15:33:48,053           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T15:33:48,055           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T15:33:48,055                 even if it does not contain any `.py` files.
2024-03-01T15:33:48,056                 On the other hand, currently there is no concept of package data
2024-03-01T15:33:48,056                 directory, all directories are treated like packages.
2024-03-01T15:33:48,057           ********************************************************************************

2024-03-01T15:33:48,058   !!
2024-03-01T15:33:48,058     check.warn(importable)
2024-03-01T15:33:48,059   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:48,060   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:48,060   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-01T15:33:48,061   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-01T15:33:48,061   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-01T15:33:48,062   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-01T15:33:48,062   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-01T15:33:48,063   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-01T15:33:48,064   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-01T15:33:48,064   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-01T15:33:48,064   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-01T15:33:48,065   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-01T15:33:48,065   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-01T15:33:48,066   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-01T15:33:48,066   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-01T15:33:48,067   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-01T15:33:48,067   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-01T15:33:48,068   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-01T15:33:48,068   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-01T15:33:48,069   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-01T15:33:48,069   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-01T15:33:48,070   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-03-01T15:33:48,070   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-03-01T15:33:48,071   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-03-01T15:33:48,072   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,072   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,072   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,073   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,073   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,074   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,075   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,075   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,076   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,076   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,077   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,078   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,078   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,079   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,079   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,080   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,080   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,081   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,081   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,082   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,082   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,083   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,083   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,084   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,084   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,085   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,085   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,086   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,087   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,087   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,088   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,088   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,089   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,089   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,090   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,090   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,091   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,091   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,092   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,092   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,093   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,094   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,094   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,095   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,095   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,096   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,096   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,097   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,097   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,098   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,098   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,099   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,099   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,100   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,100   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,101   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,101   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,102   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,102   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,103   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,103   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,104   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,104   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,105   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,105   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,106   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,107   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,107   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,108   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,108   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,109   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,110   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,110   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,111   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,111   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,112   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,112   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,113   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,113   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,114   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,114   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,115   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,116   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,116   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,117   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,120   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,123   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,125   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,129   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,133   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,137   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,141   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,144   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,147   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,150   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,152   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,156   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,159   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,163   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,165   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,167   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,169   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,172   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,174   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,177   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,180   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,182   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,185   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,187   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,190   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,192   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,194   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,198   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,200   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,203   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,205   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,208   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,211   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,214   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,216   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,219   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,222   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,224   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,227   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,229   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,231   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,234   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,236   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,239   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,242   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,245   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,247   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,250   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,252   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,255   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,257   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,259   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,261   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,263   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,265   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,267   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,269   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,271   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,273   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,275   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,277   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,279   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,281   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,284   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,286   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,288   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,290   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,292   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,294   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,296   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,298   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,300   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,302   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,304   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,307   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,309   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,311   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,314   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,316   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,318   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,320   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,322   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,324   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,326   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,329   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,331   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,333   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,335   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,338   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,340   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,342   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-01T15:33:48,344   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-01T15:33:48,345   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-01T15:33:48,369   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-01T15:33:48,371   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-01T15:33:48,373   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-03-01T15:33:48,374   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-03-01T15:33:48,376   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-01T15:33:48,377   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-01T15:33:48,383   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-01T15:33:48,384   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-01T15:33:48,414   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-01T15:33:48,416   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-01T15:33:48,417   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-01T15:33:48,442   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-01T15:33:48,444   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-01T15:33:48,445   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-01T15:33:48,484   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-01T15:33:48,489   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-01T15:33:48,491   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-01T15:33:48,792   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-01T15:33:48,796   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-01T15:33:48,798   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-01T15:33:48,857   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-01T15:33:48,861   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-01T15:33:48,862   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-01T15:33:48,894   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-01T15:33:48,898   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-01T15:33:48,901   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-01T15:33:48,903   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-01T15:33:48,908   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-01T15:33:49,128   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-01T15:33:49,131   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-01T15:33:49,133   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-01T15:33:49,136   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-01T15:33:49,137   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-01T15:33:49,158   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-01T15:33:49,161   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-01T15:33:49,163   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-01T15:33:49,164   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-01T15:33:49,167   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-01T15:33:49,170   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-01T15:33:49,173   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-01T15:33:49,176   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-01T15:33:49,181   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-01T15:33:49,183   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-01T15:33:49,189   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,192   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,234   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,239   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,242   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,244   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,282   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,286   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:33:49,291   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,292   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,295   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,299   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,302   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,305   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,308   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-01T15:33:49,311   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:33:49,313   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:33:49,317   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:33:49,538   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:33:49,541   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:33:49,543   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:33:49,555   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-03-01T15:33:49,556   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.26'
2024-03-01T15:33:49,556   running build_ext
2024-03-01T15:33:49,566   building 'moleculekit.interactions.hbonds' extension
2024-03-01T15:33:49,567   creating build/temp.linux-armv7l-cpython-311
2024-03-01T15:33:49,568   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-03-01T15:33:49,569   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-01T15:33:49,570   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-01T15:33:49,571   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-03-01T15:33:50,188   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:33:50,188                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:33:50,189                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:33:50,190                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-03-01T15:33:50,190   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:33:50,191      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:33:50,192         |  ^~~~~~~
2024-03-01T15:34:18,480   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-03-01T15:34:18,480       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19971:68:
2024-03-01T15:34:18,481   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:34:18,482   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-03-01T15:34:18,482         |                                                    ^~~~~~~~~~~~~~~
2024-03-01T15:34:18,483   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-01T15:34:18,484   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-03-01T15:34:18,484   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-03-01T15:34:18,485         |                                                         ^~~~~~~~~~~~~~~
2024-03-01T15:34:21,507   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:34:21,796   building 'moleculekit.interactions.pipi' extension
2024-03-01T15:34:21,797   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-01T15:34:21,797   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-03-01T15:34:22,105   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:34:22,105                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:34:22,106                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:34:22,106                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-03-01T15:34:22,107   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:34:22,107      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:34:22,108         |  ^~~~~~~
2024-03-01T15:34:55,128   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:34:55,413   building 'moleculekit.interactions.cationpi' extension
2024-03-01T15:34:55,414   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-01T15:34:55,414   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-03-01T15:34:55,722   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:34:55,723                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:34:55,723                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:34:55,724                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-03-01T15:34:55,724   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:34:55,725      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:34:55,726         |  ^~~~~~~
2024-03-01T15:35:28,082   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:35:28,371   building 'moleculekit.interactions.sigmahole' extension
2024-03-01T15:35:28,372   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-01T15:35:28,374   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-03-01T15:35:28,714   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:35:28,715                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:35:28,715                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:35:28,716                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-03-01T15:35:28,716   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:35:28,717      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:35:28,717         |  ^~~~~~~
2024-03-01T15:36:00,719   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:36:01,013   building 'moleculekit.wrapping' extension
2024-03-01T15:36:01,014   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-01T15:36:01,015   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-03-01T15:36:01,346   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:36:01,347                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:36:01,347                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:36:01,348                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-03-01T15:36:01,349   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:36:01,349      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:36:01,350         |  ^~~~~~~
2024-03-01T15:36:33,243   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:36:33,482   building 'moleculekit.bondguesser_utils' extension
2024-03-01T15:36:33,483   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-01T15:36:33,484   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-03-01T15:36:33,870   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:36:33,871                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:36:33,871                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:36:33,872                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-03-01T15:36:33,873   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:36:33,873      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:36:33,874         |  ^~~~~~~
2024-03-01T15:36:36,212   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-03-01T15:36:36,214   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-01T15:36:36,216   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-01T15:36:36,218         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T15:36:36,220   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-01T15:36:36,222   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-01T15:36:36,223         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T15:36:36,225   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-01T15:36:36,227   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-03-01T15:36:36,229         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T15:36:36,231   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,234   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T15:36:36,235         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,237   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,239   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T15:36:36,242         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,244   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,246   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,248         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,252   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,254   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T15:36:36,257         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,259   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,261   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T15:36:36,263         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,265   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,268   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T15:36:36,270         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,272   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,274   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,276         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,278   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,280   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T15:36:36,282         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,285   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,287   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,288         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,291   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,293   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T15:36:36,295         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,297   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,299   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,301         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,303   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,306   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,307         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,309   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,311   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T15:36:36,313         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,316   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,318   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T15:36:36,322         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,324   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,326   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,328         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,329   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,331   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T15:36:36,333         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,335   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,337   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,339         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,341   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,343   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T15:36:36,345         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,347   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,348   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,348         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,349   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T15:36:36,349   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T15:36:36,350         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,351   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-03-01T15:36:36,352   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:36:36,353   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-03-01T15:36:36,354         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-03-01T15:36:36,355   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:36:36,356   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-03-01T15:36:36,356         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-01T15:37:07,836   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:37:08,164   building 'moleculekit.atomselect_utils' extension
2024-03-01T15:37:08,166   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-01T15:37:08,166   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-03-01T15:37:08,499   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:37:08,499                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:37:08,500                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:37:08,500                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-03-01T15:37:08,501   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:37:08,501      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:37:08,502         |  ^~~~~~~
2024-03-01T15:37:12,914   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-03-01T15:37:12,915   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:37:12,916   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-03-01T15:37:12,917         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-01T15:37:12,922   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-01T15:37:12,922   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:37:12,923   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-01T15:37:12,924         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T15:37:12,929   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-01T15:37:12,930   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:37:12,932   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-01T15:37:12,933         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T15:37:47,180   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:37:47,476   building 'moleculekit.distance_utils' extension
2024-03-01T15:37:47,476   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-01T15:37:47,477   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-03-01T15:37:47,783   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:37:47,784                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:37:47,784                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:37:47,785                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-03-01T15:37:47,785   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:37:47,786      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:37:47,787         |  ^~~~~~~
2024-03-01T15:37:50,498   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-03-01T15:37:50,542   moleculekit/distance_utils/distance_utils.cpp:21341:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:37:50,543   21341 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-01T15:37:50,544         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T15:37:50,545   moleculekit/distance_utils/distance_utils.cpp:21353:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T15:37:50,546   21353 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-01T15:37:50,605         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T15:38:28,016   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:38:28,362   building 'moleculekit.occupancy_utils' extension
2024-03-01T15:38:28,363   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-01T15:38:28,364   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-03-01T15:38:29,667   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:38:29,667                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:38:29,668                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:38:29,669                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-03-01T15:38:29,670   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:38:29,670      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:38:29,671         |  ^~~~~~~
2024-03-01T15:38:58,450   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:38:58,652   building 'moleculekit.cython_utils' extension
2024-03-01T15:38:58,653   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-01T15:38:58,653   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-03-01T15:38:59,014   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:38:59,015                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:38:59,016                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:38:59,017                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-03-01T15:38:59,017   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:38:59,018      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:38:59,018         |  ^~~~~~~
2024-03-01T15:39:28,911   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:39:29,190   building 'moleculekit.xtc' extension
2024-03-01T15:39:29,191   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-01T15:39:29,192   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-01T15:39:29,193   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-01T15:39:29,194   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-01T15:39:29,840   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,841      66 |         "OK",
2024-03-01T15:39:29,841         |         ^~~~
2024-03-01T15:39:29,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,842      67 |         "Header",
2024-03-01T15:39:29,843         |         ^~~~~~~~
2024-03-01T15:39:29,843   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,844      68 |         "String",
2024-03-01T15:39:29,845         |         ^~~~~~~~
2024-03-01T15:39:29,845   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,846      69 |         "Double",
2024-03-01T15:39:29,846         |         ^~~~~~~~
2024-03-01T15:39:29,847   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,847      70 |         "Integer",
2024-03-01T15:39:29,848         |         ^~~~~~~~~
2024-03-01T15:39:29,849   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,849      71 |         "Float",
2024-03-01T15:39:29,850         |         ^~~~~~~
2024-03-01T15:39:29,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,851      72 |         "Unsigned integer",
2024-03-01T15:39:29,852         |         ^~~~~~~~~~~~~~~~~~
2024-03-01T15:39:29,853   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,853      73 |         "Compressed 3D coordinate",
2024-03-01T15:39:29,854         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:39:29,855   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,856      74 |         "Closing file",
2024-03-01T15:39:29,856         |         ^~~~~~~~~~~~~~
2024-03-01T15:39:29,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,858      75 |         "Magic number",
2024-03-01T15:39:29,858         |         ^~~~~~~~~~~~~~
2024-03-01T15:39:29,859   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,860      76 |         "Not enough memory",
2024-03-01T15:39:29,860         |         ^~~~~~~~~~~~~~~~~~~
2024-03-01T15:39:29,861   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,862      77 |         "End of file",
2024-03-01T15:39:29,862         |         ^~~~~~~~~~~~~
2024-03-01T15:39:29,863   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:39:29,864      78 |         "File not found"
2024-03-01T15:39:29,864         |         ^~~~~~~~~~~~~~~~
2024-03-01T15:39:29,865   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-01T15:39:29,866   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,866     459 |     while (size >= num && num_of_bits < 32)
2024-03-01T15:39:29,867         |            ~~~~~^~~~~~
2024-03-01T15:39:29,867   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-01T15:39:29,868   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,868     505 |     while (bytes[num_of_bytes] >= num)
2024-03-01T15:39:29,869         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T15:39:29,869   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-01T15:39:29,870   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,870     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-01T15:39:29,871         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-01T15:39:29,872   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,872     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-03-01T15:39:29,873         |                             ~~^~~~~~~~~~~~~~
2024-03-01T15:39:29,874   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,874     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-03-01T15:39:29,875         |                             ~~^~~~~~~~~~~~~~~~
2024-03-01T15:39:29,876   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-01T15:39:29,876   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,877     664 |                 if (lastbits < num_of_bits)
2024-03-01T15:39:29,878         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-03-01T15:39:29,878   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-01T15:39:29,879   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,880     785 |         if(size3>xfp->buf1size)
2024-03-01T15:39:29,880         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:39:29,881   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,882     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:39:29,882         |                          ^
2024-03-01T15:39:29,883   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,884     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:39:29,884         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:39:29,885   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,886     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:39:29,886         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:39:29,887   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,887     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:39:29,888         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:39:29,888   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,889     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:39:29,889         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:39:29,890   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,891     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:39:29,891         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:39:29,892   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,892     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:39:29,893         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:39:29,893   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:39:29,894     756 |         int smallidx,  minidx, maxidx;
2024-03-01T15:39:29,894         |                        ^~~~~~
2024-03-01T15:39:29,895   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:39:29,895     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T15:39:29,896         |                                ^~~~~~
2024-03-01T15:39:29,897   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T15:39:29,897     763 |         int errval=1;
2024-03-01T15:39:29,898         |             ^~~~~~
2024-03-01T15:39:29,898   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-01T15:39:29,899   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,900    1011 |         if(size3>xfp->buf1size)
2024-03-01T15:39:29,900         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:39:29,901   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,901    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T15:39:29,902         |                                 ~~~~~~~~^~~~~~~
2024-03-01T15:39:29,903   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,903    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T15:39:29,904         |                           ~~~~~~~~^~~~~~~
2024-03-01T15:39:29,905   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,905    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T15:39:29,906         |                           ~~~~~~~~^~~~~~~
2024-03-01T15:39:29,907   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,907    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-01T15:39:29,908         |                         ^
2024-03-01T15:39:29,908   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,909    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:39:29,909         |                          ^
2024-03-01T15:39:29,910   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,910    1275 |         if(tmp==(unsigned int)buf2[0])
2024-03-01T15:39:29,911         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:39:29,911   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:39:29,912    1001 |         int errval;
2024-03-01T15:39:29,913         |             ^~~~~~
2024-03-01T15:39:29,913   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-01T15:39:29,914   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,914    1316 |         if(size3>xfp->buf1size)
2024-03-01T15:39:29,915         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:39:29,916   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,916    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:39:29,917         |                          ^
2024-03-01T15:39:29,918   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:39:29,918    1289 |         int smallidx,  maxidx, minidx;
2024-03-01T15:39:29,919         |                                ^~~~~~
2024-03-01T15:39:29,920   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:39:29,920    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T15:39:29,921         |                                ^~~~~~
2024-03-01T15:39:29,921   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T15:39:29,922    1297 |         int errval=1;
2024-03-01T15:39:29,923         |             ^~~~~~
2024-03-01T15:39:29,923   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-01T15:39:29,924   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,925    1513 |         if(size3>xfp->buf1size) {
2024-03-01T15:39:29,925         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:39:29,926   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,926    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-01T15:39:29,927         |                         ^
2024-03-01T15:39:29,928   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:29,928    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:39:29,929         |                          ^
2024-03-01T15:39:29,929   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:39:29,930    1743 |         if(tmp==(unsigned int)buf2[0])
2024-03-01T15:39:29,930         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:39:29,931   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:39:29,931    1504 |         int errval=1;
2024-03-01T15:39:29,932         |             ^~~~~~
2024-03-01T15:39:32,764   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-03-01T15:39:33,030   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-03-01T15:39:33,806   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-03-01T15:39:33,807   moleculekit/fileformats/xtc/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:33,807     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-03-01T15:39:33,808         |                                ~~~~~^~~~~~~~
2024-03-01T15:39:33,809   moleculekit/fileformats/xtc/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-01T15:39:33,810     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-03-01T15:39:33,811         |             ^~~
2024-03-01T15:39:33,817   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-03-01T15:39:33,818   moleculekit/fileformats/xtc/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-01T15:39:33,818     418 |         int nf3 = nframes * 3;
2024-03-01T15:39:33,819         |             ^~~
2024-03-01T15:39:33,821   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-03-01T15:39:33,821   moleculekit/fileformats/xtc/src/xtc.cpp:548:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:33,822     548 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-03-01T15:39:33,823         |                                        ~~~~~^~~~~~~~
2024-03-01T15:39:33,825   moleculekit/fileformats/xtc/src/xtc.cpp:617:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:39:33,825     617 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-03-01T15:39:33,826         |                                        ~~~~~^~~~~~~~
2024-03-01T15:39:33,827   moleculekit/fileformats/xtc/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-03-01T15:39:33,828     491 |         int reading_index = 0;
2024-03-01T15:39:33,828         |             ^~~~~~~~~~~~~
2024-03-01T15:39:33,829   moleculekit/fileformats/xtc/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-03-01T15:39:33,829     492 |         int writing_index = 0;
2024-03-01T15:39:33,830         |             ^~~~~~~~~~~~~
2024-03-01T15:39:34,731   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-03-01T15:39:35,043   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:39:35,044                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:39:35,045                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:39:35,045                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-03-01T15:39:35,046   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:39:35,046      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:39:35,047         |  ^~~~~~~
2024-03-01T15:39:59,114   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:39:59,404   building 'moleculekit.trr' extension
2024-03-01T15:39:59,406   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-03-01T15:39:59,519   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-01T15:40:00,156   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,156      66 |         "OK",
2024-03-01T15:40:00,157         |         ^~~~
2024-03-01T15:40:00,158   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,158      67 |         "Header",
2024-03-01T15:40:00,159         |         ^~~~~~~~
2024-03-01T15:40:00,160   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,160      68 |         "String",
2024-03-01T15:40:00,161         |         ^~~~~~~~
2024-03-01T15:40:00,161   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,162      69 |         "Double",
2024-03-01T15:40:00,162         |         ^~~~~~~~
2024-03-01T15:40:00,162   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,163      70 |         "Integer",
2024-03-01T15:40:00,163         |         ^~~~~~~~~
2024-03-01T15:40:00,164   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,164      71 |         "Float",
2024-03-01T15:40:00,165         |         ^~~~~~~
2024-03-01T15:40:00,165   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,166      72 |         "Unsigned integer",
2024-03-01T15:40:00,166         |         ^~~~~~~~~~~~~~~~~~
2024-03-01T15:40:00,167   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,168      73 |         "Compressed 3D coordinate",
2024-03-01T15:40:00,168         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:00,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,169      74 |         "Closing file",
2024-03-01T15:40:00,170         |         ^~~~~~~~~~~~~~
2024-03-01T15:40:00,170   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,171      75 |         "Magic number",
2024-03-01T15:40:00,171         |         ^~~~~~~~~~~~~~
2024-03-01T15:40:00,172   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,173      76 |         "Not enough memory",
2024-03-01T15:40:00,173         |         ^~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:00,174   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,175      77 |         "End of file",
2024-03-01T15:40:00,176         |         ^~~~~~~~~~~~~
2024-03-01T15:40:00,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T15:40:00,177      78 |         "File not found"
2024-03-01T15:40:00,177         |         ^~~~~~~~~~~~~~~~
2024-03-01T15:40:00,186   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-01T15:40:00,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,188     459 |     while (size >= num && num_of_bits < 32)
2024-03-01T15:40:00,188         |            ~~~~~^~~~~~
2024-03-01T15:40:00,189   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-01T15:40:00,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,191     505 |     while (bytes[num_of_bytes] >= num)
2024-03-01T15:40:00,191         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T15:40:00,193   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-01T15:40:00,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,194     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-01T15:40:00,194         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:00,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,195     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-03-01T15:40:00,196         |                             ~~^~~~~~~~~~~~~~
2024-03-01T15:40:00,196   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,197     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-03-01T15:40:00,197         |                             ~~^~~~~~~~~~~~~~~~
2024-03-01T15:40:00,198   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-01T15:40:00,199   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,199     664 |                 if (lastbits < num_of_bits)
2024-03-01T15:40:00,200         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-03-01T15:40:00,202   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-01T15:40:00,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,204     785 |         if(size3>xfp->buf1size)
2024-03-01T15:40:00,205         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:40:00,206   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,207     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:40:00,207         |                          ^
2024-03-01T15:40:00,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,211     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:40:00,212         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:40:00,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,213     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:40:00,214         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:40:00,214   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,215     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:40:00,215         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:40:00,216   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,217     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:40:00,218         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:40:00,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,219     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:40:00,220         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:40:00,220   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,221     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-01T15:40:00,221         |                                    ~~~~~~~~~^~~~~~~~
2024-03-01T15:40:00,222   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:40:00,222     756 |         int smallidx,  minidx, maxidx;
2024-03-01T15:40:00,223         |                        ^~~~~~
2024-03-01T15:40:00,223   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:40:00,224     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T15:40:00,225         |                                ^~~~~~
2024-03-01T15:40:00,225   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T15:40:00,226     763 |         int errval=1;
2024-03-01T15:40:00,226         |             ^~~~~~
2024-03-01T15:40:00,227   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-01T15:40:00,228   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,228    1011 |         if(size3>xfp->buf1size)
2024-03-01T15:40:00,229         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:40:00,230   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,230    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T15:40:00,231         |                                 ~~~~~~~~^~~~~~~
2024-03-01T15:40:00,232   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,232    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T15:40:00,233         |                           ~~~~~~~~^~~~~~~
2024-03-01T15:40:00,233   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,234    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T15:40:00,235         |                           ~~~~~~~~^~~~~~~
2024-03-01T15:40:00,235   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,236    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-01T15:40:00,236         |                         ^
2024-03-01T15:40:00,237   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,238    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:40:00,238         |                          ^
2024-03-01T15:40:00,239   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,240    1275 |         if(tmp==(unsigned int)buf2[0])
2024-03-01T15:40:00,241         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:00,241   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:40:00,242    1001 |         int errval;
2024-03-01T15:40:00,242         |             ^~~~~~
2024-03-01T15:40:00,244   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-01T15:40:00,244   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,245    1316 |         if(size3>xfp->buf1size)
2024-03-01T15:40:00,245         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:40:00,247   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,248    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:40:00,248         |                          ^
2024-03-01T15:40:00,252   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:40:00,252    1289 |         int smallidx,  maxidx, minidx;
2024-03-01T15:40:00,253         |                                ^~~~~~
2024-03-01T15:40:00,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:40:00,254    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T15:40:00,255         |                                ^~~~~~
2024-03-01T15:40:00,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T15:40:00,256    1297 |         int errval=1;
2024-03-01T15:40:00,256         |             ^~~~~~
2024-03-01T15:40:00,257   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-01T15:40:00,258   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,258    1513 |         if(size3>xfp->buf1size) {
2024-03-01T15:40:00,259         |            ~~~~~^~~~~~~~~~~~~~
2024-03-01T15:40:00,262   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,263    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-01T15:40:00,264         |                         ^
2024-03-01T15:40:00,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:40:00,265    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T15:40:00,265         |                          ^
2024-03-01T15:40:00,269   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:40:00,269    1743 |         if(tmp==(unsigned int)buf2[0])
2024-03-01T15:40:00,270         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:00,271   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T15:40:00,271    1504 |         int errval=1;
2024-03-01T15:40:00,272         |             ^~~~~~
2024-03-01T15:40:03,113   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-03-01T15:40:03,215   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-03-01T15:40:03,216   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-01T15:40:03,217     111 |         if (slen != strlen(version)+1)
2024-03-01T15:40:03,217         |                  ^~
2024-03-01T15:40:03,218   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-01T15:40:03,218     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-03-01T15:40:03,219         |                                              ^~
2024-03-01T15:40:03,929   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-03-01T15:40:04,313   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:40:04,314                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:40:04,315                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:40:04,316                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-03-01T15:40:04,316   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:40:04,317      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:40:04,317         |  ^~~~~~~
2024-03-01T15:40:05,121   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-03-01T15:40:05,136   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-01T15:40:05,136   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-03-01T15:40:05,137         |                                     ^~
2024-03-01T15:40:28,490   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-03-01T15:40:28,490   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:28,491    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-01T15:40:28,491         |                                        ^~~~~~~~~~~~~~~
2024-03-01T15:40:28,504   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-03-01T15:40:28,505   14242 |   int __pyx_v_status;
2024-03-01T15:40:28,506         |       ^~~~~~~~~~~~~~
2024-03-01T15:40:40,186   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-03-01T15:40:40,197   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,198   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-01T15:40:40,199         |                   ^
2024-03-01T15:40:40,207   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-03-01T15:40:40,208   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-01T15:40:40,208         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,218   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,219   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T15:40:40,219         |                   ^
2024-03-01T15:40:40,228   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-03-01T15:40:40,229   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-01T15:40:40,229         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,230   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,231    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-01T15:40:40,231         |                                                                                               ^
2024-03-01T15:40:40,240   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-03-01T15:40:40,241   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-01T15:40:40,241         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,251   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,252   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-03-01T15:40:40,252         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T15:40:40,261   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-03-01T15:40:40,262   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-01T15:40:40,262         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,272   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,272   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-01T15:40:40,273         |                   ^
2024-03-01T15:40:40,282   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-03-01T15:40:40,282   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-01T15:40:40,283         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,292   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,293   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T15:40:40,294         |                   ^
2024-03-01T15:40:40,302   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-03-01T15:40:40,303   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-01T15:40:40,304         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,304   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,305    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-01T15:40:40,306         |                                                                                               ^
2024-03-01T15:40:40,314   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-03-01T15:40:40,315   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-01T15:40:40,315         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,325   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,326   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-03-01T15:40:40,327         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T15:40:40,335   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-03-01T15:40:40,336   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-01T15:40:40,337         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,347   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,347   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T15:40:40,348         |                 ^
2024-03-01T15:40:40,357   moleculekit/fileformats/xtc/trr.c:10095:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-03-01T15:40:40,357   10095 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-03-01T15:40:40,358         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,368   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,369   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-01T15:40:40,369         |                 ^
2024-03-01T15:40:40,378   moleculekit/fileformats/xtc/trr.c:10095:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-03-01T15:40:40,379   10095 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-03-01T15:40:40,379         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,389   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,390   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T15:40:40,391         |                   ^
2024-03-01T15:40:40,399   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-03-01T15:40:40,400   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-03-01T15:40:40,401         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,410   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,411   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-01T15:40:40,412         |                   ^
2024-03-01T15:40:40,421   moleculekit/fileformats/xtc/trr.c:10091:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-03-01T15:40:40,421   10091 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-03-01T15:40:40,422         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,432   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,432   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T15:40:40,433         |                   ^
2024-03-01T15:40:40,442   moleculekit/fileformats/xtc/trr.c:10075:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-03-01T15:40:40,442   10075 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-03-01T15:40:40,443         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:40,453   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:40:40,453   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-01T15:40:40,454         |                   ^
2024-03-01T15:40:40,463   moleculekit/fileformats/xtc/trr.c:10075:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-03-01T15:40:40,464   10075 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-03-01T15:40:40,464         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T15:40:47,002   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:40:47,157   building 'moleculekit.dcd' extension
2024-03-01T15:40:47,158   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-01T15:40:47,159   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-01T15:40:47,160   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-03-01T15:40:47,551   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:40:47,552                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:40:47,552                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:40:47,553                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-03-01T15:40:47,553   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:40:47,554      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:40:47,555         |  ^~~~~~~
2024-03-01T15:40:48,836   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-03-01T15:40:48,836                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-03-01T15:40:48,837   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,838     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-01T15:40:48,839         |            ^~~~~~~~~~~~~
2024-03-01T15:40:48,839   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,840     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-01T15:40:48,841         |            ^~~~~~~~~~~~~~
2024-03-01T15:40:48,841   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,842     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-03-01T15:40:48,842         |            ^~~~~~~~~~~~~~~
2024-03-01T15:40:48,843   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,843     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-03-01T15:40:48,844         |                   ^~~~~~~~~
2024-03-01T15:40:48,844   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,845     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-03-01T15:40:48,845         |                   ^~~~~~~~~
2024-03-01T15:40:48,846   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,846     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-03-01T15:40:48,847         |                   ^~~~~~~~~
2024-03-01T15:40:48,848   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,848     394 | static int fio_fclose(fio_fd fd) {
2024-03-01T15:40:48,849         |            ^~~~~~~~~~
2024-03-01T15:40:48,850   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-03-01T15:40:48,851     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-03-01T15:40:48,851         |            ^~~~~~~~
2024-03-01T15:41:03,276   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-03-01T15:41:03,276   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:41:03,277    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-01T15:41:03,278         |                                        ^~~~~~~~~~~~~~~
2024-03-01T15:41:03,284   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-03-01T15:41:03,285    8004 |   int __pyx_v_i;
2024-03-01T15:41:03,286         |       ^~~~~~~~~
2024-03-01T15:41:06,656   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-03-01T15:41:06,874   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-03-01T15:41:06,875   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:41:06,875     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-01T15:41:06,876         |                                                       ^~
2024-03-01T15:41:06,877   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:41:06,877     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-01T15:41:06,878         |                                                      ^~
2024-03-01T15:41:06,879   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:41:06,880     194 |     if (input_integer[0] != dcdcordmagic)
2024-03-01T15:41:06,880         |                          ^~
2024-03-01T15:41:06,881   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:41:06,881     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-01T15:41:06,882         |                                               ^~
2024-03-01T15:41:06,882   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T15:41:06,883     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-01T15:41:06,883         |                                               ^~
2024-03-01T15:41:06,886   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-03-01T15:41:06,887   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:41:06,888     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-03-01T15:41:06,888         |                       ^~
2024-03-01T15:41:06,889   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T15:41:06,889     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-03-01T15:41:06,890         |                                                 ^~
2024-03-01T15:41:06,916   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-03-01T15:41:06,917   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-03-01T15:41:06,918   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-03-01T15:41:06,918      96 | static void swap2_aligned(void *v, long ndata) {
2024-03-01T15:41:06,919         |             ^~~~~~~~~~~~~
2024-03-01T15:41:06,920   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-03-01T15:41:06,920      32 | static void swap2_unaligned(void *v, long ndata) {
2024-03-01T15:41:06,921         |             ^~~~~~~~~~~~~~~
2024-03-01T15:41:06,922   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-03-01T15:41:06,922   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-01T15:41:06,923     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-01T15:41:06,924         |            ^~~~~~~~~~~~~
2024-03-01T15:41:06,924   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-01T15:41:06,925     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-01T15:41:06,926         |            ^~~~~~~~~~~~~~
2024-03-01T15:41:08,204   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:41:08,330   building 'moleculekit.binpos' extension
2024-03-01T15:41:08,331   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-01T15:41:08,332   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-01T15:41:08,333   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-03-01T15:41:08,722   In file included from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T15:41:08,722                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T15:41:08,723                    from /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T15:41:08,723                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-03-01T15:41:08,724   /tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T15:41:08,724      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T15:41:08,725         |  ^~~~~~~
2024-03-01T15:41:23,202   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-03-01T15:41:23,203       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7486:13:
2024-03-01T15:41:23,209   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:41:23,210    8027 |   if (__pyx_t_1) {
2024-03-01T15:41:23,211         |      ^
2024-03-01T15:41:23,211   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-03-01T15:41:23,217   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-03-01T15:41:23,217    7504 |   int __pyx_v_status;
2024-03-01T15:41:23,218         |       ^~~~~~~~~~~~~~
2024-03-01T15:41:23,219   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-01T15:41:23,219    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-01T15:41:23,220         |                                        ^~~~~~~~~~~~~~~
2024-03-01T15:41:23,225   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-03-01T15:41:23,226    7501 |   int __pyx_v_i;
2024-03-01T15:41:23,226         |       ^~~~~~~~~
2024-03-01T15:41:26,700   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-03-01T15:41:27,031   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:41:27,155   building 'moleculekit.tmalign' extension
2024-03-01T15:41:27,156   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-01T15:41:27,157   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-01T15:41:27,158   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-03-01T15:42:01,074   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-56tjx_ps/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-03-01T15:42:23,640   In file included from /usr/include/c++/12/vector:70,
2024-03-01T15:42:23,641                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-03-01T15:42:23,642   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-03-01T15:42:23,642   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-03-01T15:42:23,643     439 |       vector<_Tp, _Alloc>::
2024-03-01T15:42:23,643         |       ^~~~~~~~~~~~~~~~~~~
2024-03-01T15:42:24,447   In file included from /usr/include/c++/12/vector:64:
2024-03-01T15:42:24,448   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-01T15:42:24,449       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20761:32,
2024-03-01T15:42:24,449       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-03-01T15:42:24,450   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-01T15:42:24,451    1287 |           _M_realloc_insert(end(), __x);
2024-03-01T15:42:24,451         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T15:42:24,452   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-01T15:42:24,453       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20775:33,
2024-03-01T15:42:24,453       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-03-01T15:42:24,454   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-01T15:42:24,455    1287 |           _M_realloc_insert(end(), __x);
2024-03-01T15:42:24,455         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T15:42:24,456   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-01T15:42:24,457       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20860:34,
2024-03-01T15:42:24,457       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20246:52:
2024-03-01T15:42:24,458   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-01T15:42:24,459    1287 |           _M_realloc_insert(end(), __x);
2024-03-01T15:42:24,459         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T15:42:26,826   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-03-01T15:42:27,217   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-03-01T15:42:27,217   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.26'
2024-03-01T15:42:27,218   installing to build/bdist.linux-armv7l/wheel
2024-03-01T15:42:27,218   running install
2024-03-01T15:42:27,241   running install_lib
2024-03-01T15:42:27,246   creating build/bdist.linux-armv7l
2024-03-01T15:42:27,247   creating build/bdist.linux-armv7l/wheel
2024-03-01T15:42:27,249   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,250   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T15:42:27,251   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T15:42:27,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T15:42:27,257   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T15:42:27,259   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,260   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,263   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,265   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,268   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,270   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T15:42:27,275   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T15:42:27,276   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T15:42:27,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T15:42:27,280   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T15:42:27,282   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T15:42:27,285   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,288   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-01T15:42:27,289   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-01T15:42:27,291   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-01T15:42:27,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,321   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,324   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T15:42:27,326   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-03-01T15:42:27,330   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,331   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,338   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,341   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,343   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,344   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,352   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,353   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,355   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,360   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,362   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,369   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,371   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,373   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,383   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,385   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,387   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,392   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,394   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,396   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,398   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,405   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,407   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,412   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,415   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,418   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,429   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,431   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,433   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,435   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,437   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,441   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,446   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,449   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,451   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,453   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,455   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,456   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,458   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,460   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,461   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,465   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,466   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,470   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,472   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,475   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,481   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,483   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,485   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,486   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,488   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,490   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,492   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,495   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,497   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,498   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,500   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,502   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,507   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,509   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,511   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,515   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,516   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,518   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,520   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,522   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,524   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,526   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,527   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,529   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,531   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,532   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,537   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,540   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,544   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,553   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,555   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,561   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,569   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,572   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,574   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,578   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,583   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,585   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,589   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,591   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,593   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,595   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,597   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,598   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,600   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,606   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,608   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,610   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,612   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,614   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,616   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,618   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,628   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,632   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,634   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,638   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,642   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,644   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,646   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,648   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T15:42:27,651   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-01T15:42:27,652   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-01T15:42:27,654   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T15:42:27,655   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T15:42:27,856   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T15:42:27,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,883   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T15:42:27,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T15:42:27,904   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-01T15:42:27,905   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-01T15:42:27,907   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T15:42:27,909   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-01T15:42:27,910   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-01T15:42:27,915   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T15:42:27,917   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,939   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,941   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:27,944   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:27,945   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-01T15:42:27,946   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-01T15:42:27,966   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-01T15:42:27,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:27,971   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:27,993   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:28,016   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:28,019   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-01T15:42:28,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-01T15:42:28,022   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-01T15:42:28,041   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:28,068   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-01T15:42:28,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-01T15:42:28,072   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-01T15:42:28,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T15:42:28,114   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-01T15:42:28,115   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-01T15:42:28,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-01T15:42:28,137   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-01T15:42:28,138   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-01T15:42:28,161   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-01T15:42:28,164   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,182   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,260   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,287   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,289   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-01T15:42:28,290   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-01T15:42:28,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-01T15:42:28,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,340   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,342   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,344   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-01T15:42:28,345   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T15:42:28,347   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T15:42:28,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T15:42:28,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T15:42:28,352   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T15:42:28,355   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T15:42:28,356   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T15:42:28,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T15:42:28,361   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T15:42:28,363   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T15:42:28,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-01T15:42:28,367   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-01T15:42:28,369   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-01T15:42:28,370   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-01T15:42:28,373   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T15:42:28,374   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T15:42:28,377   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T15:42:28,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T15:42:28,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T15:42:28,383   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,395   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,423   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,429   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,431   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-01T15:42:28,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-01T15:42:28,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-01T15:42:28,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,438   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,446   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,449   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,451   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,454   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,456   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,459   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T15:42:28,462   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T15:42:28,463   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,464   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,466   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,471   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,473   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,481   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,483   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,484   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T15:42:28,486   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,488   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T15:42:28,489   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T15:42:28,491   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T15:42:28,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T15:42:28,496   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T15:42:28,498   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T15:42:28,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,521   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T15:42:28,543   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T15:42:28,546   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T15:42:28,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T15:42:28,550   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T15:42:28,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T15:42:28,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T15:42:28,570   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T15:42:28,571   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T15:42:28,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T15:42:28,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T15:42:28,578   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T15:42:28,581   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-01T15:42:28,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-01T15:42:28,585   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T15:42:28,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T15:42:28,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T15:42:28,602   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T15:42:28,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T15:42:28,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T15:42:28,608   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T15:42:28,611   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T15:42:28,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T15:42:28,614   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T15:42:28,618   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-01T15:42:28,619   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-01T15:42:28,622   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,623   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,636   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,641   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,643   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,646   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,648   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,650   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,655   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T15:42:28,660   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-01T15:42:28,661   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-01T15:42:28,681   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-01T15:42:28,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,699   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,709   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-01T15:42:28,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-01T15:42:28,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-01T15:42:28,735   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-01T15:42:28,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-01T15:42:28,739   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-01T15:42:28,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T15:42:28,789   running install_egg_info
2024-03-01T15:42:28,794   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.26-py3.11.egg-info
2024-03-01T15:42:28,807   running install_scripts
2024-03-01T15:42:28,858   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.26.dist-info/WHEEL
2024-03-01T15:42:28,862   creating '/tmp/pip-wheel-tby895pk/.tmp-sitjrqlc/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-01T15:42:28,865   adding 'moleculekit/__init__.py'
2024-03-01T15:42:28,867   adding 'moleculekit/_version.py'
2024-03-01T15:42:28,869   adding 'moleculekit/align.py'
2024-03-01T15:42:29,194   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:29,354   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:29,361   adding 'moleculekit/bondguesser.py'
2024-03-01T15:42:29,607   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:29,616   adding 'moleculekit/config.py'
2024-03-01T15:42:29,880   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:30,042   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:30,049   adding 'moleculekit/dihedral.py'
2024-03-01T15:42:30,050   adding 'moleculekit/distance.py'
2024-03-01T15:42:30,373   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:30,384   adding 'moleculekit/home.py'
2024-03-01T15:42:30,385   adding 'moleculekit/logging.ini'
2024-03-01T15:42:30,399   adding 'moleculekit/molecule.py'
2024-03-01T15:42:30,629   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:30,638   adding 'moleculekit/opm.py'
2024-03-01T15:42:30,641   adding 'moleculekit/periodictable.py'
2024-03-01T15:42:30,642   adding 'moleculekit/pymolgraphics.py'
2024-03-01T15:42:30,643   adding 'moleculekit/rcsb.py'
2024-03-01T15:42:30,645   adding 'moleculekit/rdkitintegration.py'
2024-03-01T15:42:30,664   adding 'moleculekit/readers.py'
2024-03-01T15:42:31,266   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:31,574   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:31,585   adding 'moleculekit/util.py'
2024-03-01T15:42:31,586   adding 'moleculekit/version.py'
2024-03-01T15:42:31,588   adding 'moleculekit/viewer.py'
2024-03-01T15:42:31,589   adding 'moleculekit/vmd_wrapper'
2024-03-01T15:42:31,591   adding 'moleculekit/vmdgraphics.py'
2024-03-01T15:42:31,593   adding 'moleculekit/vmdviewer.py'
2024-03-01T15:42:31,848   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:31,862   adding 'moleculekit/writers.py'
2024-03-01T15:42:32,124   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:32,133   adding 'moleculekit/atomselect/__init__.py'
2024-03-01T15:42:32,134   adding 'moleculekit/atomselect/analyze.py'
2024-03-01T15:42:32,136   adding 'moleculekit/atomselect/atomselect.py'
2024-03-01T15:42:32,138   adding 'moleculekit/atomselect/languageparser.py'
2024-03-01T15:42:32,242   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-03-01T15:42:32,253   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-03-01T15:42:32,344   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-03-01T15:42:32,353   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-03-01T15:42:32,442   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-03-01T15:42:32,450   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-03-01T15:42:32,553   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-03-01T15:42:32,563   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-03-01T15:42:32,565   adding 'moleculekit/fileformats/__init__.py'
2024-03-01T15:42:32,570   adding 'moleculekit/fileformats/netcdf.py'
2024-03-01T15:42:32,572   adding 'moleculekit/fileformats/utils.py'
2024-03-01T15:42:32,633   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-03-01T15:42:32,640   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-03-01T15:42:32,641   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-03-01T15:42:32,643   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-03-01T15:42:32,644   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-03-01T15:42:32,649   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-03-01T15:42:32,652   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-03-01T15:42:32,715   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-03-01T15:42:32,723   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-03-01T15:42:32,724   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-03-01T15:42:32,726   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-03-01T15:42:32,727   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-03-01T15:42:32,729   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-03-01T15:42:32,730   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-03-01T15:42:32,735   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-03-01T15:42:32,741   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-03-01T15:42:32,836   adding 'moleculekit/fileformats/xtc/trr.c'
2024-03-01T15:42:32,847   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-03-01T15:42:32,849   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-03-01T15:42:32,850   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-03-01T15:42:32,939   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-03-01T15:42:32,947   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-03-01T15:42:32,949   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-03-01T15:42:32,950   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-03-01T15:42:32,952   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-03-01T15:42:32,954   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-03-01T15:42:32,955   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-03-01T15:42:32,957   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-03-01T15:42:32,958   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-03-01T15:42:32,959   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-03-01T15:42:32,966   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-03-01T15:42:32,968   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-03-01T15:42:32,970   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-03-01T15:42:32,972   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-03-01T15:42:32,974   adding 'moleculekit/interactions/__init__.py'
2024-03-01T15:42:33,254   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:33,521   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:33,532   adding 'moleculekit/interactions/interactions.py'
2024-03-01T15:42:33,810   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:34,094   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-03-01T15:42:34,194   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-03-01T15:42:34,203   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-03-01T15:42:34,293   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-03-01T15:42:34,302   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-03-01T15:42:34,394   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-03-01T15:42:34,403   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-03-01T15:42:34,494   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-03-01T15:42:34,503   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-03-01T15:42:34,589   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-03-01T15:42:34,598   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-03-01T15:42:34,599   adding 'moleculekit/pdbx/__init__.py'
2024-03-01T15:42:34,603   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-03-01T15:42:34,605   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-03-01T15:42:34,607   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-03-01T15:42:34,609   adding 'moleculekit/pdbx/reader/__init__.py'
2024-03-01T15:42:34,611   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-03-01T15:42:34,612   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-03-01T15:42:34,614   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-03-01T15:42:34,615   adding 'moleculekit/pdbx/tests/__init__.py'
2024-03-01T15:42:34,617   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-03-01T15:42:34,618   adding 'moleculekit/pdbx/writer/__init__.py'
2024-03-01T15:42:34,620   adding 'moleculekit/ply/__init__.py'
2024-03-01T15:42:34,624   adding 'moleculekit/ply/lex.py'
2024-03-01T15:42:34,635   adding 'moleculekit/ply/yacc.py'
2024-03-01T15:42:34,638   adding 'moleculekit/projections/__init__.py'
2024-03-01T15:42:34,640   adding 'moleculekit/projections/metriccoordinate.py'
2024-03-01T15:42:34,644   adding 'moleculekit/projections/metricdihedral.py'
2024-03-01T15:42:34,648   adding 'moleculekit/projections/metricdistance.py'
2024-03-01T15:42:34,650   adding 'moleculekit/projections/metricfluctuation.py'
2024-03-01T15:42:34,652   adding 'moleculekit/projections/metricgyration.py'
2024-03-01T15:42:34,655   adding 'moleculekit/projections/metricplumed2.py'
2024-03-01T15:42:34,657   adding 'moleculekit/projections/metricrmsd.py'
2024-03-01T15:42:34,659   adding 'moleculekit/projections/metricsasa.py'
2024-03-01T15:42:34,661   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-03-01T15:42:34,663   adding 'moleculekit/projections/metricshell.py'
2024-03-01T15:42:34,665   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-03-01T15:42:34,667   adding 'moleculekit/projections/metrictmscore.py'
2024-03-01T15:42:34,668   adding 'moleculekit/projections/projection.py'
2024-03-01T15:42:34,669   adding 'moleculekit/projections/util.py'
2024-03-01T15:42:34,671   adding 'moleculekit/share/ALA.cif'
2024-03-01T15:42:34,673   adding 'moleculekit/share/backbone.cif'
2024-03-01T15:42:35,968   adding 'moleculekit/share/opm_sequences.json'
2024-03-01T15:42:36,053   adding 'moleculekit/share/atomselect/atomselect.json'
2024-03-01T15:42:36,058   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-03-01T15:42:36,059   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-03-01T15:42:36,060   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-03-01T15:42:36,061   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-03-01T15:42:36,062   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-03-01T15:42:36,063   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-03-01T15:42:36,064   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-03-01T15:42:36,066   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-03-01T15:42:36,067   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-03-01T15:42:36,068   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-03-01T15:42:36,069   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-03-01T15:42:36,070   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-03-01T15:42:36,072   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-03-01T15:42:36,073   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-03-01T15:42:36,074   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-03-01T15:42:36,075   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-03-01T15:42:36,077   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-03-01T15:42:36,078   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-03-01T15:42:36,079   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-03-01T15:42:36,080   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-03-01T15:42:36,082   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-03-01T15:42:36,083   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-03-01T15:42:36,084   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-03-01T15:42:36,085   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-03-01T15:42:36,087   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-03-01T15:42:36,088   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-03-01T15:42:36,089   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-03-01T15:42:36,091   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-03-01T15:42:36,092   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-03-01T15:42:36,093   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-03-01T15:42:36,094   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-03-01T15:42:36,096   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-03-01T15:42:36,097   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-03-01T15:42:36,098   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-03-01T15:42:36,099   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-03-01T15:42:36,101   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-03-01T15:42:36,102   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-03-01T15:42:36,103   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-03-01T15:42:36,104   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-03-01T15:42:36,106   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-03-01T15:42:36,107   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-03-01T15:42:36,108   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-03-01T15:42:36,109   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-03-01T15:42:36,110   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-03-01T15:42:36,111   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-03-01T15:42:36,112   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-03-01T15:42:36,114   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-03-01T15:42:36,115   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-03-01T15:42:36,116   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-03-01T15:42:36,117   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-03-01T15:42:36,118   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-03-01T15:42:36,119   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-03-01T15:42:36,120   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-03-01T15:42:36,122   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-03-01T15:42:36,123   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-03-01T15:42:36,124   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-03-01T15:42:36,125   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-03-01T15:42:36,126   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-03-01T15:42:36,128   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-03-01T15:42:36,129   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-03-01T15:42:36,130   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-03-01T15:42:36,131   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-03-01T15:42:36,132   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-03-01T15:42:36,133   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-03-01T15:42:36,135   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-03-01T15:42:36,136   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-03-01T15:42:36,137   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-03-01T15:42:36,138   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-03-01T15:42:36,140   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-03-01T15:42:36,141   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-03-01T15:42:36,143   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-03-01T15:42:36,144   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-03-01T15:42:36,145   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-03-01T15:42:36,146   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-03-01T15:42:36,147   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-03-01T15:42:36,149   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-03-01T15:42:36,150   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-03-01T15:42:36,151   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-03-01T15:42:36,152   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-03-01T15:42:36,154   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-03-01T15:42:36,155   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-03-01T15:42:36,156   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-03-01T15:42:36,157   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-03-01T15:42:36,158   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-03-01T15:42:36,160   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-03-01T15:42:36,161   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-03-01T15:42:36,162   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-03-01T15:42:36,163   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-03-01T15:42:36,165   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-03-01T15:42:36,166   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-03-01T15:42:36,167   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-03-01T15:42:36,168   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-03-01T15:42:36,169   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-03-01T15:42:36,171   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-03-01T15:42:36,172   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-03-01T15:42:36,173   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-03-01T15:42:36,174   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-03-01T15:42:36,175   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-03-01T15:42:36,176   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-03-01T15:42:36,177   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-03-01T15:42:36,179   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-03-01T15:42:36,180   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-03-01T15:42:36,181   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-03-01T15:42:36,182   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-03-01T15:42:36,183   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-03-01T15:42:36,185   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-03-01T15:42:36,186   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-03-01T15:42:36,187   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-03-01T15:42:36,188   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-03-01T15:42:36,189   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-03-01T15:42:36,190   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-03-01T15:42:36,192   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-03-01T15:42:36,193   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-03-01T15:42:36,194   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-03-01T15:42:36,195   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-03-01T15:42:36,196   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-03-01T15:42:36,197   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-03-01T15:42:36,199   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-03-01T15:42:36,200   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-03-01T15:42:36,201   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-03-01T15:42:36,202   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-03-01T15:42:36,203   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-03-01T15:42:36,205   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-03-01T15:42:36,206   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-03-01T15:42:36,207   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-03-01T15:42:36,208   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-03-01T15:42:36,210   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-03-01T15:42:36,211   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-03-01T15:42:36,212   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-03-01T15:42:36,214   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-03-01T15:42:36,215   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-03-01T15:42:36,216   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-03-01T15:42:36,217   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-03-01T15:42:36,219   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-03-01T15:42:36,220   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-03-01T15:42:36,221   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-03-01T15:42:36,222   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-03-01T15:42:36,224   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-03-01T15:42:36,225   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-03-01T15:42:36,226   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-03-01T15:42:36,228   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-03-01T15:42:36,229   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-03-01T15:42:36,230   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-03-01T15:42:36,231   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-03-01T15:42:36,232   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-03-01T15:42:36,234   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-03-01T15:42:36,235   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-03-01T15:42:36,236   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-03-01T15:42:36,237   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-03-01T15:42:36,238   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-03-01T15:42:36,239   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-03-01T15:42:36,240   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-03-01T15:42:36,241   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-03-01T15:42:36,242   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-03-01T15:42:36,244   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-03-01T15:42:36,245   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-03-01T15:42:36,246   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-03-01T15:42:36,247   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-03-01T15:42:36,248   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-03-01T15:42:36,250   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-03-01T15:42:36,251   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-03-01T15:42:36,252   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-03-01T15:42:36,253   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-03-01T15:42:36,254   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-03-01T15:42:36,255   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-03-01T15:42:36,256   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-03-01T15:42:36,258   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-03-01T15:42:36,259   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-03-01T15:42:36,260   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-03-01T15:42:36,261   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-03-01T15:42:36,262   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-03-01T15:42:36,263   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-03-01T15:42:36,265   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-03-01T15:42:36,266   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-03-01T15:42:36,267   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-03-01T15:42:36,269   adding 'moleculekit/smallmol/__init__.py'
2024-03-01T15:42:36,274   adding 'moleculekit/smallmol/smallmol.py'
2024-03-01T15:42:36,277   adding 'moleculekit/smallmol/smallmollib.py'
2024-03-01T15:42:36,278   adding 'moleculekit/smallmol/test_smallmol.py'
2024-03-01T15:42:36,280   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-03-01T15:42:36,282   adding 'moleculekit/smallmol/util.py'
2024-03-01T15:42:36,284   adding 'moleculekit/smallmol/tools/__init__.py'
2024-03-01T15:42:36,286   adding 'moleculekit/smallmol/tools/clustering.py'
2024-03-01T15:42:36,287   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-03-01T15:42:36,289   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-03-01T15:42:36,379   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-03-01T15:42:36,387   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-03-01T15:42:36,388   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-03-01T15:42:36,390   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-03-01T15:42:36,407   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-03-01T15:42:36,410   adding 'moleculekit/tools/__init__.py'
2024-03-01T15:42:36,413   adding 'moleculekit/tools/atomtyper.py'
2024-03-01T15:42:36,415   adding 'moleculekit/tools/autosegment.py'
2024-03-01T15:42:36,416   adding 'moleculekit/tools/crystalpacking.py'
2024-03-01T15:42:36,420   adding 'moleculekit/tools/detect.py'
2024-03-01T15:42:36,422   adding 'moleculekit/tools/docking.py'
2024-03-01T15:42:36,424   adding 'moleculekit/tools/graphalignment.py'
2024-03-01T15:42:36,429   adding 'moleculekit/tools/hhblitsprofile.py'
2024-03-01T15:42:36,430   adding 'moleculekit/tools/modelling.py'
2024-03-01T15:42:36,432   adding 'moleculekit/tools/moleculechecks.py'
2024-03-01T15:42:36,438   adding 'moleculekit/tools/preparation.py'
2024-03-01T15:42:36,441   adding 'moleculekit/tools/preparation_customres.py'
2024-03-01T15:42:36,442   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-03-01T15:42:36,445   adding 'moleculekit/tools/voxeldescriptors.py'
2024-03-01T15:42:36,447   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-03-01T15:42:36,448   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-03-01T15:42:36,540   adding 'moleculekit/wrapping/wrapping.cpp'
2024-03-01T15:42:36,549   adding 'moleculekit/wrapping/wrapping.pyx'
2024-03-01T15:42:36,551   adding 'moleculekit-1.8.26.dist-info/LICENSE'
2024-03-01T15:42:36,552   adding 'moleculekit-1.8.26.dist-info/METADATA'
2024-03-01T15:42:36,553   adding 'moleculekit-1.8.26.dist-info/WHEEL'
2024-03-01T15:42:36,554   adding 'moleculekit-1.8.26.dist-info/top_level.txt'
2024-03-01T15:42:36,559   adding 'moleculekit-1.8.26.dist-info/RECORD'
2024-03-01T15:42:36,725   removing build/bdist.linux-armv7l/wheel
2024-03-01T15:42:37,039   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-03-01T15:42:37,346   Created wheel for moleculekit: filename=moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl size=15272069 sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9
2024-03-01T15:42:37,347   Stored in directory: /tmp/pip-ephem-wheel-cache-thrlml6m/wheels/d5/e8/0f/c96190d958b2c8d6e389a9307b2950201227b13736d9ac08e3
2024-03-01T15:42:37,372 Successfully built moleculekit
2024-03-01T15:42:37,728 Removed build tracker: '/tmp/pip-build-tracker-987ndyyp'