2024-03-08T03:25:04,027 Created temporary directory: /tmp/pip-build-tracker-rlbudmvw
2024-03-08T03:25:04,029 Initialized build tracking at /tmp/pip-build-tracker-rlbudmvw
2024-03-08T03:25:04,029 Created build tracker: /tmp/pip-build-tracker-rlbudmvw
2024-03-08T03:25:04,029 Entered build tracker: /tmp/pip-build-tracker-rlbudmvw
2024-03-08T03:25:04,030 Created temporary directory: /tmp/pip-wheel-gslg0aif
2024-03-08T03:25:04,034 Created temporary directory: /tmp/pip-ephem-wheel-cache-z6xwwk6a
2024-03-08T03:25:04,060 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-08T03:25:04,064 2 location(s) to search for versions of moleculekit:
2024-03-08T03:25:04,064 * https://pypi.org/simple/moleculekit/
2024-03-08T03:25:04,064 * https://www.piwheels.org/simple/moleculekit/
2024-03-08T03:25:04,064 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-03-08T03:25:04,065 Getting page https://pypi.org/simple/moleculekit/
2024-03-08T03:25:04,067 Found index url https://pypi.org/simple/
2024-03-08T03:25:04,199 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-03-08T03:25:04,242   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,242   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-03-08T03:25:04,243   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,243   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-03-08T03:25:04,243   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,243   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-03-08T03:25:04,244   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,244   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-03-08T03:25:04,244   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,244   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-03-08T03:25:04,245   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,245   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-03-08T03:25:04,245   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,245   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-03-08T03:25:04,246   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,246   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-03-08T03:25:04,246   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,246   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-03-08T03:25:04,246   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,247   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-03-08T03:25:04,247   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,247   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-03-08T03:25:04,247   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,248   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-03-08T03:25:04,248   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,248   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-03-08T03:25:04,248   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,248   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-03-08T03:25:04,249   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,249   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-03-08T03:25:04,249   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,249   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-03-08T03:25:04,250   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,250   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-03-08T03:25:04,250   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,250   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-03-08T03:25:04,250   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,251   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-03-08T03:25:04,251   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,251   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-03-08T03:25:04,251   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,252   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-03-08T03:25:04,252   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,252   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-03-08T03:25:04,252   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,253   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-03-08T03:25:04,253   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,253   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-03-08T03:25:04,253   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,254   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-03-08T03:25:04,254   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,254   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-03-08T03:25:04,254   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,254   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-03-08T03:25:04,255   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,255   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-03-08T03:25:04,255   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,255   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-03-08T03:25:04,256   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,256   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-03-08T03:25:04,256   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,256   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-03-08T03:25:04,257   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,257   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-03-08T03:25:04,257   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,257   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-03-08T03:25:04,257   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,258   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
2024-03-08T03:25:04,258   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/eb/72/b091a120100302ee0b23d184377c59cbc0a7ba597225f90328ce36f00504/moleculekit-0.3.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,258   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
2024-03-08T03:25:04,258   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ae/89/c715eb0cf182a9cb1a212bce6ad534233eefff156c11e86a228a9fcf5ebc/moleculekit-0.3.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,259   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
2024-03-08T03:25:04,259   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/93/60/0d8fb434654ca07dbd7e9ce3f8d8083e435866650d2a6423bd1fe39cfcf2/moleculekit-0.3.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,259   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
2024-03-08T03:25:04,259   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/94/5a/b800d3737fc73a0197bf983ce179f8bedaa71a331029a733aefedc2a8a0c/moleculekit-0.3.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,259   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
2024-03-08T03:25:04,260   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/c1/d073c238d26f3e4aaec53de003bc232d6758dbfd334f0f0af7aa2b50f941/moleculekit-0.3.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,260   Found link https://files.pythonhosted.org/packages/29/c4/2af9ce826d6a8d2327401dd1a05b3beff8e1f96911d0e334db20410975ee/moleculekit-0.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.7
2024-03-08T03:25:04,260   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e3/2d/da6853b8eb526f2a035e5996ae697422594832d9f890a66977981d46edec/moleculekit-0.3.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,260   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
2024-03-08T03:25:04,261   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1f/d2/4da1254f5b07bedf974fdb9f19ab694a6cf553dc50ab700e3b09ec000031/moleculekit-0.3.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,261   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-03-08T03:25:04,261   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,261   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-03-08T03:25:04,262   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,262   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
2024-03-08T03:25:04,262   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ed/8c/cf4a2f026f7b867bcc33cfac6c1fede5ee244c962112f0dc245fcac0939b/moleculekit-0.4.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,262   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-03-08T03:25:04,262   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,263   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
2024-03-08T03:25:04,263   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/26/45/55b970222953abfaff88d3ee5bbe64b544af8e686254b80f9dbcdc027754/moleculekit-0.4.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,263   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-03-08T03:25:04,263   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,264   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
2024-03-08T03:25:04,264   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3f/a5/68b5af554f766d3dceef94275a75af28358200e0f741a86d38db878c60e1/moleculekit-0.4.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,264   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
2024-03-08T03:25:04,264   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,265   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
2024-03-08T03:25:04,265   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/b0/15/bc106c1d99e2b235c80427b4d70f6392bf76a9fe17d2c8df562a03a79aaf/moleculekit-0.5.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,265   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
2024-03-08T03:25:04,265   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/11/34/1eef198a596de2bbe11b5d156183d4e8853296cee4f6eccb1e93f1acfe6b/moleculekit-0.5.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,265   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
2024-03-08T03:25:04,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/c2/ae/6dcb36295ba009458f4ac17d3099f65f30ef7b52ee289ce857eaa09901e9/moleculekit-0.5.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5e/49/34aa32d017a3ff0c43e9743813fb882a1b2f4721a6429a14d3974d30b013/moleculekit-0.5.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/33/cb/c92c01bcbe6721a0de0efc2a6000170f30941c58471578d25966f935c655/moleculekit-0.5.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/13/6a/e73e6d343e35473a200e0744ab09efaa39adeebbbe191f752bc23d7a9b3a/moleculekit-0.5.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-08T03:25:04,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ef/e5/e9f15109917029fac97a7f95074506e4385d7c63a4eebc1abda4ef22cf5e/moleculekit-0.6.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-08T03:25:04,268   Found link https://files.pythonhosted.org/packages/ab/f4/62f8b76e0a25ee6b464bdbc1091fcd00f7a573f812621a25dd317ba75abc/moleculekit-0.6.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.6.8
2024-03-08T03:25:04,268   Found link https://files.pythonhosted.org/packages/17/1c/02715b1ba7af95549df42e637af515cc5f062c0a6fb8bdeca03404949043/moleculekit-0.7.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.0
2024-03-08T03:25:04,268   Found link https://files.pythonhosted.org/packages/11/db/cacac96b0834f91112e6f5773f2cab9f455deaabbc5daf37d43a7b384e30/moleculekit-0.7.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.1
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2024-03-08T03:25:04,274   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-03-08T03:25:04,274   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-03-08T03:25:04,274   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-03-08T03:25:04,275   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-03-08T03:25:04,275   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-03-08T03:25:04,275   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-03-08T03:25:04,275   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-03-08T03:25:04,276   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-03-08T03:25:04,276   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-03-08T03:25:04,276   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-03-08T03:25:04,277   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-03-08T03:25:04,277   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-03-08T03:25:04,277   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-03-08T03:25:04,277   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-03-08T03:25:04,278   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-03-08T03:25:04,278   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-03-08T03:25:04,278   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-03-08T03:25:04,278   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-03-08T03:25:04,279   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-03-08T03:25:04,279   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-03-08T03:25:04,279   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-03-08T03:25:04,279   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-03-08T03:25:04,280   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-03-08T03:25:04,280   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-03-08T03:25:04,280   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-03-08T03:25:04,280   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-03-08T03:25:04,281   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-03-08T03:25:04,281   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-03-08T03:25:04,281   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-03-08T03:25:04,281   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-03-08T03:25:04,282   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-03-08T03:25:04,282   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-03-08T03:25:04,282   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-03-08T03:25:04,282   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-03-08T03:25:04,283   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-03-08T03:25:04,283   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-03-08T03:25:04,283   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-03-08T03:25:04,284   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-03-08T03:25:04,284   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-03-08T03:25:04,284   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-03-08T03:25:04,284   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-03-08T03:25:04,285   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-03-08T03:25:04,285   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-03-08T03:25:04,285   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-03-08T03:25:04,286   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-03-08T03:25:04,286   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-03-08T03:25:04,286   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-03-08T03:25:04,286   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-03-08T03:25:04,287   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-03-08T03:25:04,287   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-03-08T03:25:04,288   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-03-08T03:25:04,289   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-03-08T03:25:04,289   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-03-08T03:25:04,290   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-03-08T03:25:04,290   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-03-08T03:25:04,291   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-03-08T03:25:04,291   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-03-08T03:25:04,292   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-03-08T03:25:04,292   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-03-08T03:25:04,293   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-03-08T03:25:04,293   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-03-08T03:25:04,294   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-03-08T03:25:04,294   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-03-08T03:25:04,295   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-03-08T03:25:04,295   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-03-08T03:25:04,296   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-03-08T03:25:04,296   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-03-08T03:25:04,297   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-03-08T03:25:04,297   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-03-08T03:25:04,298   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-03-08T03:25:04,299   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-03-08T03:25:04,299   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-03-08T03:25:04,300   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-03-08T03:25:04,300   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-03-08T03:25:04,301   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-03-08T03:25:04,301   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-03-08T03:25:04,302   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-03-08T03:25:04,302   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-03-08T03:25:04,303   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-03-08T03:25:04,303   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-03-08T03:25:04,304   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-03-08T03:25:04,304   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-03-08T03:25:04,305   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-03-08T03:25:04,305   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-03-08T03:25:04,306   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-03-08T03:25:04,306   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-03-08T03:25:04,307   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-03-08T03:25:04,307   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-03-08T03:25:04,308   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-03-08T03:25:04,308   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-03-08T03:25:04,309   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-03-08T03:25:04,310   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-03-08T03:25:04,310   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-03-08T03:25:04,311   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-03-08T03:25:04,311   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-03-08T03:25:04,312   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-03-08T03:25:04,312   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-03-08T03:25:04,313   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-03-08T03:25:04,313   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-03-08T03:25:04,314   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-03-08T03:25:04,314   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-03-08T03:25:04,315   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-03-08T03:25:04,315   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-03-08T03:25:04,316   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-03-08T03:25:04,316   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-03-08T03:25:04,317 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-03-08T03:25:04,317 Getting page https://www.piwheels.org/simple/moleculekit/
2024-03-08T03:25:04,318 Found index url https://www.piwheels.org/simple/
2024-03-08T03:25:04,407 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-03-08T03:25:04,498   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-08T03:25:04,498   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv6l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,499   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-08T03:25:04,499   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv6l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,499   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv6l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv7l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv6l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv7l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,500   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv6l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,501   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv7l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,502   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-08T03:25:04,502   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-08T03:25:04,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,535   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,536   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,537   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,538   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,539   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,540   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,541   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,542   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,543   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,544   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,545   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,551   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,552   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,552   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,553   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,554   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-08T03:25:04,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-08T03:25:04,601 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-03-08T03:25:04,617 Collecting moleculekit==1.8.18
2024-03-08T03:25:04,619   Created temporary directory: /tmp/pip-unpack-60z3mbp_
2024-03-08T03:25:04,822   Downloading moleculekit-1.8.18.tar.gz (6.7 MB)
2024-03-08T03:25:08,061   Added moleculekit==1.8.18 from https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz to build tracker '/tmp/pip-build-tracker-rlbudmvw'
2024-03-08T03:25:08,069   Created temporary directory: /tmp/pip-build-env-qogt3a7e
2024-03-08T03:25:08,079   Installing build dependencies: started
2024-03-08T03:25:08,080   Running command pip subprocess to install build dependencies
2024-03-08T03:25:09,234   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-03-08T03:25:09,768   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-08T03:25:11,337   Collecting setuptools
2024-03-08T03:25:11,354     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB)
2024-03-08T03:25:12,385   Collecting numpy>=1.18.5
2024-03-08T03:25:12,396     Downloading https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-03-08T03:25:14,924        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.6/5.6 MB 2.2 MB/s eta 0:00:00
2024-03-08T03:25:16,435   Collecting Cython>=0.29.21
2024-03-08T03:25:16,467     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-03-08T03:25:16,871   Collecting toml
2024-03-08T03:25:16,883     Downloading https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-03-08T03:25:17,070   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-03-08T03:25:17,139     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-03-08T03:25:17,157        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.6 MB/s eta 0:00:00
2024-03-08T03:25:17,284   Collecting tomli (from versioneer[toml]==0.28)
2024-03-08T03:25:17,313     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-03-08T03:25:19,181   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-03-08T03:25:19,216     Creating /tmp/pip-build-env-qogt3a7e/overlay/bin
2024-03-08T03:25:19,218     changing mode of /tmp/pip-build-env-qogt3a7e/overlay/bin/versioneer to 755
2024-03-08T03:25:28,975     changing mode of /tmp/pip-build-env-qogt3a7e/overlay/bin/f2py to 755
2024-03-08T03:25:32,326     changing mode of /tmp/pip-build-env-qogt3a7e/overlay/bin/cygdb to 755
2024-03-08T03:25:32,328     changing mode of /tmp/pip-build-env-qogt3a7e/overlay/bin/cython to 755
2024-03-08T03:25:32,330     changing mode of /tmp/pip-build-env-qogt3a7e/overlay/bin/cythonize to 755
2024-03-08T03:25:32,355   Successfully installed Cython-3.0.9 numpy-1.26.4 setuptools-69.1.1 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-03-08T03:25:33,001   Installing build dependencies: finished with status 'done'
2024-03-08T03:25:33,005   Getting requirements to build wheel: started
2024-03-08T03:25:33,006   Running command Getting requirements to build wheel
2024-03-08T03:26:13,822   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-03-08T03:26:16,699   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it changed.
2024-03-08T03:26:16,699   Compiling moleculekit/interactions/pipi/pipi.pyx because it changed.
2024-03-08T03:26:16,699   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/wrapping/wrapping.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/distance_utils/distance_utils.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it changed.
2024-03-08T03:26:16,700   Compiling moleculekit/fileformats/xtc/xtc.pyx because it changed.
2024-03-08T03:26:16,701   Compiling moleculekit/fileformats/xtc/trr.pyx because it changed.
2024-03-08T03:26:16,701   Compiling moleculekit/fileformats/dcd/dcd.pyx because it changed.
2024-03-08T03:26:16,701   Compiling moleculekit/fileformats/binpos/binpos.pyx because it changed.
2024-03-08T03:26:16,701   Compiling moleculekit/tmalign/tmalign_util.pyx because it changed.
2024-03-08T03:26:16,701   [ 1/14] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-03-08T03:26:16,701   [ 2/14] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-03-08T03:26:16,701   [ 3/14] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-03-08T03:26:16,701   [ 4/14] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-03-08T03:26:16,702   [ 5/14] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-03-08T03:26:16,702   [ 6/14] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-03-08T03:26:16,702   [ 7/14] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-03-08T03:26:16,702   [ 8/14] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-03-08T03:26:16,702   [ 9/14] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-03-08T03:26:16,702   [10/14] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-03-08T03:26:16,702   [11/14] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-03-08T03:26:16,702   [12/14] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-03-08T03:26:16,703   [13/14] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-03-08T03:26:16,703   [14/14] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-03-08T03:26:17,489   running egg_info
2024-03-08T03:26:17,495   writing moleculekit.egg-info/PKG-INFO
2024-03-08T03:26:17,499   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-08T03:26:17,501   writing requirements to moleculekit.egg-info/requires.txt
2024-03-08T03:26:17,502   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-08T03:26:17,534   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,534   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,534   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,535   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,535   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,536   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,537   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,537   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,537   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,537   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,537   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:17,537   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:17,538   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:17,562   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-08T03:26:17,596   reading manifest template 'MANIFEST.in'
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2024-03-08T03:26:17,852   adding license file 'LICENSE'
2024-03-08T03:26:17,870   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-08T03:26:19,331   Getting requirements to build wheel: finished with status 'done'
2024-03-08T03:26:19,345   Installing backend dependencies: started
2024-03-08T03:26:19,346   Running command pip subprocess to install backend dependencies
2024-03-08T03:26:20,599   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-03-08T03:26:21,163   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-08T03:26:21,811   Collecting wheel
2024-03-08T03:26:21,837     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-03-08T03:26:23,310   Installing collected packages: wheel
2024-03-08T03:26:23,527     Creating /tmp/pip-build-env-qogt3a7e/normal/bin
2024-03-08T03:26:23,529     changing mode of /tmp/pip-build-env-qogt3a7e/normal/bin/wheel to 755
2024-03-08T03:26:23,542   Successfully installed wheel-0.42.0
2024-03-08T03:26:23,937   Installing backend dependencies: finished with status 'done'
2024-03-08T03:26:23,940   Created temporary directory: /tmp/pip-modern-metadata-nj25sj68
2024-03-08T03:26:23,942   Preparing metadata (pyproject.toml): started
2024-03-08T03:26:23,943   Running command Preparing metadata (pyproject.toml)
2024-03-08T03:26:26,415   running dist_info
2024-03-08T03:26:26,416   creating /tmp/pip-modern-metadata-nj25sj68/moleculekit.egg-info
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2024-03-08T03:26:26,463   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:26,466   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,467   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:26,467   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,467   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:26,468   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,468   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,468   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:26,468   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-03-08T03:26:26,472   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,473   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,473   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,473   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,474   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,474   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:26,481   reading manifest file '/tmp/pip-modern-metadata-nj25sj68/moleculekit.egg-info/SOURCES.txt'
2024-03-08T03:26:26,483   reading manifest template 'MANIFEST.in'
2024-03-08T03:26:26,749   no previously-included directories found matching 'moleculekit/test-data'
2024-03-08T03:26:26,750   no previously-included directories found matching 'moleculekit/tests'
2024-03-08T03:26:26,751   no previously-included directories found matching 'package'
2024-03-08T03:26:26,751   adding license file 'LICENSE'
2024-03-08T03:26:26,765   writing manifest file '/tmp/pip-modern-metadata-nj25sj68/moleculekit.egg-info/SOURCES.txt'
2024-03-08T03:26:26,773   creating '/tmp/pip-modern-metadata-nj25sj68/moleculekit-1.8.18.dist-info'
2024-03-08T03:26:26,969   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-08T03:26:26,975   Source in /tmp/pip-wheel-gslg0aif/moleculekit_2592ec0408794d4faad2fd22fc8f7dfe has version 1.8.18, which satisfies requirement moleculekit==1.8.18 from https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz
2024-03-08T03:26:26,976   Removed moleculekit==1.8.18 from https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz from build tracker '/tmp/pip-build-tracker-rlbudmvw'
2024-03-08T03:26:26,982 Created temporary directory: /tmp/pip-unpack-5r3e84ke
2024-03-08T03:26:26,983 Created temporary directory: /tmp/pip-unpack-57ubf5kw
2024-03-08T03:26:26,991 Building wheels for collected packages: moleculekit
2024-03-08T03:26:26,995   Created temporary directory: /tmp/pip-wheel-i472lbnl
2024-03-08T03:26:26,995   Destination directory: /tmp/pip-wheel-i472lbnl
2024-03-08T03:26:26,997   Building wheel for moleculekit (pyproject.toml): started
2024-03-08T03:26:26,998   Running command Building wheel for moleculekit (pyproject.toml)
2024-03-08T03:26:29,310   running bdist_wheel
2024-03-08T03:26:29,326   running build
2024-03-08T03:26:29,327   running build_py
2024-03-08T03:26:29,340   creating build
2024-03-08T03:26:29,341   creating build/lib.linux-armv7l-cpython-39
2024-03-08T03:26:29,341   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,342   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,344   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,347   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,348   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,350   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,351   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,355   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,357   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,359   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,362   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,363   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,366   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,367   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,372   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,374   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,376   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,377   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,379   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,381   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,383   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,384   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:29,387   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-08T03:26:29,388   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-08T03:26:29,390   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-08T03:26:29,393   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-08T03:26:29,394   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-08T03:26:29,397   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-08T03:26:29,399   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-08T03:26:29,401   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-03-08T03:26:29,402   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-03-08T03:26:29,404   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-08T03:26:29,405   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-08T03:26:29,407   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-08T03:26:29,409   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-08T03:26:29,413   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-08T03:26:29,414   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-08T03:26:29,416   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-08T03:26:29,418   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-08T03:26:29,419   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-08T03:26:29,423   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,424   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,427   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,429   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,431   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,433   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,435   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,437   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,440   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,442   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,444   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,446   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,448   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,450   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,452   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-08T03:26:29,455   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,456   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,458   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,461   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,463   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,465   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,467   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,469   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,471   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,473   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,476   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,478   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,480   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,482   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,484   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,486   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-08T03:26:29,489   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,490   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,492   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,494   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,497   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,499   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,501   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-08T03:26:29,504   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-08T03:26:29,505   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-08T03:26:29,507   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-08T03:26:29,509   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-08T03:26:29,511   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-08T03:26:29,514   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-08T03:26:29,515   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-08T03:26:29,517   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-08T03:26:29,519   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-08T03:26:29,520   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-08T03:26:29,522   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-08T03:26:29,524   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-08T03:26:29,526   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-08T03:26:29,528   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-08T03:26:29,529   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-08T03:26:29,531   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-08T03:26:29,533   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-08T03:26:29,534   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-08T03:26:29,536   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-08T03:26:29,538   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-08T03:26:29,539   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-08T03:26:29,542   running egg_info
2024-03-08T03:26:29,547   writing moleculekit.egg-info/PKG-INFO
2024-03-08T03:26:29,550   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-08T03:26:29,552   writing requirements to moleculekit.egg-info/requires.txt
2024-03-08T03:26:29,556   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-08T03:26:29,575   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,575   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,575   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,575   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,575   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,576   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,577   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,578   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,579   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,580   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,581   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,582   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,582   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,582   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,583   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,583   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,584   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,584   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,584   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,585   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,585   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,585   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,585   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,585   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,586   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,586   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,586   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,586   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,586   dependency /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-08T03:26:29,593   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-08T03:26:29,602   reading manifest template 'MANIFEST.in'
2024-03-08T03:26:29,890   no previously-included directories found matching 'moleculekit/test-data'
2024-03-08T03:26:29,892   no previously-included directories found matching 'moleculekit/tests'
2024-03-08T03:26:29,893   no previously-included directories found matching 'package'
2024-03-08T03:26:29,893   adding license file 'LICENSE'
2024-03-08T03:26:29,911   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-08T03:26:29,922   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-03-08T03:26:29,922   !!

2024-03-08T03:26:29,922           ********************************************************************************
2024-03-08T03:26:29,923           ############################
2024-03-08T03:26:29,923           # Package would be ignored #
2024-03-08T03:26:29,923           ############################
2024-03-08T03:26:29,923           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-03-08T03:26:29,923           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,923           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,923           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-03-08T03:26:29,924           to the `packages` configuration field.

2024-03-08T03:26:29,924           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,924           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,924           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,924           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,924           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,925           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-03-08T03:26:29,925           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-03-08T03:26:29,925           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,925           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,925           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,925           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,926           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,926           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,926                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,926                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,926                 directory, all directories are treated like packages.
2024-03-08T03:26:29,926           ********************************************************************************

2024-03-08T03:26:29,927   !!
2024-03-08T03:26:29,927     check.warn(importable)
2024-03-08T03:26:29,927   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-03-08T03:26:29,927   !!

2024-03-08T03:26:29,927           ********************************************************************************
2024-03-08T03:26:29,927           ############################
2024-03-08T03:26:29,928           # Package would be ignored #
2024-03-08T03:26:29,928           ############################
2024-03-08T03:26:29,928           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-03-08T03:26:29,928           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,928           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,928           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-03-08T03:26:29,928           to the `packages` configuration field.

2024-03-08T03:26:29,929           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,929           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,929           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,929           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,929           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,929           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-03-08T03:26:29,930           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-03-08T03:26:29,930           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,930           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,930           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,930           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,930           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,931           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,931                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,931                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,931                 directory, all directories are treated like packages.
2024-03-08T03:26:29,931           ********************************************************************************

2024-03-08T03:26:29,931   !!
2024-03-08T03:26:29,932     check.warn(importable)
2024-03-08T03:26:29,932   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-03-08T03:26:29,932   !!

2024-03-08T03:26:29,932           ********************************************************************************
2024-03-08T03:26:29,932           ############################
2024-03-08T03:26:29,932           # Package would be ignored #
2024-03-08T03:26:29,932           ############################
2024-03-08T03:26:29,932           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-03-08T03:26:29,933           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,933           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,933           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-03-08T03:26:29,933           to the `packages` configuration field.

2024-03-08T03:26:29,933           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,933           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,933           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,934           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,934           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,934           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-03-08T03:26:29,934           already explicitly excluding 'moleculekit.distance_utils' via
2024-03-08T03:26:29,934           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,934           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,935           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,935           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,935           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,935           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,935                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,936                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,936                 directory, all directories are treated like packages.
2024-03-08T03:26:29,936           ********************************************************************************

2024-03-08T03:26:29,936   !!
2024-03-08T03:26:29,936     check.warn(importable)
2024-03-08T03:26:29,936   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-03-08T03:26:29,936   !!

2024-03-08T03:26:29,936           ********************************************************************************
2024-03-08T03:26:29,937           ############################
2024-03-08T03:26:29,937           # Package would be ignored #
2024-03-08T03:26:29,937           ############################
2024-03-08T03:26:29,937           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-03-08T03:26:29,937           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,937           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,937           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-03-08T03:26:29,937           to the `packages` configuration field.

2024-03-08T03:26:29,938           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,938           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,938           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,938           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,938           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,939           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-03-08T03:26:29,939           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-03-08T03:26:29,939           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,939           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,939           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,939           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,939           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,940           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,940                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,940                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,940                 directory, all directories are treated like packages.
2024-03-08T03:26:29,940           ********************************************************************************

2024-03-08T03:26:29,940   !!
2024-03-08T03:26:29,940     check.warn(importable)
2024-03-08T03:26:29,941   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-03-08T03:26:29,941   !!

2024-03-08T03:26:29,941           ********************************************************************************
2024-03-08T03:26:29,941           ############################
2024-03-08T03:26:29,941           # Package would be ignored #
2024-03-08T03:26:29,941           ############################
2024-03-08T03:26:29,941           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-03-08T03:26:29,941           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,942           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,942           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-03-08T03:26:29,942           to the `packages` configuration field.

2024-03-08T03:26:29,942           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,942           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,942           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,943           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,943           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,943           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-03-08T03:26:29,943           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-03-08T03:26:29,943           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,943           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,943           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,944           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,944           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,944           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,944                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,944                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,945                 directory, all directories are treated like packages.
2024-03-08T03:26:29,945           ********************************************************************************

2024-03-08T03:26:29,945   !!
2024-03-08T03:26:29,945     check.warn(importable)
2024-03-08T03:26:29,945   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-03-08T03:26:29,945   !!

2024-03-08T03:26:29,945           ********************************************************************************
2024-03-08T03:26:29,946           ############################
2024-03-08T03:26:29,946           # Package would be ignored #
2024-03-08T03:26:29,946           ############################
2024-03-08T03:26:29,946           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-03-08T03:26:29,946           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,946           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,946           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-03-08T03:26:29,946           to the `packages` configuration field.

2024-03-08T03:26:29,947           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,947           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,947           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,947           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,947           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,947           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-03-08T03:26:29,948           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-03-08T03:26:29,948           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,948           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,948           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,948           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,948           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,949           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,949                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,949                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,949                 directory, all directories are treated like packages.
2024-03-08T03:26:29,949           ********************************************************************************

2024-03-08T03:26:29,949   !!
2024-03-08T03:26:29,949     check.warn(importable)
2024-03-08T03:26:29,950   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-03-08T03:26:29,950   !!

2024-03-08T03:26:29,950           ********************************************************************************
2024-03-08T03:26:29,950           ############################
2024-03-08T03:26:29,950           # Package would be ignored #
2024-03-08T03:26:29,950           ############################
2024-03-08T03:26:29,950           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-03-08T03:26:29,950           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,951           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,951           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-03-08T03:26:29,951           to the `packages` configuration field.

2024-03-08T03:26:29,951           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,951           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,951           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,952           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,952           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,952           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-03-08T03:26:29,952           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-03-08T03:26:29,952           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,952           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,953           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,953           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,953           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,953           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,953                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,954                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,954                 directory, all directories are treated like packages.
2024-03-08T03:26:29,954           ********************************************************************************

2024-03-08T03:26:29,954   !!
2024-03-08T03:26:29,954     check.warn(importable)
2024-03-08T03:26:29,954   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-03-08T03:26:29,954   !!

2024-03-08T03:26:29,955           ********************************************************************************
2024-03-08T03:26:29,955           ############################
2024-03-08T03:26:29,955           # Package would be ignored #
2024-03-08T03:26:29,955           ############################
2024-03-08T03:26:29,955           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-03-08T03:26:29,955           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,955           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,955           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-03-08T03:26:29,955           to the `packages` configuration field.

2024-03-08T03:26:29,956           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,956           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,956           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,956           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,956           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,957           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-03-08T03:26:29,957           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-03-08T03:26:29,957           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,957           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,957           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,957           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,957           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,958           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,958                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,958                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,958                 directory, all directories are treated like packages.
2024-03-08T03:26:29,958           ********************************************************************************

2024-03-08T03:26:29,958   !!
2024-03-08T03:26:29,958     check.warn(importable)
2024-03-08T03:26:29,959   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-03-08T03:26:29,959   !!

2024-03-08T03:26:29,959           ********************************************************************************
2024-03-08T03:26:29,959           ############################
2024-03-08T03:26:29,959           # Package would be ignored #
2024-03-08T03:26:29,959           ############################
2024-03-08T03:26:29,959           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-03-08T03:26:29,959           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,960           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,960           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-03-08T03:26:29,960           to the `packages` configuration field.

2024-03-08T03:26:29,960           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,960           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,960           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,961           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,961           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,961           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-03-08T03:26:29,961           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-03-08T03:26:29,961           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,961           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,962           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,962           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,962           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,962           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,962                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,962                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,963                 directory, all directories are treated like packages.
2024-03-08T03:26:29,963           ********************************************************************************

2024-03-08T03:26:29,963   !!
2024-03-08T03:26:29,963     check.warn(importable)
2024-03-08T03:26:29,963   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-03-08T03:26:29,963   !!

2024-03-08T03:26:29,963           ********************************************************************************
2024-03-08T03:26:29,964           ############################
2024-03-08T03:26:29,964           # Package would be ignored #
2024-03-08T03:26:29,964           ############################
2024-03-08T03:26:29,964           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-03-08T03:26:29,964           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,964           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,964           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-03-08T03:26:29,964           to the `packages` configuration field.

2024-03-08T03:26:29,965           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,965           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,965           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,965           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,965           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,966           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-03-08T03:26:29,966           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-03-08T03:26:29,966           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,966           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,966           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,966           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,966           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,967           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,967                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,967                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,967                 directory, all directories are treated like packages.
2024-03-08T03:26:29,967           ********************************************************************************

2024-03-08T03:26:29,968   !!
2024-03-08T03:26:29,968     check.warn(importable)
2024-03-08T03:26:29,968   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-03-08T03:26:29,968   !!

2024-03-08T03:26:29,968           ********************************************************************************
2024-03-08T03:26:29,968           ############################
2024-03-08T03:26:29,968           # Package would be ignored #
2024-03-08T03:26:29,968           ############################
2024-03-08T03:26:29,969           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-03-08T03:26:29,969           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,969           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,969           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-03-08T03:26:29,969           to the `packages` configuration field.

2024-03-08T03:26:29,969           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,969           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,970           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,970           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,970           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,970           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-03-08T03:26:29,970           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-03-08T03:26:29,970           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,971           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,971           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,971           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,971           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,972           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,972                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,972                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,972                 directory, all directories are treated like packages.
2024-03-08T03:26:29,972           ********************************************************************************

2024-03-08T03:26:29,973   !!
2024-03-08T03:26:29,973     check.warn(importable)
2024-03-08T03:26:29,973   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-03-08T03:26:29,973   !!

2024-03-08T03:26:29,973           ********************************************************************************
2024-03-08T03:26:29,973           ############################
2024-03-08T03:26:29,974           # Package would be ignored #
2024-03-08T03:26:29,974           ############################
2024-03-08T03:26:29,974           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-03-08T03:26:29,974           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,974           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,974           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-03-08T03:26:29,975           to the `packages` configuration field.

2024-03-08T03:26:29,975           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,975           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,975           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,975           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,976           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,976           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-03-08T03:26:29,976           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-03-08T03:26:29,976           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,976           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,976           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,977           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,977           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,978           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,978                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,978                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,978                 directory, all directories are treated like packages.
2024-03-08T03:26:29,978           ********************************************************************************

2024-03-08T03:26:29,979   !!
2024-03-08T03:26:29,979     check.warn(importable)
2024-03-08T03:26:29,979   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-03-08T03:26:29,979   !!

2024-03-08T03:26:29,979           ********************************************************************************
2024-03-08T03:26:29,980           ############################
2024-03-08T03:26:29,980           # Package would be ignored #
2024-03-08T03:26:29,980           ############################
2024-03-08T03:26:29,980           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-03-08T03:26:29,980           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,980           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,981           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-03-08T03:26:29,981           to the `packages` configuration field.

2024-03-08T03:26:29,981           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,981           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,981           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,982           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,982           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,982           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-03-08T03:26:29,982           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-03-08T03:26:29,982           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,983           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,983           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,983           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,983           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,984           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,984                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,984                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,984                 directory, all directories are treated like packages.
2024-03-08T03:26:29,984           ********************************************************************************

2024-03-08T03:26:29,984   !!
2024-03-08T03:26:29,984     check.warn(importable)
2024-03-08T03:26:29,984   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-03-08T03:26:29,985   !!

2024-03-08T03:26:29,985           ********************************************************************************
2024-03-08T03:26:29,985           ############################
2024-03-08T03:26:29,985           # Package would be ignored #
2024-03-08T03:26:29,985           ############################
2024-03-08T03:26:29,985           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-03-08T03:26:29,985           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,986           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,986           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-03-08T03:26:29,986           to the `packages` configuration field.

2024-03-08T03:26:29,986           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,986           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,986           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,986           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:29,987           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:29,987           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-03-08T03:26:29,987           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-03-08T03:26:29,987           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:29,988           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:29,988           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:29,989           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:29,990           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:29,990           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:29,990                 even if it does not contain any `.py` files.
2024-03-08T03:26:29,990                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:29,990                 directory, all directories are treated like packages.
2024-03-08T03:26:29,991           ********************************************************************************

2024-03-08T03:26:29,991   !!
2024-03-08T03:26:29,991     check.warn(importable)
2024-03-08T03:26:29,991   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-03-08T03:26:29,992   !!

2024-03-08T03:26:29,996           ********************************************************************************
2024-03-08T03:26:29,996           ############################
2024-03-08T03:26:29,997           # Package would be ignored #
2024-03-08T03:26:29,997           ############################
2024-03-08T03:26:29,997           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-03-08T03:26:29,997           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:29,997           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:29,997           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-03-08T03:26:29,998           to the `packages` configuration field.

2024-03-08T03:26:29,998           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:29,998           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:29,998           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:29,998           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,003           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,003           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-03-08T03:26:30,003           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-03-08T03:26:30,004           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,004           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,004           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,004           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,004           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,005           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,005                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,005                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,005                 directory, all directories are treated like packages.
2024-03-08T03:26:30,005           ********************************************************************************

2024-03-08T03:26:30,005   !!
2024-03-08T03:26:30,005     check.warn(importable)
2024-03-08T03:26:30,006   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-03-08T03:26:30,006   !!

2024-03-08T03:26:30,006           ********************************************************************************
2024-03-08T03:26:30,006           ############################
2024-03-08T03:26:30,006           # Package would be ignored #
2024-03-08T03:26:30,006           ############################
2024-03-08T03:26:30,007           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-03-08T03:26:30,007           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,007           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,007           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-03-08T03:26:30,007           to the `packages` configuration field.

2024-03-08T03:26:30,007           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,008           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,008           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,008           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,008           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,008           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-03-08T03:26:30,009           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-03-08T03:26:30,009           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,009           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,009           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,009           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,009           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,010           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,010                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,010                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,010                 directory, all directories are treated like packages.
2024-03-08T03:26:30,010           ********************************************************************************

2024-03-08T03:26:30,010   !!
2024-03-08T03:26:30,011     check.warn(importable)
2024-03-08T03:26:30,011   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-03-08T03:26:30,011   !!

2024-03-08T03:26:30,011           ********************************************************************************
2024-03-08T03:26:30,011           ############################
2024-03-08T03:26:30,011           # Package would be ignored #
2024-03-08T03:26:30,011           ############################
2024-03-08T03:26:30,012           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-03-08T03:26:30,012           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,012           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,012           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-03-08T03:26:30,012           to the `packages` configuration field.

2024-03-08T03:26:30,012           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,013           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,013           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,013           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,013           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,013           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-03-08T03:26:30,014           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-03-08T03:26:30,014           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,014           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,014           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,014           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,014           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,015           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,015                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,015                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,015                 directory, all directories are treated like packages.
2024-03-08T03:26:30,015           ********************************************************************************

2024-03-08T03:26:30,015   !!
2024-03-08T03:26:30,016     check.warn(importable)
2024-03-08T03:26:30,016   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-03-08T03:26:30,016   !!

2024-03-08T03:26:30,016           ********************************************************************************
2024-03-08T03:26:30,016           ############################
2024-03-08T03:26:30,017           # Package would be ignored #
2024-03-08T03:26:30,017           ############################
2024-03-08T03:26:30,017           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-03-08T03:26:30,017           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,017           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,017           package, please make sure that 'moleculekit.share' is explicitly added
2024-03-08T03:26:30,018           to the `packages` configuration field.

2024-03-08T03:26:30,018           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,018           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,018           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,018           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,019           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,019           If you don't want 'moleculekit.share' to be distributed and are
2024-03-08T03:26:30,019           already explicitly excluding 'moleculekit.share' via
2024-03-08T03:26:30,019           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,019           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,019           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,020           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,020           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,021           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,021                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,021                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,022                 directory, all directories are treated like packages.
2024-03-08T03:26:30,022           ********************************************************************************

2024-03-08T03:26:30,022   !!
2024-03-08T03:26:30,023     check.warn(importable)
2024-03-08T03:26:30,023   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-03-08T03:26:30,023   !!

2024-03-08T03:26:30,023           ********************************************************************************
2024-03-08T03:26:30,023           ############################
2024-03-08T03:26:30,024           # Package would be ignored #
2024-03-08T03:26:30,024           ############################
2024-03-08T03:26:30,024           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-03-08T03:26:30,024           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,024           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,024           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-03-08T03:26:30,024           to the `packages` configuration field.

2024-03-08T03:26:30,025           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,025           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,025           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,025           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,025           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,026           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-03-08T03:26:30,026           already explicitly excluding 'moleculekit.share.atomselect' via
2024-03-08T03:26:30,026           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,026           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,026           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,026           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,027           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,027           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,027                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,027                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,027                 directory, all directories are treated like packages.
2024-03-08T03:26:30,027           ********************************************************************************

2024-03-08T03:26:30,028   !!
2024-03-08T03:26:30,028     check.warn(importable)
2024-03-08T03:26:30,028   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-03-08T03:26:30,028   !!

2024-03-08T03:26:30,028           ********************************************************************************
2024-03-08T03:26:30,028           ############################
2024-03-08T03:26:30,028           # Package would be ignored #
2024-03-08T03:26:30,029           ############################
2024-03-08T03:26:30,029           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-03-08T03:26:30,029           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,029           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,029           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-03-08T03:26:30,029           to the `packages` configuration field.

2024-03-08T03:26:30,030           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,030           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,030           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,030           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,030           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,031           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-03-08T03:26:30,031           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-03-08T03:26:30,031           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,031           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,031           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,031           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,032           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,032           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,032                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,032                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,032                 directory, all directories are treated like packages.
2024-03-08T03:26:30,032           ********************************************************************************

2024-03-08T03:26:30,033   !!
2024-03-08T03:26:30,033     check.warn(importable)
2024-03-08T03:26:30,033   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-03-08T03:26:30,033   !!

2024-03-08T03:26:30,033           ********************************************************************************
2024-03-08T03:26:30,033           ############################
2024-03-08T03:26:30,034           # Package would be ignored #
2024-03-08T03:26:30,034           ############################
2024-03-08T03:26:30,034           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-03-08T03:26:30,034           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,034           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,034           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-03-08T03:26:30,034           to the `packages` configuration field.

2024-03-08T03:26:30,035           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,035           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,035           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,035           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,035           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,036           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-03-08T03:26:30,036           already explicitly excluding 'moleculekit.tmalign' via
2024-03-08T03:26:30,036           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,036           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,036           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,036           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,037           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,037           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,037                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,037                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,037                 directory, all directories are treated like packages.
2024-03-08T03:26:30,037           ********************************************************************************

2024-03-08T03:26:30,038   !!
2024-03-08T03:26:30,038     check.warn(importable)
2024-03-08T03:26:30,038   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-03-08T03:26:30,038   !!

2024-03-08T03:26:30,038           ********************************************************************************
2024-03-08T03:26:30,038           ############################
2024-03-08T03:26:30,038           # Package would be ignored #
2024-03-08T03:26:30,038           ############################
2024-03-08T03:26:30,039           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-03-08T03:26:30,039           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,039           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,039           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-03-08T03:26:30,039           to the `packages` configuration field.

2024-03-08T03:26:30,039           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,040           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,040           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,040           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,040           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,041           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-03-08T03:26:30,041           already explicitly excluding 'moleculekit.tmalign.include' via
2024-03-08T03:26:30,041           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,041           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,041           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,041           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,042           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,042           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,042                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,042                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,042                 directory, all directories are treated like packages.
2024-03-08T03:26:30,043           ********************************************************************************

2024-03-08T03:26:30,043   !!
2024-03-08T03:26:30,043     check.warn(importable)
2024-03-08T03:26:30,043   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-03-08T03:26:30,043   !!

2024-03-08T03:26:30,043           ********************************************************************************
2024-03-08T03:26:30,044           ############################
2024-03-08T03:26:30,044           # Package would be ignored #
2024-03-08T03:26:30,044           ############################
2024-03-08T03:26:30,044           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-03-08T03:26:30,044           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,044           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,044           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-03-08T03:26:30,045           to the `packages` configuration field.

2024-03-08T03:26:30,045           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,045           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,045           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,045           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,045           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,046           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-03-08T03:26:30,046           already explicitly excluding 'moleculekit.tmalign.src' via
2024-03-08T03:26:30,046           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,046           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,046           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,046           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,047           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,047           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,047                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,047                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,047                 directory, all directories are treated like packages.
2024-03-08T03:26:30,048           ********************************************************************************

2024-03-08T03:26:30,048   !!
2024-03-08T03:26:30,048     check.warn(importable)
2024-03-08T03:26:30,048   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-03-08T03:26:30,048   !!

2024-03-08T03:26:30,048           ********************************************************************************
2024-03-08T03:26:30,049           ############################
2024-03-08T03:26:30,049           # Package would be ignored #
2024-03-08T03:26:30,049           ############################
2024-03-08T03:26:30,049           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-03-08T03:26:30,049           but it is absent from setuptools' `packages` configuration.

2024-03-08T03:26:30,049           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-08T03:26:30,049           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-03-08T03:26:30,049           to the `packages` configuration field.

2024-03-08T03:26:30,050           Alternatively, you can also rely on setuptools' discovery methods
2024-03-08T03:26:30,050           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-08T03:26:30,050           instead of `find_packages(...)`/`find:`).

2024-03-08T03:26:30,050           You can read more about "package discovery" on setuptools documentation page:

2024-03-08T03:26:30,050           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-08T03:26:30,051           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-03-08T03:26:30,051           already explicitly excluding 'moleculekit.wrapping' via
2024-03-08T03:26:30,051           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-08T03:26:30,051           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-08T03:26:30,051           combination with a more fine grained `package-data` configuration.

2024-03-08T03:26:30,052           You can read more about "package data files" on setuptools documentation page:

2024-03-08T03:26:30,052           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-08T03:26:30,053           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-08T03:26:30,053                 even if it does not contain any `.py` files.
2024-03-08T03:26:30,053                 On the other hand, currently there is no concept of package data
2024-03-08T03:26:30,053                 directory, all directories are treated like packages.
2024-03-08T03:26:30,053           ********************************************************************************

2024-03-08T03:26:30,054   !!
2024-03-08T03:26:30,054     check.warn(importable)
2024-03-08T03:26:30,054   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:30,054   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:30,054   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-08T03:26:30,054   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-08T03:26:30,055   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-08T03:26:30,055   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-08T03:26:30,055   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-08T03:26:30,055   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-08T03:26:30,055   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-08T03:26:30,055   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-08T03:26:30,057   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-08T03:26:30,060   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-08T03:26:30,060   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-08T03:26:30,081   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-08T03:26:30,083   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-08T03:26:30,084   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-08T03:26:30,086   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-08T03:26:30,089   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-08T03:26:30,627   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-03-08T03:26:30,628   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-03-08T03:26:30,630   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-03-08T03:26:30,631   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,632   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,634   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,636   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,638   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,640   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,641   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,643   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,645   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,647   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,649   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,651   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,653   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,655   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,657   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,659   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,661   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,663   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,665   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,667   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,669   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,671   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,673   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,675   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,677   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,678   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,680   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,682   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,684   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,686   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,688   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,690   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,692   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,694   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,696   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,697   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,699   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,701   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,703   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,705   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,707   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,709   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,711   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,713   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,715   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,717   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,719   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,721   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,723   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,725   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,727   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,729   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,731   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,733   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,735   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,736   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,738   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,740   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,742   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,744   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,746   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,748   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,750   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,752   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,754   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,756   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,758   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,760   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,762   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,764   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,766   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,768   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,770   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,772   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,774   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,776   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,778   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,780   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,782   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,784   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,786   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,788   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,790   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,792   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,794   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,796   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,798   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,800   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,802   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,804   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,806   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,808   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,810   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,812   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,814   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,816   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,818   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,820   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,822   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,823   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,825   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,827   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,829   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,831   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,833   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,835   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,837   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,838   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,840   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,842   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,844   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,846   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,848   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,850   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,852   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,853   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,856   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,857   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,859   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,861   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,863   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,865   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,867   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,869   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,871   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,873   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,875   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,877   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,879   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,881   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,883   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,884   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,886   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,888   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,890   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,892   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,894   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,896   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,898   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,899   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,901   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,903   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,905   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,907   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,909   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,910   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,912   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,914   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,916   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,918   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,920   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,922   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,924   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,926   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,928   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,930   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,932   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,934   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,936   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,937   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,939   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,941   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,943   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,945   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,947   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,949   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,951   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,953   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,955   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,956   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,958   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,960   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,962   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,964   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,966   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,968   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-08T03:26:30,969   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-08T03:26:30,970   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-08T03:26:30,997   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-08T03:26:30,999   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-08T03:26:31,001   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-03-08T03:26:31,002   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-03-08T03:26:31,004   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-08T03:26:31,005   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-08T03:26:31,012   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-08T03:26:31,012   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-08T03:26:31,041   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-08T03:26:31,043   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-08T03:26:31,044   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-08T03:26:31,072   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-08T03:26:31,074   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-08T03:26:31,075   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-08T03:26:31,094   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-08T03:26:31,096   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-08T03:26:31,097   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-08T03:26:31,117   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-08T03:26:31,119   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-08T03:26:31,120   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-08T03:26:31,140   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-08T03:26:31,142   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-08T03:26:31,143   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-08T03:26:31,159   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-08T03:26:31,162   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-08T03:26:31,164   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-08T03:26:31,165   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-08T03:26:31,167   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-08T03:26:31,168   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-08T03:26:31,171   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-08T03:26:31,172   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-08T03:26:31,175   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-08T03:26:31,175   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-08T03:26:31,189   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-08T03:26:31,192   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-08T03:26:31,194   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-08T03:26:31,195   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-08T03:26:31,197   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-08T03:26:31,199   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-08T03:26:31,202   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-08T03:26:31,204   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-08T03:26:31,207   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-08T03:26:31,208   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-08T03:26:31,211   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,212   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,234   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,237   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,239   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,240   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,260   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,262   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:26:31,264   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,265   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,267   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,268   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,272   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,274   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,276   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-08T03:26:31,278   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:26:31,279   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:26:31,281   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:26:31,284   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:26:31,287   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:26:31,289   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:26:31,302   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-03-08T03:26:31,303   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.18'
2024-03-08T03:26:31,303   running build_ext
2024-03-08T03:26:31,314   building 'moleculekit.interactions.hbonds' extension
2024-03-08T03:26:31,314   creating build/temp.linux-armv7l-cpython-39
2024-03-08T03:26:31,315   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-03-08T03:26:31,315   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-08T03:26:31,316   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-08T03:26:31,317   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-03-08T03:26:31,582   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:26:31,583                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:26:31,583                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:26:31,583                    from moleculekit/interactions/hbonds/hbonds.cpp:1235:
2024-03-08T03:26:31,583   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:26:31,583      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:26:31,583         |  ^~~~~~~
2024-03-08T03:26:57,719   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:26:58,034   building 'moleculekit.interactions.pipi' extension
2024-03-08T03:26:58,034   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-08T03:26:58,035   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-03-08T03:26:58,263   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:26:58,263                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:26:58,263                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:26:58,263                    from moleculekit/interactions/pipi/pipi.cpp:1235:
2024-03-08T03:26:58,263   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:26:58,263      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:26:58,264         |  ^~~~~~~
2024-03-08T03:27:26,413   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:27:26,734   building 'moleculekit.interactions.cationpi' extension
2024-03-08T03:27:26,734   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-08T03:27:26,735   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-03-08T03:27:26,998   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:27:26,999                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:27:26,999                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:27:26,999                    from moleculekit/interactions/cationpi/cationpi.cpp:1235:
2024-03-08T03:27:26,999   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:27:26,999      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:27:26,999         |  ^~~~~~~
2024-03-08T03:27:55,006   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:27:55,322   building 'moleculekit.interactions.sigmahole' extension
2024-03-08T03:27:55,323   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-08T03:27:55,323   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-03-08T03:27:55,557   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:27:55,558                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:27:55,558                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:27:55,558                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1235:
2024-03-08T03:27:55,558   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:27:55,558      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:27:55,558         |  ^~~~~~~
2024-03-08T03:28:22,973   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:28:23,291   building 'moleculekit.wrapping' extension
2024-03-08T03:28:23,292   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-08T03:28:23,293   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-03-08T03:28:23,523   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:28:23,523                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:28:23,524                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:28:23,524                    from moleculekit/wrapping/wrapping.cpp:1235:
2024-03-08T03:28:23,524   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:28:23,524      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:28:23,524         |  ^~~~~~~
2024-03-08T03:28:49,442   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:28:49,667   building 'moleculekit.bondguesser_utils' extension
2024-03-08T03:28:49,668   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-08T03:28:49,669   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-03-08T03:28:49,899   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:28:49,899                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:28:49,899                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:28:49,899                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1235:
2024-03-08T03:28:49,899   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:28:49,899      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:28:49,900         |  ^~~~~~~
2024-03-08T03:28:51,437   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-03-08T03:28:51,437   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-08T03:28:51,437   19771 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-08T03:28:51,437         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-08T03:28:51,438   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-08T03:28:51,438   19783 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-08T03:28:51,438         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-08T03:28:51,439   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-08T03:28:51,439   19795 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-03-08T03:28:51,439         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-03-08T03:28:51,440   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19834:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,440   19834 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-08T03:28:51,440         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,441   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19873:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,441   19873 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-08T03:28:51,441         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,442   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19912:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,442   19912 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,442         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,443   19951 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-08T03:28:51,443         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,444   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19957:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,444   19957 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-08T03:28:51,444         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,445   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19998:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,445   19998 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-08T03:28:51,445         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,445   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20004:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,446   20004 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,446         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,446   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20045:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,447   20045 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-08T03:28:51,447         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,447   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20051:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,447   20051 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,448         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,448   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20092:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,449   20092 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-08T03:28:51,449         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,450   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20145:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,450   20145 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,450         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20192:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,451   20192 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,451         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,452   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,452   20233 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-08T03:28:51,452         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,453   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20239:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,453   20239 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-08T03:28:51,453         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,453   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,453   20245 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,454         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,454   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20292:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,455   20292 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-08T03:28:51,455         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,455   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20298:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,455   20298 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,455         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,456   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,456   20339 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-08T03:28:51,456         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,457   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,457   20351 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,457         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,458   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20404:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-08T03:28:51,458   20404 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-08T03:28:51,459         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,478   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-03-08T03:28:51,478   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21026:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-08T03:28:51,478   21026 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-03-08T03:28:51,479         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-03-08T03:28:51,479   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21063:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-08T03:28:51,479   21063 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-03-08T03:28:51,479         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-08T03:29:14,572   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:29:14,868   building 'moleculekit.atomselect_utils' extension
2024-03-08T03:29:14,869   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-08T03:29:14,870   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-03-08T03:29:15,110   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:29:15,110                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:29:15,110                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:29:15,110                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1252:
2024-03-08T03:29:15,110   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:29:15,110      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:29:15,111         |  ^~~~~~~
2024-03-08T03:29:16,829   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-03-08T03:29:16,830   moleculekit/atomselect_utils/atomselect_utils.cpp:23205:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-08T03:29:16,830   23205 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-03-08T03:29:16,830         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-08T03:29:16,836   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-08T03:29:16,836   moleculekit/atomselect_utils/atomselect_utils.cpp:23457:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-08T03:29:16,836   23457 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-08T03:29:16,836         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-08T03:29:16,842   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-08T03:29:16,842   moleculekit/atomselect_utils/atomselect_utils.cpp:23724:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-08T03:29:16,842   23724 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-08T03:29:16,842         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-08T03:29:46,636   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:29:46,965   building 'moleculekit.distance_utils' extension
2024-03-08T03:29:46,966   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-08T03:29:46,966   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-03-08T03:29:47,196   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:29:47,197                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:29:47,197                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:29:47,197                    from moleculekit/distance_utils/distance_utils.cpp:1235:
2024-03-08T03:29:47,197   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:29:47,197      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:29:47,197         |  ^~~~~~~
2024-03-08T03:30:23,455   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:30:23,833   building 'moleculekit.occupancy_utils' extension
2024-03-08T03:30:23,834   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-08T03:30:23,834   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-03-08T03:30:24,089   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:30:24,089                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:30:24,090                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:30:24,090                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1235:
2024-03-08T03:30:24,090   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:30:24,090      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:30:24,090         |  ^~~~~~~
2024-03-08T03:30:47,225   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:30:47,443   building 'moleculekit.xtc' extension
2024-03-08T03:30:47,444   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-08T03:30:47,445   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-08T03:30:47,445   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-08T03:30:47,446   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-08T03:30:47,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,683      66 |  "OK",
2024-03-08T03:30:47,684         |  ^~~~
2024-03-08T03:30:47,684   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,684      67 |  "Header",
2024-03-08T03:30:47,684         |  ^~~~~~~~
2024-03-08T03:30:47,684   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,684      68 |  "String",
2024-03-08T03:30:47,685         |  ^~~~~~~~
2024-03-08T03:30:47,685   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,685      69 |  "Double",
2024-03-08T03:30:47,685         |  ^~~~~~~~
2024-03-08T03:30:47,685   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,685      70 |  "Integer",
2024-03-08T03:30:47,685         |  ^~~~~~~~~
2024-03-08T03:30:47,686   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,686      71 |  "Float",
2024-03-08T03:30:47,686         |  ^~~~~~~
2024-03-08T03:30:47,686   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,686      72 |  "Unsigned integer",
2024-03-08T03:30:47,686         |  ^~~~~~~~~~~~~~~~~~
2024-03-08T03:30:47,686   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,686      73 |  "Compressed 3D coordinate",
2024-03-08T03:30:47,687         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:30:47,687   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,687      74 |  "Closing file",
2024-03-08T03:30:47,687         |  ^~~~~~~~~~~~~~
2024-03-08T03:30:47,687   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,687      75 |  "Magic number",
2024-03-08T03:30:47,687         |  ^~~~~~~~~~~~~~
2024-03-08T03:30:47,688   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,688      76 |  "Not enough memory",
2024-03-08T03:30:47,688         |  ^~~~~~~~~~~~~~~~~~~
2024-03-08T03:30:47,688   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,688      77 |  "End of file",
2024-03-08T03:30:47,688         |  ^~~~~~~~~~~~~
2024-03-08T03:30:47,688   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:30:47,689      78 |  "File not found"
2024-03-08T03:30:47,689         |  ^~~~~~~~~~~~~~~~
2024-03-08T03:30:47,693   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-08T03:30:47,693   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,693     459 |     while (size >= num && num_of_bits < 32)
2024-03-08T03:30:47,693         |            ~~~~~^~~~~~
2024-03-08T03:30:47,693   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-08T03:30:47,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,694     505 |     while (bytes[num_of_bytes] >= num)
2024-03-08T03:30:47,694         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-08T03:30:47,696   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-08T03:30:47,696   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,696     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-08T03:30:47,696         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-08T03:30:47,697   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,697     616 |   for (i = 0; i < num_of_bytes; i++)
2024-03-08T03:30:47,697         |               ~~^~~~~~~~~~~~~~
2024-03-08T03:30:47,697   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,697     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-03-08T03:30:47,697         |               ~~^~~~~~~~~~~~~~~~
2024-03-08T03:30:47,697   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-08T03:30:47,698   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,698     664 |   if (lastbits < num_of_bits)
2024-03-08T03:30:47,698         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-03-08T03:30:47,701   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-08T03:30:47,701   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,701     785 |  if(size3>xfp->buf1size)
2024-03-08T03:30:47,702         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:30:47,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,703     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:30:47,703         |                   ^
2024-03-08T03:30:47,706   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,706     932 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:30:47,706         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:30:47,706   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,706     935 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:30:47,706         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:30:47,706   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,707     938 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:30:47,707         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:30:47,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,707     945 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:30:47,707         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:30:47,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,707     948 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:30:47,708         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:30:47,708   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,708     951 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:30:47,708         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:30:47,708   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:30:47,708     756 |  int smallidx,  minidx, maxidx;
2024-03-08T03:30:47,708         |                 ^~~~~~
2024-03-08T03:30:47,708   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:30:47,709     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-08T03:30:47,709         |                         ^~~~~~
2024-03-08T03:30:47,709   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-08T03:30:47,709     763 |  int errval=1;
2024-03-08T03:30:47,709         |      ^~~~~~
2024-03-08T03:30:47,710   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-08T03:30:47,710   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,710    1011 |  if(size3>xfp->buf1size)
2024-03-08T03:30:47,710         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:30:47,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,712    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-03-08T03:30:47,712         |                     ~~~~~~~~^~~~~~~
2024-03-08T03:30:47,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,713    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-08T03:30:47,713         |                    ~~~~~~~~^~~~~~~
2024-03-08T03:30:47,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,713    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-08T03:30:47,714         |                    ~~~~~~~~^~~~~~~
2024-03-08T03:30:47,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,715    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-08T03:30:47,715         |                  ^
2024-03-08T03:30:47,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,715    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:30:47,716         |                   ^
2024-03-08T03:30:47,719   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,719    1275 |  if(tmp==(unsigned int)buf2[0])
2024-03-08T03:30:47,719         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:30:47,720   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:30:47,720    1001 |  int errval;
2024-03-08T03:30:47,720         |      ^~~~~~
2024-03-08T03:30:47,722   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-08T03:30:47,722   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,723    1316 |  if(size3>xfp->buf1size)
2024-03-08T03:30:47,723         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:30:47,724   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,724    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:30:47,725         |                   ^
2024-03-08T03:30:47,727   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:30:47,727    1289 |  int smallidx,  maxidx, minidx;
2024-03-08T03:30:47,727         |                         ^~~~~~
2024-03-08T03:30:47,728   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:30:47,728    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-08T03:30:47,728         |                         ^~~~~~
2024-03-08T03:30:47,728   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-08T03:30:47,728    1297 |  int errval=1;
2024-03-08T03:30:47,728         |      ^~~~~~
2024-03-08T03:30:47,729   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-08T03:30:47,729   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,730    1513 |  if(size3>xfp->buf1size) {
2024-03-08T03:30:47,730         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:30:47,734   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,734    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-08T03:30:47,734         |                  ^
2024-03-08T03:30:47,734   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:47,734    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:30:47,734         |                   ^
2024-03-08T03:30:47,738   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:30:47,738    1743 |  if(tmp==(unsigned int)buf2[0])
2024-03-08T03:30:47,738         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:30:47,738   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:30:47,738    1504 |  int errval=1;
2024-03-08T03:30:47,739         |      ^~~~~~
2024-03-08T03:30:49,964   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-03-08T03:30:50,216   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-03-08T03:30:50,822   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-03-08T03:30:50,823   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:50,823     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-03-08T03:30:50,823         |                  ~~~~~^~~~~~~~
2024-03-08T03:30:50,823   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-08T03:30:50,823     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-03-08T03:30:50,824         |      ^~~
2024-03-08T03:30:50,830   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-03-08T03:30:50,830   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-08T03:30:50,830     418 |  int nf3 = nframes * 3;
2024-03-08T03:30:50,830         |      ^~~
2024-03-08T03:30:50,832   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-03-08T03:30:50,832   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:50,833     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-03-08T03:30:50,833         |                   ~~~~~^~~~~~~~
2024-03-08T03:30:50,835   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:30:50,835     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-03-08T03:30:50,835         |                   ~~~~~^~~~~~~~
2024-03-08T03:30:50,835   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-03-08T03:30:50,835     491 |  int reading_index = 0;
2024-03-08T03:30:50,836         |      ^~~~~~~~~~~~~
2024-03-08T03:30:50,836   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-03-08T03:30:50,836     492 |  int writing_index = 0;
2024-03-08T03:30:50,836         |      ^~~~~~~~~~~~~
2024-03-08T03:30:51,602   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-03-08T03:30:51,839   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:30:51,840                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:30:51,840                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:30:51,840                    from moleculekit/fileformats/xtc/xtc.cpp:1239:
2024-03-08T03:30:51,840   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:30:51,840      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:30:51,840         |  ^~~~~~~
2024-03-08T03:31:11,810   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:31:12,133   building 'moleculekit.trr' extension
2024-03-08T03:31:12,134   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-03-08T03:31:12,249   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-08T03:31:12,482   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,482      66 |  "OK",
2024-03-08T03:31:12,482         |  ^~~~
2024-03-08T03:31:12,482   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,482      67 |  "Header",
2024-03-08T03:31:12,482         |  ^~~~~~~~
2024-03-08T03:31:12,483   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,483      68 |  "String",
2024-03-08T03:31:12,483         |  ^~~~~~~~
2024-03-08T03:31:12,483   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,483      69 |  "Double",
2024-03-08T03:31:12,483         |  ^~~~~~~~
2024-03-08T03:31:12,483   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,484      70 |  "Integer",
2024-03-08T03:31:12,484         |  ^~~~~~~~~
2024-03-08T03:31:12,484   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,484      71 |  "Float",
2024-03-08T03:31:12,484         |  ^~~~~~~
2024-03-08T03:31:12,484   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,484      72 |  "Unsigned integer",
2024-03-08T03:31:12,485         |  ^~~~~~~~~~~~~~~~~~
2024-03-08T03:31:12,485   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,485      73 |  "Compressed 3D coordinate",
2024-03-08T03:31:12,485         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:12,485   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,485      74 |  "Closing file",
2024-03-08T03:31:12,485         |  ^~~~~~~~~~~~~~
2024-03-08T03:31:12,485   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,486      75 |  "Magic number",
2024-03-08T03:31:12,486         |  ^~~~~~~~~~~~~~
2024-03-08T03:31:12,486   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,486      76 |  "Not enough memory",
2024-03-08T03:31:12,486         |  ^~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:12,486   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,486      77 |  "End of file",
2024-03-08T03:31:12,487         |  ^~~~~~~~~~~~~
2024-03-08T03:31:12,487   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-08T03:31:12,487      78 |  "File not found"
2024-03-08T03:31:12,487         |  ^~~~~~~~~~~~~~~~
2024-03-08T03:31:12,491   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-08T03:31:12,491   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,491     459 |     while (size >= num && num_of_bits < 32)
2024-03-08T03:31:12,491         |            ~~~~~^~~~~~
2024-03-08T03:31:12,492   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-08T03:31:12,492   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,492     505 |     while (bytes[num_of_bytes] >= num)
2024-03-08T03:31:12,492         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-08T03:31:12,494   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-08T03:31:12,494   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,495     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-08T03:31:12,495         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:12,495   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,495     616 |   for (i = 0; i < num_of_bytes; i++)
2024-03-08T03:31:12,495         |               ~~^~~~~~~~~~~~~~
2024-03-08T03:31:12,495   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,495     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-03-08T03:31:12,496         |               ~~^~~~~~~~~~~~~~~~
2024-03-08T03:31:12,496   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-08T03:31:12,496   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,496     664 |   if (lastbits < num_of_bits)
2024-03-08T03:31:12,496         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-03-08T03:31:12,499   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-08T03:31:12,499   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,500     785 |  if(size3>xfp->buf1size)
2024-03-08T03:31:12,500         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:31:12,501   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,501     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:31:12,502         |                   ^
2024-03-08T03:31:12,504   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,504     932 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:31:12,504         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:31:12,504   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,505     935 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:31:12,505         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:31:12,505   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,505     938 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:31:12,505         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:31:12,505   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,505     945 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:31:12,506         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:31:12,506   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,506     948 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:31:12,506         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:31:12,506   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,506     951 |     if(countmjh >= size3 ) { return -1; }
2024-03-08T03:31:12,506         |        ~~~~~~~~~^~~~~~~~
2024-03-08T03:31:12,506   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:31:12,507     756 |  int smallidx,  minidx, maxidx;
2024-03-08T03:31:12,507         |                 ^~~~~~
2024-03-08T03:31:12,507   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:31:12,507     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-08T03:31:12,507         |                         ^~~~~~
2024-03-08T03:31:12,507   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-08T03:31:12,507     763 |  int errval=1;
2024-03-08T03:31:12,507         |      ^~~~~~
2024-03-08T03:31:12,508   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-08T03:31:12,508   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,508    1011 |  if(size3>xfp->buf1size)
2024-03-08T03:31:12,509         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:31:12,510   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,510    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-03-08T03:31:12,511         |                     ~~~~~~~~^~~~~~~
2024-03-08T03:31:12,511   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,511    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-08T03:31:12,511         |                    ~~~~~~~~^~~~~~~
2024-03-08T03:31:12,512   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,512    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-08T03:31:12,512         |                    ~~~~~~~~^~~~~~~
2024-03-08T03:31:12,513   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,513    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-08T03:31:12,514         |                  ^
2024-03-08T03:31:12,514   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,514    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:31:12,514         |                   ^
2024-03-08T03:31:12,517   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,518    1275 |  if(tmp==(unsigned int)buf2[0])
2024-03-08T03:31:12,518         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:12,518   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:31:12,518    1001 |  int errval;
2024-03-08T03:31:12,518         |      ^~~~~~
2024-03-08T03:31:12,521   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-08T03:31:12,521   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,521    1316 |  if(size3>xfp->buf1size)
2024-03-08T03:31:12,521         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:31:12,523   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,523    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:31:12,523         |                   ^
2024-03-08T03:31:12,526   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:31:12,526    1289 |  int smallidx,  maxidx, minidx;
2024-03-08T03:31:12,526         |                         ^~~~~~
2024-03-08T03:31:12,526   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:31:12,526    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-08T03:31:12,526         |                         ^~~~~~
2024-03-08T03:31:12,526   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-08T03:31:12,527    1297 |  int errval=1;
2024-03-08T03:31:12,527         |      ^~~~~~
2024-03-08T03:31:12,528   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-08T03:31:12,528   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,528    1513 |  if(size3>xfp->buf1size) {
2024-03-08T03:31:12,528         |     ~~~~~^~~~~~~~~~~~~~
2024-03-08T03:31:12,532   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,532    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-08T03:31:12,533         |                  ^
2024-03-08T03:31:12,533   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:31:12,533    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-08T03:31:12,533         |                   ^
2024-03-08T03:31:12,536   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:31:12,537    1743 |  if(tmp==(unsigned int)buf2[0])
2024-03-08T03:31:12,537         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:12,537   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-08T03:31:12,537    1504 |  int errval=1;
2024-03-08T03:31:12,537         |      ^~~~~~
2024-03-08T03:31:14,772   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-03-08T03:31:14,867   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-03-08T03:31:14,867   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-08T03:31:14,868     111 |         if (slen != strlen(version)+1)
2024-03-08T03:31:14,868         |                  ^~
2024-03-08T03:31:14,868   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-08T03:31:14,868     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-03-08T03:31:14,868         |                                              ^~
2024-03-08T03:31:15,429   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-03-08T03:31:15,744   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:31:15,744                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:31:15,745                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:31:15,745                    from moleculekit/fileformats/xtc/trr.c:1231:
2024-03-08T03:31:15,745   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:31:15,745      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:31:15,745         |  ^~~~~~~
2024-03-08T03:31:16,365   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-03-08T03:31:16,374   moleculekit/fileformats/xtc/trr.c:16322:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-08T03:31:16,374   16322 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-03-08T03:31:16,375         |                                     ^~
2024-03-08T03:31:36,683   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-03-08T03:31:36,684   moleculekit/fileformats/xtc/trr.c:1133:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:36,684    1133 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-08T03:31:36,684         |                                        ^~~~~~~~~~~~~~~
2024-03-08T03:31:36,693   moleculekit/fileformats/xtc/trr.c:14230:7: note: ‘__pyx_v_status’ was declared here
2024-03-08T03:31:36,693   14230 |   int __pyx_v_status;
2024-03-08T03:31:36,693         |       ^~~~~~~~~~~~~~
2024-03-08T03:31:46,988   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-03-08T03:31:46,995   moleculekit/fileformats/xtc/trr.c:11529:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:46,996   11529 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-08T03:31:46,996         |                   ^
2024-03-08T03:31:47,003   moleculekit/fileformats/xtc/trr.c:11525:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,003   11525 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-08T03:31:47,003         |                   ^
2024-03-08T03:31:47,005   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,005    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-08T03:31:47,005         |                                                                                               ^
2024-03-08T03:31:47,011   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-03-08T03:31:47,011   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-08T03:31:47,011         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:47,018   moleculekit/fileformats/xtc/trr.c:11519:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,018   11519 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-03-08T03:31:47,018         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-08T03:31:47,025   moleculekit/fileformats/xtc/trr.c:11472:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,025   11472 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-08T03:31:47,025         |                   ^
2024-03-08T03:31:47,033   moleculekit/fileformats/xtc/trr.c:11468:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,033   11468 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-08T03:31:47,033         |                   ^
2024-03-08T03:31:47,034   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,035    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-08T03:31:47,035         |                                                                                               ^
2024-03-08T03:31:47,040   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-03-08T03:31:47,041   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-08T03:31:47,041         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-08T03:31:47,047   moleculekit/fileformats/xtc/trr.c:11462:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,047   11462 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-03-08T03:31:47,047         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-08T03:31:47,054   moleculekit/fileformats/xtc/trr.c:11861:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,054   11861 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-08T03:31:47,054         |                 ^
2024-03-08T03:31:47,061   moleculekit/fileformats/xtc/trr.c:11857:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,062   11857 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-08T03:31:47,062         |                 ^
2024-03-08T03:31:47,069   moleculekit/fileformats/xtc/trr.c:11702:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,069   11702 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-08T03:31:47,069         |                   ^
2024-03-08T03:31:47,077   moleculekit/fileformats/xtc/trr.c:11698:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,077   11698 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-08T03:31:47,077         |                   ^
2024-03-08T03:31:47,083   moleculekit/fileformats/xtc/trr.c:11754:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,083   11754 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-08T03:31:47,083         |                   ^
2024-03-08T03:31:47,091   moleculekit/fileformats/xtc/trr.c:11750:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:31:47,091   11750 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-08T03:31:47,091         |                   ^
2024-03-08T03:31:56,604   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:31:56,875   building 'moleculekit.dcd' extension
2024-03-08T03:31:56,876   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-08T03:31:56,877   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-08T03:31:56,878   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-03-08T03:31:57,455   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:31:57,455                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:31:57,456                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:31:57,456                    from moleculekit/fileformats/dcd/dcd.c:1226:
2024-03-08T03:31:57,456   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:31:57,456      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:31:57,456         |  ^~~~~~~
2024-03-08T03:31:58,524   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-03-08T03:31:58,524                    from moleculekit/fileformats/dcd/dcd.c:1232:
2024-03-08T03:31:58,524   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,524     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-08T03:31:58,525         |            ^~~~~~~~~~~~~
2024-03-08T03:31:58,525   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,525     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-08T03:31:58,525         |            ^~~~~~~~~~~~~~
2024-03-08T03:31:58,525   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,525     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-03-08T03:31:58,525         |            ^~~~~~~~~~~~~~~
2024-03-08T03:31:58,526   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,526     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-03-08T03:31:58,526         |                   ^~~~~~~~~
2024-03-08T03:31:58,526   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,526     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-03-08T03:31:58,526         |                   ^~~~~~~~~
2024-03-08T03:31:58,526   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,526     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-03-08T03:31:58,527         |                   ^~~~~~~~~
2024-03-08T03:31:58,527   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,527     394 | static int fio_fclose(fio_fd fd) {
2024-03-08T03:31:58,527         |            ^~~~~~~~~~
2024-03-08T03:31:58,527   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-03-08T03:31:58,527     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-03-08T03:31:58,527         |            ^~~~~~~~
2024-03-08T03:32:11,123   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-03-08T03:32:11,123   moleculekit/fileformats/dcd/dcd.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:32:11,124    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-08T03:32:11,124         |                                        ^~~~~~~~~~~~~~~
2024-03-08T03:32:11,128   moleculekit/fileformats/dcd/dcd.c:7992:7: note: ‘__pyx_v_i’ was declared here
2024-03-08T03:32:11,128    7992 |   int __pyx_v_i;
2024-03-08T03:32:11,129         |       ^~~~~~~~~
2024-03-08T03:32:14,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-03-08T03:32:14,510   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-03-08T03:32:14,510   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:32:14,511     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-08T03:32:14,511         |                                                       ^~
2024-03-08T03:32:14,511   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:32:14,511     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-08T03:32:14,511         |                                                      ^~
2024-03-08T03:32:14,511   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:32:14,512     194 |     if (input_integer[0] != dcdcordmagic)
2024-03-08T03:32:14,512         |                          ^~
2024-03-08T03:32:14,515   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:32:14,515     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-08T03:32:14,515         |                                               ^~
2024-03-08T03:32:14,515   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-08T03:32:14,515     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-08T03:32:14,515         |                                               ^~
2024-03-08T03:32:14,519   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-03-08T03:32:14,519   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:32:14,519     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-03-08T03:32:14,519         |                       ^~
2024-03-08T03:32:14,520   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-08T03:32:14,520     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-03-08T03:32:14,520         |                                                 ^~
2024-03-08T03:32:14,542   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-03-08T03:32:14,543   At top level:
2024-03-08T03:32:14,543   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-03-08T03:32:14,543      96 | static void swap2_aligned(void *v, long ndata) {
2024-03-08T03:32:14,543         |             ^~~~~~~~~~~~~
2024-03-08T03:32:14,543   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-03-08T03:32:14,543      32 | static void swap2_unaligned(void *v, long ndata) {
2024-03-08T03:32:14,543         |             ^~~~~~~~~~~~~~~
2024-03-08T03:32:14,544   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-03-08T03:32:14,544   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-08T03:32:14,544     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-08T03:32:14,544         |            ^~~~~~~~~~~~~
2024-03-08T03:32:14,544   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-08T03:32:14,544     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-08T03:32:14,544         |            ^~~~~~~~~~~~~~
2024-03-08T03:32:15,642   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:32:15,780   building 'moleculekit.binpos' extension
2024-03-08T03:32:15,782   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-08T03:32:15,782   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-08T03:32:15,783   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-03-08T03:32:16,107   In file included from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-08T03:32:16,107                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-08T03:32:16,107                    from /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-08T03:32:16,107                    from moleculekit/fileformats/binpos/binpos.c:1226:
2024-03-08T03:32:16,107   /tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-08T03:32:16,108      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-08T03:32:16,108         |  ^~~~~~~
2024-03-08T03:32:29,493   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-03-08T03:32:29,498   moleculekit/fileformats/binpos/binpos.c:8015:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:32:29,498    8015 |   if (__pyx_t_1) {
2024-03-08T03:32:29,498         |      ^
2024-03-08T03:32:29,503   moleculekit/fileformats/binpos/binpos.c:7492:7: note: ‘__pyx_v_status’ was declared here
2024-03-08T03:32:29,503    7492 |   int __pyx_v_status;
2024-03-08T03:32:29,503         |       ^~~~~~~~~~~~~~
2024-03-08T03:32:29,504   moleculekit/fileformats/binpos/binpos.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-08T03:32:29,504    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-08T03:32:29,504         |                                        ^~~~~~~~~~~~~~~
2024-03-08T03:32:29,508   moleculekit/fileformats/binpos/binpos.c:7489:7: note: ‘__pyx_v_i’ was declared here
2024-03-08T03:32:29,509    7489 |   int __pyx_v_i;
2024-03-08T03:32:29,509         |       ^~~~~~~~~
2024-03-08T03:32:31,863   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-03-08T03:32:32,159   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:32:32,299   building 'moleculekit.tmalign' extension
2024-03-08T03:32:32,300   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-08T03:32:32,300   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-08T03:32:32,301   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-03-08T03:33:03,734   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-qogt3a7e/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-03-08T03:33:22,280   In file included from /usr/include/c++/10/vector:72,
2024-03-08T03:33:22,280                    from moleculekit/tmalign/tmalign_util.cpp:1250:
2024-03-08T03:33:22,281   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-03-08T03:33:22,281   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-03-08T03:33:22,281     426 |       vector<_Tp, _Alloc>::
2024-03-08T03:33:22,281         |       ^~~~~~~~~~~~~~~~~~~
2024-03-08T03:33:22,864   In file included from /usr/include/c++/10/vector:67,
2024-03-08T03:33:22,864                    from moleculekit/tmalign/tmalign_util.cpp:1250:
2024-03-08T03:33:22,864   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-08T03:33:22,864   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-08T03:33:22,864    1198 |    _M_realloc_insert(end(), __x);
2024-03-08T03:33:22,864         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-08T03:33:22,865   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-08T03:33:22,865    1198 |    _M_realloc_insert(end(), __x);
2024-03-08T03:33:22,865         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-08T03:33:22,867   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-08T03:33:22,867    1198 |    _M_realloc_insert(end(), __x);
2024-03-08T03:33:22,867         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-08T03:33:25,248   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-03-08T03:33:25,704   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-03-08T03:33:25,705   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.18'
2024-03-08T03:33:25,705   installing to build/bdist.linux-armv7l/wheel
2024-03-08T03:33:25,705   running install
2024-03-08T03:33:25,730   running install_lib
2024-03-08T03:33:25,736   creating build/bdist.linux-armv7l
2024-03-08T03:33:25,737   creating build/bdist.linux-armv7l/wheel
2024-03-08T03:33:25,739   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:25,740   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-08T03:33:25,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-08T03:33:25,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-08T03:33:25,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:25,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:25,788   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:25,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:25,818   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-08T03:33:25,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-08T03:33:25,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-08T03:33:25,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:25,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:25,889   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-08T03:33:25,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-08T03:33:25,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-08T03:33:25,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:25,950   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-08T03:33:25,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-08T03:33:25,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-08T03:33:25,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:25,978   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-08T03:33:25,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-08T03:33:25,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-08T03:33:26,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-08T03:33:26,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,020   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-08T03:33:26,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-08T03:33:26,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-08T03:33:26,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,048   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-08T03:33:26,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-08T03:33:26,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-08T03:33:26,072   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-08T03:33:26,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-08T03:33:26,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-08T03:33:26,078   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-08T03:33:26,079   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-08T03:33:26,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-08T03:33:26,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-08T03:33:26,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-08T03:33:26,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-08T03:33:26,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-08T03:33:26,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-08T03:33:26,105   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-08T03:33:26,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-08T03:33:26,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-08T03:33:26,109   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-08T03:33:26,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-08T03:33:26,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-08T03:33:26,132   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-08T03:33:26,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-08T03:33:26,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-08T03:33:26,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-08T03:33:26,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-08T03:33:26,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-08T03:33:26,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-08T03:33:26,147   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-08T03:33:26,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-08T03:33:26,151   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,202   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-08T03:33:26,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-08T03:33:26,223   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-08T03:33:26,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-08T03:33:26,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-08T03:33:26,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-08T03:33:26,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-08T03:33:26,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-08T03:33:26,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,246   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-08T03:33:26,247   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-08T03:33:26,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-08T03:33:26,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-08T03:33:26,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-08T03:33:26,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-08T03:33:26,259   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-08T03:33:26,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-08T03:33:26,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-08T03:33:26,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-08T03:33:26,265   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-08T03:33:26,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-08T03:33:26,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-08T03:33:26,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-08T03:33:26,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-08T03:33:26,274   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-08T03:33:26,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-08T03:33:26,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-08T03:33:26,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-08T03:33:26,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,316   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-08T03:33:26,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-08T03:33:26,319   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-08T03:33:26,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-08T03:33:26,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-08T03:33:26,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-08T03:33:26,344   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-08T03:33:26,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-08T03:33:26,351   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-08T03:33:26,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-08T03:33:26,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-08T03:33:26,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,383   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-08T03:33:26,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-08T03:33:26,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-08T03:33:26,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-08T03:33:26,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-08T03:33:26,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,476   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,504   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-08T03:33:26,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-08T03:33:26,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-08T03:33:26,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-08T03:33:26,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,520   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-08T03:33:26,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-08T03:33:26,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-08T03:33:26,549   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-08T03:33:26,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:26,699   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-08T03:33:26,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-08T03:33:26,704   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-08T03:33:26,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-08T03:33:26,708   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-03-08T03:33:26,713   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,761   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,822   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,961   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:26,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:26,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,001   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:27,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-08T03:33:27,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-08T03:33:27,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-08T03:33:27,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-08T03:33:27,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
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2024-03-08T03:33:27,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,295   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,306   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-08T03:33:27,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-08T03:33:27,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-08T03:33:27,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-08T03:33:27,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-08T03:33:27,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-08T03:33:27,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-08T03:33:27,324   running install_egg_info
2024-03-08T03:33:27,331   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.18-py3.9.egg-info
2024-03-08T03:33:27,344   running install_scripts
2024-03-08T03:33:27,391   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.18.dist-info/WHEEL
2024-03-08T03:33:27,394   creating '/tmp/pip-wheel-i472lbnl/.tmp-jirwjsqp/moleculekit-1.8.18-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-08T03:33:27,397   adding 'moleculekit/__init__.py'
2024-03-08T03:33:27,398   adding 'moleculekit/_version.py'
2024-03-08T03:33:27,400   adding 'moleculekit/align.py'
2024-03-08T03:33:27,747   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:27,910   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:27,916   adding 'moleculekit/bondguesser.py'
2024-03-08T03:33:28,159   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:28,168   adding 'moleculekit/config.py'
2024-03-08T03:33:28,333   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:28,339   adding 'moleculekit/dihedral.py'
2024-03-08T03:33:28,341   adding 'moleculekit/distance.py'
2024-03-08T03:33:28,660   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:28,672   adding 'moleculekit/home.py'
2024-03-08T03:33:28,673   adding 'moleculekit/logging.ini'
2024-03-08T03:33:28,688   adding 'moleculekit/molecule.py'
2024-03-08T03:33:28,915   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:28,923   adding 'moleculekit/opm.py'
2024-03-08T03:33:28,926   adding 'moleculekit/periodictable.py'
2024-03-08T03:33:28,927   adding 'moleculekit/pymolgraphics.py'
2024-03-08T03:33:28,928   adding 'moleculekit/rcsb.py'
2024-03-08T03:33:28,930   adding 'moleculekit/rdkitintegration.py'
2024-03-08T03:33:28,943   adding 'moleculekit/readers.py'
2024-03-08T03:33:29,548   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:29,861   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:29,873   adding 'moleculekit/util.py'
2024-03-08T03:33:29,875   adding 'moleculekit/version.py'
2024-03-08T03:33:29,876   adding 'moleculekit/viewer.py'
2024-03-08T03:33:29,878   adding 'moleculekit/vmd_wrapper'
2024-03-08T03:33:29,880   adding 'moleculekit/vmdgraphics.py'
2024-03-08T03:33:29,882   adding 'moleculekit/vmdviewer.py'
2024-03-08T03:33:30,150   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:30,164   adding 'moleculekit/writers.py'
2024-03-08T03:33:30,432   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:30,441   adding 'moleculekit/atomselect/__init__.py'
2024-03-08T03:33:30,443   adding 'moleculekit/atomselect/analyze.py'
2024-03-08T03:33:30,445   adding 'moleculekit/atomselect/atomselect.py'
2024-03-08T03:33:30,447   adding 'moleculekit/atomselect/languageparser.py'
2024-03-08T03:33:30,550   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-03-08T03:33:30,561   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-03-08T03:33:30,653   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-03-08T03:33:30,662   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-03-08T03:33:30,763   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-03-08T03:33:30,773   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-03-08T03:33:30,775   adding 'moleculekit/fileformats/__init__.py'
2024-03-08T03:33:30,780   adding 'moleculekit/fileformats/netcdf.py'
2024-03-08T03:33:30,782   adding 'moleculekit/fileformats/utils.py'
2024-03-08T03:33:30,843   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-03-08T03:33:30,850   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-03-08T03:33:30,851   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-03-08T03:33:30,853   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-03-08T03:33:30,854   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-03-08T03:33:30,859   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-03-08T03:33:30,862   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-03-08T03:33:30,925   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-03-08T03:33:30,933   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-03-08T03:33:30,934   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-03-08T03:33:30,936   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-03-08T03:33:30,937   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-03-08T03:33:30,939   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-03-08T03:33:30,940   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-03-08T03:33:30,945   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-03-08T03:33:30,951   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-03-08T03:33:31,046   adding 'moleculekit/fileformats/xtc/trr.c'
2024-03-08T03:33:31,057   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-03-08T03:33:31,059   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-03-08T03:33:31,060   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-03-08T03:33:31,149   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-03-08T03:33:31,158   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-03-08T03:33:31,159   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-03-08T03:33:31,161   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-03-08T03:33:31,162   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-03-08T03:33:31,165   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-03-08T03:33:31,166   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-03-08T03:33:31,167   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-03-08T03:33:31,169   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-03-08T03:33:31,170   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-03-08T03:33:31,177   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-03-08T03:33:31,179   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-03-08T03:33:31,181   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-03-08T03:33:31,183   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-03-08T03:33:31,185   adding 'moleculekit/interactions/__init__.py'
2024-03-08T03:33:31,469   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:31,740   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:31,752   adding 'moleculekit/interactions/interactions.py'
2024-03-08T03:33:32,035   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:32,340   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-03-08T03:33:32,441   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-03-08T03:33:32,450   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-03-08T03:33:32,542   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-03-08T03:33:32,551   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-03-08T03:33:32,643   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-03-08T03:33:32,652   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-03-08T03:33:32,744   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-03-08T03:33:32,753   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-03-08T03:33:32,840   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-03-08T03:33:32,849   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-03-08T03:33:32,850   adding 'moleculekit/pdbx/__init__.py'
2024-03-08T03:33:32,855   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-03-08T03:33:32,857   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-03-08T03:33:32,860   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-03-08T03:33:32,861   adding 'moleculekit/pdbx/reader/__init__.py'
2024-03-08T03:33:32,863   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-03-08T03:33:32,864   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-03-08T03:33:32,866   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-03-08T03:33:32,867   adding 'moleculekit/pdbx/tests/__init__.py'
2024-03-08T03:33:32,869   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-03-08T03:33:32,870   adding 'moleculekit/pdbx/writer/__init__.py'
2024-03-08T03:33:32,872   adding 'moleculekit/ply/__init__.py'
2024-03-08T03:33:32,876   adding 'moleculekit/ply/lex.py'
2024-03-08T03:33:32,888   adding 'moleculekit/ply/yacc.py'
2024-03-08T03:33:32,890   adding 'moleculekit/projections/__init__.py'
2024-03-08T03:33:32,892   adding 'moleculekit/projections/metriccoordinate.py'
2024-03-08T03:33:32,896   adding 'moleculekit/projections/metricdihedral.py'
2024-03-08T03:33:32,900   adding 'moleculekit/projections/metricdistance.py'
2024-03-08T03:33:32,902   adding 'moleculekit/projections/metricfluctuation.py'
2024-03-08T03:33:32,903   adding 'moleculekit/projections/metricgyration.py'
2024-03-08T03:33:32,907   adding 'moleculekit/projections/metricplumed2.py'
2024-03-08T03:33:32,909   adding 'moleculekit/projections/metricrmsd.py'
2024-03-08T03:33:32,911   adding 'moleculekit/projections/metricsasa.py'
2024-03-08T03:33:32,913   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-03-08T03:33:32,915   adding 'moleculekit/projections/metricshell.py'
2024-03-08T03:33:32,917   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-03-08T03:33:32,918   adding 'moleculekit/projections/metrictmscore.py'
2024-03-08T03:33:32,919   adding 'moleculekit/projections/projection.py'
2024-03-08T03:33:32,921   adding 'moleculekit/projections/util.py'
2024-03-08T03:33:32,923   adding 'moleculekit/share/ALA.cif'
2024-03-08T03:33:32,924   adding 'moleculekit/share/backbone.cif'
2024-03-08T03:33:34,229   adding 'moleculekit/share/opm_sequences.json'
2024-03-08T03:33:34,314   adding 'moleculekit/share/atomselect/atomselect.json'
2024-03-08T03:33:34,318   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-03-08T03:33:34,319   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-03-08T03:33:34,321   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-03-08T03:33:34,322   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-03-08T03:33:34,323   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-03-08T03:33:34,324   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-03-08T03:33:34,326   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-03-08T03:33:34,327   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-03-08T03:33:34,328   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-03-08T03:33:34,329   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-03-08T03:33:34,330   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-03-08T03:33:34,332   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-03-08T03:33:34,333   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-03-08T03:33:34,334   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-03-08T03:33:34,335   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-03-08T03:33:34,336   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-03-08T03:33:34,338   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-03-08T03:33:34,339   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-03-08T03:33:34,340   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-03-08T03:33:34,341   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-03-08T03:33:34,343   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-03-08T03:33:34,344   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-03-08T03:33:34,345   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-03-08T03:33:34,346   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-03-08T03:33:34,348   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-03-08T03:33:34,349   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-03-08T03:33:34,350   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-03-08T03:33:34,351   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-03-08T03:33:34,352   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-03-08T03:33:34,354   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-03-08T03:33:34,355   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-03-08T03:33:34,356   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-03-08T03:33:34,357   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-03-08T03:33:34,358   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-03-08T03:33:34,359   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-03-08T03:33:34,360   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-03-08T03:33:34,362   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-03-08T03:33:34,363   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-03-08T03:33:34,364   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-03-08T03:33:34,365   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-03-08T03:33:34,367   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-03-08T03:33:34,368   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-03-08T03:33:34,369   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-03-08T03:33:34,370   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-03-08T03:33:34,371   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-03-08T03:33:34,373   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-03-08T03:33:34,374   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-03-08T03:33:34,375   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-03-08T03:33:34,376   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-03-08T03:33:34,377   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-03-08T03:33:34,379   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-03-08T03:33:34,380   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-03-08T03:33:34,381   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-03-08T03:33:34,382   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-03-08T03:33:34,383   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-03-08T03:33:34,385   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-03-08T03:33:34,386   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-03-08T03:33:34,387   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-03-08T03:33:34,388   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-03-08T03:33:34,389   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-03-08T03:33:34,390   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-03-08T03:33:34,392   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-03-08T03:33:34,393   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-03-08T03:33:34,394   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-03-08T03:33:34,395   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-03-08T03:33:34,397   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-03-08T03:33:34,398   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-03-08T03:33:34,399   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-03-08T03:33:34,400   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-03-08T03:33:34,401   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-03-08T03:33:34,403   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-03-08T03:33:34,404   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-03-08T03:33:34,405   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-03-08T03:33:34,406   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-03-08T03:33:34,407   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-03-08T03:33:34,408   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-03-08T03:33:34,410   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-03-08T03:33:34,411   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-03-08T03:33:34,412   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-03-08T03:33:34,413   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-03-08T03:33:34,414   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-03-08T03:33:34,416   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-03-08T03:33:34,417   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-03-08T03:33:34,418   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-03-08T03:33:34,419   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-03-08T03:33:34,420   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-03-08T03:33:34,422   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-03-08T03:33:34,423   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-03-08T03:33:34,424   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-03-08T03:33:34,425   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-03-08T03:33:34,426   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-03-08T03:33:34,428   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-03-08T03:33:34,429   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-03-08T03:33:34,430   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-03-08T03:33:34,431   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-03-08T03:33:34,433   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-03-08T03:33:34,434   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-03-08T03:33:34,435   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-03-08T03:33:34,436   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-03-08T03:33:34,437   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-03-08T03:33:34,438   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-03-08T03:33:34,440   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-03-08T03:33:34,441   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-03-08T03:33:34,442   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-03-08T03:33:34,443   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-03-08T03:33:34,445   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-03-08T03:33:34,446   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-03-08T03:33:34,447   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-03-08T03:33:34,448   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-03-08T03:33:34,449   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-03-08T03:33:34,451   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-03-08T03:33:34,452   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-03-08T03:33:34,453   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-03-08T03:33:34,454   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-03-08T03:33:34,455   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-03-08T03:33:34,457   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-03-08T03:33:34,458   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-03-08T03:33:34,459   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-03-08T03:33:34,460   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-03-08T03:33:34,461   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-03-08T03:33:34,463   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-03-08T03:33:34,464   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-03-08T03:33:34,465   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-03-08T03:33:34,466   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-03-08T03:33:34,467   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-03-08T03:33:34,469   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-03-08T03:33:34,470   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-03-08T03:33:34,471   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-03-08T03:33:34,473   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-03-08T03:33:34,474   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-03-08T03:33:34,475   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-03-08T03:33:34,476   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-03-08T03:33:34,478   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-03-08T03:33:34,479   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-03-08T03:33:34,480   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-03-08T03:33:34,481   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-03-08T03:33:34,482   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-03-08T03:33:34,484   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-03-08T03:33:34,485   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-03-08T03:33:34,486   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-03-08T03:33:34,487   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-03-08T03:33:34,489   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-03-08T03:33:34,490   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-03-08T03:33:34,491   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-03-08T03:33:34,492   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-03-08T03:33:34,493   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-03-08T03:33:34,494   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-03-08T03:33:34,496   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-03-08T03:33:34,497   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-03-08T03:33:34,498   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-03-08T03:33:34,499   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-03-08T03:33:34,500   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-03-08T03:33:34,502   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-03-08T03:33:34,503   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-03-08T03:33:34,504   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-03-08T03:33:34,506   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-03-08T03:33:34,507   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-03-08T03:33:34,508   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-03-08T03:33:34,509   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-03-08T03:33:34,510   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-03-08T03:33:34,512   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-03-08T03:33:34,513   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-03-08T03:33:34,514   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-03-08T03:33:34,515   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-03-08T03:33:34,516   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-03-08T03:33:34,517   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-03-08T03:33:34,519   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-03-08T03:33:34,520   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-03-08T03:33:34,521   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-03-08T03:33:34,522   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-03-08T03:33:34,524   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-03-08T03:33:34,525   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-03-08T03:33:34,526   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-03-08T03:33:34,527   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-03-08T03:33:34,528   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-03-08T03:33:34,530   adding 'moleculekit/smallmol/__init__.py'
2024-03-08T03:33:34,535   adding 'moleculekit/smallmol/smallmol.py'
2024-03-08T03:33:34,538   adding 'moleculekit/smallmol/smallmollib.py'
2024-03-08T03:33:34,540   adding 'moleculekit/smallmol/test_smallmol.py'
2024-03-08T03:33:34,541   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-03-08T03:33:34,543   adding 'moleculekit/smallmol/util.py'
2024-03-08T03:33:34,545   adding 'moleculekit/smallmol/tools/__init__.py'
2024-03-08T03:33:34,547   adding 'moleculekit/smallmol/tools/clustering.py'
2024-03-08T03:33:34,548   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-03-08T03:33:34,550   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-03-08T03:33:34,640   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-03-08T03:33:34,649   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-03-08T03:33:34,650   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-03-08T03:33:34,652   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-03-08T03:33:34,669   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-03-08T03:33:34,673   adding 'moleculekit/tools/__init__.py'
2024-03-08T03:33:34,675   adding 'moleculekit/tools/atomtyper.py'
2024-03-08T03:33:34,677   adding 'moleculekit/tools/autosegment.py'
2024-03-08T03:33:34,679   adding 'moleculekit/tools/crystalpacking.py'
2024-03-08T03:33:34,682   adding 'moleculekit/tools/detect.py'
2024-03-08T03:33:34,684   adding 'moleculekit/tools/docking.py'
2024-03-08T03:33:34,686   adding 'moleculekit/tools/graphalignment.py'
2024-03-08T03:33:34,688   adding 'moleculekit/tools/hhblitsprofile.py'
2024-03-08T03:33:34,689   adding 'moleculekit/tools/modelling.py'
2024-03-08T03:33:34,691   adding 'moleculekit/tools/moleculechecks.py'
2024-03-08T03:33:34,697   adding 'moleculekit/tools/preparation.py'
2024-03-08T03:33:34,699   adding 'moleculekit/tools/preparation_customres.py'
2024-03-08T03:33:34,701   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-03-08T03:33:34,704   adding 'moleculekit/tools/voxeldescriptors.py'
2024-03-08T03:33:34,706   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-03-08T03:33:34,707   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-03-08T03:33:34,800   adding 'moleculekit/wrapping/wrapping.cpp'
2024-03-08T03:33:34,809   adding 'moleculekit/wrapping/wrapping.pyx'
2024-03-08T03:33:34,811   adding 'moleculekit-1.8.18.dist-info/LICENSE'
2024-03-08T03:33:34,812   adding 'moleculekit-1.8.18.dist-info/METADATA'
2024-03-08T03:33:34,813   adding 'moleculekit-1.8.18.dist-info/WHEEL'
2024-03-08T03:33:34,814   adding 'moleculekit-1.8.18.dist-info/top_level.txt'
2024-03-08T03:33:34,820   adding 'moleculekit-1.8.18.dist-info/RECORD'
2024-03-08T03:33:34,979   removing build/bdist.linux-armv7l/wheel
2024-03-08T03:33:35,256   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-03-08T03:33:35,561   Created wheel for moleculekit: filename=moleculekit-1.8.18-cp39-cp39-linux_armv7l.whl size=14237791 sha256=e68eac17fe875d63e2f87c65b4a3edc014f7342af7f6944ec4b38e6a4255dd51
2024-03-08T03:33:35,562   Stored in directory: /tmp/pip-ephem-wheel-cache-z6xwwk6a/wheels/55/8f/6c/c10cb12174faf61ae9f65a263b5a7d92dada2fcc7475ad4f0d
2024-03-08T03:33:35,589 Successfully built moleculekit
2024-03-08T03:33:35,938 Removed build tracker: '/tmp/pip-build-tracker-rlbudmvw'