2024-03-07T21:26:32,878 Created temporary directory: /tmp/pip-build-tracker-e7m4444j 2024-03-07T21:26:32,880 Initialized build tracking at /tmp/pip-build-tracker-e7m4444j 2024-03-07T21:26:32,881 Created build tracker: /tmp/pip-build-tracker-e7m4444j 2024-03-07T21:26:32,881 Entered build tracker: /tmp/pip-build-tracker-e7m4444j 2024-03-07T21:26:32,882 Created temporary directory: /tmp/pip-wheel-w6c6myio 2024-03-07T21:26:32,885 Created temporary directory: /tmp/pip-ephem-wheel-cache-f_de89so 2024-03-07T21:26:32,911 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-07T21:26:32,915 2 location(s) to search for versions of pub-worm: 2024-03-07T21:26:32,915 * https://pypi.org/simple/pub-worm/ 2024-03-07T21:26:32,915 * https://www.piwheels.org/simple/pub-worm/ 2024-03-07T21:26:32,916 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/ 2024-03-07T21:26:32,917 Getting page https://pypi.org/simple/pub-worm/ 2024-03-07T21:26:32,918 Found index url https://pypi.org/simple/ 2024-03-07T21:26:33,065 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json 2024-03-07T21:26:33,067 Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1 2024-03-07T21:26:33,068 Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1 2024-03-07T21:26:33,069 Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2 2024-03-07T21:26:33,069 Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3 2024-03-07T21:26:33,070 Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4 2024-03-07T21:26:33,071 Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5 2024-03-07T21:26:33,072 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/ 2024-03-07T21:26:33,073 Getting page https://www.piwheels.org/simple/pub-worm/ 2024-03-07T21:26:33,074 Found index url https://www.piwheels.org/simple/ 2024-03-07T21:26:33,272 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html 2024-03-07T21:26:33,274 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-07T21:26:33,275 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-07T21:26:33,276 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/ 2024-03-07T21:26:33,276 Skipping link: not a file: https://pypi.org/simple/pub-worm/ 2024-03-07T21:26:33,295 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates 2024-03-07T21:26:33,315 Collecting pub-worm==0.1.2 2024-03-07T21:26:33,317 Created temporary directory: /tmp/pip-unpack-8d_1ci1c 2024-03-07T21:26:33,568 Downloading pub_worm-0.1.2.tar.gz (384 kB) 2024-03-07T21:26:33,796 Added pub-worm==0.1.2 from https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-e7m4444j' 2024-03-07T21:26:33,798 Running setup.py (path:/tmp/pip-wheel-w6c6myio/pub-worm_648b5bc0b027468d9a37af3afec6a3b5/setup.py) egg_info for package pub-worm 2024-03-07T21:26:33,799 Created temporary directory: /tmp/pip-pip-egg-info-1glg6yua 2024-03-07T21:26:33,800 Preparing metadata (setup.py): started 2024-03-07T21:26:33,801 Running command python setup.py egg_info 2024-03-07T21:26:34,875 running egg_info 2024-03-07T21:26:34,876 creating /tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info 2024-03-07T21:26:34,904 writing /tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/PKG-INFO 2024-03-07T21:26:34,908 writing dependency_links to /tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/dependency_links.txt 2024-03-07T21:26:34,911 writing requirements to /tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/requires.txt 2024-03-07T21:26:34,912 writing top-level names to /tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/top_level.txt 2024-03-07T21:26:34,914 writing manifest file '/tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/SOURCES.txt' 2024-03-07T21:26:34,996 reading manifest file '/tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/SOURCES.txt' 2024-03-07T21:26:34,998 reading manifest template 'MANIFEST.in' 2024-03-07T21:26:35,001 writing manifest file '/tmp/pip-pip-egg-info-1glg6yua/pub_worm.egg-info/SOURCES.txt' 2024-03-07T21:26:35,111 Preparing metadata (setup.py): finished with status 'done' 2024-03-07T21:26:35,115 Source in /tmp/pip-wheel-w6c6myio/pub-worm_648b5bc0b027468d9a37af3afec6a3b5 has version 0.1.2, which satisfies requirement pub-worm==0.1.2 from https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz 2024-03-07T21:26:35,116 Removed pub-worm==0.1.2 from https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-e7m4444j' 2024-03-07T21:26:35,120 Created temporary directory: /tmp/pip-unpack-9xm97urw 2024-03-07T21:26:35,121 Created temporary directory: /tmp/pip-unpack-01n47ta0 2024-03-07T21:26:35,124 Building wheels for collected packages: pub-worm 2024-03-07T21:26:35,129 Created temporary directory: /tmp/pip-wheel-1vjw5a8h 2024-03-07T21:26:35,129 Building wheel for pub-worm (setup.py): started 2024-03-07T21:26:35,131 Destination directory: /tmp/pip-wheel-1vjw5a8h 2024-03-07T21:26:35,131 Running command python setup.py bdist_wheel 2024-03-07T21:26:36,408 running bdist_wheel 2024-03-07T21:26:36,504 running build 2024-03-07T21:26:36,505 running build_py 2024-03-07T21:26:36,534 creating build 2024-03-07T21:26:36,535 creating build/lib 2024-03-07T21:26:36,536 creating build/lib/pub_worm 2024-03-07T21:26:36,538 copying pub_worm/__init__.py -> build/lib/pub_worm 2024-03-07T21:26:36,540 creating build/lib/pub_worm/wormbase 2024-03-07T21:26:36,542 copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase 2024-03-07T21:26:36,545 copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase 2024-03-07T21:26:36,549 copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase 2024-03-07T21:26:36,553 creating build/lib/pub_worm/ncbi 2024-03-07T21:26:36,555 copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi 2024-03-07T21:26:36,558 copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi 2024-03-07T21:26:36,562 creating build/lib/pub_worm/impact_factor 2024-03-07T21:26:36,563 copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor 2024-03-07T21:26:36,564 copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor 2024-03-07T21:26:36,566 running egg_info 2024-03-07T21:26:36,622 writing pub_worm.egg-info/PKG-INFO 2024-03-07T21:26:36,625 writing dependency_links to pub_worm.egg-info/dependency_links.txt 2024-03-07T21:26:36,626 writing requirements to pub_worm.egg-info/requires.txt 2024-03-07T21:26:36,628 writing top-level names to pub_worm.egg-info/top_level.txt 2024-03-07T21:26:36,659 reading manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-07T21:26:36,662 reading manifest template 'MANIFEST.in' 2024-03-07T21:26:36,665 writing manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-07T21:26:36,667 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration. 2024-03-07T21:26:36,668 !! 2024-03-07T21:26:36,669 ******************************************************************************** 2024-03-07T21:26:36,670 ############################ 2024-03-07T21:26:36,670 # Package would be ignored # 2024-03-07T21:26:36,670 ############################ 2024-03-07T21:26:36,671 Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1], 2024-03-07T21:26:36,671 but it is absent from setuptools' `packages` configuration. 2024-03-07T21:26:36,672 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-07T21:26:36,673 package, please make sure that 'pub_worm.impact_factor.data' is explicitly added 2024-03-07T21:26:36,673 to the `packages` configuration field. 2024-03-07T21:26:36,674 Alternatively, you can also rely on setuptools' discovery methods 2024-03-07T21:26:36,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-07T21:26:36,675 instead of `find_packages(...)`/`find:`). 2024-03-07T21:26:36,676 You can read more about "package discovery" on setuptools documentation page: 2024-03-07T21:26:36,677 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-07T21:26:36,678 If you don't want 'pub_worm.impact_factor.data' to be distributed and are 2024-03-07T21:26:36,679 already explicitly excluding 'pub_worm.impact_factor.data' via 2024-03-07T21:26:36,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-07T21:26:36,680 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-07T21:26:36,680 combination with a more fine grained `package-data` configuration. 2024-03-07T21:26:36,681 You can read more about "package data files" on setuptools documentation page: 2024-03-07T21:26:36,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-07T21:26:36,684 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-07T21:26:36,684 even if it does not contain any `.py` files. 2024-03-07T21:26:36,685 On the other hand, currently there is no concept of package data 2024-03-07T21:26:36,686 directory, all directories are treated like packages. 2024-03-07T21:26:36,686 ******************************************************************************** 2024-03-07T21:26:36,687 !! 2024-03-07T21:26:36,688 check.warn(importable) 2024-03-07T21:26:36,689 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration. 2024-03-07T21:26:36,689 !! 2024-03-07T21:26:36,691 ******************************************************************************** 2024-03-07T21:26:36,692 ############################ 2024-03-07T21:26:36,695 # Package would be ignored # 2024-03-07T21:26:36,697 ############################ 2024-03-07T21:26:36,698 Python recognizes 'pub_worm.wormbase.data' as an importable package[^1], 2024-03-07T21:26:36,699 but it is absent from setuptools' `packages` configuration. 2024-03-07T21:26:36,700 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-07T21:26:36,701 package, please make sure that 'pub_worm.wormbase.data' is explicitly added 2024-03-07T21:26:36,702 to the `packages` configuration field. 2024-03-07T21:26:36,703 Alternatively, you can also rely on setuptools' discovery methods 2024-03-07T21:26:36,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-07T21:26:36,705 instead of `find_packages(...)`/`find:`). 2024-03-07T21:26:36,706 You can read more about "package discovery" on setuptools documentation page: 2024-03-07T21:26:36,707 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-07T21:26:36,708 If you don't want 'pub_worm.wormbase.data' to be distributed and are 2024-03-07T21:26:36,710 already explicitly excluding 'pub_worm.wormbase.data' via 2024-03-07T21:26:36,712 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-07T21:26:36,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-07T21:26:36,761 combination with a more fine grained `package-data` configuration. 2024-03-07T21:26:36,762 You can read more about "package data files" on setuptools documentation page: 2024-03-07T21:26:36,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-07T21:26:36,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-07T21:26:36,766 even if it does not contain any `.py` files. 2024-03-07T21:26:36,766 On the other hand, currently there is no concept of package data 2024-03-07T21:26:36,767 directory, all directories are treated like packages. 2024-03-07T21:26:36,768 ******************************************************************************** 2024-03-07T21:26:36,769 !! 2024-03-07T21:26:36,769 check.warn(importable) 2024-03-07T21:26:36,770 creating build/lib/pub_worm/wormbase/data 2024-03-07T21:26:36,771 copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-07T21:26:36,771 copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data 2024-03-07T21:26:36,772 copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-07T21:26:36,772 creating build/lib/pub_worm/impact_factor/data 2024-03-07T21:26:36,773 copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data 2024-03-07T21:26:36,792 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-07T21:26:36,792 !! 2024-03-07T21:26:36,794 ******************************************************************************** 2024-03-07T21:26:36,794 Please avoid running ``setup.py`` directly. 2024-03-07T21:26:36,795 Instead, use pypa/build, pypa/installer or other 2024-03-07T21:26:36,795 standards-based tools. 2024-03-07T21:26:36,797 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-07T21:26:36,797 ******************************************************************************** 2024-03-07T21:26:36,798 !! 2024-03-07T21:26:36,799 self.initialize_options() 2024-03-07T21:26:36,818 installing to build/bdist.linux-armv7l/wheel 2024-03-07T21:26:36,818 running install 2024-03-07T21:26:36,843 running install_lib 2024-03-07T21:26:36,871 creating build/bdist.linux-armv7l 2024-03-07T21:26:36,872 creating build/bdist.linux-armv7l/wheel 2024-03-07T21:26:36,873 creating build/bdist.linux-armv7l/wheel/pub_worm 2024-03-07T21:26:36,875 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-07T21:26:36,876 copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-07T21:26:36,879 copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-07T21:26:36,881 copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-07T21:26:36,883 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-07T21:26:36,884 copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-07T21:26:36,886 copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-07T21:26:36,888 copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-07T21:26:36,890 copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm 2024-03-07T21:26:36,892 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-07T21:26:36,893 copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-07T21:26:36,895 copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-07T21:26:36,898 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-07T21:26:36,899 copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-07T21:26:36,901 copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-07T21:26:36,903 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-07T21:26:36,904 copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-07T21:26:36,944 running install_egg_info 2024-03-07T21:26:36,975 Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/pub_worm-0.1.2-py3.11.egg-info 2024-03-07T21:26:36,988 running install_scripts 2024-03-07T21:26:36,999 creating build/bdist.linux-armv7l/wheel/pub_worm-0.1.2.dist-info/WHEEL 2024-03-07T21:26:37,002 creating '/tmp/pip-wheel-1vjw5a8h/pub_worm-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-07T21:26:37,004 adding 'pub_worm/__init__.py' 2024-03-07T21:26:37,006 adding 'pub_worm/impact_factor/__init__.py' 2024-03-07T21:26:37,007 adding 'pub_worm/impact_factor/impact_factor_lookup.py' 2024-03-07T21:26:37,172 adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv' 2024-03-07T21:26:37,182 adding 'pub_worm/ncbi/__init__.py' 2024-03-07T21:26:37,184 adding 'pub_worm/ncbi/entreze_api.py' 2024-03-07T21:26:37,186 adding 'pub_worm/wormbase/__init__.py' 2024-03-07T21:26:37,187 adding 'pub_worm/wormbase/to_csv_helpers.py' 2024-03-07T21:26:37,189 adding 'pub_worm/wormbase/wormbase_api.py' 2024-03-07T21:26:37,191 adding 'pub_worm/wormbase/data/wormbase_field_gene.json' 2024-03-07T21:26:37,192 adding 'pub_worm/wormbase/data/wormbase_field_paper.json' 2024-03-07T21:26:37,193 adding 'pub_worm/wormbase/data/wormbase_widget_gene.json' 2024-03-07T21:26:37,195 adding 'pub_worm-0.1.2.dist-info/METADATA' 2024-03-07T21:26:37,196 adding 'pub_worm-0.1.2.dist-info/WHEEL' 2024-03-07T21:26:37,198 adding 'pub_worm-0.1.2.dist-info/top_level.txt' 2024-03-07T21:26:37,198 adding 'pub_worm-0.1.2.dist-info/RECORD' 2024-03-07T21:26:37,211 removing build/bdist.linux-armv7l/wheel 2024-03-07T21:26:37,332 Building wheel for pub-worm (setup.py): finished with status 'done' 2024-03-07T21:26:37,338 Created wheel for pub-worm: filename=pub_worm-0.1.2-py3-none-any.whl size=387942 sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb 2024-03-07T21:26:37,340 Stored in directory: /tmp/pip-ephem-wheel-cache-f_de89so/wheels/9e/62/b7/66c73a381be31cd087c7b6bbdb8571077d7650d6a46e320530 2024-03-07T21:26:37,350 Successfully built pub-worm 2024-03-07T21:26:37,371 Removed build tracker: '/tmp/pip-build-tracker-e7m4444j'