2024-03-04T06:48:16,648 Created temporary directory: /tmp/pip-build-tracker-3drax7sq 2024-03-04T06:48:16,652 Initialized build tracking at /tmp/pip-build-tracker-3drax7sq 2024-03-04T06:48:16,652 Created build tracker: /tmp/pip-build-tracker-3drax7sq 2024-03-04T06:48:16,653 Entered build tracker: /tmp/pip-build-tracker-3drax7sq 2024-03-04T06:48:16,654 Created temporary directory: /tmp/pip-wheel-sgk7xmph 2024-03-04T06:48:16,665 Created temporary directory: /tmp/pip-ephem-wheel-cache-3svcufyc 2024-03-04T06:48:16,724 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-04T06:48:16,738 2 location(s) to search for versions of uta-align: 2024-03-04T06:48:16,738 * https://pypi.org/simple/uta-align/ 2024-03-04T06:48:16,738 * https://www.piwheels.org/simple/uta-align/ 2024-03-04T06:48:16,739 Fetching project page and analyzing links: https://pypi.org/simple/uta-align/ 2024-03-04T06:48:16,740 Getting page https://pypi.org/simple/uta-align/ 2024-03-04T06:48:16,743 Found index url https://pypi.org/simple/ 2024-03-04T06:48:16,857 Fetched page https://pypi.org/simple/uta-align/ as application/vnd.pypi.simple.v1+json 2024-03-04T06:48:16,871 Found link https://files.pythonhosted.org/packages/60/a2/47df4fbbbf9800199f0b9363ba2b02c7f234d074ad2693d09cb499a18b2f/uta-align-0.0.1dev-c749ca8b22a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.0.1dev-c749ca8b22a0 2024-03-04T06:48:16,873 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/08/ed/16116fd416d69101c3cda7290be8a3a4f82f9d3c9e7902c783633ed78f21/uta_align-0.0.1dev_c749ca8b22a0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,873 Found link https://files.pythonhosted.org/packages/c5/c4/e4c65f29cdbcec6ec0269ae305bba6b2a228ff67699de315154dcda99f68/uta-align-0.1.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.0 2024-03-04T06:48:16,874 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/50/0cf3cc125b6ba7ad99012bedf436c15e56cdf19c677edd4d25f24c51cfe2/uta_align-0.1.0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,874 Found link https://files.pythonhosted.org/packages/f5/7f/c7c7d3043fa52fe7d6c8d3a870409f9cc9126ca11c113ca05bcd889a123d/uta-align-0.1.2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.2 2024-03-04T06:48:16,875 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/fe/38/a811e7ea2cfa3d1447302b1e0bf650a6b7394c85a308416ae9acbde5c0b9/uta_align-0.1.2-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,876 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/ef/d709856489d8883fa96dfa2732a7cdf33a2b6eb7319e2d8f245e1fbe299a/uta_align-0.1.4-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,876 Found link https://files.pythonhosted.org/packages/4f/98/6c282d715088d99d0e4ad4574bd7ae06ae0157f9b4c94843bf215a2b13fd/uta-align-0.1.5.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.5 2024-03-04T06:48:16,877 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d3/86/7a17a92e6730db93d570dde8d4f6ed2ebde235a4a2b1067fe41aa73e6d56/uta_align-0.1.5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,878 Found link https://files.pythonhosted.org/packages/20/a0/944d267127f1cc2b188f8afbc3684232ebd576ccad97cec399179f29ada3/uta-align-0.1.6.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.6 2024-03-04T06:48:16,878 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/79/ab5ccbbf4854c8dc038871306dccb76e18680581267e876528f829089b6a/uta_align-0.1.6-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,879 Found link https://files.pythonhosted.org/packages/42/c0/9999b551deffc63c27066cffdac0c2bdd6413d3741b775a6f0441ce82c94/uta-align-0.1.7.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.7 2024-03-04T06:48:16,879 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/fc/a620e23d04f03f60881831b48f4e05e3fbd8b8cd9c797b06245f7783d8b4/uta_align-0.1.7-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,880 Found link https://files.pythonhosted.org/packages/f1/f2/ae2c44e1009a4c94be0a228a17ba41327cbb14ca4d205b9d30a6d03907e0/uta-align-0.1.8.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.8 2024-03-04T06:48:16,881 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0a/e1/dfb0593828e024c1a8c1b40539a892d613a52221deec59e1916e6271c49d/uta_align-0.1.8-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,881 Found link https://files.pythonhosted.org/packages/53/9a/f8e1cab0dc5e7f59277cad128fcead3897c03c74c743b6ef05927a49914e/uta-align-0.1.9.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.9 2024-03-04T06:48:16,882 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/12/b6/bedbe1aa646f76d72de5a2e269b0771d04704ab97be399ebe34a7b4a31ac/uta_align-0.1.9-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,882 Found link https://files.pythonhosted.org/packages/94/6b/0b73dc6d3391468e9d5229a262129763672296d41f1a26d4f128c66a99dd/uta-align-0.1.10.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.10 2024-03-04T06:48:16,883 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/ec/2ec104fea2c5ad78e85b77df92d92a77c75fca18b9fd5efe75e970c4d6ed/uta_align-0.1.10-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,884 Found link https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.11 2024-03-04T06:48:16,884 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/dd/a7/46496d2d48416e55e45b4f7a77103d53a80f9165552d81ffba27e51ff99b/uta_align-0.1.11-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,885 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0f/7c/ffe50738dd367f7378193f892584392015f4b62aa3ebce7ff721b0cddbc4/uta_align-0.1.11-py3.6-linux-x86_64.egg (from https://pypi.org/simple/uta-align/) 2024-03-04T06:48:16,885 Found link https://files.pythonhosted.org/packages/0f/a2/e6bdd37d746c294c7a6374664078ecf2d34677b52c5267ff0576f669eb15/uta-align-0.2.0a1.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a1 2024-03-04T06:48:16,886 Found link https://files.pythonhosted.org/packages/7c/07/3d0483101728198e619f9d45552d2d50dc90fc2937964a899e6fe3908687/uta-align-0.2.0a2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a2 2024-03-04T06:48:16,887 Found link https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a3 2024-03-04T06:48:16,887 Found link https://files.pythonhosted.org/packages/64/bc/5306c731e7d4d304e9d1f7fee2a8fa1d79640626ccaac9f9df660078893c/uta-align-0.2.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0 2024-03-04T06:48:16,888 Found link https://files.pythonhosted.org/packages/95/c5/883aa80e54870d4646838c083bfc48f892f0b17999c6ae59f3dd364efa90/uta-align-0.3.0a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.3.0a0 2024-03-04T06:48:16,889 Fetching project page and analyzing links: https://www.piwheels.org/simple/uta-align/ 2024-03-04T06:48:16,890 Getting page https://www.piwheels.org/simple/uta-align/ 2024-03-04T06:48:16,892 Found index url https://www.piwheels.org/simple/ 2024-03-04T06:48:17,028 Fetched page https://www.piwheels.org/simple/uta-align/ as text/html 2024-03-04T06:48:17,049 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp311-cp311-linux_armv6l.whl#sha256=fc65db985e03837e737b03c0a36b910e0cec18b21b731f3a33e84a74149707db (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,050 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp311-cp311-linux_armv7l.whl#sha256=fc65db985e03837e737b03c0a36b910e0cec18b21b731f3a33e84a74149707db (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,051 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv6l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,051 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv7l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,052 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,052 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,053 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,053 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,054 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv6l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,054 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv7l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,055 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv6l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,055 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv7l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,056 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv6l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,057 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv7l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,057 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv7l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,058 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv6l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,058 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv6l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,059 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv7l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,059 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv6l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,060 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv7l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,060 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,061 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,061 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,061 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,062 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,063 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,063 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv6l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,063 Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv7l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/) 2024-03-04T06:48:17,064 Skipping link: not a file: https://www.piwheels.org/simple/uta-align/ 2024-03-04T06:48:17,065 Skipping link: not a file: https://pypi.org/simple/uta-align/ 2024-03-04T06:48:17,103 Given no hashes to check 1 links for project 'uta-align': discarding no candidates 2024-03-04T06:48:17,134 Collecting uta-align==0.3.0a0 2024-03-04T06:48:17,139 Created temporary directory: /tmp/pip-unpack-2tg13w4c 2024-03-04T06:48:17,239 Downloading uta-align-0.3.0a0.tar.gz (335 kB) 2024-03-04T06:48:17,813 Added uta-align==0.3.0a0 from https://files.pythonhosted.org/packages/95/c5/883aa80e54870d4646838c083bfc48f892f0b17999c6ae59f3dd364efa90/uta-align-0.3.0a0.tar.gz to build tracker '/tmp/pip-build-tracker-3drax7sq' 2024-03-04T06:48:17,835 Created temporary directory: /tmp/pip-build-env-pb13ctir 2024-03-04T06:48:17,858 Installing build dependencies: started 2024-03-04T06:48:17,860 Running command pip subprocess to install build dependencies 2024-03-04T06:48:20,706 Using pip 23.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2024-03-04T06:48:22,419 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-04T06:48:27,026 Collecting cython>=0.29 2024-03-04T06:48:27,105 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.8-cp37-cp37m-linux_armv7l.whl (4.4 MB) 2024-03-04T06:48:27,868 Collecting cython-setuptools 2024-03-04T06:48:27,893 Downloading 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https://www.piwheels.org/simple/zipp/zipp-3.16.1-py3-none-any.whl#sha256=8ba47289cfe5ead30d0cda58334ebb39b0e27609aaa680c24d2323927fd8696e (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8) 2024-03-04T06:48:57,184 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.0-py3-none-any.whl#sha256=1338e8df1aff24947954617867855699925e8e9e87e75e0853a68fe6cc2b646b (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8) 2024-03-04T06:48:57,349 Collecting zipp>=0.5 (from importlib-metadata->setuptools_scm) 2024-03-04T06:48:57,380 Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB) 2024-03-04T06:48:58,579 Collecting distlib<1,>=0.3.7 (from virtualenv>=20.24.1->tox) 2024-03-04T06:48:58,614 Using cached https://www.piwheels.org/simple/distlib/distlib-0.3.8-py2.py3-none-any.whl (468 kB) 2024-03-04T06:49:07,217 Installing collected packages: distlib, zipp, wheel, typing-extensions, tomli, setuptools, pysam, packaging, filelock, cython, colorama, chardet, cachetools, pyproject-api, platformdirs, importlib-metadata, virtualenv, setuptools_scm, pluggy, click, tox, cython-setuptools 2024-03-04T06:49:08,965 Creating /tmp/pip-build-env-pb13ctir/overlay/bin 2024-03-04T06:49:08,970 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/wheel to 755 2024-03-04T06:49:32,314 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/cygdb to 755 2024-03-04T06:49:32,320 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/cython to 755 2024-03-04T06:49:32,325 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/cythonize to 755 2024-03-04T06:49:34,927 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/chardetect to 755 2024-03-04T06:49:37,223 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/virtualenv to 755 2024-03-04T06:49:40,602 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/tox to 755 2024-03-04T06:49:40,924 changing mode of /tmp/pip-build-env-pb13ctir/overlay/bin/cython-setuptools to 755 2024-03-04T06:49:41,020 Successfully installed cachetools-5.3.3 chardet-5.2.0 click-8.1.7 colorama-0.4.6 cython-3.0.8 cython-setuptools-0.2.3 distlib-0.3.8 filelock-3.12.2 importlib-metadata-6.7.0 packaging-23.2 platformdirs-4.0.0 pluggy-1.2.0 pyproject-api-1.5.3 pysam-0.22.0 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 tox-4.8.0 typing-extensions-4.7.1 virtualenv-20.25.1 wheel-0.42.0 zipp-3.15.0 2024-03-04T06:49:41,487 WARNING: There was an error checking the latest version of pip. 2024-03-04T06:49:42,383 Installing build dependencies: finished with status 'done' 2024-03-04T06:49:42,398 Getting requirements to build wheel: started 2024-03-04T06:49:42,400 Running command Getting requirements to build wheel 2024-03-04T06:50:06,029 Compiling uta_align/align/algorithms.pyx because it depends on /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/Cython/Includes/posix/types.pxd. 2024-03-04T06:50:06,030 Compiling uta_align/align/cigar_utils.pyx because it depends on /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/Cython/Includes/posix/types.pxd. 2024-03-04T06:50:06,031 [1/2] Cythonizing uta_align/align/algorithms.pyx 2024-03-04T06:50:06,031 [2/2] Cythonizing uta_align/align/cigar_utils.pyx 2024-03-04T06:50:07,042 Getting requirements to build wheel: finished with status 'done' 2024-03-04T06:50:07,092 Created temporary directory: /tmp/pip-modern-metadata-e9a7ypjm 2024-03-04T06:50:07,099 Preparing metadata (pyproject.toml): started 2024-03-04T06:50:07,101 Running command Preparing metadata (pyproject.toml) 2024-03-04T06:50:16,562 running dist_info 2024-03-04T06:50:16,644 creating /tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info 2024-03-04T06:50:16,670 writing /tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/PKG-INFO 2024-03-04T06:50:16,681 writing dependency_links to /tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/dependency_links.txt 2024-03-04T06:50:16,687 writing requirements to /tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/requires.txt 2024-03-04T06:50:16,690 writing top-level names to /tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/top_level.txt 2024-03-04T06:50:16,694 writing manifest file '/tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/SOURCES.txt' 2024-03-04T06:50:16,963 listing git files failed - pretending there aren't any 2024-03-04T06:50:16,992 reading manifest file '/tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/SOURCES.txt' 2024-03-04T06:50:17,007 adding license file 'LICENSE.txt' 2024-03-04T06:50:17,014 writing manifest file '/tmp/pip-modern-metadata-e9a7ypjm/uta_align.egg-info/SOURCES.txt' 2024-03-04T06:50:17,017 creating '/tmp/pip-modern-metadata-e9a7ypjm/uta_align-0.3.0a0.dist-info' 2024-03-04T06:50:18,098 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-04T06:50:18,114 Source in /tmp/pip-wheel-sgk7xmph/uta-align_4342f87dc403410ea7483f10c9f41545 has version 0.3.0a0, which satisfies requirement uta-align==0.3.0a0 from https://files.pythonhosted.org/packages/95/c5/883aa80e54870d4646838c083bfc48f892f0b17999c6ae59f3dd364efa90/uta-align-0.3.0a0.tar.gz 2024-03-04T06:50:18,116 Removed uta-align==0.3.0a0 from https://files.pythonhosted.org/packages/95/c5/883aa80e54870d4646838c083bfc48f892f0b17999c6ae59f3dd364efa90/uta-align-0.3.0a0.tar.gz from build tracker '/tmp/pip-build-tracker-3drax7sq' 2024-03-04T06:50:18,127 Created temporary directory: /tmp/pip-unpack-6a_y79b2 2024-03-04T06:50:18,129 Created temporary directory: /tmp/pip-unpack-pwuf915d 2024-03-04T06:50:18,197 Building wheels for collected packages: uta-align 2024-03-04T06:50:18,211 Created temporary directory: /tmp/pip-wheel-sm1s72g_ 2024-03-04T06:50:18,212 Destination directory: /tmp/pip-wheel-sm1s72g_ 2024-03-04T06:50:18,221 Building wheel for uta-align (pyproject.toml): started 2024-03-04T06:50:18,223 Running command Building wheel for uta-align (pyproject.toml) 2024-03-04T06:50:24,039 running bdist_wheel 2024-03-04T06:50:24,201 running build 2024-03-04T06:50:24,202 running build_ext 2024-03-04T06:50:24,217 building 'uta_align.align.algorithms' extension 2024-03-04T06:50:24,218 creating build 2024-03-04T06:50:24,219 creating build/temp.linux-armv7l-cpython-37 2024-03-04T06:50:24,221 creating build/temp.linux-armv7l-cpython-37/uta_align 2024-03-04T06:50:24,222 creating build/temp.linux-armv7l-cpython-37/uta_align/align 2024-03-04T06:50:24,224 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -I/tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam -I/tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib -I/tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/samtools -I/usr/include/python3.7m -c uta_align/align/algorithms.c -o build/temp.linux-armv7l-cpython-37/uta_align/align/algorithms.o 2024-03-04T06:50:25,521 uta_align/align/algorithms.c: In function ‘__pyx_pf_9uta_align_5align_10algorithms_8needleman_wunsch_altshul_erikson’: 2024-03-04T06:50:25,526 uta_align/align/algorithms.c:15310:33: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-04T06:50:25,527 for (__pyx_t_5 = 1; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2024-03-04T06:50:25,527 ^ 2024-03-04T06:50:25,531 uta_align/align/algorithms.c:15347:28: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-04T06:50:25,532 __pyx_t_6 = (__pyx_v_j < __pyx_v_m); 2024-03-04T06:50:25,532 ^ 2024-03-04T06:50:25,537 uta_align/align/algorithms.c:15379:33: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-04T06:50:25,537 for (__pyx_t_5 = 1; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2024-03-04T06:50:25,537 ^ 2024-03-04T06:50:25,542 uta_align/align/algorithms.c:15462:28: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-04T06:50:25,542 __pyx_t_6 = (__pyx_v_i < __pyx_v_n); 2024-03-04T06:50:25,543 ^ 2024-03-04T06:50:25,547 uta_align/align/algorithms.c:15493:35: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-04T06:50:25,548 for (__pyx_t_7 = 1; __pyx_t_7 < __pyx_t_9; __pyx_t_7+=1) { 2024-03-04T06:50:25,548 ^ 2024-03-04T06:50:27,798 In file included from /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:4, 2024-03-04T06:50:27,799 from uta_align/align/algorithms.c:1264: 2024-03-04T06:50:27,799 At top level: 2024-03-04T06:50:27,801 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:190:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2024-03-04T06:50:27,801 SCOPE int kseq_read(kseq_t *seq) \ 2024-03-04T06:50:27,802 ^~~~~~~~~ 2024-03-04T06:50:27,802 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:244:2: note: in expansion of macro ‘__KSEQ_READ’ 2024-03-04T06:50:27,802 __KSEQ_READ(SCOPE) 2024-03-04T06:50:27,803 ^~~~~~~~~~~ 2024-03-04T06:50:27,803 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’ 2024-03-04T06:50:27,803 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2024-03-04T06:50:27,804 ^~~~~~~~~~ 2024-03-04T06:50:27,804 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2024-03-04T06:50:27,804 KSEQ_INIT(BGZF *, bgzf_read) 2024-03-04T06:50:27,804 ^~~~~~~~~ 2024-03-04T06:50:27,805 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:174:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2024-03-04T06:50:27,806 SCOPE void kseq_destroy(kseq_t *ks) \ 2024-03-04T06:50:27,806 ^~~~~~~~~~~~ 2024-03-04T06:50:27,806 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2024-03-04T06:50:27,807 __KSEQ_BASIC(SCOPE, type_t) \ 2024-03-04T06:50:27,807 ^~~~~~~~~~~~ 2024-03-04T06:50:27,807 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’ 2024-03-04T06:50:27,808 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2024-03-04T06:50:27,808 ^~~~~~~~~~ 2024-03-04T06:50:27,808 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2024-03-04T06:50:27,809 KSEQ_INIT(BGZF *, bgzf_read) 2024-03-04T06:50:27,809 ^~~~~~~~~ 2024-03-04T06:50:27,809 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:168:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2024-03-04T06:50:27,810 SCOPE kseq_t *kseq_init(type_t fd) \ 2024-03-04T06:50:27,810 ^~~~~~~~~ 2024-03-04T06:50:27,810 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2024-03-04T06:50:27,811 __KSEQ_BASIC(SCOPE, type_t) \ 2024-03-04T06:50:27,811 ^~~~~~~~~~~~ 2024-03-04T06:50:27,811 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’ 2024-03-04T06:50:27,812 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2024-03-04T06:50:27,812 ^~~~~~~~~~ 2024-03-04T06:50:27,812 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2024-03-04T06:50:27,813 KSEQ_INIT(BGZF *, bgzf_read) 2024-03-04T06:50:27,813 ^~~~~~~~~ 2024-03-04T06:51:14,176 creating build/lib.linux-armv7l-cpython-37 2024-03-04T06:51:14,177 creating build/lib.linux-armv7l-cpython-37/uta_align 2024-03-04T06:51:14,178 creating build/lib.linux-armv7l-cpython-37/uta_align/align 2024-03-04T06:51:14,180 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/uta_align/align/algorithms.o -L/usr/lib -o build/lib.linux-armv7l-cpython-37/uta_align/align/algorithms.cpython-37m-arm-linux-gnueabihf.so 2024-03-04T06:51:47,783 building 'uta_align.align.cigar_utils' extension 2024-03-04T06:51:47,784 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -I/tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam -I/tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib -I/tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/samtools -I/usr/include/python3.7m -c uta_align/align/cigar_utils.c -o build/temp.linux-armv7l-cpython-37/uta_align/align/cigar_utils.o 2024-03-04T06:51:51,043 In file included from /usr/include/python3.7m/Python.h:120, 2024-03-04T06:51:51,043 from uta_align/align/cigar_utils.c:47: 2024-03-04T06:51:51,043 uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence__extend_from_cigar_slice’: 2024-03-04T06:51:51,045 uta_align/align/cigar_utils.c:8829:37: warning: passing argument 1 of ‘PySlice_Unpack’ from incompatible pointer type [-Wincompatible-pointer-types] 2024-03-04T06:51:51,046 __pyx_t_1 = PySlice_GetIndicesEx(((PySliceObject *)__pyx_v_sliceobj), __pyx_v_other->cigar_len, (&__pyx_v_start), (&__pyx_v_stop), (&__pyx_v_step), (&__pyx_v_slicelen)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 222, __pyx_L1_error) 2024-03-04T06:51:51,046 /usr/include/python3.7m/sliceobject.h:49:21: note: in definition of macro ‘PySlice_GetIndicesEx’ 2024-03-04T06:51:51,047 PySlice_Unpack((slice), (start), (stop), (step)) < 0 ? \ 2024-03-04T06:51:51,047 ^~~~~ 2024-03-04T06:51:51,047 /usr/include/python3.7m/sliceobject.h:53:42: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘PySliceObject *’ {aka ‘struct *’} 2024-03-04T06:51:51,048 PyAPI_FUNC(int) PySlice_Unpack(PyObject *slice, 2024-03-04T06:51:51,048 ~~~~~~~~~~^~~~~ 2024-03-04T06:51:51,069 uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence__alloc_buf’: 2024-03-04T06:51:51,071 uta_align/align/cigar_utils.c:9760:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-04T06:51:51,071 __pyx_t_1 = (__pyx_v_self->cigar_buf_len < __pyx_v_n); 2024-03-04T06:51:51,072 ^ 2024-03-04T06:51:51,078 uta_align/align/cigar_utils.c: In function ‘__pyx_pf_9uta_align_5align_11cigar_utils_13CigarSequence_6__contains__’: 2024-03-04T06:51:51,081 uta_align/align/cigar_utils.c:10227:62: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-04T06:51:51,081 __pyx_t_6 = (((__pyx_v_self->cigar_buf[__pyx_v_i]) & 15) == __pyx_v_op); 2024-03-04T06:51:51,082 ^~ 2024-03-04T06:51:51,093 uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence_count’: 2024-03-04T06:51:51,095 uta_align/align/cigar_utils.c:10399:62: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-04T06:51:51,095 __pyx_t_9 = (((__pyx_v_self->cigar_buf[__pyx_v_i]) & 15) == __pyx_v_op); 2024-03-04T06:51:51,096 ^~ 2024-03-04T06:51:51,140 uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence_ref_len’: 2024-03-04T06:51:51,143 uta_align/align/cigar_utils.c:11121:48: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-04T06:51:51,143 __pyx_t_9 = ((__pyx_v_query + __pyx_v_n) >= __pyx_v_query_bases); 2024-03-04T06:51:51,144 ^~ 2024-03-04T06:51:51,166 uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence_query_len’: 2024-03-04T06:51:51,168 uta_align/align/cigar_utils.c:11614:47: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-04T06:51:51,169 __pyx_t_10 = ((__pyx_v_ref + __pyx_v_n) >= __pyx_v_ref_bases); 2024-03-04T06:51:51,169 ^~ 2024-03-04T06:51:51,401 uta_align/align/cigar_utils.c: In function ‘__pyx_pf_9uta_align_5align_11cigar_utils_13CigarSequence_38to_string’: 2024-03-04T06:51:51,404 uta_align/align/cigar_utils.c:14774:33: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2024-03-04T06:51:51,405 for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { 2024-03-04T06:51:51,405 ^ 2024-03-04T06:51:51,410 uta_align/align/cigar_utils.c:14823:33: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2024-03-04T06:51:51,410 for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { 2024-03-04T06:51:51,411 ^ 2024-03-04T06:51:54,063 In file included from /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:4, 2024-03-04T06:51:54,063 from uta_align/align/cigar_utils.c:1263: 2024-03-04T06:51:54,063 At top level: 2024-03-04T06:51:54,278 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:190:12: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2024-03-04T06:51:54,278 SCOPE int kseq_read(kseq_t *seq) \ 2024-03-04T06:51:54,279 ^~~~~~~~~ 2024-03-04T06:51:54,279 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:244:2: note: in expansion of macro ‘__KSEQ_READ’ 2024-03-04T06:51:54,279 __KSEQ_READ(SCOPE) 2024-03-04T06:51:54,280 ^~~~~~~~~~~ 2024-03-04T06:51:54,280 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’ 2024-03-04T06:51:54,280 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2024-03-04T06:51:54,281 ^~~~~~~~~~ 2024-03-04T06:51:54,281 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2024-03-04T06:51:54,281 KSEQ_INIT(BGZF *, bgzf_read) 2024-03-04T06:51:54,282 ^~~~~~~~~ 2024-03-04T06:51:54,282 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:174:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2024-03-04T06:51:54,282 SCOPE void kseq_destroy(kseq_t *ks) \ 2024-03-04T06:51:54,283 ^~~~~~~~~~~~ 2024-03-04T06:51:54,283 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2024-03-04T06:51:54,283 __KSEQ_BASIC(SCOPE, type_t) \ 2024-03-04T06:51:54,284 ^~~~~~~~~~~~ 2024-03-04T06:51:54,284 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’ 2024-03-04T06:51:54,284 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2024-03-04T06:51:54,285 ^~~~~~~~~~ 2024-03-04T06:51:54,285 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2024-03-04T06:51:54,285 KSEQ_INIT(BGZF *, bgzf_read) 2024-03-04T06:51:54,285 ^~~~~~~~~ 2024-03-04T06:51:54,286 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:168:16: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2024-03-04T06:51:54,286 SCOPE kseq_t *kseq_init(type_t fd) \ 2024-03-04T06:51:54,286 ^~~~~~~~~ 2024-03-04T06:51:54,287 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’ 2024-03-04T06:51:54,287 __KSEQ_BASIC(SCOPE, type_t) \ 2024-03-04T06:51:54,287 ^~~~~~~~~~~~ 2024-03-04T06:51:54,288 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’ 2024-03-04T06:51:54,288 #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2024-03-04T06:51:54,288 ^~~~~~~~~~ 2024-03-04T06:51:54,289 /tmp/pip-build-env-pb13ctir/overlay/lib/python3.7/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2024-03-04T06:51:54,289 KSEQ_INIT(BGZF *, bgzf_read) 2024-03-04T06:51:54,289 ^~~~~~~~~ 2024-03-04T06:52:38,641 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/uta_align/align/cigar_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-37/uta_align/align/cigar_utils.cpython-37m-arm-linux-gnueabihf.so 2024-03-04T06:53:15,332 installing to build/bdist.linux-armv7l/wheel 2024-03-04T06:53:15,332 running install 2024-03-04T06:53:15,393 running install_lib 2024-03-04T06:53:15,424 creating build/bdist.linux-armv7l 2024-03-04T06:53:15,425 creating build/bdist.linux-armv7l/wheel 2024-03-04T06:53:15,429 creating build/bdist.linux-armv7l/wheel/uta_align 2024-03-04T06:53:15,434 creating build/bdist.linux-armv7l/wheel/uta_align/align 2024-03-04T06:53:15,437 copying build/lib.linux-armv7l-cpython-37/uta_align/align/algorithms.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uta_align/align 2024-03-04T06:53:15,491 copying build/lib.linux-armv7l-cpython-37/uta_align/align/cigar_utils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uta_align/align 2024-03-04T06:53:15,523 running install_egg_info 2024-03-04T06:53:15,564 running egg_info 2024-03-04T06:53:15,588 writing uta_align.egg-info/PKG-INFO 2024-03-04T06:53:15,592 writing dependency_links to uta_align.egg-info/dependency_links.txt 2024-03-04T06:53:15,597 writing requirements to uta_align.egg-info/requires.txt 2024-03-04T06:53:15,599 writing top-level names to uta_align.egg-info/top_level.txt 2024-03-04T06:53:15,718 listing git files failed - pretending there aren't any 2024-03-04T06:53:15,746 reading manifest file 'uta_align.egg-info/SOURCES.txt' 2024-03-04T06:53:15,760 adding license file 'LICENSE.txt' 2024-03-04T06:53:15,769 writing manifest file 'uta_align.egg-info/SOURCES.txt' 2024-03-04T06:53:15,773 Copying uta_align.egg-info to build/bdist.linux-armv7l/wheel/uta_align-0.3.0a0-py3.7.egg-info 2024-03-04T06:53:15,794 running install_scripts 2024-03-04T06:53:15,890 creating build/bdist.linux-armv7l/wheel/uta_align-0.3.0a0.dist-info/WHEEL 2024-03-04T06:53:15,897 creating '/tmp/pip-wheel-sm1s72g_/.tmp-a3v8dvbu/uta_align-0.3.0a0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-04T06:53:16,047 adding 'uta_align/align/algorithms.cpython-37m-arm-linux-gnueabihf.so' 2024-03-04T06:53:16,215 adding 'uta_align/align/cigar_utils.cpython-37m-arm-linux-gnueabihf.so' 2024-03-04T06:53:16,230 adding 'uta_align-0.3.0a0.dist-info/LICENSE.txt' 2024-03-04T06:53:16,233 adding 'uta_align-0.3.0a0.dist-info/METADATA' 2024-03-04T06:53:16,235 adding 'uta_align-0.3.0a0.dist-info/WHEEL' 2024-03-04T06:53:16,237 adding 'uta_align-0.3.0a0.dist-info/top_level.txt' 2024-03-04T06:53:16,239 adding 'uta_align-0.3.0a0.dist-info/RECORD' 2024-03-04T06:53:16,252 removing build/bdist.linux-armv7l/wheel 2024-03-04T06:53:16,514 Building wheel for uta-align (pyproject.toml): finished with status 'done' 2024-03-04T06:53:16,542 Created wheel for uta-align: filename=uta_align-0.3.0a0-cp37-cp37m-linux_armv7l.whl size=268177 sha256=364a1ba4e603e17e767fccc392bfb7aef78095000a7b7ab28227147010441d34 2024-03-04T06:53:16,544 Stored in directory: /tmp/pip-ephem-wheel-cache-3svcufyc/wheels/a9/95/0d/8709f2c1a7ea6b671371480e4c3ed4e97c5de37d1be23c85db 2024-03-04T06:53:16,573 Successfully built uta-align 2024-03-04T06:53:16,603 Removed build tracker: '/tmp/pip-build-tracker-3drax7sq'