2024-03-04T22:57:50,022 Created temporary directory: /tmp/pip-build-tracker-gijbfo43
2024-03-04T22:57:50,023 Initialized build tracking at /tmp/pip-build-tracker-gijbfo43
2024-03-04T22:57:50,024 Created build tracker: /tmp/pip-build-tracker-gijbfo43
2024-03-04T22:57:50,024 Entered build tracker: /tmp/pip-build-tracker-gijbfo43
2024-03-04T22:57:50,025 Created temporary directory: /tmp/pip-wheel-bim3ubv_
2024-03-04T22:57:50,028 Created temporary directory: /tmp/pip-ephem-wheel-cache-1o2vfq7p
2024-03-04T22:57:50,050 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-04T22:57:50,054 2 location(s) to search for versions of uta-align:
2024-03-04T22:57:50,054 * https://pypi.org/simple/uta-align/
2024-03-04T22:57:50,054 * https://www.piwheels.org/simple/uta-align/
2024-03-04T22:57:50,054 Fetching project page and analyzing links: https://pypi.org/simple/uta-align/
2024-03-04T22:57:50,055 Getting page https://pypi.org/simple/uta-align/
2024-03-04T22:57:50,057 Found index url https://pypi.org/simple/
2024-03-04T22:57:50,275 Fetched page https://pypi.org/simple/uta-align/ as application/vnd.pypi.simple.v1+json
2024-03-04T22:57:50,281   Found link https://files.pythonhosted.org/packages/60/a2/47df4fbbbf9800199f0b9363ba2b02c7f234d074ad2693d09cb499a18b2f/uta-align-0.0.1dev-c749ca8b22a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.0.1dev-c749ca8b22a0
2024-03-04T22:57:50,281   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/08/ed/16116fd416d69101c3cda7290be8a3a4f82f9d3c9e7902c783633ed78f21/uta_align-0.0.1dev_c749ca8b22a0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,282   Found link https://files.pythonhosted.org/packages/c5/c4/e4c65f29cdbcec6ec0269ae305bba6b2a228ff67699de315154dcda99f68/uta-align-0.1.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.0
2024-03-04T22:57:50,283   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/50/0cf3cc125b6ba7ad99012bedf436c15e56cdf19c677edd4d25f24c51cfe2/uta_align-0.1.0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,283   Found link https://files.pythonhosted.org/packages/f5/7f/c7c7d3043fa52fe7d6c8d3a870409f9cc9126ca11c113ca05bcd889a123d/uta-align-0.1.2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.2
2024-03-04T22:57:50,284   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/fe/38/a811e7ea2cfa3d1447302b1e0bf650a6b7394c85a308416ae9acbde5c0b9/uta_align-0.1.2-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,285   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/ef/d709856489d8883fa96dfa2732a7cdf33a2b6eb7319e2d8f245e1fbe299a/uta_align-0.1.4-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,286   Found link https://files.pythonhosted.org/packages/4f/98/6c282d715088d99d0e4ad4574bd7ae06ae0157f9b4c94843bf215a2b13fd/uta-align-0.1.5.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.5
2024-03-04T22:57:50,286   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d3/86/7a17a92e6730db93d570dde8d4f6ed2ebde235a4a2b1067fe41aa73e6d56/uta_align-0.1.5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,287   Found link https://files.pythonhosted.org/packages/20/a0/944d267127f1cc2b188f8afbc3684232ebd576ccad97cec399179f29ada3/uta-align-0.1.6.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.6
2024-03-04T22:57:50,288   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/79/ab5ccbbf4854c8dc038871306dccb76e18680581267e876528f829089b6a/uta_align-0.1.6-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,288   Found link https://files.pythonhosted.org/packages/42/c0/9999b551deffc63c27066cffdac0c2bdd6413d3741b775a6f0441ce82c94/uta-align-0.1.7.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.7
2024-03-04T22:57:50,289   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/fc/a620e23d04f03f60881831b48f4e05e3fbd8b8cd9c797b06245f7783d8b4/uta_align-0.1.7-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,290   Found link https://files.pythonhosted.org/packages/f1/f2/ae2c44e1009a4c94be0a228a17ba41327cbb14ca4d205b9d30a6d03907e0/uta-align-0.1.8.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.8
2024-03-04T22:57:50,291   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0a/e1/dfb0593828e024c1a8c1b40539a892d613a52221deec59e1916e6271c49d/uta_align-0.1.8-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,291   Found link https://files.pythonhosted.org/packages/53/9a/f8e1cab0dc5e7f59277cad128fcead3897c03c74c743b6ef05927a49914e/uta-align-0.1.9.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.9
2024-03-04T22:57:50,292   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/12/b6/bedbe1aa646f76d72de5a2e269b0771d04704ab97be399ebe34a7b4a31ac/uta_align-0.1.9-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,293   Found link https://files.pythonhosted.org/packages/94/6b/0b73dc6d3391468e9d5229a262129763672296d41f1a26d4f128c66a99dd/uta-align-0.1.10.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.10
2024-03-04T22:57:50,293   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/ec/2ec104fea2c5ad78e85b77df92d92a77c75fca18b9fd5efe75e970c4d6ed/uta_align-0.1.10-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,294   Found link https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.11
2024-03-04T22:57:50,294   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/dd/a7/46496d2d48416e55e45b4f7a77103d53a80f9165552d81ffba27e51ff99b/uta_align-0.1.11-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,295   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0f/7c/ffe50738dd367f7378193f892584392015f4b62aa3ebce7ff721b0cddbc4/uta_align-0.1.11-py3.6-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-04T22:57:50,295   Found link https://files.pythonhosted.org/packages/0f/a2/e6bdd37d746c294c7a6374664078ecf2d34677b52c5267ff0576f669eb15/uta-align-0.2.0a1.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a1
2024-03-04T22:57:50,296   Found link https://files.pythonhosted.org/packages/7c/07/3d0483101728198e619f9d45552d2d50dc90fc2937964a899e6fe3908687/uta-align-0.2.0a2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a2
2024-03-04T22:57:50,297   Found link https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a3
2024-03-04T22:57:50,298   Found link https://files.pythonhosted.org/packages/64/bc/5306c731e7d4d304e9d1f7fee2a8fa1d79640626ccaac9f9df660078893c/uta-align-0.2.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0
2024-03-04T22:57:50,298   Found link https://files.pythonhosted.org/packages/95/c5/883aa80e54870d4646838c083bfc48f892f0b17999c6ae59f3dd364efa90/uta-align-0.3.0a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.3.0a0
2024-03-04T22:57:50,299   Found link https://files.pythonhosted.org/packages/4c/eb/12819f9693b0577aca06c70648619a0a5b10bffa368c64c226471cdb1bd8/uta-align-0.3.0a4.tar.gz (from https://pypi.org/simple/uta-align/) (requires-python:>=3.9), version: 0.3.0a4
2024-03-04T22:57:50,300 Fetching project page and analyzing links: https://www.piwheels.org/simple/uta-align/
2024-03-04T22:57:50,301 Getting page https://www.piwheels.org/simple/uta-align/
2024-03-04T22:57:50,302 Found index url https://www.piwheels.org/simple/
2024-03-04T22:57:50,652 Fetched page https://www.piwheels.org/simple/uta-align/ as text/html
2024-03-04T22:57:50,662   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp311-cp311-linux_armv6l.whl#sha256=fc65db985e03837e737b03c0a36b910e0cec18b21b731f3a33e84a74149707db (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,662   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp311-cp311-linux_armv7l.whl#sha256=fc65db985e03837e737b03c0a36b910e0cec18b21b731f3a33e84a74149707db (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,663   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp37-cp37m-linux_armv6l.whl#sha256=364a1ba4e603e17e767fccc392bfb7aef78095000a7b7ab28227147010441d34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,663   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp37-cp37m-linux_armv7l.whl#sha256=364a1ba4e603e17e767fccc392bfb7aef78095000a7b7ab28227147010441d34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,664   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp39-cp39-linux_armv6l.whl#sha256=ea88b398d93f9315873ae8e5829936a4ea7757178fe88808b4994bd4f0a84082 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,664   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp39-cp39-linux_armv7l.whl#sha256=ea88b398d93f9315873ae8e5829936a4ea7757178fe88808b4994bd4f0a84082 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,665   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv6l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,665   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv7l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,666   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,666   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,667   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,668   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,668   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv6l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,669   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv7l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,670   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv6l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,671   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv7l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,671   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv6l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,672   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv7l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,672   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv7l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,673   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv6l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,673   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv6l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,674   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv7l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,674   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv6l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,675   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv7l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,676   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,676   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,677   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,678   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,679   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,680   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,680   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv6l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,681   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv7l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2024-03-04T22:57:50,682 Skipping link: not a file: https://www.piwheels.org/simple/uta-align/
2024-03-04T22:57:50,682 Skipping link: not a file: https://pypi.org/simple/uta-align/
2024-03-04T22:57:50,703 Given no hashes to check 1 links for project 'uta-align': discarding no candidates
2024-03-04T22:57:50,721 Collecting uta-align==0.3.0a4
2024-03-04T22:57:50,724   Created temporary directory: /tmp/pip-unpack-i_ba1anp
2024-03-04T22:57:50,941   Downloading uta-align-0.3.0a4.tar.gz (338 kB)
2024-03-04T22:57:51,232   Added uta-align==0.3.0a4 from https://files.pythonhosted.org/packages/4c/eb/12819f9693b0577aca06c70648619a0a5b10bffa368c64c226471cdb1bd8/uta-align-0.3.0a4.tar.gz to build tracker '/tmp/pip-build-tracker-gijbfo43'
2024-03-04T22:57:51,242   Created temporary directory: /tmp/pip-build-env-q92ilnna
2024-03-04T22:57:51,246   Installing build dependencies: started
2024-03-04T22:57:51,248   Running command pip subprocess to install build dependencies
2024-03-04T22:57:52,392   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-04T22:57:52,925   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-04T22:57:53,760   Collecting wheel
2024-03-04T22:57:54,837     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-03-04T22:57:56,747   Collecting Cython~=3.0
2024-03-04T22:57:56,920     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.8-cp311-cp311-linux_armv7l.whl (11.7 MB)
2024-03-04T22:57:57,621   Collecting pysam~=0.22
2024-03-04T22:57:57,635     Downloading https://www.piwheels.org/simple/pysam/pysam-0.22.0-cp311-cp311-linux_armv7l.whl (17.8 MB)
2024-03-04T22:58:08,083        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.8/17.8 MB 3.1 MB/s eta 0:00:00
2024-03-04T22:58:09,902   Collecting setuptools~=69.0
2024-03-04T22:58:11,256     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-03-04T22:58:11,613   Collecting setuptools_scm~=8.0
2024-03-04T22:58:13,390     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
2024-03-04T22:58:13,852   Collecting packaging>=20 (from setuptools_scm~=8.0)
2024-03-04T22:58:14,715     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-03-04T22:58:14,831   Collecting typing-extensions (from setuptools_scm~=8.0)
2024-03-04T22:58:14,847     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.10.0-py3-none-any.whl (33 kB)
2024-03-04T22:58:17,380   Installing collected packages: wheel, typing-extensions, setuptools, pysam, packaging, Cython, setuptools_scm
2024-03-04T22:58:17,610     Creating /tmp/pip-build-env-q92ilnna/overlay/local/bin
2024-03-04T22:58:17,613     changing mode of /tmp/pip-build-env-q92ilnna/overlay/local/bin/wheel to 755
2024-03-04T22:58:29,973     changing mode of /tmp/pip-build-env-q92ilnna/overlay/local/bin/cygdb to 755
2024-03-04T22:58:29,975     changing mode of /tmp/pip-build-env-q92ilnna/overlay/local/bin/cython to 755
2024-03-04T22:58:29,977     changing mode of /tmp/pip-build-env-q92ilnna/overlay/local/bin/cythonize to 755
2024-03-04T22:58:30,237   Successfully installed Cython-3.0.8 packaging-23.2 pysam-0.22.0 setuptools-69.1.1 setuptools_scm-8.0.4 typing-extensions-4.10.0 wheel-0.42.0

2024-03-04T22:58:30,538   [notice] A new release of pip is available: 23.3.1 -> 24.0
2024-03-04T22:58:30,538   [notice] To update, run: python3 -m pip install --upgrade pip
2024-03-04T22:58:30,957   Installing build dependencies: finished with status 'done'
2024-03-04T22:58:30,961   Getting requirements to build wheel: started
2024-03-04T22:58:30,962   Running command Getting requirements to build wheel
2024-03-04T22:58:36,888   Compiling uta_align/algorithms.pyx because it depends on /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd.
2024-03-04T22:58:36,888   [1/1] Cythonizing uta_align/algorithms.pyx
2024-03-04T22:58:37,302   running egg_info
2024-03-04T22:58:37,309   writing uta_align.egg-info/PKG-INFO
2024-03-04T22:58:37,319   writing dependency_links to uta_align.egg-info/dependency_links.txt
2024-03-04T22:58:37,324   writing requirements to uta_align.egg-info/requires.txt
2024-03-04T22:58:37,325   writing top-level names to uta_align.egg-info/top_level.txt
2024-03-04T22:58:37,347   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,347   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,348   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,348   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,349   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,350   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,350   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,351   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,351   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,352   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,353   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,353   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:37,381   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-03-04T22:58:37,385   reading manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:37,389   adding license file 'LICENSE.txt'
2024-03-04T22:58:37,391   writing manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:37,883   Getting requirements to build wheel: finished with status 'done'
2024-03-04T22:58:37,892   Created temporary directory: /tmp/pip-modern-metadata-uyj4fo2g
2024-03-04T22:58:37,895   Preparing metadata (pyproject.toml): started
2024-03-04T22:58:37,896   Running command Preparing metadata (pyproject.toml)
2024-03-04T22:58:40,114   running dist_info
2024-03-04T22:58:40,120   creating /tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info
2024-03-04T22:58:40,126   writing /tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/PKG-INFO
2024-03-04T22:58:40,136   writing dependency_links to /tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/dependency_links.txt
2024-03-04T22:58:40,141   writing requirements to /tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/requires.txt
2024-03-04T22:58:40,142   writing top-level names to /tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/top_level.txt
2024-03-04T22:58:40,143   writing manifest file '/tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:40,162   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,163   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,163   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,164   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,164   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,165   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,166   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,166   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,167   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,167   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,168   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,168   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:40,190   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-03-04T22:58:40,193   reading manifest file '/tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:40,195   adding license file 'LICENSE.txt'
2024-03-04T22:58:40,197   writing manifest file '/tmp/pip-modern-metadata-uyj4fo2g/uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:40,198   creating '/tmp/pip-modern-metadata-uyj4fo2g/uta_align-0.3.0a4.dist-info'
2024-03-04T22:58:40,415   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-04T22:58:40,422   Source in /tmp/pip-wheel-bim3ubv_/uta-align_63870e354b0c4be58f22f73e21c310f3 has version 0.3.0a4, which satisfies requirement uta-align==0.3.0a4 from https://files.pythonhosted.org/packages/4c/eb/12819f9693b0577aca06c70648619a0a5b10bffa368c64c226471cdb1bd8/uta-align-0.3.0a4.tar.gz
2024-03-04T22:58:40,423   Removed uta-align==0.3.0a4 from https://files.pythonhosted.org/packages/4c/eb/12819f9693b0577aca06c70648619a0a5b10bffa368c64c226471cdb1bd8/uta-align-0.3.0a4.tar.gz from build tracker '/tmp/pip-build-tracker-gijbfo43'
2024-03-04T22:58:40,433 Created temporary directory: /tmp/pip-unpack-1mfd4pnt
2024-03-04T22:58:40,434 Created temporary directory: /tmp/pip-unpack-rsw33p91
2024-03-04T22:58:40,486 Building wheels for collected packages: uta-align
2024-03-04T22:58:40,490   Created temporary directory: /tmp/pip-wheel-2nmow4c1
2024-03-04T22:58:40,491   Destination directory: /tmp/pip-wheel-2nmow4c1
2024-03-04T22:58:40,493   Building wheel for uta-align (pyproject.toml): started
2024-03-04T22:58:40,494   Running command Building wheel for uta-align (pyproject.toml)
2024-03-04T22:58:42,636   running bdist_wheel
2024-03-04T22:58:42,662   running build
2024-03-04T22:58:42,663   running build_py
2024-03-04T22:58:42,669   creating build
2024-03-04T22:58:42,670   creating build/lib.linux-armv7l-cpython-311
2024-03-04T22:58:42,670   creating build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,671   copying uta_align/__init__.py -> build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,673   running egg_info
2024-03-04T22:58:42,678   writing uta_align.egg-info/PKG-INFO
2024-03-04T22:58:42,687   writing dependency_links to uta_align.egg-info/dependency_links.txt
2024-03-04T22:58:42,692   writing requirements to uta_align.egg-info/requires.txt
2024-03-04T22:58:42,692   writing top-level names to uta_align.egg-info/top_level.txt
2024-03-04T22:58:42,697   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,698   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,699   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,699   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,700   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,700   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,701   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,701   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,702   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,703   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,703   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,704   dependency /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-04T22:58:42,723   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-03-04T22:58:42,725   reading manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:42,728   adding license file 'LICENSE.txt'
2024-03-04T22:58:42,730   writing manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-04T22:58:42,733   copying uta_align/algorithms.c -> build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,771   copying uta_align/algorithms.pyx -> build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,775   copying uta_align/cigar_utils.c -> build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,809   copying uta_align/cigar_utils.pxd -> build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,813   copying uta_align/cigar_utils.pyx -> build/lib.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,818   running build_ext
2024-03-04T22:58:42,825   building 'uta_align' extension
2024-03-04T22:58:42,826   creating build/temp.linux-armv7l-cpython-311
2024-03-04T22:58:42,827   creating build/temp.linux-armv7l-cpython-311/uta_align
2024-03-04T22:58:42,828   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam -I/tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib -I/tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/samtools -I/usr/include/python3.11 -c uta_align/algorithms.c -o build/temp.linux-armv7l-cpython-311/uta_align/algorithms.o
2024-03-04T22:58:43,580   uta_align/algorithms.c: In function ‘__pyx_pf_9uta_align_8needleman_wunsch_altshul_erikson’:
2024-03-04T22:58:43,593   uta_align/algorithms.c:15321:33: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-04T22:58:43,594   15321 |   for (__pyx_t_5 = 1; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-03-04T22:58:43,595         |                                 ^
2024-03-04T22:58:43,607   uta_align/algorithms.c:15358:28: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-04T22:58:43,607   15358 |     __pyx_t_6 = (__pyx_v_j < __pyx_v_m);
2024-03-04T22:58:43,608         |                            ^
2024-03-04T22:58:43,620   uta_align/algorithms.c:15390:33: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-04T22:58:43,621   15390 |   for (__pyx_t_5 = 1; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-03-04T22:58:43,621         |                                 ^
2024-03-04T22:58:43,634   uta_align/algorithms.c:15473:28: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-04T22:58:43,635   15473 |     __pyx_t_6 = (__pyx_v_i < __pyx_v_n);
2024-03-04T22:58:43,635         |                            ^
2024-03-04T22:58:43,647   uta_align/algorithms.c:15504:35: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-04T22:58:43,648   15504 |     for (__pyx_t_7 = 1; __pyx_t_7 < __pyx_t_9; __pyx_t_7+=1) {
2024-03-04T22:58:43,649         |                                   ^
2024-03-04T22:58:45,142   In file included from /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h:4,
2024-03-04T22:58:45,142                    from uta_align/algorithms.c:1264:
2024-03-04T22:58:45,143   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h: At top level:
2024-03-04T22:58:45,143   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:190:19: warning: ‘kseq_read’ defined but not used [-Wunused-function]
2024-03-04T22:58:45,144     190 |         SCOPE int kseq_read(kseq_t *seq) \
2024-03-04T22:58:45,145         |                   ^~~~~~~~~
2024-03-04T22:58:45,145   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:244:9: note: in expansion of macro ‘__KSEQ_READ’
2024-03-04T22:58:45,146     244 |         __KSEQ_READ(SCOPE)
2024-03-04T22:58:45,146         |         ^~~~~~~~~~~
2024-03-04T22:58:45,147   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-04T22:58:45,147     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-04T22:58:45,148         |                                   ^~~~~~~~~~
2024-03-04T22:58:45,149   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-04T22:58:45,149       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-04T22:58:45,150         | ^~~~~~~~~
2024-03-04T22:58:45,151   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:174:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
2024-03-04T22:58:45,151     174 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
2024-03-04T22:58:45,152         |                    ^~~~~~~~~~~~
2024-03-04T22:58:45,153   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:243:9: note: in expansion of macro ‘__KSEQ_BASIC’
2024-03-04T22:58:45,153     243 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
2024-03-04T22:58:45,154         |         ^~~~~~~~~~~~
2024-03-04T22:58:45,155   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-04T22:58:45,156     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-04T22:58:45,157         |                                   ^~~~~~~~~~
2024-03-04T22:58:45,158   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-04T22:58:45,159       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-04T22:58:45,160         | ^~~~~~~~~
2024-03-04T22:58:45,160   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:168:23: warning: ‘kseq_init’ defined but not used [-Wunused-function]
2024-03-04T22:58:45,161     168 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
2024-03-04T22:58:45,162         |                       ^~~~~~~~~
2024-03-04T22:58:45,162   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:243:9: note: in expansion of macro ‘__KSEQ_BASIC’
2024-03-04T22:58:45,163     243 |         __KSEQ_BASIC(SCOPE, type_t)                                     \
2024-03-04T22:58:45,164         |         ^~~~~~~~~~~~
2024-03-04T22:58:45,164   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-04T22:58:45,165     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-04T22:58:45,165         |                                   ^~~~~~~~~~
2024-03-04T22:58:45,166   /tmp/pip-build-env-q92ilnna/overlay/local/lib/python3.11/dist-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-04T22:58:45,166       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-04T22:58:45,167         | ^~~~~~~~~
2024-03-04T22:59:06,538   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/uta_align/algorithms.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/uta_align.cpython-311-arm-linux-gnueabihf.so
2024-03-04T22:59:06,687   installing to build/bdist.linux-armv7l/wheel
2024-03-04T22:59:06,688   running install
2024-03-04T22:59:06,713   running install_lib
2024-03-04T22:59:06,719   creating build/bdist.linux-armv7l
2024-03-04T22:59:06,720   creating build/bdist.linux-armv7l/wheel
2024-03-04T22:59:06,721   copying build/lib.linux-armv7l-cpython-311/uta_align.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2024-03-04T22:59:06,748   creating build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,749   copying build/lib.linux-armv7l-cpython-311/uta_align/cigar_utils.pxd -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,752   copying build/lib.linux-armv7l-cpython-311/uta_align/algorithms.c -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,780   copying build/lib.linux-armv7l-cpython-311/uta_align/cigar_utils.pyx -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,783   copying build/lib.linux-armv7l-cpython-311/uta_align/algorithms.pyx -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,787   copying build/lib.linux-armv7l-cpython-311/uta_align/__init__.py -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,789   copying build/lib.linux-armv7l-cpython-311/uta_align/cigar_utils.c -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-04T22:59:06,815   running install_egg_info
2024-03-04T22:59:06,821   Copying uta_align.egg-info to build/bdist.linux-armv7l/wheel/uta_align-0.3.0a4-py3.11.egg-info
2024-03-04T22:59:06,833   running install_scripts
2024-03-04T22:59:06,885   creating build/bdist.linux-armv7l/wheel/uta_align-0.3.0a4.dist-info/WHEEL
2024-03-04T22:59:06,888   creating '/tmp/pip-wheel-2nmow4c1/.tmp-_nv2o99s/uta_align-0.3.0a4-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-04T22:59:07,059   adding 'uta_align.cpython-311-arm-linux-gnueabihf.so'
2024-03-04T22:59:07,067   adding 'uta_align/__init__.py'
2024-03-04T22:59:07,142   adding 'uta_align/algorithms.c'
2024-03-04T22:59:07,154   adding 'uta_align/algorithms.pyx'
2024-03-04T22:59:07,228   adding 'uta_align/cigar_utils.c'
2024-03-04T22:59:07,236   adding 'uta_align/cigar_utils.pxd'
2024-03-04T22:59:07,240   adding 'uta_align/cigar_utils.pyx'
2024-03-04T22:59:07,244   adding 'uta_align-0.3.0a4.dist-info/LICENSE.txt'
2024-03-04T22:59:07,247   adding 'uta_align-0.3.0a4.dist-info/METADATA'
2024-03-04T22:59:07,248   adding 'uta_align-0.3.0a4.dist-info/WHEEL'
2024-03-04T22:59:07,249   adding 'uta_align-0.3.0a4.dist-info/top_level.txt'
2024-03-04T22:59:07,251   adding 'uta_align-0.3.0a4.dist-info/RECORD'
2024-03-04T22:59:07,268   removing build/bdist.linux-armv7l/wheel
2024-03-04T22:59:07,461   Building wheel for uta-align (pyproject.toml): finished with status 'done'
2024-03-04T22:59:07,485   Created wheel for uta-align: filename=uta_align-0.3.0a4-cp311-cp311-linux_armv7l.whl size=641728 sha256=55c053bcb3639f53ac55f28761fc6676766b52e9db33a83d9fdf891e0513cfc3
2024-03-04T22:59:07,487   Stored in directory: /tmp/pip-ephem-wheel-cache-1o2vfq7p/wheels/64/30/d7/c8192cd3d203394b01b6ea47815bd088e2cbf0fe1105822977
2024-03-04T22:59:07,505 Successfully built uta-align
2024-03-04T22:59:07,538 Removed build tracker: '/tmp/pip-build-tracker-gijbfo43'