2024-03-01T17:41:13,874 Created temporary directory: /tmp/pip-build-tracker-bt64strz
2024-03-01T17:41:13,875 Initialized build tracking at /tmp/pip-build-tracker-bt64strz
2024-03-01T17:41:13,876 Created build tracker: /tmp/pip-build-tracker-bt64strz
2024-03-01T17:41:13,876 Entered build tracker: /tmp/pip-build-tracker-bt64strz
2024-03-01T17:41:13,877 Created temporary directory: /tmp/pip-wheel-0ptxbfit
2024-03-01T17:41:13,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-3w8b6k6f
2024-03-01T17:41:13,910 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T17:41:13,914 2 location(s) to search for versions of moleculekit:
2024-03-01T17:41:13,914 * https://pypi.org/simple/moleculekit/
2024-03-01T17:41:13,914 * https://www.piwheels.org/simple/moleculekit/
2024-03-01T17:41:13,914 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-03-01T17:41:13,915 Getting page https://pypi.org/simple/moleculekit/
2024-03-01T17:41:13,916 Found index url https://pypi.org/simple/
2024-03-01T17:41:13,976 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-03-01T17:41:14,019   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,019   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-03-01T17:41:14,019   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,020   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-03-01T17:41:14,020   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,020   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-03-01T17:41:14,020   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,021   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-03-01T17:41:14,021   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,021   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-03-01T17:41:14,021   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,021   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-03-01T17:41:14,022   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,022   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-03-01T17:41:14,022   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,022   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-03-01T17:41:14,023   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,023   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-03-01T17:41:14,023   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,023   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-03-01T17:41:14,024   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,024   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-03-01T17:41:14,024   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,024   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-03-01T17:41:14,025   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,025   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-03-01T17:41:14,025   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,025   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-03-01T17:41:14,025   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,026   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-03-01T17:41:14,026   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,026   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-03-01T17:41:14,026   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,027   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-03-01T17:41:14,027   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,027   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-03-01T17:41:14,027   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,028   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-03-01T17:41:14,028   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,028   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-03-01T17:41:14,028   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,028   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-03-01T17:41:14,029   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,029   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-03-01T17:41:14,029   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,029   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-03-01T17:41:14,030   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,030   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-03-01T17:41:14,030   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,030   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-03-01T17:41:14,031   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,031   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-03-01T17:41:14,031   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,031   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-03-01T17:41:14,031   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,032   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-03-01T17:41:14,032   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,032   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-03-01T17:41:14,032   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,033   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-03-01T17:41:14,033   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,033   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-03-01T17:41:14,033   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,033   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-03-01T17:41:14,034   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,034   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-03-01T17:41:14,034   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,034   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-03-01T17:41:14,035   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-03-01T17:41:14,035   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2024-03-01T17:41:14,036   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
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2024-03-01T17:41:14,036   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2024-03-01T17:41:14,037   Found link https://files.pythonhosted.org/packages/29/c4/2af9ce826d6a8d2327401dd1a05b3beff8e1f96911d0e334db20410975ee/moleculekit-0.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.7
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2024-03-01T17:41:14,037   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
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2024-03-01T17:41:14,038   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
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2024-03-01T17:41:14,038   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
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2024-03-01T17:41:14,038   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
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2024-03-01T17:41:14,039   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-03-01T17:41:14,039   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,039   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
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2024-03-01T17:41:14,040   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
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2024-03-01T17:41:14,040   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
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2024-03-01T17:41:14,041   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
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2024-03-01T17:41:14,041   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
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2024-03-01T17:41:14,042   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
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2024-03-01T17:41:14,042   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
2024-03-01T17:41:14,042   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/c2/ae/6dcb36295ba009458f4ac17d3099f65f30ef7b52ee289ce857eaa09901e9/moleculekit-0.5.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-01T17:41:14,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/33/cb/c92c01bcbe6721a0de0efc2a6000170f30941c58471578d25966f935c655/moleculekit-0.5.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/13/6a/e73e6d343e35473a200e0744ab09efaa39adeebbbe191f752bc23d7a9b3a/moleculekit-0.5.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,043   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-01T17:41:14,044   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-01T17:41:14,045   Found link https://files.pythonhosted.org/packages/17/1c/02715b1ba7af95549df42e637af515cc5f062c0a6fb8bdeca03404949043/moleculekit-0.7.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.0
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2024-03-01T17:41:14,050   Found link https://files.pythonhosted.org/packages/b9/00/f8d458320556166424a904edf41546e5d55d31743c27c8f63467f607ac62/moleculekit-0.9.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.5
2024-03-01T17:41:14,051   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-03-01T17:41:14,051   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-03-01T17:41:14,051   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-03-01T17:41:14,051   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-03-01T17:41:14,052   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-03-01T17:41:14,052   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-03-01T17:41:14,052   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-03-01T17:41:14,052   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-03-01T17:41:14,053   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-03-01T17:41:14,053   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-03-01T17:41:14,053   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-03-01T17:41:14,053   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-03-01T17:41:14,054   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-03-01T17:41:14,054   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-03-01T17:41:14,054   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-03-01T17:41:14,054   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-03-01T17:41:14,055   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-03-01T17:41:14,055   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-03-01T17:41:14,055   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-03-01T17:41:14,055   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-03-01T17:41:14,056   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-03-01T17:41:14,056   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-03-01T17:41:14,056   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-03-01T17:41:14,056   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-03-01T17:41:14,057   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-03-01T17:41:14,057   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-03-01T17:41:14,057   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-03-01T17:41:14,057   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-03-01T17:41:14,058   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-03-01T17:41:14,058   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-03-01T17:41:14,058   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-03-01T17:41:14,058   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-03-01T17:41:14,059   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-03-01T17:41:14,059   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-03-01T17:41:14,059   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-03-01T17:41:14,059   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-03-01T17:41:14,060   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-03-01T17:41:14,060   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-03-01T17:41:14,060   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-03-01T17:41:14,060   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-03-01T17:41:14,061   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-03-01T17:41:14,061   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-03-01T17:41:14,061   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-03-01T17:41:14,061   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-03-01T17:41:14,062   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-03-01T17:41:14,062   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-03-01T17:41:14,062   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-03-01T17:41:14,062   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-03-01T17:41:14,063   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-03-01T17:41:14,064   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-03-01T17:41:14,065   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-03-01T17:41:14,065   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-03-01T17:41:14,066   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-03-01T17:41:14,066   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-03-01T17:41:14,067   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-03-01T17:41:14,067   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-03-01T17:41:14,068   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-03-01T17:41:14,068   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-03-01T17:41:14,069   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-03-01T17:41:14,069   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-03-01T17:41:14,070   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-03-01T17:41:14,070   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-03-01T17:41:14,071   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-03-01T17:41:14,072   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-03-01T17:41:14,072   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-03-01T17:41:14,073   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-03-01T17:41:14,073   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-03-01T17:41:14,074   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-03-01T17:41:14,074   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-03-01T17:41:14,075   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-03-01T17:41:14,075   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-03-01T17:41:14,076   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-03-01T17:41:14,076   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-03-01T17:41:14,077   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-03-01T17:41:14,078   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-03-01T17:41:14,078   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-03-01T17:41:14,079   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-03-01T17:41:14,079   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-03-01T17:41:14,080   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-03-01T17:41:14,080   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-03-01T17:41:14,081   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-03-01T17:41:14,081   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-03-01T17:41:14,082   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-03-01T17:41:14,082   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-03-01T17:41:14,083   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-03-01T17:41:14,084   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-03-01T17:41:14,084   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-03-01T17:41:14,085   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-03-01T17:41:14,085   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-03-01T17:41:14,086   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-03-01T17:41:14,086   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-03-01T17:41:14,087   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-03-01T17:41:14,087   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-03-01T17:41:14,088   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-03-01T17:41:14,088   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-03-01T17:41:14,089   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-03-01T17:41:14,089   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-03-01T17:41:14,090   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-03-01T17:41:14,091   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-03-01T17:41:14,091   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-03-01T17:41:14,092   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-03-01T17:41:14,092   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-03-01T17:41:14,093   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-03-01T17:41:14,093   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-03-01T17:41:14,094   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-03-01T17:41:14,094 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-03-01T17:41:14,094 Getting page https://www.piwheels.org/simple/moleculekit/
2024-03-01T17:41:14,096 Found index url https://www.piwheels.org/simple/
2024-03-01T17:41:15,346 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-03-01T17:41:15,492   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-01T17:41:15,493   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-01T17:41:15,493   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv6l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-01T17:41:15,494   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv6l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,494   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv7l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,494   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,494   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,495   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv6l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,495   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,495   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,495   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv7l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,495   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,496   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,496   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv6l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-01T17:41:15,496   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.20-cp311-cp311-linux_armv7l.whl#sha256=fae13ef57107e6cafbffdc377f58a8f0dcb271addce9e592e6d369da91076ad2 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-01T17:41:15,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-01T17:41:15,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,531   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,532   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,533   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,534   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-01T17:41:15,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-01T17:41:15,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-01T17:41:15,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-01T17:41:15,556 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-03-01T17:41:15,556 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-03-01T17:41:15,600 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-03-01T17:41:15,619 Collecting moleculekit==1.8.26
2024-03-01T17:41:15,621   Created temporary directory: /tmp/pip-unpack-ic9ijpz8
2024-03-01T17:41:15,675   Downloading moleculekit-1.8.26.tar.gz (6.8 MB)
2024-03-01T17:41:18,226   Added moleculekit==1.8.26 from https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz to build tracker '/tmp/pip-build-tracker-bt64strz'
2024-03-01T17:41:18,235   Created temporary directory: /tmp/pip-build-env-3hj_m8wa
2024-03-01T17:41:18,245   Installing build dependencies: started
2024-03-01T17:41:18,246   Running command pip subprocess to install build dependencies
2024-03-01T17:41:19,432   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-03-01T17:41:20,015   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T17:41:21,684   Collecting setuptools
2024-03-01T17:41:21,973     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-03-01T17:41:23,018   Collecting numpy>=1.18.5
2024-03-01T17:41:23,107     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-03-01T17:41:25,054   Collecting Cython>=0.29.21
2024-03-01T17:41:25,055     Obtaining dependency information for Cython>=0.29.21 from https://files.pythonhosted.org/packages/e3/7f/f584f5d15323feb897d42ef0e9d910649e2150d7a30cf7e7a8cc1d236e6f/Cython-3.0.8-py2.py3-none-any.whl.metadata
2024-03-01T17:41:25,062     Using cached Cython-3.0.8-py2.py3-none-any.whl.metadata (3.2 kB)
2024-03-01T17:41:25,142   Collecting toml
2024-03-01T17:41:25,171     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-03-01T17:41:26,222   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-03-01T17:41:26,313     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/versioneer/versioneer-0.28-py3-none-any.whl
2024-03-01T17:41:26,746     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-03-01T17:41:26,896   Collecting tomli (from versioneer[toml]==0.28)
2024-03-01T17:41:27,072     WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/tomli/tomli-2.0.1-py3-none-any.whl
2024-03-01T17:41:27,516     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-03-01T17:41:27,777   Using cached Cython-3.0.8-py2.py3-none-any.whl (1.2 MB)
2024-03-01T17:41:30,599   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-03-01T17:41:30,688     Creating /tmp/pip-build-env-3hj_m8wa/overlay/bin
2024-03-01T17:41:30,690     changing mode of /tmp/pip-build-env-3hj_m8wa/overlay/bin/versioneer to 755
2024-03-01T17:41:41,343     changing mode of /tmp/pip-build-env-3hj_m8wa/overlay/bin/f2py to 755
2024-03-01T17:41:44,173     changing mode of /tmp/pip-build-env-3hj_m8wa/overlay/bin/cygdb to 755
2024-03-01T17:41:44,175     changing mode of /tmp/pip-build-env-3hj_m8wa/overlay/bin/cython to 755
2024-03-01T17:41:44,177     changing mode of /tmp/pip-build-env-3hj_m8wa/overlay/bin/cythonize to 755
2024-03-01T17:41:44,205   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2024-03-01T17:41:44,205   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.4 which is incompatible.
2024-03-01T17:41:44,206   Successfully installed Cython-3.0.8 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-03-01T17:41:44,389   WARNING: There was an error checking the latest version of pip.
2024-03-01T17:41:44,852   Installing build dependencies: finished with status 'done'
2024-03-01T17:41:44,857   Getting requirements to build wheel: started
2024-03-01T17:41:44,858   Running command Getting requirements to build wheel
2024-03-01T17:43:02,282   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-03-01T17:43:21,061   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,061   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,061   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,062   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-01T17:43:21,063   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-01T17:43:21,063   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-01T17:43:21,063   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-01T17:43:21,063   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-01T17:43:21,063   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-03-01T17:43:21,063   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-03-01T17:43:21,063   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-03-01T17:43:21,063   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-03-01T17:43:21,063   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-03-01T17:43:21,064   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-03-01T17:43:21,064   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-03-01T17:43:21,064   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-03-01T17:43:21,064   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-03-01T17:43:21,064   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-03-01T17:43:21,064   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-03-01T17:43:21,064   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-03-01T17:43:21,064   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-03-01T17:43:21,064   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-03-01T17:43:21,065   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-03-01T17:43:21,375   running egg_info
2024-03-01T17:43:21,382   writing moleculekit.egg-info/PKG-INFO
2024-03-01T17:43:21,386   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-01T17:43:21,388   writing requirements to moleculekit.egg-info/requires.txt
2024-03-01T17:43:21,390   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-01T17:43:21,425   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,425   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,426   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,426   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,427   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,427   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,427   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,428   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,428   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,429   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,429   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,429   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,430   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,430   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,430   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,431   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,431   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,432   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,432   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,432   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,433   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,433   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,434   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,434   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,435   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,435   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,435   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,435   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,436   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,436   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,436   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,436   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,436   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,436   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:21,437   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-01T17:43:21,457   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T17:43:21,501   reading manifest template 'MANIFEST.in'
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2024-03-01T17:43:22,844   Getting requirements to build wheel: finished with status 'done'
2024-03-01T17:43:22,859   Installing backend dependencies: started
2024-03-01T17:43:22,860   Running command pip subprocess to install backend dependencies
2024-03-01T17:43:24,137   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-03-01T17:43:24,784   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-01T17:43:25,136   Collecting wheel
2024-03-01T17:43:25,153     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-03-01T17:43:27,652   Installing collected packages: wheel
2024-03-01T17:43:27,893     Creating /tmp/pip-build-env-3hj_m8wa/normal/bin
2024-03-01T17:43:27,895     changing mode of /tmp/pip-build-env-3hj_m8wa/normal/bin/wheel to 755
2024-03-01T17:43:27,909   Successfully installed wheel-0.42.0
2024-03-01T17:43:28,088   WARNING: There was an error checking the latest version of pip.
2024-03-01T17:43:28,317   Installing backend dependencies: finished with status 'done'
2024-03-01T17:43:28,320   Created temporary directory: /tmp/pip-modern-metadata-xhkt_jbx
2024-03-01T17:43:28,323   Preparing metadata (pyproject.toml): started
2024-03-01T17:43:28,324   Running command Preparing metadata (pyproject.toml)
2024-03-01T17:43:31,068   running dist_info
2024-03-01T17:43:31,070   creating /tmp/pip-modern-metadata-xhkt_jbx/moleculekit.egg-info
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2024-03-01T17:43:31,126   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,126   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,127   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,128   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,128   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,128   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,128   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,128   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,128   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,129   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,129   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,129   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,130   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,130   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,130   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,131   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,131   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,131   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,131   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:31,139   reading manifest file '/tmp/pip-modern-metadata-xhkt_jbx/moleculekit.egg-info/SOURCES.txt'
2024-03-01T17:43:31,141   reading manifest template 'MANIFEST.in'
2024-03-01T17:43:31,421   no previously-included directories found matching 'moleculekit/test-data'
2024-03-01T17:43:31,421   no previously-included directories found matching 'moleculekit/tests'
2024-03-01T17:43:31,422   no previously-included directories found matching 'package'
2024-03-01T17:43:31,422   adding license file 'LICENSE'
2024-03-01T17:43:31,436   writing manifest file '/tmp/pip-modern-metadata-xhkt_jbx/moleculekit.egg-info/SOURCES.txt'
2024-03-01T17:43:31,445   creating '/tmp/pip-modern-metadata-xhkt_jbx/moleculekit-1.8.26.dist-info'
2024-03-01T17:43:31,644   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-01T17:43:31,651   Source in /tmp/pip-wheel-0ptxbfit/moleculekit_2d90c445484d41c4ae2c2cdbcca6aa0d has version 1.8.26, which satisfies requirement moleculekit==1.8.26 from https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz
2024-03-01T17:43:31,652   Removed moleculekit==1.8.26 from https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz from build tracker '/tmp/pip-build-tracker-bt64strz'
2024-03-01T17:43:31,658 Created temporary directory: /tmp/pip-unpack-042vj0o_
2024-03-01T17:43:31,658 Created temporary directory: /tmp/pip-unpack-5kg6amo2
2024-03-01T17:43:31,667 Building wheels for collected packages: moleculekit
2024-03-01T17:43:31,671   Created temporary directory: /tmp/pip-wheel-tnquqshb
2024-03-01T17:43:31,671   Destination directory: /tmp/pip-wheel-tnquqshb
2024-03-01T17:43:31,673   Building wheel for moleculekit (pyproject.toml): started
2024-03-01T17:43:31,674   Running command Building wheel for moleculekit (pyproject.toml)
2024-03-01T17:43:34,456   running bdist_wheel
2024-03-01T17:43:34,476   running build
2024-03-01T17:43:34,476   running build_py
2024-03-01T17:43:34,484   creating build
2024-03-01T17:43:34,484   creating build/lib.linux-armv7l-cpython-39
2024-03-01T17:43:34,485   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,486   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,489   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,491   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,493   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,495   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,497   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,502   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,508   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,515   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,518   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,520   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,521   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,524   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,525   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,527   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,528   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,531   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,532   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,535   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,536   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,538   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:34,541   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,542   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,545   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,547   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,549   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,551   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,554   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,556   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,559   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,560   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,562   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,565   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,568   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,570   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,573   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-01T17:43:34,576   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-01T17:43:34,577   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-01T17:43:34,578   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-01T17:43:34,582   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-01T17:43:34,583   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-01T17:43:34,585   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-01T17:43:34,588   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-01T17:43:34,589   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-01T17:43:34,591   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-01T17:43:34,592   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-01T17:43:34,597   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-01T17:43:34,599   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-01T17:43:34,602   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-01T17:43:34,603   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-01T17:43:34,606   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-01T17:43:34,607   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-01T17:43:34,611   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-03-01T17:43:34,612   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-03-01T17:43:34,614   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,615   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,618   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,621   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,623   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,626   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,627   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-01T17:43:34,631   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,632   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,635   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,637   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,640   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,642   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,644   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,646   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,648   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,651   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,653   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,655   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,657   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,659   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,661   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,663   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-01T17:43:34,666   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-01T17:43:34,667   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-01T17:43:34,669   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-01T17:43:34,672   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-01T17:43:34,673   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-01T17:43:34,676   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-01T17:43:34,678   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-01T17:43:34,680   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-01T17:43:34,683   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-01T17:43:34,684   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-01T17:43:34,687   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-01T17:43:34,691   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-01T17:43:34,692   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-01T17:43:34,696   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-01T17:43:34,697   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-01T17:43:34,699   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-01T17:43:34,702   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-01T17:43:34,703   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-01T17:43:34,705   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-01T17:43:34,707   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-01T17:43:34,710   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-01T17:43:34,713   running egg_info
2024-03-01T17:43:34,720   writing moleculekit.egg-info/PKG-INFO
2024-03-01T17:43:34,723   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-01T17:43:34,725   writing requirements to moleculekit.egg-info/requires.txt
2024-03-01T17:43:34,726   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-01T17:43:34,745   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,746   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,746   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,747   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,747   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,747   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,748   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,748   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,748   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,749   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,749   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,749   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,750   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,750   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,750   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,751   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,751   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,751   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,752   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,752   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,752   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,753   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,753   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,753   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,754   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,754   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,754   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,755   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,755   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,755   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,756   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,756   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,756   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,757   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,757   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,757   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,758   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,758   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,758   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,759   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,759   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,759   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,760   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,760   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,760   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,761   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,761   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,761   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,762   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,762   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,762   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,763   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,763   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,763   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,764   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,764   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,765   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,765   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,765   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,766   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,768   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,768   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,768   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,769   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,769   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,770   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,770   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,771   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,771   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,771   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,772   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,773   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,773   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,773   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,774   dependency /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-01T17:43:34,780   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T17:43:34,790   reading manifest template 'MANIFEST.in'
2024-03-01T17:43:35,057   no previously-included directories found matching 'moleculekit/test-data'
2024-03-01T17:43:35,059   no previously-included directories found matching 'moleculekit/tests'
2024-03-01T17:43:35,060   no previously-included directories found matching 'package'
2024-03-01T17:43:35,061   adding license file 'LICENSE'
2024-03-01T17:43:35,080   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-01T17:43:35,093   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-03-01T17:43:35,093   !!

2024-03-01T17:43:35,094           ********************************************************************************
2024-03-01T17:43:35,094           ############################
2024-03-01T17:43:35,094           # Package would be ignored #
2024-03-01T17:43:35,094           ############################
2024-03-01T17:43:35,094           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-03-01T17:43:35,094           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,094           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,095           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-03-01T17:43:35,095           to the `packages` configuration field.

2024-03-01T17:43:35,095           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,095           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,095           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,095           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,096           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,096           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-03-01T17:43:35,096           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-03-01T17:43:35,096           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,096           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,096           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,097           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,097           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,097           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,097                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,097                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,098                 directory, all directories are treated like packages.
2024-03-01T17:43:35,098           ********************************************************************************

2024-03-01T17:43:35,098   !!
2024-03-01T17:43:35,098     check.warn(importable)
2024-03-01T17:43:35,098   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-03-01T17:43:35,098   !!

2024-03-01T17:43:35,099           ********************************************************************************
2024-03-01T17:43:35,099           ############################
2024-03-01T17:43:35,099           # Package would be ignored #
2024-03-01T17:43:35,099           ############################
2024-03-01T17:43:35,099           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-03-01T17:43:35,099           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,099           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,100           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-03-01T17:43:35,100           to the `packages` configuration field.

2024-03-01T17:43:35,100           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,100           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,100           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,100           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,101           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,101           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-03-01T17:43:35,101           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-03-01T17:43:35,101           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,101           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,101           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,101           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,102           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,102           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,102                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,102                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,102                 directory, all directories are treated like packages.
2024-03-01T17:43:35,102           ********************************************************************************

2024-03-01T17:43:35,103   !!
2024-03-01T17:43:35,103     check.warn(importable)
2024-03-01T17:43:35,103   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-03-01T17:43:35,103   !!

2024-03-01T17:43:35,103           ********************************************************************************
2024-03-01T17:43:35,103           ############################
2024-03-01T17:43:35,104           # Package would be ignored #
2024-03-01T17:43:35,104           ############################
2024-03-01T17:43:35,104           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-03-01T17:43:35,104           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,104           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,104           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-03-01T17:43:35,104           to the `packages` configuration field.

2024-03-01T17:43:35,105           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,105           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,105           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,105           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,105           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,105           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-03-01T17:43:35,106           already explicitly excluding 'moleculekit.cython_utils' via
2024-03-01T17:43:35,106           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,106           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,106           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,106           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,106           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,107           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,107                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,107                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,107                 directory, all directories are treated like packages.
2024-03-01T17:43:35,107           ********************************************************************************

2024-03-01T17:43:35,107   !!
2024-03-01T17:43:35,107     check.warn(importable)
2024-03-01T17:43:35,107   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-03-01T17:43:35,108   !!

2024-03-01T17:43:35,108           ********************************************************************************
2024-03-01T17:43:35,108           ############################
2024-03-01T17:43:35,108           # Package would be ignored #
2024-03-01T17:43:35,108           ############################
2024-03-01T17:43:35,108           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-03-01T17:43:35,108           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,108           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,109           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-03-01T17:43:35,109           to the `packages` configuration field.

2024-03-01T17:43:35,109           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,109           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,109           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,109           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,110           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,110           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-03-01T17:43:35,110           already explicitly excluding 'moleculekit.distance_utils' via
2024-03-01T17:43:35,110           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,110           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,110           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,110           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,111           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,111           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,111                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,111                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,111                 directory, all directories are treated like packages.
2024-03-01T17:43:35,111           ********************************************************************************

2024-03-01T17:43:35,112   !!
2024-03-01T17:43:35,112     check.warn(importable)
2024-03-01T17:43:35,112   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-03-01T17:43:35,112   !!

2024-03-01T17:43:35,112           ********************************************************************************
2024-03-01T17:43:35,112           ############################
2024-03-01T17:43:35,112           # Package would be ignored #
2024-03-01T17:43:35,112           ############################
2024-03-01T17:43:35,112           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-03-01T17:43:35,113           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,113           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,113           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-03-01T17:43:35,113           to the `packages` configuration field.

2024-03-01T17:43:35,113           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,113           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,113           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,114           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,114           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,114           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-03-01T17:43:35,114           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-03-01T17:43:35,114           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,114           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,114           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,115           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,115           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,115           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,115                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,116                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,116                 directory, all directories are treated like packages.
2024-03-01T17:43:35,116           ********************************************************************************

2024-03-01T17:43:35,116   !!
2024-03-01T17:43:35,116     check.warn(importable)
2024-03-01T17:43:35,116   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-03-01T17:43:35,116   !!

2024-03-01T17:43:35,117           ********************************************************************************
2024-03-01T17:43:35,117           ############################
2024-03-01T17:43:35,117           # Package would be ignored #
2024-03-01T17:43:35,117           ############################
2024-03-01T17:43:35,117           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-03-01T17:43:35,117           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,117           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,117           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-03-01T17:43:35,118           to the `packages` configuration field.

2024-03-01T17:43:35,118           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,118           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,118           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,118           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,118           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,119           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-03-01T17:43:35,119           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-03-01T17:43:35,119           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,119           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,119           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,119           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,119           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,120           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,120                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,120                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,120                 directory, all directories are treated like packages.
2024-03-01T17:43:35,120           ********************************************************************************

2024-03-01T17:43:35,120   !!
2024-03-01T17:43:35,121     check.warn(importable)
2024-03-01T17:43:35,121   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-03-01T17:43:35,121   !!

2024-03-01T17:43:35,121           ********************************************************************************
2024-03-01T17:43:35,121           ############################
2024-03-01T17:43:35,121           # Package would be ignored #
2024-03-01T17:43:35,121           ############################
2024-03-01T17:43:35,121           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-03-01T17:43:35,122           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,122           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,122           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-03-01T17:43:35,122           to the `packages` configuration field.

2024-03-01T17:43:35,122           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,122           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,122           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,123           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,123           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,123           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-03-01T17:43:35,123           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-03-01T17:43:35,123           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,123           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,123           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,124           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,124           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,124           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,124                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,124                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,125                 directory, all directories are treated like packages.
2024-03-01T17:43:35,125           ********************************************************************************

2024-03-01T17:43:35,125   !!
2024-03-01T17:43:35,125     check.warn(importable)
2024-03-01T17:43:35,125   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-03-01T17:43:35,125   !!

2024-03-01T17:43:35,125           ********************************************************************************
2024-03-01T17:43:35,126           ############################
2024-03-01T17:43:35,126           # Package would be ignored #
2024-03-01T17:43:35,126           ############################
2024-03-01T17:43:35,126           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-03-01T17:43:35,126           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,126           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,126           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-03-01T17:43:35,126           to the `packages` configuration field.

2024-03-01T17:43:35,127           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,127           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,127           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,127           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,127           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,128           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-03-01T17:43:35,128           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-03-01T17:43:35,128           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,128           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,128           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,128           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,128           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,129           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,129                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,129                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,129                 directory, all directories are treated like packages.
2024-03-01T17:43:35,129           ********************************************************************************

2024-03-01T17:43:35,129   !!
2024-03-01T17:43:35,129     check.warn(importable)
2024-03-01T17:43:35,130   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-03-01T17:43:35,130   !!

2024-03-01T17:43:35,130           ********************************************************************************
2024-03-01T17:43:35,130           ############################
2024-03-01T17:43:35,130           # Package would be ignored #
2024-03-01T17:43:35,130           ############################
2024-03-01T17:43:35,130           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-03-01T17:43:35,130           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,131           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,131           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-03-01T17:43:35,131           to the `packages` configuration field.

2024-03-01T17:43:35,131           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,131           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,131           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,132           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,132           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,132           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-03-01T17:43:35,132           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-03-01T17:43:35,132           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,132           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,133           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,133           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,133           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,133           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,133                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,134                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,134                 directory, all directories are treated like packages.
2024-03-01T17:43:35,134           ********************************************************************************

2024-03-01T17:43:35,134   !!
2024-03-01T17:43:35,134     check.warn(importable)
2024-03-01T17:43:35,134   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-03-01T17:43:35,135   !!

2024-03-01T17:43:35,135           ********************************************************************************
2024-03-01T17:43:35,135           ############################
2024-03-01T17:43:35,135           # Package would be ignored #
2024-03-01T17:43:35,135           ############################
2024-03-01T17:43:35,135           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-03-01T17:43:35,135           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,136           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,136           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-03-01T17:43:35,136           to the `packages` configuration field.

2024-03-01T17:43:35,136           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,136           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,136           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,136           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,137           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,137           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-03-01T17:43:35,137           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-03-01T17:43:35,137           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,137           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,137           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,137           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,138           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,138           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,138                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,138                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,138                 directory, all directories are treated like packages.
2024-03-01T17:43:35,138           ********************************************************************************

2024-03-01T17:43:35,139   !!
2024-03-01T17:43:35,139     check.warn(importable)
2024-03-01T17:43:35,139   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-03-01T17:43:35,139   !!

2024-03-01T17:43:35,139           ********************************************************************************
2024-03-01T17:43:35,139           ############################
2024-03-01T17:43:35,139           # Package would be ignored #
2024-03-01T17:43:35,140           ############################
2024-03-01T17:43:35,140           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-03-01T17:43:35,140           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,140           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,140           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-03-01T17:43:35,140           to the `packages` configuration field.

2024-03-01T17:43:35,140           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,141           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,141           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,141           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,141           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,141           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-03-01T17:43:35,141           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-03-01T17:43:35,141           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,142           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,142           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,142           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,142           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,142           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,143                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,143                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,143                 directory, all directories are treated like packages.
2024-03-01T17:43:35,143           ********************************************************************************

2024-03-01T17:43:35,143   !!
2024-03-01T17:43:35,143     check.warn(importable)
2024-03-01T17:43:35,143   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-03-01T17:43:35,143   !!

2024-03-01T17:43:35,144           ********************************************************************************
2024-03-01T17:43:35,144           ############################
2024-03-01T17:43:35,144           # Package would be ignored #
2024-03-01T17:43:35,144           ############################
2024-03-01T17:43:35,144           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-03-01T17:43:35,144           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,144           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,144           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-03-01T17:43:35,145           to the `packages` configuration field.

2024-03-01T17:43:35,145           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,145           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,145           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,145           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,145           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,146           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-03-01T17:43:35,146           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-03-01T17:43:35,146           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,146           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,146           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,146           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,147           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,147           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,147                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,147                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,147                 directory, all directories are treated like packages.
2024-03-01T17:43:35,147           ********************************************************************************

2024-03-01T17:43:35,148   !!
2024-03-01T17:43:35,148     check.warn(importable)
2024-03-01T17:43:35,148   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-03-01T17:43:35,148   !!

2024-03-01T17:43:35,148           ********************************************************************************
2024-03-01T17:43:35,148           ############################
2024-03-01T17:43:35,148           # Package would be ignored #
2024-03-01T17:43:35,148           ############################
2024-03-01T17:43:35,148           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-03-01T17:43:35,149           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,149           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,149           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-03-01T17:43:35,149           to the `packages` configuration field.

2024-03-01T17:43:35,150           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,150           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,150           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,150           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,150           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,151           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-03-01T17:43:35,151           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-03-01T17:43:35,151           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,151           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,151           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,152           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,152           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,152           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,152                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,152                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,152                 directory, all directories are treated like packages.
2024-03-01T17:43:35,153           ********************************************************************************

2024-03-01T17:43:35,153   !!
2024-03-01T17:43:35,153     check.warn(importable)
2024-03-01T17:43:35,153   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-03-01T17:43:35,153   !!

2024-03-01T17:43:35,153           ********************************************************************************
2024-03-01T17:43:35,153           ############################
2024-03-01T17:43:35,154           # Package would be ignored #
2024-03-01T17:43:35,154           ############################
2024-03-01T17:43:35,154           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-03-01T17:43:35,154           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,154           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,154           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-03-01T17:43:35,154           to the `packages` configuration field.

2024-03-01T17:43:35,155           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,155           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,155           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,155           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,156           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,156           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-03-01T17:43:35,156           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-03-01T17:43:35,156           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,156           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,156           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,157           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,157           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,157           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,158                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,158                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,158                 directory, all directories are treated like packages.
2024-03-01T17:43:35,158           ********************************************************************************

2024-03-01T17:43:35,158   !!
2024-03-01T17:43:35,158     check.warn(importable)
2024-03-01T17:43:35,159   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-03-01T17:43:35,159   !!

2024-03-01T17:43:35,159           ********************************************************************************
2024-03-01T17:43:35,159           ############################
2024-03-01T17:43:35,159           # Package would be ignored #
2024-03-01T17:43:35,159           ############################
2024-03-01T17:43:35,160           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-03-01T17:43:35,160           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,160           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,160           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-03-01T17:43:35,160           to the `packages` configuration field.

2024-03-01T17:43:35,161           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,161           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,161           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,161           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,161           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,162           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-03-01T17:43:35,162           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-03-01T17:43:35,162           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,162           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,162           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,163           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,163           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,163           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,164                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,164                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,164                 directory, all directories are treated like packages.
2024-03-01T17:43:35,164           ********************************************************************************

2024-03-01T17:43:35,164   !!
2024-03-01T17:43:35,164     check.warn(importable)
2024-03-01T17:43:35,165   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-03-01T17:43:35,165   !!

2024-03-01T17:43:35,165           ********************************************************************************
2024-03-01T17:43:35,165           ############################
2024-03-01T17:43:35,165           # Package would be ignored #
2024-03-01T17:43:35,166           ############################
2024-03-01T17:43:35,166           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-03-01T17:43:35,166           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,166           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,166           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-03-01T17:43:35,166           to the `packages` configuration field.

2024-03-01T17:43:35,167           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,167           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,167           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,167           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,167           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,167           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-03-01T17:43:35,168           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-03-01T17:43:35,168           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,168           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,168           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,168           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,168           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,169           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,169                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,169                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,169                 directory, all directories are treated like packages.
2024-03-01T17:43:35,169           ********************************************************************************

2024-03-01T17:43:35,169   !!
2024-03-01T17:43:35,170     check.warn(importable)
2024-03-01T17:43:35,170   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-03-01T17:43:35,170   !!

2024-03-01T17:43:35,170           ********************************************************************************
2024-03-01T17:43:35,170           ############################
2024-03-01T17:43:35,170           # Package would be ignored #
2024-03-01T17:43:35,170           ############################
2024-03-01T17:43:35,170           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-03-01T17:43:35,171           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,171           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,171           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-03-01T17:43:35,171           to the `packages` configuration field.

2024-03-01T17:43:35,171           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,172           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,172           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,172           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,173           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,174           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-03-01T17:43:35,174           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-03-01T17:43:35,174           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,174           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,175           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,175           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,176           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,176           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,177                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,177                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,177                 directory, all directories are treated like packages.
2024-03-01T17:43:35,177           ********************************************************************************

2024-03-01T17:43:35,178   !!
2024-03-01T17:43:35,178     check.warn(importable)
2024-03-01T17:43:35,178   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-03-01T17:43:35,178   !!

2024-03-01T17:43:35,179           ********************************************************************************
2024-03-01T17:43:35,179           ############################
2024-03-01T17:43:35,179           # Package would be ignored #
2024-03-01T17:43:35,180           ############################
2024-03-01T17:43:35,180           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-03-01T17:43:35,180           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,181           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,181           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-03-01T17:43:35,181           to the `packages` configuration field.

2024-03-01T17:43:35,181           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,181           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,181           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,182           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,182           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,183           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-03-01T17:43:35,183           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-03-01T17:43:35,183           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,184           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,184           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,184           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,185           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,185           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,186                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,186                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,186                 directory, all directories are treated like packages.
2024-03-01T17:43:35,186           ********************************************************************************

2024-03-01T17:43:35,187   !!
2024-03-01T17:43:35,187     check.warn(importable)
2024-03-01T17:43:35,187   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-03-01T17:43:35,187   !!

2024-03-01T17:43:35,188           ********************************************************************************
2024-03-01T17:43:35,188           ############################
2024-03-01T17:43:35,188           # Package would be ignored #
2024-03-01T17:43:35,188           ############################
2024-03-01T17:43:35,189           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-03-01T17:43:35,189           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,189           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,189           package, please make sure that 'moleculekit.share' is explicitly added
2024-03-01T17:43:35,189           to the `packages` configuration field.

2024-03-01T17:43:35,190           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,190           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,190           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,191           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,191           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,191           If you don't want 'moleculekit.share' to be distributed and are
2024-03-01T17:43:35,192           already explicitly excluding 'moleculekit.share' via
2024-03-01T17:43:35,192           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,192           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,192           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,192           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,193           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,193           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,194                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,194                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,194                 directory, all directories are treated like packages.
2024-03-01T17:43:35,194           ********************************************************************************

2024-03-01T17:43:35,194   !!
2024-03-01T17:43:35,195     check.warn(importable)
2024-03-01T17:43:35,195   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-03-01T17:43:35,195   !!

2024-03-01T17:43:35,196           ********************************************************************************
2024-03-01T17:43:35,196           ############################
2024-03-01T17:43:35,196           # Package would be ignored #
2024-03-01T17:43:35,197           ############################
2024-03-01T17:43:35,197           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-03-01T17:43:35,197           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,197           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,198           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-03-01T17:43:35,198           to the `packages` configuration field.

2024-03-01T17:43:35,198           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,198           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,199           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,199           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,200           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,200           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-03-01T17:43:35,200           already explicitly excluding 'moleculekit.share.atomselect' via
2024-03-01T17:43:35,201           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,201           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,201           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,201           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,202           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,202           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,203                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,203                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,203                 directory, all directories are treated like packages.
2024-03-01T17:43:35,203           ********************************************************************************

2024-03-01T17:43:35,204   !!
2024-03-01T17:43:35,204     check.warn(importable)
2024-03-01T17:43:35,204   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-03-01T17:43:35,204   !!

2024-03-01T17:43:35,204           ********************************************************************************
2024-03-01T17:43:35,205           ############################
2024-03-01T17:43:35,205           # Package would be ignored #
2024-03-01T17:43:35,205           ############################
2024-03-01T17:43:35,205           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-03-01T17:43:35,205           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,206           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,206           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-03-01T17:43:35,206           to the `packages` configuration field.

2024-03-01T17:43:35,206           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,206           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,206           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,207           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,207           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,207           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-03-01T17:43:35,207           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-03-01T17:43:35,208           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,208           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,208           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,208           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,208           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,209           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,209                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,209                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,209                 directory, all directories are treated like packages.
2024-03-01T17:43:35,209           ********************************************************************************

2024-03-01T17:43:35,209   !!
2024-03-01T17:43:35,210     check.warn(importable)
2024-03-01T17:43:35,210   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-03-01T17:43:35,210   !!

2024-03-01T17:43:35,210           ********************************************************************************
2024-03-01T17:43:35,210           ############################
2024-03-01T17:43:35,211           # Package would be ignored #
2024-03-01T17:43:35,211           ############################
2024-03-01T17:43:35,211           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-03-01T17:43:35,211           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,211           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,211           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-03-01T17:43:35,211           to the `packages` configuration field.

2024-03-01T17:43:35,212           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,212           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,212           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,212           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,212           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,213           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-03-01T17:43:35,213           already explicitly excluding 'moleculekit.tmalign' via
2024-03-01T17:43:35,213           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,213           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,213           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,213           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,214           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,214           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,214                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,214                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,214                 directory, all directories are treated like packages.
2024-03-01T17:43:35,215           ********************************************************************************

2024-03-01T17:43:35,215   !!
2024-03-01T17:43:35,215     check.warn(importable)
2024-03-01T17:43:35,215   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-03-01T17:43:35,215   !!

2024-03-01T17:43:35,216           ********************************************************************************
2024-03-01T17:43:35,216           ############################
2024-03-01T17:43:35,216           # Package would be ignored #
2024-03-01T17:43:35,216           ############################
2024-03-01T17:43:35,216           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-03-01T17:43:35,216           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,216           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,217           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-03-01T17:43:35,217           to the `packages` configuration field.

2024-03-01T17:43:35,217           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,217           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,217           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,217           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,218           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,218           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-03-01T17:43:35,218           already explicitly excluding 'moleculekit.tmalign.include' via
2024-03-01T17:43:35,218           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,218           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,218           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,219           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,219           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,219           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,219                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,219                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,220                 directory, all directories are treated like packages.
2024-03-01T17:43:35,220           ********************************************************************************

2024-03-01T17:43:35,220   !!
2024-03-01T17:43:35,220     check.warn(importable)
2024-03-01T17:43:35,220   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-03-01T17:43:35,221   !!

2024-03-01T17:43:35,221           ********************************************************************************
2024-03-01T17:43:35,221           ############################
2024-03-01T17:43:35,221           # Package would be ignored #
2024-03-01T17:43:35,221           ############################
2024-03-01T17:43:35,221           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-03-01T17:43:35,221           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,222           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,222           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-03-01T17:43:35,222           to the `packages` configuration field.

2024-03-01T17:43:35,222           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,222           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,222           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,223           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,223           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,223           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-03-01T17:43:35,223           already explicitly excluding 'moleculekit.tmalign.src' via
2024-03-01T17:43:35,223           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,224           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,224           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,224           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,224           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,224           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,225                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,225                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,225                 directory, all directories are treated like packages.
2024-03-01T17:43:35,225           ********************************************************************************

2024-03-01T17:43:35,226   !!
2024-03-01T17:43:35,226     check.warn(importable)
2024-03-01T17:43:35,226   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-03-01T17:43:35,226   !!

2024-03-01T17:43:35,226           ********************************************************************************
2024-03-01T17:43:35,226           ############################
2024-03-01T17:43:35,226           # Package would be ignored #
2024-03-01T17:43:35,227           ############################
2024-03-01T17:43:35,227           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-03-01T17:43:35,227           but it is absent from setuptools' `packages` configuration.

2024-03-01T17:43:35,227           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-01T17:43:35,227           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-03-01T17:43:35,227           to the `packages` configuration field.

2024-03-01T17:43:35,228           Alternatively, you can also rely on setuptools' discovery methods
2024-03-01T17:43:35,228           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-01T17:43:35,228           instead of `find_packages(...)`/`find:`).

2024-03-01T17:43:35,228           You can read more about "package discovery" on setuptools documentation page:

2024-03-01T17:43:35,229           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-01T17:43:35,229           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-03-01T17:43:35,229           already explicitly excluding 'moleculekit.wrapping' via
2024-03-01T17:43:35,229           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-01T17:43:35,229           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-01T17:43:35,229           combination with a more fine grained `package-data` configuration.

2024-03-01T17:43:35,230           You can read more about "package data files" on setuptools documentation page:

2024-03-01T17:43:35,230           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-01T17:43:35,230           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-01T17:43:35,230                 even if it does not contain any `.py` files.
2024-03-01T17:43:35,230                 On the other hand, currently there is no concept of package data
2024-03-01T17:43:35,231                 directory, all directories are treated like packages.
2024-03-01T17:43:35,231           ********************************************************************************

2024-03-01T17:43:35,231   !!
2024-03-01T17:43:35,231     check.warn(importable)
2024-03-01T17:43:35,231   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:35,232   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:35,232   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-01T17:43:35,232   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-01T17:43:35,250   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-01T17:43:35,260   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-01T17:43:35,262   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-01T17:43:35,301   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-01T17:43:35,303   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-01T17:43:35,304   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-01T17:43:35,356   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-01T17:43:35,359   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-01T17:43:35,361   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-01T17:43:35,403   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-01T17:43:35,407   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-01T17:43:35,407   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-01T17:43:35,439   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-01T17:43:35,441   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-01T17:43:35,442   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-01T17:43:35,445   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-01T17:43:35,448   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-01T17:43:35,764   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-03-01T17:43:35,765   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-03-01T17:43:35,767   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-03-01T17:43:35,768   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,769   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,771   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,774   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,776   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,778   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,781   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,783   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,785   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,789   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,792   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,795   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,798   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,800   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,803   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,805   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,808   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,810   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,814   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,816   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,818   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,821   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,824   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,827   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,830   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,832   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,835   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,838   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,841   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,844   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,847   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,850   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,853   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,855   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,858   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,860   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,863   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,866   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,869   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,872   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,875   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,877   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,880   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,883   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,885   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:35,888   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,106   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,108   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,110   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,112   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,115   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,117   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,119   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,122   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,124   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,126   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,128   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,131   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,134   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,137   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,140   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,143   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,147   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,150   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,154   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,157   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,162   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,166   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,170   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,172   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,174   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,176   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,178   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,180   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,183   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,185   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,187   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,189   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,191   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,193   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,195   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,197   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,416   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,418   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,421   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,424   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,438   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,440   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,443   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,445   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,448   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,450   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,452   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,455   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,457   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,459   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,461   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,463   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,466   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,468   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,471   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,473   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,476   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,478   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,480   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,483   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,486   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,488   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,490   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,492   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,495   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,497   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,499   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,501   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,503   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,505   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,508   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,509   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,511   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,513   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,516   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,519   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,522   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,527   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,532   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,536   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,540   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,544   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,548   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,551   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,554   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,558   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,562   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,566   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,571   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,576   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,579   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,581   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,583   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,585   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,587   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,589   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,591   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,594   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,597   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,600   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,603   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,607   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,610   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,613   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,616   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,620   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,623   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,626   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,630   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,633   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,637   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,640   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,644   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,647   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,651   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,654   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,658   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,661   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,665   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,670   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,675   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,679   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,683   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,686   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,689   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,693   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,695   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,698   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,701   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,916   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-01T17:43:36,918   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-01T17:43:36,918   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-01T17:43:36,980   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-01T17:43:36,992   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-01T17:43:36,995   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-03-01T17:43:36,996   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-03-01T17:43:37,007   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-01T17:43:37,007   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-01T17:43:37,014   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-01T17:43:37,015   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-01T17:43:37,075   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-01T17:43:37,078   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-01T17:43:37,079   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-01T17:43:37,127   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-01T17:43:37,130   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-01T17:43:37,131   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-01T17:43:37,171   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-01T17:43:37,175   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-01T17:43:37,177   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-01T17:43:37,209   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-01T17:43:37,211   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-01T17:43:37,212   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-01T17:43:37,241   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-01T17:43:37,244   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-01T17:43:37,245   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-01T17:43:37,266   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-01T17:43:37,270   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-01T17:43:37,272   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-01T17:43:37,273   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-01T17:43:37,276   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-01T17:43:37,279   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-01T17:43:37,283   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-01T17:43:37,284   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-01T17:43:37,288   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-01T17:43:37,289   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-01T17:43:37,321   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-01T17:43:37,325   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-01T17:43:37,327   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-01T17:43:37,329   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-01T17:43:37,331   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-01T17:43:37,335   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-01T17:43:37,338   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-01T17:43:37,341   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-01T17:43:37,346   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-01T17:43:37,347   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-01T17:43:37,354   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,356   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,459   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,465   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,469   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,473   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,536   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,540   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:43:37,543   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,545   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,549   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,552   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,557   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,561   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,564   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-01T17:43:37,567   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:43:37,568   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:43:37,571   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:43:37,581   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:43:37,590   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:43:37,594   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:43:37,607   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-03-01T17:43:37,607   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.26'
2024-03-01T17:43:37,607   running build_ext
2024-03-01T17:43:37,618   building 'moleculekit.interactions.hbonds' extension
2024-03-01T17:43:37,619   creating build/temp.linux-armv7l-cpython-39
2024-03-01T17:43:37,620   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-03-01T17:43:37,620   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-01T17:43:37,621   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-01T17:43:37,622   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-03-01T17:43:37,905   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:43:37,905                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:43:37,905                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:43:37,905                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2024-03-01T17:43:37,906   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:43:37,906      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:43:37,906         |  ^~~~~~~
2024-03-01T17:44:01,578   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-01T17:44:01,578   moleculekit/interactions/hbonds/hbonds.cpp:21001:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:44:01,578   21001 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-03-01T17:44:01,578         |                                                    ^~~~~~~~~~~~~~~
2024-03-01T17:44:01,579   moleculekit/interactions/hbonds/hbonds.cpp:20014:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-03-01T17:44:01,579   20014 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-03-01T17:44:01,579         |                                                         ^~~~~~~~~~~~~~~
2024-03-01T17:44:04,821   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:44:05,144   building 'moleculekit.interactions.pipi' extension
2024-03-01T17:44:05,145   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-01T17:44:05,145   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-03-01T17:44:05,381   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:44:05,382                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:44:05,382                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:44:05,382                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2024-03-01T17:44:05,382   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:44:05,382      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:44:05,382         |  ^~~~~~~
2024-03-01T17:44:33,718   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:44:34,057   building 'moleculekit.interactions.cationpi' extension
2024-03-01T17:44:34,058   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-01T17:44:34,058   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-03-01T17:44:34,297   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:44:34,297                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:44:34,297                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:44:34,298                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2024-03-01T17:44:34,298   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:44:34,298      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:44:34,298         |  ^~~~~~~
2024-03-01T17:45:02,519   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:45:02,849   building 'moleculekit.interactions.sigmahole' extension
2024-03-01T17:45:02,849   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-01T17:45:02,850   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-03-01T17:45:03,100   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:45:03,100                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:45:03,100                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:45:03,100                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2024-03-01T17:45:03,100   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:45:03,100      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:45:03,100         |  ^~~~~~~
2024-03-01T17:45:30,576   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:45:30,917   building 'moleculekit.wrapping' extension
2024-03-01T17:45:30,917   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-01T17:45:30,918   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-03-01T17:45:31,156   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:45:31,156                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:45:31,156                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:45:31,156                    from moleculekit/wrapping/wrapping.cpp:1230:
2024-03-01T17:45:31,156   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:45:31,157      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:45:31,157         |  ^~~~~~~
2024-03-01T17:45:57,156   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:45:57,386   building 'moleculekit.bondguesser_utils' extension
2024-03-01T17:45:57,386   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-01T17:45:57,387   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-03-01T17:45:57,630   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:45:57,630                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:45:57,630                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:45:57,630                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2024-03-01T17:45:57,630   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:45:57,630      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:45:57,630         |  ^~~~~~~
2024-03-01T17:45:59,185   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-03-01T17:45:59,186   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-01T17:45:59,186   19783 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-01T17:45:59,186         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T17:45:59,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-01T17:45:59,187   19795 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-01T17:45:59,187         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T17:45:59,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19807:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-01T17:45:59,188   19807 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-03-01T17:45:59,188         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T17:45:59,189   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19846:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,189   19846 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T17:45:59,189         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,190   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19885:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,190   19885 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T17:45:59,190         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,191   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19924:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,191   19924 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,191         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,192   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19963:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,192   19963 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T17:45:59,192         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,192   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19969:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,193   19969 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T17:45:59,193         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,194   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20010:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,194   20010 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T17:45:59,194         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,194   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20016:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,194   20016 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,195         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,195   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20057:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,196   20057 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T17:45:59,196         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,196   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20063:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,196   20063 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,197         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,197   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20104:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,198   20104 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T17:45:59,198         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,199   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20157:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,199   20157 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,199         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,200   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20204:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,200   20204 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,200         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,201   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,201   20245 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T17:45:59,201         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,202   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20251:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,202   20251 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T17:45:59,202         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,202   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20257:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,203   20257 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,203         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,203   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20304:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,204   20304 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-01T17:45:59,204         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,204   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20310:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,204   20310 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,205         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,205   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,205   20351 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-01T17:45:59,206         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,206   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20363:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,206   20363 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,206         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,207   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20416:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-01T17:45:59,208   20416 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-01T17:45:59,208         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,227   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-03-01T17:45:59,228   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21038:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:45:59,228   21038 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-03-01T17:45:59,228         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-03-01T17:45:59,228   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21075:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:45:59,229   21075 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-03-01T17:45:59,229         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-01T17:46:22,421   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:46:22,732   building 'moleculekit.atomselect_utils' extension
2024-03-01T17:46:22,733   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-01T17:46:22,734   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-03-01T17:46:22,973   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:46:22,974                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:46:22,974                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:46:22,974                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2024-03-01T17:46:22,974   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:46:22,974      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:46:22,974         |  ^~~~~~~
2024-03-01T17:46:24,685   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-03-01T17:46:24,685   moleculekit/atomselect_utils/atomselect_utils.cpp:23237:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:46:24,686   23237 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-03-01T17:46:24,686         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-01T17:46:24,690   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-01T17:46:24,691   moleculekit/atomselect_utils/atomselect_utils.cpp:23489:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:46:24,691   23489 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-01T17:46:24,691         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T17:46:24,696   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-01T17:46:24,696   moleculekit/atomselect_utils/atomselect_utils.cpp:23756:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:46:24,696   23756 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-01T17:46:24,697         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T17:46:55,113   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:46:55,452   building 'moleculekit.distance_utils' extension
2024-03-01T17:46:55,452   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-01T17:46:55,453   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-03-01T17:46:55,691   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:46:55,691                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:46:55,691                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:46:55,691                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2024-03-01T17:46:55,691   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:46:55,691      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:46:55,692         |  ^~~~~~~
2024-03-01T17:46:57,336   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-03-01T17:46:57,337   moleculekit/distance_utils/distance_utils.cpp:21341:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:46:57,337   21341 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-01T17:46:57,337         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T17:46:57,338   moleculekit/distance_utils/distance_utils.cpp:21353:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-01T17:46:57,338   21353 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-01T17:46:57,338         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-01T17:47:30,606   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:47:30,955   building 'moleculekit.occupancy_utils' extension
2024-03-01T17:47:30,956   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-01T17:47:30,956   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-03-01T17:47:31,205   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:47:31,205                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:47:31,205                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:47:31,206                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2024-03-01T17:47:31,206   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:47:31,206      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:47:31,206         |  ^~~~~~~
2024-03-01T17:47:54,347   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:47:54,565   building 'moleculekit.cython_utils' extension
2024-03-01T17:47:54,566   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-01T17:47:54,567   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-03-01T17:47:54,805   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:47:54,805                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:47:54,805                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:47:54,805                    from moleculekit/cython_utils/cython_utils.cpp:1230:
2024-03-01T17:47:54,806   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:47:54,806      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:47:54,806         |  ^~~~~~~
2024-03-01T17:48:20,511   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:48:20,856   building 'moleculekit.xtc' extension
2024-03-01T17:48:20,858   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-01T17:48:20,859   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-01T17:48:20,862   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-01T17:48:20,865   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-01T17:48:21,148   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,148      66 |  "OK",
2024-03-01T17:48:21,148         |  ^~~~
2024-03-01T17:48:21,148   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,149      67 |  "Header",
2024-03-01T17:48:21,149         |  ^~~~~~~~
2024-03-01T17:48:21,149   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,149      68 |  "String",
2024-03-01T17:48:21,149         |  ^~~~~~~~
2024-03-01T17:48:21,149   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,150      69 |  "Double",
2024-03-01T17:48:21,150         |  ^~~~~~~~
2024-03-01T17:48:21,150   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,150      70 |  "Integer",
2024-03-01T17:48:21,150         |  ^~~~~~~~~
2024-03-01T17:48:21,150   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,151      71 |  "Float",
2024-03-01T17:48:21,151         |  ^~~~~~~
2024-03-01T17:48:21,151   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,151      72 |  "Unsigned integer",
2024-03-01T17:48:21,151         |  ^~~~~~~~~~~~~~~~~~
2024-03-01T17:48:21,151   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,152      73 |  "Compressed 3D coordinate",
2024-03-01T17:48:21,152         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:21,152   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,152      74 |  "Closing file",
2024-03-01T17:48:21,152         |  ^~~~~~~~~~~~~~
2024-03-01T17:48:21,152   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,153      75 |  "Magic number",
2024-03-01T17:48:21,153         |  ^~~~~~~~~~~~~~
2024-03-01T17:48:21,153   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,153      76 |  "Not enough memory",
2024-03-01T17:48:21,153         |  ^~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:21,153   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,154      77 |  "End of file",
2024-03-01T17:48:21,154         |  ^~~~~~~~~~~~~
2024-03-01T17:48:21,154   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:21,154      78 |  "File not found"
2024-03-01T17:48:21,154         |  ^~~~~~~~~~~~~~~~
2024-03-01T17:48:21,162   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-01T17:48:21,162   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,163     459 |     while (size >= num && num_of_bits < 32)
2024-03-01T17:48:21,163         |            ~~~~~^~~~~~
2024-03-01T17:48:21,164   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-01T17:48:21,164   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,164     505 |     while (bytes[num_of_bytes] >= num)
2024-03-01T17:48:21,164         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T17:48:21,167   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-01T17:48:21,167   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,167     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-01T17:48:21,167         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:21,168   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,168     616 |   for (i = 0; i < num_of_bytes; i++)
2024-03-01T17:48:21,168         |               ~~^~~~~~~~~~~~~~
2024-03-01T17:48:21,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,169     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-03-01T17:48:21,169         |               ~~^~~~~~~~~~~~~~~~
2024-03-01T17:48:21,170   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-01T17:48:21,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,171     664 |   if (lastbits < num_of_bits)
2024-03-01T17:48:21,171         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-03-01T17:48:21,174   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-01T17:48:21,175   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,175     785 |  if(size3>xfp->buf1size)
2024-03-01T17:48:21,175         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:21,177   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,177     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:21,178         |                   ^
2024-03-01T17:48:21,180   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,181     932 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:21,181         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:21,181   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,181     935 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:21,182         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:21,182   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,182     938 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:21,182         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:21,183   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,183     945 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:21,183         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:21,183   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,184     948 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:21,184         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:21,184   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,184     951 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:21,184         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:21,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:21,186     756 |  int smallidx,  minidx, maxidx;
2024-03-01T17:48:21,186         |                 ^~~~~~
2024-03-01T17:48:21,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:21,186     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T17:48:21,186         |                         ^~~~~~
2024-03-01T17:48:21,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T17:48:21,187     763 |  int errval=1;
2024-03-01T17:48:21,187         |      ^~~~~~
2024-03-01T17:48:21,189   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-01T17:48:21,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,190    1011 |  if(size3>xfp->buf1size)
2024-03-01T17:48:21,190         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:21,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,192    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T17:48:21,192         |                     ~~~~~~~~^~~~~~~
2024-03-01T17:48:21,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,194    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T17:48:21,194         |                    ~~~~~~~~^~~~~~~
2024-03-01T17:48:21,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,195    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T17:48:21,195         |                    ~~~~~~~~^~~~~~~
2024-03-01T17:48:21,197   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,197    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-01T17:48:21,197         |                  ^
2024-03-01T17:48:21,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,198    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:21,198         |                   ^
2024-03-01T17:48:21,202   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,202    1275 |  if(tmp==(unsigned int)buf2[0])
2024-03-01T17:48:21,203         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:21,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:21,203    1001 |  int errval;
2024-03-01T17:48:21,203         |      ^~~~~~
2024-03-01T17:48:21,206   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-01T17:48:21,207   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,207    1316 |  if(size3>xfp->buf1size)
2024-03-01T17:48:21,207         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:21,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,209    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:21,210         |                   ^
2024-03-01T17:48:21,213   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:21,213    1289 |  int smallidx,  maxidx, minidx;
2024-03-01T17:48:21,213         |                         ^~~~~~
2024-03-01T17:48:21,213   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:21,213    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T17:48:21,214         |                         ^~~~~~
2024-03-01T17:48:21,214   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T17:48:21,214    1297 |  int errval=1;
2024-03-01T17:48:21,214         |      ^~~~~~
2024-03-01T17:48:21,216   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-01T17:48:21,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,217    1513 |  if(size3>xfp->buf1size) {
2024-03-01T17:48:21,217         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:21,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,222    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-01T17:48:21,222         |                  ^
2024-03-01T17:48:21,223   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:21,223    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:21,223         |                   ^
2024-03-01T17:48:21,227   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:21,227    1743 |  if(tmp==(unsigned int)buf2[0])
2024-03-01T17:48:21,227         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:21,228   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:21,228    1504 |  int errval=1;
2024-03-01T17:48:21,228         |      ^~~~~~
2024-03-01T17:48:23,467   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-03-01T17:48:23,724   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-03-01T17:48:24,295   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-03-01T17:48:24,295   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:24,296     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-03-01T17:48:24,296         |                  ~~~~~^~~~~~~~
2024-03-01T17:48:24,296   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-01T17:48:24,296     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-03-01T17:48:24,296         |      ^~~
2024-03-01T17:48:24,303   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-03-01T17:48:24,303   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-01T17:48:24,303     418 |  int nf3 = nframes * 3;
2024-03-01T17:48:24,303         |      ^~~
2024-03-01T17:48:24,305   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-03-01T17:48:24,305   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:24,305     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-03-01T17:48:24,306         |                   ~~~~~^~~~~~~~
2024-03-01T17:48:24,308   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:24,308     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-03-01T17:48:24,308         |                   ~~~~~^~~~~~~~
2024-03-01T17:48:24,308   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-03-01T17:48:24,308     491 |  int reading_index = 0;
2024-03-01T17:48:24,308         |      ^~~~~~~~~~~~~
2024-03-01T17:48:24,309   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-03-01T17:48:24,309     492 |  int writing_index = 0;
2024-03-01T17:48:24,309         |      ^~~~~~~~~~~~~
2024-03-01T17:48:25,091   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-03-01T17:48:25,331   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:48:25,331                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:48:25,331                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:48:25,331                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2024-03-01T17:48:25,331   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:48:25,332      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:48:25,332         |  ^~~~~~~
2024-03-01T17:48:45,559   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:48:45,887   building 'moleculekit.trr' extension
2024-03-01T17:48:45,889   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-03-01T17:48:46,011   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-01T17:48:46,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,253      66 |  "OK",
2024-03-01T17:48:46,253         |  ^~~~
2024-03-01T17:48:46,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,253      67 |  "Header",
2024-03-01T17:48:46,253         |  ^~~~~~~~
2024-03-01T17:48:46,254   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,254      68 |  "String",
2024-03-01T17:48:46,254         |  ^~~~~~~~
2024-03-01T17:48:46,254   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,254      69 |  "Double",
2024-03-01T17:48:46,254         |  ^~~~~~~~
2024-03-01T17:48:46,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,255      70 |  "Integer",
2024-03-01T17:48:46,255         |  ^~~~~~~~~
2024-03-01T17:48:46,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,255      71 |  "Float",
2024-03-01T17:48:46,255         |  ^~~~~~~
2024-03-01T17:48:46,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,256      72 |  "Unsigned integer",
2024-03-01T17:48:46,256         |  ^~~~~~~~~~~~~~~~~~
2024-03-01T17:48:46,256   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,256      73 |  "Compressed 3D coordinate",
2024-03-01T17:48:46,256         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:46,256   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,256      74 |  "Closing file",
2024-03-01T17:48:46,257         |  ^~~~~~~~~~~~~~
2024-03-01T17:48:46,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,257      75 |  "Magic number",
2024-03-01T17:48:46,257         |  ^~~~~~~~~~~~~~
2024-03-01T17:48:46,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,257      76 |  "Not enough memory",
2024-03-01T17:48:46,257         |  ^~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:46,258   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,258      77 |  "End of file",
2024-03-01T17:48:46,258         |  ^~~~~~~~~~~~~
2024-03-01T17:48:46,258   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-01T17:48:46,258      78 |  "File not found"
2024-03-01T17:48:46,258         |  ^~~~~~~~~~~~~~~~
2024-03-01T17:48:46,262   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-01T17:48:46,262   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,262     459 |     while (size >= num && num_of_bits < 32)
2024-03-01T17:48:46,263         |            ~~~~~^~~~~~
2024-03-01T17:48:46,263   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-01T17:48:46,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,263     505 |     while (bytes[num_of_bytes] >= num)
2024-03-01T17:48:46,263         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T17:48:46,265   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-01T17:48:46,265   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,266     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-01T17:48:46,266         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:46,266   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,266     616 |   for (i = 0; i < num_of_bytes; i++)
2024-03-01T17:48:46,266         |               ~~^~~~~~~~~~~~~~
2024-03-01T17:48:46,266   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,267     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-03-01T17:48:46,267         |               ~~^~~~~~~~~~~~~~~~
2024-03-01T17:48:46,267   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-01T17:48:46,267   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,267     664 |   if (lastbits < num_of_bits)
2024-03-01T17:48:46,267         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-03-01T17:48:46,270   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-01T17:48:46,271   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,271     785 |  if(size3>xfp->buf1size)
2024-03-01T17:48:46,271         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:46,272   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,273     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:46,273         |                   ^
2024-03-01T17:48:46,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,275     932 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:46,275         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:46,276   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,276     935 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:46,276         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:46,276   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,276     938 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:46,276         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:46,276   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,277     945 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:46,277         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:46,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,277     948 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:46,277         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:46,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,277     951 |     if(countmjh >= size3 ) { return -1; }
2024-03-01T17:48:46,277         |        ~~~~~~~~~^~~~~~~~
2024-03-01T17:48:46,278   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:46,278     756 |  int smallidx,  minidx, maxidx;
2024-03-01T17:48:46,278         |                 ^~~~~~
2024-03-01T17:48:46,278   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:46,278     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T17:48:46,278         |                         ^~~~~~
2024-03-01T17:48:46,278   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T17:48:46,278     763 |  int errval=1;
2024-03-01T17:48:46,279         |      ^~~~~~
2024-03-01T17:48:46,279   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-01T17:48:46,279   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,280    1011 |  if(size3>xfp->buf1size)
2024-03-01T17:48:46,280         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:46,281   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,282    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T17:48:46,282         |                     ~~~~~~~~^~~~~~~
2024-03-01T17:48:46,282   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,282    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T17:48:46,282         |                    ~~~~~~~~^~~~~~~
2024-03-01T17:48:46,283   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,283    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-01T17:48:46,283         |                    ~~~~~~~~^~~~~~~
2024-03-01T17:48:46,284   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,284    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-01T17:48:46,285         |                  ^
2024-03-01T17:48:46,285   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,285    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:46,285         |                   ^
2024-03-01T17:48:46,288   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,289    1275 |  if(tmp==(unsigned int)buf2[0])
2024-03-01T17:48:46,289         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:46,289   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:46,289    1001 |  int errval;
2024-03-01T17:48:46,289         |      ^~~~~~
2024-03-01T17:48:46,292   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-01T17:48:46,292   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,292    1316 |  if(size3>xfp->buf1size)
2024-03-01T17:48:46,292         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:46,294   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,294    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:46,294         |                   ^
2024-03-01T17:48:46,297   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:46,297    1289 |  int smallidx,  maxidx, minidx;
2024-03-01T17:48:46,297         |                         ^~~~~~
2024-03-01T17:48:46,297   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:46,297    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-01T17:48:46,297         |                         ^~~~~~
2024-03-01T17:48:46,297   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-01T17:48:46,298    1297 |  int errval=1;
2024-03-01T17:48:46,298         |      ^~~~~~
2024-03-01T17:48:46,299   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-01T17:48:46,299   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,299    1513 |  if(size3>xfp->buf1size) {
2024-03-01T17:48:46,299         |     ~~~~~^~~~~~~~~~~~~~
2024-03-01T17:48:46,303   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,303    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-01T17:48:46,303         |                  ^
2024-03-01T17:48:46,304   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:48:46,304    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-01T17:48:46,304         |                   ^
2024-03-01T17:48:46,307   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:48:46,308    1743 |  if(tmp==(unsigned int)buf2[0])
2024-03-01T17:48:46,308         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:48:46,308   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-01T17:48:46,308    1504 |  int errval=1;
2024-03-01T17:48:46,308         |      ^~~~~~
2024-03-01T17:48:48,551   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-03-01T17:48:48,651   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-03-01T17:48:48,652   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-01T17:48:48,652     111 |         if (slen != strlen(version)+1)
2024-03-01T17:48:48,652         |                  ^~
2024-03-01T17:48:48,652   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-01T17:48:48,652     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-03-01T17:48:48,652         |                                              ^~
2024-03-01T17:48:49,225   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-03-01T17:48:49,540   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:48:49,540                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:48:49,541                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:48:49,541                    from moleculekit/fileformats/xtc/trr.c:1226:
2024-03-01T17:48:49,541   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:48:49,541      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:48:49,541         |  ^~~~~~~
2024-03-01T17:48:50,159   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-03-01T17:48:50,167   moleculekit/fileformats/xtc/trr.c:16334:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-01T17:48:50,167   16334 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-03-01T17:48:50,167         |                                     ^~
2024-03-01T17:49:10,487   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-03-01T17:49:10,488   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:10,488    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-01T17:49:10,488         |                                        ^~~~~~~~~~~~~~~
2024-03-01T17:49:10,496   moleculekit/fileformats/xtc/trr.c:14242:7: note: ‘__pyx_v_status’ was declared here
2024-03-01T17:49:10,496   14242 |   int __pyx_v_status;
2024-03-01T17:49:10,496         |       ^~~~~~~~~~~~~~
2024-03-01T17:49:20,811   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-03-01T17:49:20,818   moleculekit/fileformats/xtc/trr.c:11541:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,818   11541 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-01T17:49:20,818         |                   ^
2024-03-01T17:49:20,825   moleculekit/fileformats/xtc/trr.c:11537:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,825   11537 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T17:49:20,825         |                   ^
2024-03-01T17:49:20,826   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,826    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-01T17:49:20,826         |                                                                                               ^
2024-03-01T17:49:20,832   moleculekit/fileformats/xtc/trr.c:10073:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-03-01T17:49:20,832   10073 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-01T17:49:20,832         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-01T17:49:20,838   moleculekit/fileformats/xtc/trr.c:11531:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,838   11531 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-03-01T17:49:20,838         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T17:49:20,845   moleculekit/fileformats/xtc/trr.c:11484:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,845   11484 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-01T17:49:20,845         |                   ^
2024-03-01T17:49:20,852   moleculekit/fileformats/xtc/trr.c:11480:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,852   11480 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T17:49:20,852         |                   ^
2024-03-01T17:49:20,853   moleculekit/fileformats/xtc/trr.c:2491:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,853    2491 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-01T17:49:20,853         |                                                                                               ^
2024-03-01T17:49:20,858   moleculekit/fileformats/xtc/trr.c:10089:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-03-01T17:49:20,859   10089 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-01T17:49:20,859         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-01T17:49:20,864   moleculekit/fileformats/xtc/trr.c:11474:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,865   11474 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-03-01T17:49:20,865         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-01T17:49:20,870   moleculekit/fileformats/xtc/trr.c:11873:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,871   11873 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T17:49:20,871         |                 ^
2024-03-01T17:49:20,877   moleculekit/fileformats/xtc/trr.c:11869:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,878   11869 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-01T17:49:20,878         |                 ^
2024-03-01T17:49:20,884   moleculekit/fileformats/xtc/trr.c:11714:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,885   11714 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T17:49:20,885         |                   ^
2024-03-01T17:49:20,891   moleculekit/fileformats/xtc/trr.c:11710:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,892   11710 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-01T17:49:20,892         |                   ^
2024-03-01T17:49:20,897   moleculekit/fileformats/xtc/trr.c:11766:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,898   11766 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-01T17:49:20,898         |                   ^
2024-03-01T17:49:20,905   moleculekit/fileformats/xtc/trr.c:11762:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:20,905   11762 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-01T17:49:20,905         |                   ^
2024-03-01T17:49:27,413   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:49:27,639   building 'moleculekit.dcd' extension
2024-03-01T17:49:27,640   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-01T17:49:27,641   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-01T17:49:27,642   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-03-01T17:49:28,053   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:49:28,054                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:49:28,054                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:49:28,054                    from moleculekit/fileformats/dcd/dcd.c:1221:
2024-03-01T17:49:28,054   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:49:28,054      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:49:28,055         |  ^~~~~~~
2024-03-01T17:49:29,093   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-03-01T17:49:29,093                    from moleculekit/fileformats/dcd/dcd.c:1227:
2024-03-01T17:49:29,093   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,093     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-01T17:49:29,094         |            ^~~~~~~~~~~~~
2024-03-01T17:49:29,094   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,094     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-01T17:49:29,094         |            ^~~~~~~~~~~~~~
2024-03-01T17:49:29,094   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,094     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-03-01T17:49:29,095         |            ^~~~~~~~~~~~~~~
2024-03-01T17:49:29,095   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,095     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-03-01T17:49:29,095         |                   ^~~~~~~~~
2024-03-01T17:49:29,095   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,095     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-03-01T17:49:29,095         |                   ^~~~~~~~~
2024-03-01T17:49:29,095   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,096     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-03-01T17:49:29,096         |                   ^~~~~~~~~
2024-03-01T17:49:29,096   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,096     394 | static int fio_fclose(fio_fd fd) {
2024-03-01T17:49:29,096         |            ^~~~~~~~~~
2024-03-01T17:49:29,096   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-03-01T17:49:29,096     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-03-01T17:49:29,096         |            ^~~~~~~~
2024-03-01T17:49:41,753   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-03-01T17:49:41,753   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:49:41,754    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-01T17:49:41,754         |                                        ^~~~~~~~~~~~~~~
2024-03-01T17:49:41,758   moleculekit/fileformats/dcd/dcd.c:8004:7: note: ‘__pyx_v_i’ was declared here
2024-03-01T17:49:41,758    8004 |   int __pyx_v_i;
2024-03-01T17:49:41,758         |       ^~~~~~~~~
2024-03-01T17:49:45,095   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-03-01T17:49:45,282   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-03-01T17:49:45,283   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:49:45,283     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-01T17:49:45,283         |                                                       ^~
2024-03-01T17:49:45,283   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:49:45,283     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-01T17:49:45,284         |                                                      ^~
2024-03-01T17:49:45,284   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:49:45,284     194 |     if (input_integer[0] != dcdcordmagic)
2024-03-01T17:49:45,284         |                          ^~
2024-03-01T17:49:45,287   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:49:45,287     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-01T17:49:45,287         |                                               ^~
2024-03-01T17:49:45,288   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-01T17:49:45,288     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-01T17:49:45,288         |                                               ^~
2024-03-01T17:49:45,291   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-03-01T17:49:45,292   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:49:45,292     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-03-01T17:49:45,292         |                       ^~
2024-03-01T17:49:45,292   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-01T17:49:45,292     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-03-01T17:49:45,292         |                                                 ^~
2024-03-01T17:49:45,315   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-03-01T17:49:45,315   At top level:
2024-03-01T17:49:45,315   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-03-01T17:49:45,315      96 | static void swap2_aligned(void *v, long ndata) {
2024-03-01T17:49:45,316         |             ^~~~~~~~~~~~~
2024-03-01T17:49:45,316   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-03-01T17:49:45,316      32 | static void swap2_unaligned(void *v, long ndata) {
2024-03-01T17:49:45,316         |             ^~~~~~~~~~~~~~~
2024-03-01T17:49:45,316   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-03-01T17:49:45,316   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-01T17:49:45,316     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-01T17:49:45,317         |            ^~~~~~~~~~~~~
2024-03-01T17:49:45,317   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-01T17:49:45,317     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-01T17:49:45,317         |            ^~~~~~~~~~~~~~
2024-03-01T17:49:46,426   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:49:46,574   building 'moleculekit.binpos' extension
2024-03-01T17:49:46,575   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-01T17:49:46,576   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-01T17:49:46,577   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-03-01T17:49:46,907   In file included from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-01T17:49:46,907                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-01T17:49:46,907                    from /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-01T17:49:46,907                    from moleculekit/fileformats/binpos/binpos.c:1221:
2024-03-01T17:49:46,907   /tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-01T17:49:46,907      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-01T17:49:46,908         |  ^~~~~~~
2024-03-01T17:50:00,339   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-03-01T17:50:00,343   moleculekit/fileformats/binpos/binpos.c:8027:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:50:00,344    8027 |   if (__pyx_t_1) {
2024-03-01T17:50:00,344         |      ^
2024-03-01T17:50:00,348   moleculekit/fileformats/binpos/binpos.c:7504:7: note: ‘__pyx_v_status’ was declared here
2024-03-01T17:50:00,348    7504 |   int __pyx_v_status;
2024-03-01T17:50:00,348         |       ^~~~~~~~~~~~~~
2024-03-01T17:50:00,348   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-01T17:50:00,349    1123 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-01T17:50:00,349         |                                        ^~~~~~~~~~~~~~~
2024-03-01T17:50:00,353   moleculekit/fileformats/binpos/binpos.c:7501:7: note: ‘__pyx_v_i’ was declared here
2024-03-01T17:50:00,353    7501 |   int __pyx_v_i;
2024-03-01T17:50:00,353         |       ^~~~~~~~~
2024-03-01T17:50:02,690   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-03-01T17:50:02,996   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:50:03,149   building 'moleculekit.tmalign' extension
2024-03-01T17:50:03,150   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-01T17:50:03,151   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-01T17:50:03,153   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-03-01T17:50:35,125   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3hj_m8wa/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-03-01T17:50:53,778   In file included from /usr/include/c++/10/vector:72,
2024-03-01T17:50:53,778                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-03-01T17:50:53,779   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-03-01T17:50:53,779   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-03-01T17:50:53,779     426 |       vector<_Tp, _Alloc>::
2024-03-01T17:50:53,779         |       ^~~~~~~~~~~~~~~~~~~
2024-03-01T17:50:54,356   In file included from /usr/include/c++/10/vector:67,
2024-03-01T17:50:54,356                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2024-03-01T17:50:54,356   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-01T17:50:54,357   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-01T17:50:54,357    1198 |    _M_realloc_insert(end(), __x);
2024-03-01T17:50:54,357         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T17:50:54,357   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-01T17:50:54,357    1198 |    _M_realloc_insert(end(), __x);
2024-03-01T17:50:54,358         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T17:50:54,359   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-01T17:50:54,360    1198 |    _M_realloc_insert(end(), __x);
2024-03-01T17:50:54,360         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-01T17:50:56,871   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-03-01T17:50:57,396   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-03-01T17:50:57,396   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.26'
2024-03-01T17:50:57,396   installing to build/bdist.linux-armv7l/wheel
2024-03-01T17:50:57,397   running install
2024-03-01T17:50:57,422   running install_lib
2024-03-01T17:50:57,431   creating build/bdist.linux-armv7l
2024-03-01T17:50:57,432   creating build/bdist.linux-armv7l/wheel
2024-03-01T17:50:57,437   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:57,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:57,452   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,708   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-01T17:50:57,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-01T17:50:57,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-01T17:50:57,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-01T17:50:57,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:57,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:57,834   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:57,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:57,919   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-01T17:50:57,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-01T17:50:57,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-01T17:50:57,985   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-01T17:50:57,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-01T17:50:58,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-01T17:50:58,054   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-01T17:50:58,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-01T17:50:58,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-01T17:50:58,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:58,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:58,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:58,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:58,279   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-01T17:50:58,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-01T17:50:58,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-01T17:50:58,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-01T17:50:58,437   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-01T17:50:58,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-01T17:50:58,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-01T17:50:58,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,529   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T17:50:58,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T17:50:58,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T17:50:58,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T17:50:58,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-01T17:50:58,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,606   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T17:50:58,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T17:50:58,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T17:50:58,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-01T17:50:58,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,659   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-01T17:50:58,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-01T17:50:58,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-01T17:50:58,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,726   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T17:50:58,727   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T17:50:58,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T17:50:58,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T17:50:58,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-01T17:50:58,758   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-01T17:50:58,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-01T17:50:58,765   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T17:50:58,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T17:50:58,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T17:50:58,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-01T17:50:58,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T17:50:58,777   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T17:50:58,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T17:50:58,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T17:50:58,784   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-01T17:50:58,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-01T17:50:58,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-01T17:50:58,809   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T17:50:58,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T17:50:58,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T17:50:58,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T17:50:58,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T17:50:58,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-01T17:50:58,823   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,833   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T17:50:58,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T17:50:58,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T17:50:58,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T17:50:58,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T17:50:58,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-01T17:50:58,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-01T17:50:58,902   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-01T17:50:58,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T17:50:58,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-01T17:50:58,919   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-01T17:50:58,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-01T17:50:58,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-01T17:50:58,940   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-01T17:50:58,942   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T17:50:58,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T17:50:58,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T17:50:58,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T17:50:58,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-01T17:50:58,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-01T17:50:58,955   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T17:50:58,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T17:50:58,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T17:50:58,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T17:50:58,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-01T17:50:58,969   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-01T17:50:58,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-01T17:50:58,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-01T17:50:58,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:58,979   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-01T17:50:58,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-01T17:50:58,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-01T17:50:59,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,081   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,083   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T17:50:59,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T17:50:59,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T17:50:59,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T17:50:59,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-01T17:50:59,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-01T17:50:59,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:50:59,328   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-01T17:50:59,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-01T17:50:59,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-01T17:50:59,599   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T17:50:59,602   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-01T17:50:59,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-01T17:50:59,606   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-03-01T17:50:59,611   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:50:59,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,123   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,434   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,611   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-01T17:51:00,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T17:51:00,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T17:51:00,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-01T17:51:01,040   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,082   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-01T17:51:01,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,210   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T17:51:01,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T17:51:01,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T17:51:01,247   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-01T17:51:01,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-01T17:51:01,253   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-01T17:51:01,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-01T17:51:01,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-01T17:51:01,259   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-01T17:51:01,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-01T17:51:01,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-01T17:51:01,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-01T17:51:01,333   running install_egg_info
2024-03-01T17:51:01,339   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.26-py3.9.egg-info
2024-03-01T17:51:01,352   running install_scripts
2024-03-01T17:51:01,401   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.26.dist-info/WHEEL
2024-03-01T17:51:01,404   creating '/tmp/pip-wheel-tnquqshb/.tmp-xt2pverp/moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-01T17:51:01,407   adding 'moleculekit/__init__.py'
2024-03-01T17:51:01,409   adding 'moleculekit/_version.py'
2024-03-01T17:51:01,410   adding 'moleculekit/align.py'
2024-03-01T17:51:01,719   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:01,884   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:01,891   adding 'moleculekit/bondguesser.py'
2024-03-01T17:51:02,133   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:02,142   adding 'moleculekit/config.py'
2024-03-01T17:51:02,403   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:02,574   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:02,583   adding 'moleculekit/dihedral.py'
2024-03-01T17:51:02,587   adding 'moleculekit/distance.py'
2024-03-01T17:51:02,916   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:02,928   adding 'moleculekit/home.py'
2024-03-01T17:51:02,929   adding 'moleculekit/logging.ini'
2024-03-01T17:51:02,943   adding 'moleculekit/molecule.py'
2024-03-01T17:51:03,169   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:03,178   adding 'moleculekit/opm.py'
2024-03-01T17:51:03,180   adding 'moleculekit/periodictable.py'
2024-03-01T17:51:03,181   adding 'moleculekit/pymolgraphics.py'
2024-03-01T17:51:03,182   adding 'moleculekit/rcsb.py'
2024-03-01T17:51:03,184   adding 'moleculekit/rdkitintegration.py'
2024-03-01T17:51:03,197   adding 'moleculekit/readers.py'
2024-03-01T17:51:03,803   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:04,114   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:04,126   adding 'moleculekit/util.py'
2024-03-01T17:51:04,128   adding 'moleculekit/version.py'
2024-03-01T17:51:04,129   adding 'moleculekit/viewer.py'
2024-03-01T17:51:04,130   adding 'moleculekit/vmd_wrapper'
2024-03-01T17:51:04,132   adding 'moleculekit/vmdgraphics.py'
2024-03-01T17:51:04,134   adding 'moleculekit/vmdviewer.py'
2024-03-01T17:51:04,386   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:04,402   adding 'moleculekit/writers.py'
2024-03-01T17:51:04,672   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:04,684   adding 'moleculekit/atomselect/__init__.py'
2024-03-01T17:51:04,686   adding 'moleculekit/atomselect/analyze.py'
2024-03-01T17:51:04,689   adding 'moleculekit/atomselect/atomselect.py'
2024-03-01T17:51:04,695   adding 'moleculekit/atomselect/languageparser.py'
2024-03-01T17:51:04,805   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-03-01T17:51:04,820   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-03-01T17:51:04,918   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-03-01T17:51:04,931   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-03-01T17:51:05,028   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-03-01T17:51:05,040   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-03-01T17:51:05,150   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-03-01T17:51:05,162   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-03-01T17:51:05,170   adding 'moleculekit/fileformats/__init__.py'
2024-03-01T17:51:05,177   adding 'moleculekit/fileformats/netcdf.py'
2024-03-01T17:51:05,183   adding 'moleculekit/fileformats/utils.py'
2024-03-01T17:51:05,247   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-03-01T17:51:05,256   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-03-01T17:51:05,261   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-03-01T17:51:05,268   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-03-01T17:51:05,273   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-03-01T17:51:05,282   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-03-01T17:51:05,291   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-03-01T17:51:05,360   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-03-01T17:51:05,370   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-03-01T17:51:05,373   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-03-01T17:51:05,377   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-03-01T17:51:05,380   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-03-01T17:51:05,383   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-03-01T17:51:05,386   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-03-01T17:51:05,392   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-03-01T17:51:05,403   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-03-01T17:51:05,503   adding 'moleculekit/fileformats/xtc/trr.c'
2024-03-01T17:51:05,514   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-03-01T17:51:05,516   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-03-01T17:51:05,517   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-03-01T17:51:05,607   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-03-01T17:51:05,616   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-03-01T17:51:05,619   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-03-01T17:51:05,624   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-03-01T17:51:05,625   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-03-01T17:51:05,628   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-03-01T17:51:05,629   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-03-01T17:51:05,630   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-03-01T17:51:05,631   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-03-01T17:51:05,633   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-03-01T17:51:05,640   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-03-01T17:51:05,642   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-03-01T17:51:05,644   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-03-01T17:51:05,646   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-03-01T17:51:05,648   adding 'moleculekit/interactions/__init__.py'
2024-03-01T17:51:05,935   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:06,204   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:06,216   adding 'moleculekit/interactions/interactions.py'
2024-03-01T17:51:06,498   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:06,786   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-03-01T17:51:06,887   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-03-01T17:51:06,900   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-03-01T17:51:06,997   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-03-01T17:51:07,008   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-03-01T17:51:07,109   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-03-01T17:51:07,122   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-03-01T17:51:07,218   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-03-01T17:51:07,230   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-03-01T17:51:07,322   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-03-01T17:51:07,333   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-03-01T17:51:07,341   adding 'moleculekit/pdbx/__init__.py'
2024-03-01T17:51:07,350   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-03-01T17:51:07,357   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-03-01T17:51:07,363   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-03-01T17:51:07,367   adding 'moleculekit/pdbx/reader/__init__.py'
2024-03-01T17:51:07,377   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-03-01T17:51:07,382   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-03-01T17:51:07,385   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-03-01T17:51:07,387   adding 'moleculekit/pdbx/tests/__init__.py'
2024-03-01T17:51:07,389   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-03-01T17:51:07,390   adding 'moleculekit/pdbx/writer/__init__.py'
2024-03-01T17:51:07,399   adding 'moleculekit/ply/__init__.py'
2024-03-01T17:51:07,858   adding 'moleculekit/ply/lex.py'
2024-03-01T17:51:08,566   adding 'moleculekit/ply/yacc.py'
2024-03-01T17:51:09,088   adding 'moleculekit/projections/__init__.py'
2024-03-01T17:51:09,250   adding 'moleculekit/projections/metriccoordinate.py'
2024-03-01T17:51:09,380   adding 'moleculekit/projections/metricdihedral.py'
2024-03-01T17:51:09,451   adding 'moleculekit/projections/metricdistance.py'
2024-03-01T17:51:09,641   adding 'moleculekit/projections/metricfluctuation.py'
2024-03-01T17:51:09,647   adding 'moleculekit/projections/metricgyration.py'
2024-03-01T17:51:09,658   adding 'moleculekit/projections/metricplumed2.py'
2024-03-01T17:51:09,662   adding 'moleculekit/projections/metricrmsd.py'
2024-03-01T17:51:09,666   adding 'moleculekit/projections/metricsasa.py'
2024-03-01T17:51:09,670   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-03-01T17:51:09,674   adding 'moleculekit/projections/metricshell.py'
2024-03-01T17:51:09,677   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-03-01T17:51:09,679   adding 'moleculekit/projections/metrictmscore.py'
2024-03-01T17:51:09,681   adding 'moleculekit/projections/projection.py'
2024-03-01T17:51:09,684   adding 'moleculekit/projections/util.py'
2024-03-01T17:51:09,688   adding 'moleculekit/share/ALA.cif'
2024-03-01T17:51:09,690   adding 'moleculekit/share/backbone.cif'
2024-03-01T17:51:11,032   adding 'moleculekit/share/opm_sequences.json'
2024-03-01T17:51:11,117   adding 'moleculekit/share/atomselect/atomselect.json'
2024-03-01T17:51:11,122   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-03-01T17:51:11,123   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-03-01T17:51:11,125   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-03-01T17:51:11,126   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-03-01T17:51:11,127   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-03-01T17:51:11,128   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-03-01T17:51:11,129   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-03-01T17:51:11,131   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-03-01T17:51:11,132   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-03-01T17:51:11,133   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-03-01T17:51:11,134   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-03-01T17:51:11,135   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-03-01T17:51:11,137   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-03-01T17:51:11,138   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-03-01T17:51:11,139   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-03-01T17:51:11,140   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-03-01T17:51:11,141   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-03-01T17:51:11,143   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-03-01T17:51:11,144   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-03-01T17:51:11,145   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-03-01T17:51:11,146   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-03-01T17:51:11,148   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-03-01T17:51:11,149   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-03-01T17:51:11,150   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-03-01T17:51:11,151   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-03-01T17:51:11,152   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-03-01T17:51:11,154   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-03-01T17:51:11,155   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-03-01T17:51:11,156   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-03-01T17:51:11,157   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-03-01T17:51:11,159   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-03-01T17:51:11,160   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-03-01T17:51:11,161   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-03-01T17:51:11,162   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-03-01T17:51:11,163   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-03-01T17:51:11,164   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-03-01T17:51:11,166   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-03-01T17:51:11,167   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-03-01T17:51:11,168   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-03-01T17:51:11,169   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-03-01T17:51:11,171   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-03-01T17:51:11,172   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-03-01T17:51:11,173   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-03-01T17:51:11,174   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-03-01T17:51:11,175   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-03-01T17:51:11,177   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-03-01T17:51:11,178   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-03-01T17:51:11,179   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-03-01T17:51:11,181   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-03-01T17:51:11,182   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-03-01T17:51:11,183   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-03-01T17:51:11,185   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-03-01T17:51:11,186   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-03-01T17:51:11,187   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-03-01T17:51:11,189   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-03-01T17:51:11,190   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-03-01T17:51:11,191   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-03-01T17:51:11,192   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-03-01T17:51:11,194   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-03-01T17:51:11,195   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-03-01T17:51:11,196   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-03-01T17:51:11,197   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-03-01T17:51:11,198   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-03-01T17:51:11,199   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-03-01T17:51:11,201   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-03-01T17:51:11,202   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-03-01T17:51:11,203   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-03-01T17:51:11,204   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-03-01T17:51:11,206   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-03-01T17:51:11,207   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-03-01T17:51:11,208   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-03-01T17:51:11,209   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-03-01T17:51:11,211   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-03-01T17:51:11,212   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-03-01T17:51:11,213   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-03-01T17:51:11,214   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-03-01T17:51:11,215   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-03-01T17:51:11,217   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-03-01T17:51:11,218   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-03-01T17:51:11,219   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-03-01T17:51:11,221   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-03-01T17:51:11,222   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-03-01T17:51:11,223   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-03-01T17:51:11,224   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-03-01T17:51:11,226   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-03-01T17:51:11,227   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-03-01T17:51:11,228   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-03-01T17:51:11,229   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-03-01T17:51:11,231   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-03-01T17:51:11,232   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-03-01T17:51:11,233   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-03-01T17:51:11,234   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-03-01T17:51:11,236   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-03-01T17:51:11,237   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-03-01T17:51:11,238   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-03-01T17:51:11,240   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-03-01T17:51:11,241   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-03-01T17:51:11,242   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-03-01T17:51:11,243   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-03-01T17:51:11,245   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-03-01T17:51:11,246   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-03-01T17:51:11,247   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-03-01T17:51:11,249   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-03-01T17:51:11,250   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-03-01T17:51:11,251   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-03-01T17:51:11,252   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-03-01T17:51:11,253   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-03-01T17:51:11,255   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-03-01T17:51:11,256   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-03-01T17:51:11,257   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-03-01T17:51:11,258   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-03-01T17:51:11,260   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-03-01T17:51:11,262   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-03-01T17:51:11,263   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-03-01T17:51:11,264   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-03-01T17:51:11,265   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-03-01T17:51:11,267   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-03-01T17:51:11,268   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-03-01T17:51:11,269   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-03-01T17:51:11,270   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-03-01T17:51:11,271   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-03-01T17:51:11,272   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-03-01T17:51:11,274   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-03-01T17:51:11,275   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-03-01T17:51:11,276   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-03-01T17:51:11,277   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-03-01T17:51:11,279   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-03-01T17:51:11,280   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-03-01T17:51:11,281   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-03-01T17:51:11,282   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-03-01T17:51:11,284   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-03-01T17:51:11,285   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-03-01T17:51:11,286   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-03-01T17:51:11,287   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-03-01T17:51:11,289   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-03-01T17:51:11,290   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-03-01T17:51:11,291   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-03-01T17:51:11,292   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-03-01T17:51:11,294   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-03-01T17:51:11,295   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-03-01T17:51:11,296   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-03-01T17:51:11,297   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-03-01T17:51:11,298   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-03-01T17:51:11,300   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-03-01T17:51:11,301   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-03-01T17:51:11,302   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-03-01T17:51:11,303   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-03-01T17:51:11,304   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-03-01T17:51:11,306   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-03-01T17:51:11,307   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-03-01T17:51:11,308   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-03-01T17:51:11,309   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-03-01T17:51:11,310   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-03-01T17:51:11,311   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-03-01T17:51:11,313   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-03-01T17:51:11,314   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-03-01T17:51:11,315   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-03-01T17:51:11,316   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-03-01T17:51:11,318   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-03-01T17:51:11,319   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-03-01T17:51:11,320   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-03-01T17:51:11,321   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-03-01T17:51:11,323   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-03-01T17:51:11,324   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-03-01T17:51:11,325   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-03-01T17:51:11,326   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-03-01T17:51:11,328   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-03-01T17:51:11,329   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-03-01T17:51:11,330   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-03-01T17:51:11,331   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-03-01T17:51:11,333   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-03-01T17:51:11,334   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-03-01T17:51:11,335   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-03-01T17:51:11,336   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-03-01T17:51:11,337   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-03-01T17:51:11,339   adding 'moleculekit/smallmol/__init__.py'
2024-03-01T17:51:11,344   adding 'moleculekit/smallmol/smallmol.py'
2024-03-01T17:51:11,347   adding 'moleculekit/smallmol/smallmollib.py'
2024-03-01T17:51:11,349   adding 'moleculekit/smallmol/test_smallmol.py'
2024-03-01T17:51:11,351   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-03-01T17:51:11,353   adding 'moleculekit/smallmol/util.py'
2024-03-01T17:51:11,355   adding 'moleculekit/smallmol/tools/__init__.py'
2024-03-01T17:51:11,357   adding 'moleculekit/smallmol/tools/clustering.py'
2024-03-01T17:51:11,358   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-03-01T17:51:11,359   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-03-01T17:51:11,450   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-03-01T17:51:11,458   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-03-01T17:51:11,460   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-03-01T17:51:11,461   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-03-01T17:51:11,479   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-03-01T17:51:11,482   adding 'moleculekit/tools/__init__.py'
2024-03-01T17:51:11,485   adding 'moleculekit/tools/atomtyper.py'
2024-03-01T17:51:11,487   adding 'moleculekit/tools/autosegment.py'
2024-03-01T17:51:11,489   adding 'moleculekit/tools/crystalpacking.py'
2024-03-01T17:51:11,492   adding 'moleculekit/tools/detect.py'
2024-03-01T17:51:11,494   adding 'moleculekit/tools/docking.py'
2024-03-01T17:51:11,496   adding 'moleculekit/tools/graphalignment.py'
2024-03-01T17:51:11,498   adding 'moleculekit/tools/hhblitsprofile.py'
2024-03-01T17:51:11,499   adding 'moleculekit/tools/modelling.py'
2024-03-01T17:51:11,501   adding 'moleculekit/tools/moleculechecks.py'
2024-03-01T17:51:11,507   adding 'moleculekit/tools/preparation.py'
2024-03-01T17:51:11,509   adding 'moleculekit/tools/preparation_customres.py'
2024-03-01T17:51:11,511   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-03-01T17:51:11,514   adding 'moleculekit/tools/voxeldescriptors.py'
2024-03-01T17:51:11,516   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-03-01T17:51:11,517   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-03-01T17:51:11,609   adding 'moleculekit/wrapping/wrapping.cpp'
2024-03-01T17:51:11,618   adding 'moleculekit/wrapping/wrapping.pyx'
2024-03-01T17:51:11,621   adding 'moleculekit-1.8.26.dist-info/LICENSE'
2024-03-01T17:51:11,622   adding 'moleculekit-1.8.26.dist-info/METADATA'
2024-03-01T17:51:11,623   adding 'moleculekit-1.8.26.dist-info/WHEEL'
2024-03-01T17:51:11,624   adding 'moleculekit-1.8.26.dist-info/top_level.txt'
2024-03-01T17:51:11,629   adding 'moleculekit-1.8.26.dist-info/RECORD'
2024-03-01T17:51:11,934   removing build/bdist.linux-armv7l/wheel
2024-03-01T17:51:12,220   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-03-01T17:51:12,825   Created wheel for moleculekit: filename=moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl size=14902535 sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553
2024-03-01T17:51:12,826   Stored in directory: /tmp/pip-ephem-wheel-cache-3w8b6k6f/wheels/da/62/f4/f1b2ba93b3260894871a8d207521ad14b85f0617396d85c0ff
2024-03-01T17:51:12,853 Successfully built moleculekit
2024-03-01T17:51:13,671 Removed build tracker: '/tmp/pip-build-tracker-bt64strz'