2024-03-07T21:21:23,464 Created temporary directory: /tmp/pip-build-tracker-rzuoveo2
2024-03-07T21:21:23,465 Initialized build tracking at /tmp/pip-build-tracker-rzuoveo2
2024-03-07T21:21:23,466 Created build tracker: /tmp/pip-build-tracker-rzuoveo2
2024-03-07T21:21:23,466 Entered build tracker: /tmp/pip-build-tracker-rzuoveo2
2024-03-07T21:21:23,467 Created temporary directory: /tmp/pip-wheel-dl6iz23h
2024-03-07T21:21:23,470 Created temporary directory: /tmp/pip-ephem-wheel-cache-3r9koqhd
2024-03-07T21:21:23,497 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-07T21:21:23,500 2 location(s) to search for versions of pub-worm:
2024-03-07T21:21:23,500 * https://pypi.org/simple/pub-worm/
2024-03-07T21:21:23,500 * https://www.piwheels.org/simple/pub-worm/
2024-03-07T21:21:23,501 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-03-07T21:21:23,502 Getting page https://pypi.org/simple/pub-worm/
2024-03-07T21:21:23,503 Found index url https://pypi.org/simple/
2024-03-07T21:21:23,721 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-03-07T21:21:23,724   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-03-07T21:21:23,724   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-03-07T21:21:23,725   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-03-07T21:21:23,726   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-03-07T21:21:23,727   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-03-07T21:21:23,727   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-03-07T21:21:23,728 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-03-07T21:21:23,728 Getting page https://www.piwheels.org/simple/pub-worm/
2024-03-07T21:21:23,730 Found index url https://www.piwheels.org/simple/
2024-03-07T21:21:23,973 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-03-07T21:21:23,975   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-03-07T21:21:23,975 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-03-07T21:21:23,976 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-03-07T21:21:23,996 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-03-07T21:21:24,013 Collecting pub-worm==0.1.1
2024-03-07T21:21:24,016   Created temporary directory: /tmp/pip-unpack-s3x5vvo3
2024-03-07T21:21:24,253   Downloading pub_worm-0.1.1.tar.gz (384 kB)
2024-03-07T21:21:24,513   Added pub-worm==0.1.1 from https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-rzuoveo2'
2024-03-07T21:21:24,516   Running setup.py (path:/tmp/pip-wheel-dl6iz23h/pub-worm_3f10d2e0d20949e4a12f342f63fa79cf/setup.py) egg_info for package pub-worm
2024-03-07T21:21:24,517   Created temporary directory: /tmp/pip-pip-egg-info-s1hy877_
2024-03-07T21:21:24,517   Preparing metadata (setup.py): started
2024-03-07T21:21:24,519   Running command python setup.py egg_info
2024-03-07T21:21:25,651   running egg_info
2024-03-07T21:21:25,653   creating /tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info
2024-03-07T21:21:25,678   writing /tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/PKG-INFO
2024-03-07T21:21:25,682   writing dependency_links to /tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/dependency_links.txt
2024-03-07T21:21:25,684   writing requirements to /tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/requires.txt
2024-03-07T21:21:25,685   writing top-level names to /tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/top_level.txt
2024-03-07T21:21:25,686   writing manifest file '/tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/SOURCES.txt'
2024-03-07T21:21:25,769   reading manifest file '/tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/SOURCES.txt'
2024-03-07T21:21:25,771   reading manifest template 'MANIFEST.in'
2024-03-07T21:21:25,774   writing manifest file '/tmp/pip-pip-egg-info-s1hy877_/pub_worm.egg-info/SOURCES.txt'
2024-03-07T21:21:25,885   Preparing metadata (setup.py): finished with status 'done'
2024-03-07T21:21:25,888   Source in /tmp/pip-wheel-dl6iz23h/pub-worm_3f10d2e0d20949e4a12f342f63fa79cf has version 0.1.1, which satisfies requirement pub-worm==0.1.1 from https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz
2024-03-07T21:21:25,889   Removed pub-worm==0.1.1 from https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-rzuoveo2'
2024-03-07T21:21:25,893 Created temporary directory: /tmp/pip-unpack-rz1pq91u
2024-03-07T21:21:25,894 Created temporary directory: /tmp/pip-unpack-i8dono9s
2024-03-07T21:21:25,898 Building wheels for collected packages: pub-worm
2024-03-07T21:21:25,902   Created temporary directory: /tmp/pip-wheel-eyfywzie
2024-03-07T21:21:25,903   Building wheel for pub-worm (setup.py): started
2024-03-07T21:21:25,904   Destination directory: /tmp/pip-wheel-eyfywzie
2024-03-07T21:21:25,905   Running command python setup.py bdist_wheel
2024-03-07T21:21:27,176   running bdist_wheel
2024-03-07T21:21:27,277   running build
2024-03-07T21:21:27,277   running build_py
2024-03-07T21:21:27,308   creating build
2024-03-07T21:21:27,309   creating build/lib
2024-03-07T21:21:27,310   creating build/lib/pub_worm
2024-03-07T21:21:27,311   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-03-07T21:21:27,313   creating build/lib/pub_worm/wormbase
2024-03-07T21:21:27,314   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-03-07T21:21:27,317   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-03-07T21:21:27,319   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-03-07T21:21:27,321   creating build/lib/pub_worm/ncbi
2024-03-07T21:21:27,322   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-03-07T21:21:27,323   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-03-07T21:21:27,326   creating build/lib/pub_worm/impact_factor
2024-03-07T21:21:27,327   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-03-07T21:21:27,329   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-03-07T21:21:27,331   running egg_info
2024-03-07T21:21:27,388   writing pub_worm.egg-info/PKG-INFO
2024-03-07T21:21:27,391   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-03-07T21:21:27,393   writing requirements to pub_worm.egg-info/requires.txt
2024-03-07T21:21:27,394   writing top-level names to pub_worm.egg-info/top_level.txt
2024-03-07T21:21:27,426   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-03-07T21:21:27,428   reading manifest template 'MANIFEST.in'
2024-03-07T21:21:27,431   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-03-07T21:21:27,434   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-03-07T21:21:27,435   !!

2024-03-07T21:21:27,436           ********************************************************************************
2024-03-07T21:21:27,437           ############################
2024-03-07T21:21:27,437           # Package would be ignored #
2024-03-07T21:21:27,438           ############################
2024-03-07T21:21:27,438           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-03-07T21:21:27,439           but it is absent from setuptools' `packages` configuration.

2024-03-07T21:21:27,440           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-07T21:21:27,440           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-03-07T21:21:27,441           to the `packages` configuration field.

2024-03-07T21:21:27,442           Alternatively, you can also rely on setuptools' discovery methods
2024-03-07T21:21:27,442           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-07T21:21:27,443           instead of `find_packages(...)`/`find:`).

2024-03-07T21:21:27,444           You can read more about "package discovery" on setuptools documentation page:

2024-03-07T21:21:27,445           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-07T21:21:27,446           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-03-07T21:21:27,446           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-03-07T21:21:27,447           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-07T21:21:27,447           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-07T21:21:27,448           combination with a more fine grained `package-data` configuration.

2024-03-07T21:21:27,449           You can read more about "package data files" on setuptools documentation page:

2024-03-07T21:21:27,450           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-07T21:21:27,452           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-07T21:21:27,453                 even if it does not contain any `.py` files.
2024-03-07T21:21:27,453                 On the other hand, currently there is no concept of package data
2024-03-07T21:21:27,454                 directory, all directories are treated like packages.
2024-03-07T21:21:27,455           ********************************************************************************

2024-03-07T21:21:27,459   !!
2024-03-07T21:21:27,463     check.warn(importable)
2024-03-07T21:21:27,476   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-03-07T21:21:27,527   !!

2024-03-07T21:21:27,529           ********************************************************************************
2024-03-07T21:21:27,529           ############################
2024-03-07T21:21:27,530           # Package would be ignored #
2024-03-07T21:21:27,530           ############################
2024-03-07T21:21:27,531           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-03-07T21:21:27,532           but it is absent from setuptools' `packages` configuration.

2024-03-07T21:21:27,533           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-07T21:21:27,534           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-03-07T21:21:27,534           to the `packages` configuration field.

2024-03-07T21:21:27,536           Alternatively, you can also rely on setuptools' discovery methods
2024-03-07T21:21:27,536           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-07T21:21:27,537           instead of `find_packages(...)`/`find:`).

2024-03-07T21:21:27,539           You can read more about "package discovery" on setuptools documentation page:

2024-03-07T21:21:27,540           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-07T21:21:27,540           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-03-07T21:21:27,541           already explicitly excluding 'pub_worm.wormbase.data' via
2024-03-07T21:21:27,541           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-07T21:21:27,542           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-07T21:21:27,542           combination with a more fine grained `package-data` configuration.

2024-03-07T21:21:27,543           You can read more about "package data files" on setuptools documentation page:

2024-03-07T21:21:27,544           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-07T21:21:27,545           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-07T21:21:27,546                 even if it does not contain any `.py` files.
2024-03-07T21:21:27,546                 On the other hand, currently there is no concept of package data
2024-03-07T21:21:27,547                 directory, all directories are treated like packages.
2024-03-07T21:21:27,547           ********************************************************************************

2024-03-07T21:21:27,548   !!
2024-03-07T21:21:27,549     check.warn(importable)
2024-03-07T21:21:27,549   creating build/lib/pub_worm/wormbase/data
2024-03-07T21:21:27,550   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-03-07T21:21:27,550   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-03-07T21:21:27,551   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-03-07T21:21:27,551   creating build/lib/pub_worm/impact_factor/data
2024-03-07T21:21:27,552   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-03-07T21:21:27,562   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-03-07T21:21:27,563   !!

2024-03-07T21:21:27,564           ********************************************************************************
2024-03-07T21:21:27,564           Please avoid running ``setup.py`` directly.
2024-03-07T21:21:27,565           Instead, use pypa/build, pypa/installer or other
2024-03-07T21:21:27,565           standards-based tools.

2024-03-07T21:21:27,566           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-03-07T21:21:27,567           ********************************************************************************

2024-03-07T21:21:27,568   !!
2024-03-07T21:21:27,569     self.initialize_options()
2024-03-07T21:21:27,588   installing to build/bdist.linux-armv7l/wheel
2024-03-07T21:21:27,588   running install
2024-03-07T21:21:27,612   running install_lib
2024-03-07T21:21:27,637   creating build/bdist.linux-armv7l
2024-03-07T21:21:27,637   creating build/bdist.linux-armv7l/wheel
2024-03-07T21:21:27,639   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-03-07T21:21:27,641   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-03-07T21:21:27,643   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-03-07T21:21:27,645   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-03-07T21:21:27,647   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-03-07T21:21:27,650   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-03-07T21:21:27,651   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-03-07T21:21:27,653   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-03-07T21:21:27,655   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-03-07T21:21:27,657   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm
2024-03-07T21:21:27,658   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-03-07T21:21:27,659   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-03-07T21:21:27,661   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-03-07T21:21:27,663   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-03-07T21:21:27,664   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-03-07T21:21:27,666   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-03-07T21:21:27,668   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-03-07T21:21:27,669   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-03-07T21:21:27,722   running install_egg_info
2024-03-07T21:21:27,756   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/pub_worm-0.1.1-py3.11.egg-info
2024-03-07T21:21:27,770   running install_scripts
2024-03-07T21:21:27,784   creating build/bdist.linux-armv7l/wheel/pub_worm-0.1.1.dist-info/WHEEL
2024-03-07T21:21:27,787   creating '/tmp/pip-wheel-eyfywzie/pub_worm-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-07T21:21:27,789   adding 'pub_worm/__init__.py'
2024-03-07T21:21:27,791   adding 'pub_worm/impact_factor/__init__.py'
2024-03-07T21:21:27,793   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-03-07T21:21:27,957   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-03-07T21:21:27,968   adding 'pub_worm/ncbi/__init__.py'
2024-03-07T21:21:27,970   adding 'pub_worm/ncbi/entreze_api.py'
2024-03-07T21:21:27,972   adding 'pub_worm/wormbase/__init__.py'
2024-03-07T21:21:27,974   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-03-07T21:21:27,976   adding 'pub_worm/wormbase/wormbase_api.py'
2024-03-07T21:21:27,978   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-03-07T21:21:27,979   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-03-07T21:21:27,981   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-03-07T21:21:27,983   adding 'pub_worm-0.1.1.dist-info/METADATA'
2024-03-07T21:21:27,984   adding 'pub_worm-0.1.1.dist-info/WHEEL'
2024-03-07T21:21:27,985   adding 'pub_worm-0.1.1.dist-info/top_level.txt'
2024-03-07T21:21:27,986   adding 'pub_worm-0.1.1.dist-info/RECORD'
2024-03-07T21:21:28,003   removing build/bdist.linux-armv7l/wheel
2024-03-07T21:21:28,126   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-03-07T21:21:28,132   Created wheel for pub-worm: filename=pub_worm-0.1.1-py3-none-any.whl size=387946 sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198
2024-03-07T21:21:28,133   Stored in directory: /tmp/pip-ephem-wheel-cache-3r9koqhd/wheels/70/bb/1a/c0f3a1b273fb8eb0885b503e70d77feab01ac49971f3fc5100
2024-03-07T21:21:28,143 Successfully built pub-worm
2024-03-07T21:21:28,162 Removed build tracker: '/tmp/pip-build-tracker-rzuoveo2'