2024-03-08T07:39:19,501 Created temporary directory: /tmp/pip-build-tracker-xr_8h8fh 2024-03-08T07:39:19,503 Initialized build tracking at /tmp/pip-build-tracker-xr_8h8fh 2024-03-08T07:39:19,503 Created build tracker: /tmp/pip-build-tracker-xr_8h8fh 2024-03-08T07:39:19,504 Entered build tracker: /tmp/pip-build-tracker-xr_8h8fh 2024-03-08T07:39:19,504 Created temporary directory: /tmp/pip-wheel-8y23qd1s 2024-03-08T07:39:19,508 Created temporary directory: /tmp/pip-ephem-wheel-cache-45p3fnfw 2024-03-08T07:39:19,530 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-08T07:39:19,533 2 location(s) to search for versions of abutils: 2024-03-08T07:39:19,533 * https://pypi.org/simple/abutils/ 2024-03-08T07:39:19,533 * https://www.piwheels.org/simple/abutils/ 2024-03-08T07:39:19,534 Fetching project page and analyzing links: https://pypi.org/simple/abutils/ 2024-03-08T07:39:19,535 Getting page https://pypi.org/simple/abutils/ 2024-03-08T07:39:19,536 Found index url https://pypi.org/simple/ 2024-03-08T07:39:19,678 Fetched page https://pypi.org/simple/abutils/ as application/vnd.pypi.simple.v1+json 2024-03-08T07:39:19,689 Found link https://files.pythonhosted.org/packages/50/68/e90af4390a5bf4ae7f4d4c320618c21938407e2cbccb1d8eb9e2128129f7/abutils-0.0.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.1 2024-03-08T07:39:19,690 Found link https://files.pythonhosted.org/packages/2a/34/20450169e044c8a5b3f0789cb6792ac3f0d94ee7314aecda4332460d3996/abutils-0.0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.2 2024-03-08T07:39:19,691 Found link https://files.pythonhosted.org/packages/e7/0b/92eacaadffa6dbe5536af17cd2288991862e5ca8a5193bc3f5f0c511939b/abutils-0.0.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.3 2024-03-08T07:39:19,691 Found link https://files.pythonhosted.org/packages/66/9c/c88a230d9a7df70ed076345a5697bffbac79affa98de6bc7335cbe399508/abutils-0.0.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.4 2024-03-08T07:39:19,692 Found link https://files.pythonhosted.org/packages/36/3e/e6b030787fca71eedbaaa8be3b8b0169a655c7403622bc0c418918121b72/abutils-0.0.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.5 2024-03-08T07:39:19,693 Found link https://files.pythonhosted.org/packages/c2/4b/a1c076b09bf2ab1f5545d0f9fe05c7861166c49ea9846f2d72f6306e792c/abutils-0.0.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.6 2024-03-08T07:39:19,694 Found link https://files.pythonhosted.org/packages/ba/48/ccd3a0f5de7c0b2857f163b24120b027f9b2d88b5b8898646a6126d2ce6b/abutils-0.0.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.7 2024-03-08T07:39:19,694 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/8e/ba/0b774748bc954d98e3246982d1017d09459ecbc21a76628161aa49d4e3fc/abutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2024-03-08T07:39:19,695 Found link 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Fetching project page and analyzing links: https://www.piwheels.org/simple/abutils/ 2024-03-08T07:39:19,734 Getting page https://www.piwheels.org/simple/abutils/ 2024-03-08T07:39:19,735 Found index url https://www.piwheels.org/simple/ 2024-03-08T07:39:19,885 Fetched page https://www.piwheels.org/simple/abutils/ as text/html 2024-03-08T07:39:19,894 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.15-py3-none-any.whl#sha256=c5ebdecdf4701ebf0727be6284c1dae7f15807f49b60f5b74143b0fce191886a (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,895 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.14-py3-none-any.whl#sha256=77e18b7cd259b053cb0519c5069e2802c6e5e89dcfb5ee231dcce991bfe27d40 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,895 Skipping link: No binaries permitted for abutils: 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https://www.piwheels.org/simple/abutils/abutils-0.4.10-py3-none-any.whl#sha256=5a6ea551b1f98cfdcabd16be056be46843163b5f5fce2e3b2de758239505a1d2 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,897 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.9-py3-none-any.whl#sha256=9558893155ed3ef1feed683a43390aa5ce78a00746f32452945dc90cfe733b73 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,898 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.5-py3-none-any.whl#sha256=ff4790a1aac8a099c603fbc67c4d341a154c5f999d75d9b9da4a0e1ebc8ba0b4 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,899 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.4-py3-none-any.whl#sha256=c6431239a8778cec21099f85b769106599aeb18efcb2b95b7da0a6803add1fc3 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,900 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.3-py3-none-any.whl#sha256=5057eda1cd8d00800ffc6c3f7d9134301b04e1a27f67f2d2126809d2463da701 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,901 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.2-py3-none-any.whl#sha256=e3a66b81fd28bee5d6aad0c69329e384cb67263a57a72a62a56b7aa63f4d295e (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2024-03-08T07:39:19,902 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.3.1-py3-none-any.whl#sha256=1fbfc14143d5e4d142be747c1c55e24411e9943441689f13193e8cc5a7e9ce11 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,902 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.3.0-py3-none-any.whl#sha256=4260a96c149498cd519f4d6dbcbb5075a0b7cd820b16bec4cd6eafe452f6e7a6 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,903 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.10-py3-none-any.whl#sha256=e3c2000d5fbda1d63690e6f816caf1426457be23f1c6a8fa1ad98e7c60affdc2 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,904 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.9-py3-none-any.whl#sha256=84839a0dab320a6696a87f066a0305c0d4291cabe5e823926b72a5ad8dd04251 (from https://www.piwheels.org/simple/abutils/) 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2024-03-08T07:39:19,908 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.1-py3-none-any.whl#sha256=53ea13e6f02b9605de8c9613420aaed78962fb944ecdfc100603204c264c7d40 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,909 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2-py3-none-any.whl#sha256=ff38b64e1d607db600d5dd88d0a867273e041adde7d995e24c632ca7ee4c07bd (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,909 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.1.1-py3-none-any.whl#sha256=e848425dd30ebba12d526963aed48ce2705734d49626dcc0c01e60813ce6cf98 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,910 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.1.0-py3-none-any.whl#sha256=4546e6994f84194f448c4af73e9ac961b6cee59d5825bce6b688a7eb31f173f8 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,910 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.7-py3-none-any.whl#sha256=54b0191660cee12eae66a1c9a280779122ee367b18dc31f5386ed7d9695ba86d (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,911 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.6-py3-none-any.whl#sha256=fa097decefc770e42b78c47c6b74e544cb886b2913fdd2a9764d1649c1083edc (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,912 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.5-py3-none-any.whl#sha256=82da39e304387e62441d40c8da3e8b8e4f88b62838f0cfa01c9ac53272fd9322 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,912 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.4-py3-none-any.whl#sha256=a857179e2e3aacd72f0100ab26ddd429e314d0484d9dea700b6e3df6e7b08bfc (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,913 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.3-py3-none-any.whl#sha256=3f9161ddaf87fcf6397f20c643a10e6c64dcc028dd9d608e3ba95e9eb4b42301 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,913 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.2-py3-none-any.whl#sha256=fb1485c1bdfebb4961c6b63db9ae9c45af6af544bf5a1d88830bff9601c333f7 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,914 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.1-py3-none-any.whl#sha256=80befe258b5d18e6293ffa5f53b4c6fca19cd9c57418df3ad521a374f3827c35 (from https://www.piwheels.org/simple/abutils/) 2024-03-08T07:39:19,914 Skipping link: not a file: https://www.piwheels.org/simple/abutils/ 2024-03-08T07:39:19,915 Skipping link: not a file: https://pypi.org/simple/abutils/ 2024-03-08T07:39:19,937 Given no hashes to check 1 links for project 'abutils': discarding no candidates 2024-03-08T07:39:19,955 Collecting abutils==0.4.16 2024-03-08T07:39:19,957 Created temporary directory: /tmp/pip-unpack-iy3centn 2024-03-08T07:39:20,173 Downloading abutils-0.4.16.tar.gz (93.8 MB) 2024-03-08T07:39:50,729 Added abutils==0.4.16 from https://files.pythonhosted.org/packages/17/60/7cbf5a780e902a382bdf2d2d7234e31865d1396d4810b32baa82c655bc6c/abutils-0.4.16.tar.gz to build tracker '/tmp/pip-build-tracker-xr_8h8fh' 2024-03-08T07:39:50,731 Running setup.py (path:/tmp/pip-wheel-8y23qd1s/abutils_41c521bdfcb14779824e7837e7e3f16e/setup.py) egg_info for package abutils 2024-03-08T07:39:50,733 Created temporary directory: /tmp/pip-pip-egg-info-6l2pg5p0 2024-03-08T07:39:50,733 Preparing metadata (setup.py): started 2024-03-08T07:39:50,734 Running command python setup.py egg_info 2024-03-08T07:39:53,431 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-08T07:39:53,431 !! 2024-03-08T07:39:53,433 ******************************************************************************** 2024-03-08T07:39:53,433 Usage of dash-separated 'description-file' will not be supported in future 2024-03-08T07:39:53,434 versions. Please use the underscore name 'description_file' instead. 2024-03-08T07:39:53,435 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-08T07:39:53,436 or your builds will no longer be supported. 2024-03-08T07:39:53,438 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-08T07:39:53,438 ******************************************************************************** 2024-03-08T07:39:53,450 !! 2024-03-08T07:39:53,451 opt = self.warn_dash_deprecation(opt, section) 2024-03-08T07:39:54,274 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-08T07:39:54,275 !! 2024-03-08T07:39:54,276 ******************************************************************************** 2024-03-08T07:39:54,277 Usage of dash-separated 'description-file' will not be supported in future 2024-03-08T07:39:54,277 versions. Please use the underscore name 'description_file' instead. 2024-03-08T07:39:54,278 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-08T07:39:54,279 or your builds will no longer be supported. 2024-03-08T07:39:54,280 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-08T07:39:54,281 ******************************************************************************** 2024-03-08T07:39:54,282 !! 2024-03-08T07:39:54,283 opt = self.warn_dash_deprecation(opt, section) 2024-03-08T07:39:54,318 running egg_info 2024-03-08T07:39:54,320 creating /tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info 2024-03-08T07:39:54,345 writing /tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/PKG-INFO 2024-03-08T07:39:54,349 writing dependency_links to /tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/dependency_links.txt 2024-03-08T07:39:54,351 writing requirements to /tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/requires.txt 2024-03-08T07:39:54,352 writing top-level names to /tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/top_level.txt 2024-03-08T07:39:54,354 writing manifest file '/tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/SOURCES.txt' 2024-03-08T07:39:54,441 reading manifest file '/tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/SOURCES.txt' 2024-03-08T07:39:54,443 reading manifest template 'MANIFEST.in' 2024-03-08T07:39:54,448 warning: no files found matching 'abutils/tenx/*' 2024-03-08T07:39:54,452 warning: no files found matching 'abutils/bin/mafft_darwin_amd64/mafftdir/*' 2024-03-08T07:39:54,457 warning: no files found matching 'abutils/bin/mafft_darwin_arm64/mafftdir/*' 2024-03-08T07:39:54,461 warning: no files found matching 'abutils/bin/mafft_linux_amd64/mafftdir/*' 2024-03-08T07:39:54,465 adding license file 'LICENSE' 2024-03-08T07:39:54,473 writing manifest file '/tmp/pip-pip-egg-info-6l2pg5p0/abutils.egg-info/SOURCES.txt' 2024-03-08T07:39:54,586 Preparing metadata (setup.py): finished with status 'done' 2024-03-08T07:39:54,590 Source in /tmp/pip-wheel-8y23qd1s/abutils_41c521bdfcb14779824e7837e7e3f16e has version 0.4.16, which satisfies requirement abutils==0.4.16 from https://files.pythonhosted.org/packages/17/60/7cbf5a780e902a382bdf2d2d7234e31865d1396d4810b32baa82c655bc6c/abutils-0.4.16.tar.gz 2024-03-08T07:39:54,591 Removed abutils==0.4.16 from https://files.pythonhosted.org/packages/17/60/7cbf5a780e902a382bdf2d2d7234e31865d1396d4810b32baa82c655bc6c/abutils-0.4.16.tar.gz from build tracker '/tmp/pip-build-tracker-xr_8h8fh' 2024-03-08T07:39:54,598 Created temporary directory: /tmp/pip-unpack-bi2_8in2 2024-03-08T07:39:54,599 Created temporary directory: /tmp/pip-unpack-kgxpzffi 2024-03-08T07:39:54,623 Building wheels for collected packages: abutils 2024-03-08T07:39:54,627 Created temporary directory: /tmp/pip-wheel-pk_cfnoh 2024-03-08T07:39:54,628 Building wheel for abutils (setup.py): started 2024-03-08T07:39:54,629 Destination directory: /tmp/pip-wheel-pk_cfnoh 2024-03-08T07:39:54,630 Running command python setup.py bdist_wheel 2024-03-08T07:39:55,075 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-08T07:39:55,075 !! 2024-03-08T07:39:55,077 ******************************************************************************** 2024-03-08T07:39:55,077 Usage of dash-separated 'description-file' will not be supported in future 2024-03-08T07:39:55,078 versions. Please use the underscore name 'description_file' instead. 2024-03-08T07:39:55,079 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-08T07:39:55,079 or your builds will no longer be supported. 2024-03-08T07:39:55,080 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-08T07:39:55,081 ******************************************************************************** 2024-03-08T07:39:55,082 !! 2024-03-08T07:39:55,082 opt = self.warn_dash_deprecation(opt, section) 2024-03-08T07:39:55,648 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-08T07:39:55,648 !! 2024-03-08T07:39:55,650 ******************************************************************************** 2024-03-08T07:39:55,650 Usage of dash-separated 'description-file' will not be supported in future 2024-03-08T07:39:55,651 versions. Please use the underscore name 'description_file' instead. 2024-03-08T07:39:55,652 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-08T07:39:55,652 or your builds will no longer be supported. 2024-03-08T07:39:55,653 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-08T07:39:55,654 ******************************************************************************** 2024-03-08T07:39:55,655 !! 2024-03-08T07:39:55,656 opt = self.warn_dash_deprecation(opt, section) 2024-03-08T07:39:55,684 running bdist_wheel 2024-03-08T07:39:55,780 running build 2024-03-08T07:39:55,781 running build_py 2024-03-08T07:39:55,808 creating build 2024-03-08T07:39:55,808 creating build/lib 2024-03-08T07:39:55,809 creating build/lib/abutils 2024-03-08T07:39:55,811 copying abutils/pl.py -> build/lib/abutils 2024-03-08T07:39:55,813 copying abutils/__init__.py -> build/lib/abutils 2024-03-08T07:39:55,814 copying abutils/cl.py -> build/lib/abutils 2024-03-08T07:39:55,816 copying abutils/io.py -> build/lib/abutils 2024-03-08T07:39:55,817 copying abutils/tl.py -> build/lib/abutils 2024-03-08T07:39:55,819 copying abutils/version.py -> build/lib/abutils 2024-03-08T07:39:55,821 creating build/lib/abutils/plots 2024-03-08T07:39:55,822 copying abutils/plots/lineage.py -> build/lib/abutils/plots 2024-03-08T07:39:55,824 copying abutils/plots/__init__.py -> build/lib/abutils/plots 2024-03-08T07:39:55,826 copying abutils/plots/ring.py -> build/lib/abutils/plots 2024-03-08T07:39:55,828 copying abutils/plots/bar.py -> build/lib/abutils/plots 2024-03-08T07:39:55,831 copying abutils/plots/ridge.py -> build/lib/abutils/plots 2024-03-08T07:39:55,833 copying abutils/plots/kde.py -> build/lib/abutils/plots 2024-03-08T07:39:55,836 copying abutils/plots/donut.py -> build/lib/abutils/plots 2024-03-08T07:39:55,839 copying abutils/plots/base.py -> build/lib/abutils/plots 2024-03-08T07:39:55,841 copying abutils/plots/summary.py -> build/lib/abutils/plots 2024-03-08T07:39:55,843 copying abutils/plots/utils.py -> build/lib/abutils/plots 2024-03-08T07:39:55,844 copying abutils/plots/data.py -> build/lib/abutils/plots 2024-03-08T07:39:55,847 copying abutils/plots/scatter.py -> build/lib/abutils/plots 2024-03-08T07:39:55,850 copying abutils/plots/heatmap.py -> build/lib/abutils/plots 2024-03-08T07:39:55,853 creating build/lib/abutils/core 2024-03-08T07:39:55,853 copying abutils/core/lineage.py -> build/lib/abutils/core 2024-03-08T07:39:55,857 copying abutils/core/__init__.py -> build/lib/abutils/core 2024-03-08T07:39:55,858 copying abutils/core/pair.py -> build/lib/abutils/core 2024-03-08T07:39:55,861 copying abutils/core/sequence.py -> build/lib/abutils/core 2024-03-08T07:39:55,864 creating build/lib/abutils/utils 2024-03-08T07:39:55,865 copying abutils/utils/log.py -> build/lib/abutils/utils 2024-03-08T07:39:55,867 copying abutils/utils/s3.py -> build/lib/abutils/utils 2024-03-08T07:39:55,870 copying abutils/utils/__init__.py -> build/lib/abutils/utils 2024-03-08T07:39:55,872 copying abutils/utils/seqio.py -> build/lib/abutils/utils 2024-03-08T07:39:55,874 copying abutils/utils/jobs.py -> build/lib/abutils/utils 2024-03-08T07:39:55,876 copying abutils/utils/circos.py -> build/lib/abutils/utils 2024-03-08T07:39:55,878 copying abutils/utils/phylogeny.py -> build/lib/abutils/utils 2024-03-08T07:39:55,881 copying abutils/utils/alignment.py -> build/lib/abutils/utils 2024-03-08T07:39:55,884 copying abutils/utils/mongodb.py -> build/lib/abutils/utils 2024-03-08T07:39:55,886 copying abutils/utils/germlines.py -> build/lib/abutils/utils 2024-03-08T07:39:55,889 copying abutils/utils/decorators.py -> build/lib/abutils/utils 2024-03-08T07:39:55,891 copying abutils/utils/progbar.py -> build/lib/abutils/utils 2024-03-08T07:39:55,892 copying abutils/utils/convert.py -> build/lib/abutils/utils 2024-03-08T07:39:55,894 copying abutils/utils/database.py -> build/lib/abutils/utils 2024-03-08T07:39:55,896 copying abutils/utils/color.py -> build/lib/abutils/utils 2024-03-08T07:39:55,898 copying abutils/utils/utilities.py -> build/lib/abutils/utils 2024-03-08T07:39:55,900 copying abutils/utils/pipeline.py -> build/lib/abutils/utils 2024-03-08T07:39:55,902 copying abutils/utils/codons.py -> build/lib/abutils/utils 2024-03-08T07:39:55,903 copying abutils/utils/cluster.py -> build/lib/abutils/utils 2024-03-08T07:39:55,906 copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils 2024-03-08T07:39:55,909 creating build/lib/abutils/tests 2024-03-08T07:39:55,909 copying abutils/tests/test_pair.py -> build/lib/abutils/tests 2024-03-08T07:39:55,912 copying abutils/tests/__init__.py -> build/lib/abutils/tests 2024-03-08T07:39:55,914 copying abutils/tests/test_phylo.py -> build/lib/abutils/tests 2024-03-08T07:39:55,916 copying abutils/tests/test_cluster.py -> build/lib/abutils/tests 2024-03-08T07:39:55,919 copying abutils/tests/test_utilities.py -> build/lib/abutils/tests 2024-03-08T07:39:55,920 copying abutils/tests/test_clonify.py -> build/lib/abutils/tests 2024-03-08T07:39:55,923 copying abutils/tests/test_sequence.py -> build/lib/abutils/tests 2024-03-08T07:39:55,925 copying abutils/tests/test_alignment.py -> build/lib/abutils/tests 2024-03-08T07:39:55,927 copying abutils/tests/test_color.py -> build/lib/abutils/tests 2024-03-08T07:39:55,930 creating build/lib/abutils/tools 2024-03-08T07:39:55,931 copying abutils/tools/__init__.py -> build/lib/abutils/tools 2024-03-08T07:39:55,933 copying abutils/tools/similarity.py -> build/lib/abutils/tools 2024-03-08T07:39:55,935 copying abutils/tools/alignment.py -> build/lib/abutils/tools 2024-03-08T07:39:55,939 copying abutils/tools/clonify.py -> build/lib/abutils/tools 2024-03-08T07:39:55,941 copying abutils/tools/phylo.py -> build/lib/abutils/tools 2024-03-08T07:39:55,943 copying abutils/tools/cluster.py -> build/lib/abutils/tools 2024-03-08T07:39:55,947 creating build/lib/abutils/plots/mixins 2024-03-08T07:39:55,947 copying abutils/plots/mixins/__init__.py -> build/lib/abutils/plots/mixins 2024-03-08T07:39:55,949 copying abutils/plots/mixins/hue.py -> build/lib/abutils/plots/mixins 2024-03-08T07:39:55,951 creating build/lib/abutils/plots/models 2024-03-08T07:39:55,952 copying abutils/plots/models/__init__.py -> build/lib/abutils/plots/models 2024-03-08T07:39:55,954 copying abutils/plots/models/data.py -> build/lib/abutils/plots/models 2024-03-08T07:39:55,956 running egg_info 2024-03-08T07:39:56,013 writing abutils.egg-info/PKG-INFO 2024-03-08T07:39:56,017 writing dependency_links to abutils.egg-info/dependency_links.txt 2024-03-08T07:39:56,019 writing requirements to abutils.egg-info/requires.txt 2024-03-08T07:39:56,020 writing top-level names to abutils.egg-info/top_level.txt 2024-03-08T07:39:56,054 reading manifest file 'abutils.egg-info/SOURCES.txt' 2024-03-08T07:39:56,060 reading manifest template 'MANIFEST.in' 2024-03-08T07:39:56,064 warning: no files found matching 'abutils/tenx/*' 2024-03-08T07:39:56,067 warning: no files found matching 'abutils/bin/mafft_darwin_amd64/mafftdir/*' 2024-03-08T07:39:56,070 warning: no files found matching 'abutils/bin/mafft_darwin_arm64/mafftdir/*' 2024-03-08T07:39:56,073 warning: no files found matching 'abutils/bin/mafft_linux_amd64/mafftdir/*' 2024-03-08T07:39:56,075 adding license file 'LICENSE' 2024-03-08T07:39:56,086 writing manifest file 'abutils.egg-info/SOURCES.txt' 2024-03-08T07:39:56,088 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin' is absent from the `packages` configuration. 2024-03-08T07:39:56,089 !! 2024-03-08T07:39:56,090 ******************************************************************************** 2024-03-08T07:39:56,091 ############################ 2024-03-08T07:39:56,091 # Package would be ignored # 2024-03-08T07:39:56,092 ############################ 2024-03-08T07:39:56,092 Python recognizes 'abutils.bin' as an importable package[^1], 2024-03-08T07:39:56,093 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,094 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,094 package, please make sure that 'abutils.bin' is explicitly added 2024-03-08T07:39:56,094 to the `packages` configuration field. 2024-03-08T07:39:56,095 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,096 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,096 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,097 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,098 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,099 If you don't want 'abutils.bin' to be distributed and are 2024-03-08T07:39:56,099 already explicitly excluding 'abutils.bin' via 2024-03-08T07:39:56,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,101 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,102 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,103 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,104 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,105 even if it does not contain any `.py` files. 2024-03-08T07:39:56,105 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,106 directory, all directories are treated like packages. 2024-03-08T07:39:56,106 ******************************************************************************** 2024-03-08T07:39:56,107 !! 2024-03-08T07:39:56,108 check.warn(importable) 2024-03-08T07:39:56,108 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_darwin_amd64' is absent from the `packages` configuration. 2024-03-08T07:39:56,109 !! 2024-03-08T07:39:56,110 ******************************************************************************** 2024-03-08T07:39:56,110 ############################ 2024-03-08T07:39:56,111 # Package would be ignored # 2024-03-08T07:39:56,111 ############################ 2024-03-08T07:39:56,112 Python recognizes 'abutils.bin.mafft_darwin_amd64' as an importable package[^1], 2024-03-08T07:39:56,112 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,113 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,114 package, please make sure that 'abutils.bin.mafft_darwin_amd64' is explicitly added 2024-03-08T07:39:56,114 to the `packages` configuration field. 2024-03-08T07:39:56,116 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,117 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,118 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,122 If you don't want 'abutils.bin.mafft_darwin_amd64' to be distributed and are 2024-03-08T07:39:56,123 already explicitly excluding 'abutils.bin.mafft_darwin_amd64' via 2024-03-08T07:39:56,125 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,126 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,126 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,130 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,132 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,134 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,134 even if it does not contain any `.py` files. 2024-03-08T07:39:56,136 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,137 directory, all directories are treated like packages. 2024-03-08T07:39:56,138 ******************************************************************************** 2024-03-08T07:39:56,140 !! 2024-03-08T07:39:56,141 check.warn(importable) 2024-03-08T07:39:56,142 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' is absent from the `packages` configuration. 2024-03-08T07:39:56,142 !! 2024-03-08T07:39:56,143 ******************************************************************************** 2024-03-08T07:39:56,144 ############################ 2024-03-08T07:39:56,146 # Package would be ignored # 2024-03-08T07:39:56,149 ############################ 2024-03-08T07:39:56,150 Python recognizes 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' as an importable package[^1], 2024-03-08T07:39:56,151 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,154 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,158 package, please make sure that 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' is explicitly added 2024-03-08T07:39:56,159 to the `packages` configuration field. 2024-03-08T07:39:56,160 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,161 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,163 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,164 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,165 If you don't want 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' to be distributed and are 2024-03-08T07:39:56,165 already explicitly excluding 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' via 2024-03-08T07:39:56,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,166 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,168 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,169 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,171 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,173 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,173 even if it does not contain any `.py` files. 2024-03-08T07:39:56,174 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,175 directory, all directories are treated like packages. 2024-03-08T07:39:56,175 ******************************************************************************** 2024-03-08T07:39:56,176 !! 2024-03-08T07:39:56,177 check.warn(importable) 2024-03-08T07:39:56,177 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' is absent from the `packages` configuration. 2024-03-08T07:39:56,178 !! 2024-03-08T07:39:56,178 ******************************************************************************** 2024-03-08T07:39:56,179 ############################ 2024-03-08T07:39:56,179 # Package would be ignored # 2024-03-08T07:39:56,180 ############################ 2024-03-08T07:39:56,180 Python recognizes 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' as an importable package[^1], 2024-03-08T07:39:56,181 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,182 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,182 package, please make sure that 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' is explicitly added 2024-03-08T07:39:56,183 to the `packages` configuration field. 2024-03-08T07:39:56,184 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,184 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,185 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,186 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,187 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,188 If you don't want 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' to be distributed and are 2024-03-08T07:39:56,189 already explicitly excluding 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' via 2024-03-08T07:39:56,190 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,190 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,191 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,192 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,196 even if it does not contain any `.py` files. 2024-03-08T07:39:56,196 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,197 directory, all directories are treated like packages. 2024-03-08T07:39:56,198 ******************************************************************************** 2024-03-08T07:39:56,199 !! 2024-03-08T07:39:56,200 check.warn(importable) 2024-03-08T07:39:56,200 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_darwin_arm64' is absent from the `packages` configuration. 2024-03-08T07:39:56,201 !! 2024-03-08T07:39:56,202 ******************************************************************************** 2024-03-08T07:39:56,202 ############################ 2024-03-08T07:39:56,203 # Package would be ignored # 2024-03-08T07:39:56,204 ############################ 2024-03-08T07:39:56,204 Python recognizes 'abutils.bin.mafft_darwin_arm64' as an importable package[^1], 2024-03-08T07:39:56,205 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,206 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,207 package, please make sure that 'abutils.bin.mafft_darwin_arm64' is explicitly added 2024-03-08T07:39:56,207 to the `packages` configuration field. 2024-03-08T07:39:56,209 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,209 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,210 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,211 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,211 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,212 If you don't want 'abutils.bin.mafft_darwin_arm64' to be distributed and are 2024-03-08T07:39:56,213 already explicitly excluding 'abutils.bin.mafft_darwin_arm64' via 2024-03-08T07:39:56,213 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,214 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,214 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,215 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,216 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,217 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,223 even if it does not contain any `.py` files. 2024-03-08T07:39:56,228 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,235 directory, all directories are treated like packages. 2024-03-08T07:39:56,269 ******************************************************************************** 2024-03-08T07:39:56,294 !! 2024-03-08T07:39:56,297 check.warn(importable) 2024-03-08T07:39:56,298 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' is absent from the `packages` configuration. 2024-03-08T07:39:56,298 !! 2024-03-08T07:39:56,301 ******************************************************************************** 2024-03-08T07:39:56,302 ############################ 2024-03-08T07:39:56,303 # Package would be ignored # 2024-03-08T07:39:56,303 ############################ 2024-03-08T07:39:56,304 Python recognizes 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' as an importable package[^1], 2024-03-08T07:39:56,305 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,306 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,307 package, please make sure that 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' is explicitly added 2024-03-08T07:39:56,307 to the `packages` configuration field. 2024-03-08T07:39:56,309 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,310 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,311 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,313 If you don't want 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' to be distributed and are 2024-03-08T07:39:56,314 already explicitly excluding 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' via 2024-03-08T07:39:56,314 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,315 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,315 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,317 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,318 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,320 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,320 even if it does not contain any `.py` files. 2024-03-08T07:39:56,320 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,321 directory, all directories are treated like packages. 2024-03-08T07:39:56,321 ******************************************************************************** 2024-03-08T07:39:56,322 !! 2024-03-08T07:39:56,322 check.warn(importable) 2024-03-08T07:39:56,323 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' is absent from the `packages` configuration. 2024-03-08T07:39:56,323 !! 2024-03-08T07:39:56,324 ******************************************************************************** 2024-03-08T07:39:56,325 ############################ 2024-03-08T07:39:56,325 # Package would be ignored # 2024-03-08T07:39:56,325 ############################ 2024-03-08T07:39:56,326 Python recognizes 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' as an importable package[^1], 2024-03-08T07:39:56,326 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,327 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,328 package, please make sure that 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' is explicitly added 2024-03-08T07:39:56,328 to the `packages` configuration field. 2024-03-08T07:39:56,329 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,330 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,330 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,332 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,333 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,334 If you don't want 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' to be distributed and are 2024-03-08T07:39:56,335 already explicitly excluding 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' via 2024-03-08T07:39:56,336 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,336 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,337 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,338 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,341 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,342 even if it does not contain any `.py` files. 2024-03-08T07:39:56,342 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,343 directory, all directories are treated like packages. 2024-03-08T07:39:56,344 ******************************************************************************** 2024-03-08T07:39:56,345 !! 2024-03-08T07:39:56,345 check.warn(importable) 2024-03-08T07:39:56,346 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_linux_amd64' is absent from the `packages` configuration. 2024-03-08T07:39:56,346 !! 2024-03-08T07:39:56,348 ******************************************************************************** 2024-03-08T07:39:56,348 ############################ 2024-03-08T07:39:56,349 # Package would be ignored # 2024-03-08T07:39:56,350 ############################ 2024-03-08T07:39:56,351 Python recognizes 'abutils.bin.mafft_linux_amd64' as an importable package[^1], 2024-03-08T07:39:56,351 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,352 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,352 package, please make sure that 'abutils.bin.mafft_linux_amd64' is explicitly added 2024-03-08T07:39:56,353 to the `packages` configuration field. 2024-03-08T07:39:56,353 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,354 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,354 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,355 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,356 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,357 If you don't want 'abutils.bin.mafft_linux_amd64' to be distributed and are 2024-03-08T07:39:56,357 already explicitly excluding 'abutils.bin.mafft_linux_amd64' via 2024-03-08T07:39:56,358 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,358 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,359 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,360 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,363 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,364 even if it does not contain any `.py` files. 2024-03-08T07:39:56,364 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,365 directory, all directories are treated like packages. 2024-03-08T07:39:56,365 ******************************************************************************** 2024-03-08T07:39:56,367 !! 2024-03-08T07:39:56,367 check.warn(importable) 2024-03-08T07:39:56,368 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_linux_amd64.mafftdir.bin' is absent from the `packages` configuration. 2024-03-08T07:39:56,369 !! 2024-03-08T07:39:56,370 ******************************************************************************** 2024-03-08T07:39:56,371 ############################ 2024-03-08T07:39:56,371 # Package would be ignored # 2024-03-08T07:39:56,372 ############################ 2024-03-08T07:39:56,372 Python recognizes 'abutils.bin.mafft_linux_amd64.mafftdir.bin' as an importable package[^1], 2024-03-08T07:39:56,373 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,375 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,376 package, please make sure that 'abutils.bin.mafft_linux_amd64.mafftdir.bin' is explicitly added 2024-03-08T07:39:56,377 to the `packages` configuration field. 2024-03-08T07:39:56,379 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,380 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,381 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,383 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,385 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,387 If you don't want 'abutils.bin.mafft_linux_amd64.mafftdir.bin' to be distributed and are 2024-03-08T07:39:56,388 already explicitly excluding 'abutils.bin.mafft_linux_amd64.mafftdir.bin' via 2024-03-08T07:39:56,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,390 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,391 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,392 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,393 even if it does not contain any `.py` files. 2024-03-08T07:39:56,394 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,394 directory, all directories are treated like packages. 2024-03-08T07:39:56,395 ******************************************************************************** 2024-03-08T07:39:56,396 !! 2024-03-08T07:39:56,396 check.warn(importable) 2024-03-08T07:39:56,397 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' is absent from the `packages` configuration. 2024-03-08T07:39:56,397 !! 2024-03-08T07:39:56,398 ******************************************************************************** 2024-03-08T07:39:56,398 ############################ 2024-03-08T07:39:56,399 # Package would be ignored # 2024-03-08T07:39:56,399 ############################ 2024-03-08T07:39:56,400 Python recognizes 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' as an importable package[^1], 2024-03-08T07:39:56,401 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,402 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,403 package, please make sure that 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' is explicitly added 2024-03-08T07:39:56,404 to the `packages` configuration field. 2024-03-08T07:39:56,405 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,406 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,408 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,409 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,410 If you don't want 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' to be distributed and are 2024-03-08T07:39:56,411 already explicitly excluding 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' via 2024-03-08T07:39:56,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,412 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,412 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,414 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,415 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,417 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,418 even if it does not contain any `.py` files. 2024-03-08T07:39:56,419 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,420 directory, all directories are treated like packages. 2024-03-08T07:39:56,421 ******************************************************************************** 2024-03-08T07:39:56,422 !! 2024-03-08T07:39:56,423 check.warn(importable) 2024-03-08T07:39:56,424 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration. 2024-03-08T07:39:56,424 !! 2024-03-08T07:39:56,426 ******************************************************************************** 2024-03-08T07:39:56,427 ############################ 2024-03-08T07:39:56,427 # Package would be ignored # 2024-03-08T07:39:56,428 ############################ 2024-03-08T07:39:56,428 Python recognizes 'abutils.utils.matrices' as an importable package[^1], 2024-03-08T07:39:56,429 but it is absent from setuptools' `packages` configuration. 2024-03-08T07:39:56,430 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-08T07:39:56,430 package, please make sure that 'abutils.utils.matrices' is explicitly added 2024-03-08T07:39:56,431 to the `packages` configuration field. 2024-03-08T07:39:56,432 Alternatively, you can also rely on setuptools' discovery methods 2024-03-08T07:39:56,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-08T07:39:56,433 instead of `find_packages(...)`/`find:`). 2024-03-08T07:39:56,434 You can read more about "package discovery" on setuptools documentation page: 2024-03-08T07:39:56,435 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-08T07:39:56,436 If you don't want 'abutils.utils.matrices' to be distributed and are 2024-03-08T07:39:56,436 already explicitly excluding 'abutils.utils.matrices' via 2024-03-08T07:39:56,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-08T07:39:56,438 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-08T07:39:56,439 combination with a more fine grained `package-data` configuration. 2024-03-08T07:39:56,440 You can read more about "package data files" on setuptools documentation page: 2024-03-08T07:39:56,441 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-08T07:39:56,443 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-08T07:39:56,444 even if it does not contain any `.py` files. 2024-03-08T07:39:56,445 On the other hand, currently there is no concept of package data 2024-03-08T07:39:56,445 directory, all directories are treated like packages. 2024-03-08T07:39:56,446 ******************************************************************************** 2024-03-08T07:39:56,447 !! 2024-03-08T07:39:56,448 check.warn(importable) 2024-03-08T07:39:56,449 creating build/lib/abutils/bin 2024-03-08T07:39:56,449 copying abutils/bin/cdhit_darwin_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:56,450 copying abutils/bin/cdhit_darwin_arm64 -> build/lib/abutils/bin 2024-03-08T07:39:56,450 copying abutils/bin/cdhit_linux_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:56,451 copying abutils/bin/fasttree_darwin_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:56,452 copying abutils/bin/fasttree_darwin_arm64 -> build/lib/abutils/bin 2024-03-08T07:39:56,452 copying abutils/bin/fasttree_linux_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:56,453 copying abutils/bin/mafft_darwin -> build/lib/abutils/bin 2024-03-08T07:39:56,453 copying abutils/bin/mafft_linux -> build/lib/abutils/bin 2024-03-08T07:39:56,454 copying abutils/bin/mmseqs_darwin_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:56,455 copying abutils/bin/mmseqs_darwin_arm64 -> build/lib/abutils/bin 2024-03-08T07:39:57,118 copying abutils/bin/mmseqs_linux_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:57,973 copying abutils/bin/muscle3_darwin -> build/lib/abutils/bin 2024-03-08T07:39:57,982 copying abutils/bin/muscle3_linux -> build/lib/abutils/bin 2024-03-08T07:39:57,989 copying abutils/bin/muscle_darwin_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:58,009 copying abutils/bin/muscle_darwin_arm64 -> build/lib/abutils/bin 2024-03-08T07:39:58,028 copying abutils/bin/muscle_linux_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:58,093 copying abutils/bin/vsearch_darwin_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:58,107 copying abutils/bin/vsearch_darwin_arm64 -> build/lib/abutils/bin 2024-03-08T07:39:58,120 copying abutils/bin/vsearch_linux_amd64 -> build/lib/abutils/bin 2024-03-08T07:39:58,160 creating build/lib/abutils/bin/mafft_darwin_amd64 2024-03-08T07:39:58,161 copying abutils/bin/mafft_darwin_amd64/in -> build/lib/abutils/bin/mafft_darwin_amd64 2024-03-08T07:39:58,164 copying abutils/bin/mafft_darwin_amd64/mafft.bat -> build/lib/abutils/bin/mafft_darwin_amd64 2024-03-08T07:39:58,165 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir 2024-03-08T07:39:58,166 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2024-03-08T07:39:58,167 copying abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2024-03-08T07:39:58,171 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,172 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,202 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,218 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,226 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,479 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,512 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,529 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,545 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,564 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,598 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,610 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,625 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,743 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,749 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,778 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,781 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,807 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,809 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,813 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,818 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,845 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,861 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,882 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,916 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,945 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,981 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:58,997 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,016 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,041 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,063 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,067 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,078 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,112 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,126 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,150 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,219 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,256 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:39:59,261 creating build/lib/abutils/bin/mafft_darwin_arm64 2024-03-08T07:39:59,262 copying abutils/bin/mafft_darwin_arm64/in -> build/lib/abutils/bin/mafft_darwin_arm64 2024-03-08T07:39:59,264 copying abutils/bin/mafft_darwin_arm64/mafft.bat -> build/lib/abutils/bin/mafft_darwin_arm64 2024-03-08T07:39:59,266 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir 2024-03-08T07:39:59,267 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2024-03-08T07:39:59,268 copying abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2024-03-08T07:39:59,272 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,274 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,303 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,331 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,340 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,533 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,562 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,582 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,600 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,618 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,655 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,666 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,682 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,710 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,715 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,738 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,741 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,777 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,780 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,782 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,787 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,812 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,834 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,855 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:39:59,963 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,001 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,031 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,044 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,059 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,073 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,092 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,094 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,104 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,131 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,194 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,214 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,247 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,284 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:00,323 creating build/lib/abutils/bin/mafft_linux_amd64 2024-03-08T07:40:00,324 copying abutils/bin/mafft_linux_amd64/mafft.bat -> build/lib/abutils/bin/mafft_linux_amd64 2024-03-08T07:40:00,326 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir 2024-03-08T07:40:00,327 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin 2024-03-08T07:40:00,327 copying abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin 2024-03-08T07:40:00,332 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,333 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,354 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,372 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,384 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,389 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,460 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,463 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,489 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,508 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,530 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,552 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,581 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,600 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,616 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,638 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,640 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,652 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,669 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,671 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,696 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,698 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,701 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,712 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,732 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,751 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,771 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,798 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,823 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,851 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,869 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,906 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,925 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,946 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,949 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,961 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:00,984 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:01,001 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:01,021 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:01,046 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:01,071 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:01,088 creating build/lib/abutils/utils/matrices 2024-03-08T07:40:01,090 copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices 2024-03-08T07:40:01,093 copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices 2024-03-08T07:40:01,096 copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices 2024-03-08T07:40:01,127 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-08T07:40:01,127 !! 2024-03-08T07:40:01,128 ******************************************************************************** 2024-03-08T07:40:01,129 Please avoid running ``setup.py`` directly. 2024-03-08T07:40:01,129 Instead, use pypa/build, pypa/installer or other 2024-03-08T07:40:01,130 standards-based tools. 2024-03-08T07:40:01,131 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-08T07:40:01,131 ******************************************************************************** 2024-03-08T07:40:01,132 !! 2024-03-08T07:40:01,133 self.initialize_options() 2024-03-08T07:40:01,152 installing to build/bdist.linux-armv7l/wheel 2024-03-08T07:40:01,153 running install 2024-03-08T07:40:01,176 running install_lib 2024-03-08T07:40:01,201 creating build/bdist.linux-armv7l 2024-03-08T07:40:01,202 creating build/bdist.linux-armv7l/wheel 2024-03-08T07:40:01,203 creating build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:01,205 creating build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,207 creating build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2024-03-08T07:40:01,208 copying build/lib/abutils/plots/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2024-03-08T07:40:01,209 copying build/lib/abutils/plots/mixins/hue.py -> build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2024-03-08T07:40:01,211 copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,213 copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,215 copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,217 copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,220 creating build/bdist.linux-armv7l/wheel/abutils/plots/models 2024-03-08T07:40:01,221 copying build/lib/abutils/plots/models/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots/models 2024-03-08T07:40:01,223 copying build/lib/abutils/plots/models/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots/models 2024-03-08T07:40:01,225 copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,228 copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,233 copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,237 copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,239 copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,241 copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,243 copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,245 copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,249 copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2024-03-08T07:40:01,252 copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:01,254 copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:01,255 copying build/lib/abutils/cl.py -> build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:01,258 creating build/bdist.linux-armv7l/wheel/abutils/core 2024-03-08T07:40:01,259 copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/core 2024-03-08T07:40:01,262 copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/core 2024-03-08T07:40:01,264 copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/abutils/core 2024-03-08T07:40:01,267 copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/abutils/core 2024-03-08T07:40:01,270 copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:01,272 creating build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,273 copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,275 copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,278 copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,280 copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,282 copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,285 creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2024-03-08T07:40:01,286 copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2024-03-08T07:40:01,288 copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2024-03-08T07:40:01,290 copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2024-03-08T07:40:01,292 copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,294 copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,297 copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,301 copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,303 copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,306 copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,308 copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,310 copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,312 copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,315 copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,318 copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,321 copying build/lib/abutils/utils/pipeline.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,324 copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,327 copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,334 copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2024-03-08T07:40:01,340 creating build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:01,341 copying build/lib/abutils/bin/muscle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:01,363 copying build/lib/abutils/bin/mmseqs_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:02,129 copying build/lib/abutils/bin/mafft_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:02,133 copying build/lib/abutils/bin/vsearch_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:02,169 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64 2024-03-08T07:40:02,170 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir 2024-03-08T07:40:02,172 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/bin 2024-03-08T07:40:02,173 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/bin 2024-03-08T07:40:02,179 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,180 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,202 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,260 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,281 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,301 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,317 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,341 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,358 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,380 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,402 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,412 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,415 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,419 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,440 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,460 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,481 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,484 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,556 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,570 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,606 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,627 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,629 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,657 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,680 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,757 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,776 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,798 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,813 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,831 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,863 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,866 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,869 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,888 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,891 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,921 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,937 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,950 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,973 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:02,995 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:03,017 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2024-03-08T07:40:03,050 copying build/lib/abutils/bin/mafft_linux_amd64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64 2024-03-08T07:40:03,052 copying build/lib/abutils/bin/vsearch_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,066 copying build/lib/abutils/bin/muscle_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,105 copying build/lib/abutils/bin/muscle3_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,113 copying build/lib/abutils/bin/mmseqs_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,243 copying build/lib/abutils/bin/muscle_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,292 copying build/lib/abutils/bin/cdhit_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,344 copying build/lib/abutils/bin/mafft_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,348 copying build/lib/abutils/bin/fasttree_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,355 copying build/lib/abutils/bin/vsearch_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,366 copying build/lib/abutils/bin/cdhit_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:03,371 copying build/lib/abutils/bin/mmseqs_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:04,133 copying build/lib/abutils/bin/fasttree_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:04,186 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2024-03-08T07:40:04,187 copying build/lib/abutils/bin/mafft_darwin_amd64/in -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2024-03-08T07:40:04,189 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir 2024-03-08T07:40:04,191 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2024-03-08T07:40:04,192 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2024-03-08T07:40:04,197 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,199 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,218 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,248 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,266 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,300 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,315 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,333 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,358 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,390 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,420 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,424 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,452 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,481 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,497 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,499 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,708 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,718 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,739 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,745 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,767 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,783 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,814 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,831 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,857 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,873 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,890 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,939 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,941 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,944 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,952 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,955 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:04,986 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:05,002 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:05,007 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:05,035 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:05,052 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:05,070 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2024-03-08T07:40:05,101 copying build/lib/abutils/bin/mafft_darwin_amd64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2024-03-08T07:40:05,103 copying build/lib/abutils/bin/muscle3_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:05,112 copying build/lib/abutils/bin/fasttree_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:05,163 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2024-03-08T07:40:05,164 copying build/lib/abutils/bin/mafft_darwin_arm64/in -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2024-03-08T07:40:05,166 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir 2024-03-08T07:40:05,167 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2024-03-08T07:40:05,168 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2024-03-08T07:40:05,173 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,174 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,191 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,222 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,239 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,269 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,280 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,299 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,318 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,357 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,389 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,394 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,423 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,455 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,474 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,476 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,702 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,710 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,763 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,767 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,783 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,798 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,826 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,840 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,874 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,895 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,921 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,960 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,962 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:05,965 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,012 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,016 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,049 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,064 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,069 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,103 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,118 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,137 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2024-03-08T07:40:06,173 copying build/lib/abutils/bin/mafft_darwin_arm64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2024-03-08T07:40:06,174 copying build/lib/abutils/bin/cdhit_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2024-03-08T07:40:06,179 creating build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,180 copying build/lib/abutils/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,182 copying build/lib/abutils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,183 copying build/lib/abutils/tests/test_phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,185 copying build/lib/abutils/tests/test_cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,188 copying build/lib/abutils/tests/test_utilities.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,189 copying build/lib/abutils/tests/test_clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,191 copying build/lib/abutils/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,193 copying build/lib/abutils/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,196 copying build/lib/abutils/tests/test_color.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2024-03-08T07:40:06,198 copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:06,200 copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/abutils 2024-03-08T07:40:06,202 creating build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,203 copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,205 copying build/lib/abutils/tools/similarity.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,207 copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,211 copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,213 copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,216 copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2024-03-08T07:40:06,219 running install_egg_info 2024-03-08T07:40:06,250 Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/abutils-0.4.16-py3.11.egg-info 2024-03-08T07:40:06,261 running install_scripts 2024-03-08T07:40:06,279 creating build/bdist.linux-armv7l/wheel/abutils-0.4.16.dist-info/WHEEL 2024-03-08T07:40:06,282 creating '/tmp/pip-wheel-pk_cfnoh/abutils-0.4.16-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-08T07:40:06,284 adding 'abutils/__init__.py' 2024-03-08T07:40:06,285 adding 'abutils/cl.py' 2024-03-08T07:40:06,287 adding 'abutils/io.py' 2024-03-08T07:40:06,288 adding 'abutils/pl.py' 2024-03-08T07:40:06,290 adding 'abutils/tl.py' 2024-03-08T07:40:06,291 adding 'abutils/version.py' 2024-03-08T07:40:06,319 adding 'abutils/bin/cdhit_darwin_amd64' 2024-03-08T07:40:06,346 adding 'abutils/bin/cdhit_darwin_arm64' 2024-03-08T07:40:06,370 adding 'abutils/bin/cdhit_linux_amd64' 2024-03-08T07:40:06,411 adding 'abutils/bin/fasttree_darwin_amd64' 2024-03-08T07:40:06,472 adding 'abutils/bin/fasttree_darwin_arm64' 2024-03-08T07:40:06,542 adding 'abutils/bin/fasttree_linux_amd64' 2024-03-08T07:40:06,554 adding 'abutils/bin/mafft_darwin' 2024-03-08T07:40:06,563 adding 'abutils/bin/mafft_linux' 2024-03-08T07:40:07,676 adding 'abutils/bin/mmseqs_darwin_amd64' 2024-03-08T07:40:17,235 adding 'abutils/bin/mmseqs_darwin_arm64' 2024-03-08T07:40:24,581 adding 'abutils/bin/mmseqs_linux_amd64' 2024-03-08T07:40:24,937 adding 'abutils/bin/muscle3_darwin' 2024-03-08T07:40:25,001 adding 'abutils/bin/muscle3_linux' 2024-03-08T07:40:25,184 adding 'abutils/bin/muscle_darwin_amd64' 2024-03-08T07:40:25,344 adding 'abutils/bin/muscle_darwin_arm64' 2024-03-08T07:40:25,857 adding 'abutils/bin/muscle_linux_amd64' 2024-03-08T07:40:25,948 adding 'abutils/bin/vsearch_darwin_amd64' 2024-03-08T07:40:26,016 adding 'abutils/bin/vsearch_darwin_arm64' 2024-03-08T07:40:26,332 adding 'abutils/bin/vsearch_linux_amd64' 2024-03-08T07:40:26,347 adding 'abutils/bin/mafft_darwin_amd64/in' 2024-03-08T07:40:26,349 adding 'abutils/bin/mafft_darwin_amd64/mafft.bat' 2024-03-08T07:40:26,360 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft' 2024-03-08T07:40:26,679 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle' 2024-03-08T07:40:26,841 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap' 2024-03-08T07:40:26,890 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen' 2024-03-08T07:40:29,229 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client' 2024-03-08T07:40:29,629 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast' 2024-03-08T07:40:29,798 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast' 2024-03-08T07:40:29,964 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7' 2024-03-08T07:40:30,126 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre' 2024-03-08T07:40:30,452 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr' 2024-03-08T07:40:30,530 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl' 2024-03-08T07:40:30,662 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter' 2024-03-08T07:40:30,952 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag' 2024-03-08T07:40:30,968 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext' 2024-03-08T07:40:31,127 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance' 2024-03-08T07:40:31,135 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1' 2024-03-08T07:40:31,426 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile' 2024-03-08T07:40:31,438 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1' 2024-03-08T07:40:31,440 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl' 2024-03-08T07:40:31,445 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex' 2024-03-08T07:40:31,744 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist' 2024-03-08T07:40:31,906 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap' 2024-03-08T07:40:32,077 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s' 2024-03-08T07:40:32,404 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair' 2024-03-08T07:40:32,710 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash' 2024-03-08T07:40:33,023 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign' 2024-03-08T07:40:33,162 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq' 2024-03-08T07:40:33,296 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu' 2024-03-08T07:40:33,433 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu' 2024-03-08T07:40:33,594 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score' 2024-03-08T07:40:33,602 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl' 2024-03-08T07:40:33,648 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable' 2024-03-08T07:40:33,935 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore' 2024-03-08T07:40:34,075 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection' 2024-03-08T07:40:34,251 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5' 2024-03-08T07:40:34,556 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast' 2024-03-08T07:40:34,904 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast' 2024-03-08T07:40:34,921 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version' 2024-03-08T07:40:34,923 adding 'abutils/bin/mafft_darwin_arm64/in' 2024-03-08T07:40:34,925 adding 'abutils/bin/mafft_darwin_arm64/mafft.bat' 2024-03-08T07:40:34,936 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft' 2024-03-08T07:40:35,250 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle' 2024-03-08T07:40:35,412 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap' 2024-03-08T07:40:35,461 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen' 2024-03-08T07:40:37,783 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client' 2024-03-08T07:40:38,715 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast' 2024-03-08T07:40:38,884 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast' 2024-03-08T07:40:39,048 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7' 2024-03-08T07:40:39,205 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre' 2024-03-08T07:40:39,530 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr' 2024-03-08T07:40:39,607 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl' 2024-03-08T07:40:39,740 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter' 2024-03-08T07:40:40,029 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag' 2024-03-08T07:40:40,045 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext' 2024-03-08T07:40:40,204 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance' 2024-03-08T07:40:40,211 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1' 2024-03-08T07:40:40,499 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile' 2024-03-08T07:40:40,511 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1' 2024-03-08T07:40:40,513 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl' 2024-03-08T07:40:40,519 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex' 2024-03-08T07:40:40,817 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist' 2024-03-08T07:40:40,979 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap' 2024-03-08T07:40:41,150 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s' 2024-03-08T07:40:41,472 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair' 2024-03-08T07:40:41,777 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash' 2024-03-08T07:40:42,091 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign' 2024-03-08T07:40:42,229 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq' 2024-03-08T07:40:42,363 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu' 2024-03-08T07:40:42,497 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu' 2024-03-08T07:40:42,653 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score' 2024-03-08T07:40:42,661 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl' 2024-03-08T07:40:42,705 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable' 2024-03-08T07:40:42,991 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore' 2024-03-08T07:40:43,128 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection' 2024-03-08T07:40:43,292 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5' 2024-03-08T07:40:43,594 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast' 2024-03-08T07:40:43,941 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast' 2024-03-08T07:40:43,958 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version' 2024-03-08T07:40:43,961 adding 'abutils/bin/mafft_linux_amd64/mafft.bat' 2024-03-08T07:40:43,972 adding 'abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft' 2024-03-08T07:40:44,228 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle' 2024-03-08T07:40:44,408 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap' 2024-03-08T07:40:44,539 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen' 2024-03-08T07:40:44,548 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments' 2024-03-08T07:40:45,333 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client' 2024-03-08T07:40:45,361 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa' 2024-03-08T07:40:45,621 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast' 2024-03-08T07:40:45,803 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast' 2024-03-08T07:40:45,983 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7' 2024-03-08T07:40:46,161 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre' 2024-03-08T07:40:46,414 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr' 2024-03-08T07:40:46,554 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl' 2024-03-08T07:40:46,722 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter' 2024-03-08T07:40:46,960 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag' 2024-03-08T07:40:46,968 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3' 2024-03-08T07:40:47,071 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext' 2024-03-08T07:40:47,249 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance' 2024-03-08T07:40:47,256 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1' 2024-03-08T07:40:47,488 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile' 2024-03-08T07:40:47,497 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1' 2024-03-08T07:40:47,499 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl' 2024-03-08T07:40:47,601 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex' 2024-03-08T07:40:47,842 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist' 2024-03-08T07:40:48,022 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap' 2024-03-08T07:40:48,212 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s' 2024-03-08T07:40:48,462 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair' 2024-03-08T07:40:48,704 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash' 2024-03-08T07:40:48,951 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign' 2024-03-08T07:40:49,127 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq' 2024-03-08T07:40:49,291 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu' 2024-03-08T07:40:49,459 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu' 2024-03-08T07:40:49,636 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/score' 2024-03-08T07:40:49,645 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl' 2024-03-08T07:40:49,762 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable' 2024-03-08T07:40:49,998 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore' 2024-03-08T07:40:50,169 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection' 2024-03-08T07:40:50,348 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5' 2024-03-08T07:40:50,592 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast' 2024-03-08T07:40:50,855 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast' 2024-03-08T07:40:50,965 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/version' 2024-03-08T07:40:50,970 adding 'abutils/core/__init__.py' 2024-03-08T07:40:50,976 adding 'abutils/core/lineage.py' 2024-03-08T07:40:50,979 adding 'abutils/core/pair.py' 2024-03-08T07:40:50,983 adding 'abutils/core/sequence.py' 2024-03-08T07:40:50,985 adding 'abutils/plots/__init__.py' 2024-03-08T07:40:50,988 adding 'abutils/plots/bar.py' 2024-03-08T07:40:50,990 adding 'abutils/plots/base.py' 2024-03-08T07:40:50,992 adding 'abutils/plots/data.py' 2024-03-08T07:40:50,995 adding 'abutils/plots/donut.py' 2024-03-08T07:40:50,998 adding 'abutils/plots/heatmap.py' 2024-03-08T07:40:51,005 adding 'abutils/plots/kde.py' 2024-03-08T07:40:51,007 adding 'abutils/plots/lineage.py' 2024-03-08T07:40:51,010 adding 'abutils/plots/ridge.py' 2024-03-08T07:40:51,012 adding 'abutils/plots/ring.py' 2024-03-08T07:40:51,015 adding 'abutils/plots/scatter.py' 2024-03-08T07:40:51,017 adding 'abutils/plots/summary.py' 2024-03-08T07:40:51,018 adding 'abutils/plots/utils.py' 2024-03-08T07:40:51,020 adding 'abutils/plots/mixins/__init__.py' 2024-03-08T07:40:51,021 adding 'abutils/plots/mixins/hue.py' 2024-03-08T07:40:51,023 adding 'abutils/plots/models/__init__.py' 2024-03-08T07:40:51,026 adding 'abutils/plots/models/data.py' 2024-03-08T07:40:51,028 adding 'abutils/tests/__init__.py' 2024-03-08T07:40:51,030 adding 'abutils/tests/test_alignment.py' 2024-03-08T07:40:51,032 adding 'abutils/tests/test_clonify.py' 2024-03-08T07:40:51,034 adding 'abutils/tests/test_cluster.py' 2024-03-08T07:40:51,035 adding 'abutils/tests/test_color.py' 2024-03-08T07:40:51,037 adding 'abutils/tests/test_pair.py' 2024-03-08T07:40:51,039 adding 'abutils/tests/test_phylo.py' 2024-03-08T07:40:51,040 adding 'abutils/tests/test_sequence.py' 2024-03-08T07:40:51,042 adding 'abutils/tests/test_utilities.py' 2024-03-08T07:40:51,044 adding 'abutils/tools/__init__.py' 2024-03-08T07:40:51,050 adding 'abutils/tools/alignment.py' 2024-03-08T07:40:51,053 adding 'abutils/tools/clonify.py' 2024-03-08T07:40:51,057 adding 'abutils/tools/cluster.py' 2024-03-08T07:40:51,061 adding 'abutils/tools/phylo.py' 2024-03-08T07:40:51,064 adding 'abutils/tools/similarity.py' 2024-03-08T07:40:51,067 adding 'abutils/utils/__init__.py' 2024-03-08T07:40:51,074 adding 'abutils/utils/alignment.py' 2024-03-08T07:40:51,076 adding 'abutils/utils/circos.py' 2024-03-08T07:40:51,080 adding 'abutils/utils/cluster.py' 2024-03-08T07:40:51,082 adding 'abutils/utils/codons.py' 2024-03-08T07:40:51,084 adding 'abutils/utils/color.py' 2024-03-08T07:40:51,086 adding 'abutils/utils/convert.py' 2024-03-08T07:40:51,088 adding 'abutils/utils/database.py' 2024-03-08T07:40:51,089 adding 'abutils/utils/decorators.py' 2024-03-08T07:40:51,091 adding 'abutils/utils/germlines.py' 2024-03-08T07:40:51,093 adding 'abutils/utils/jobs.py' 2024-03-08T07:40:51,095 adding 'abutils/utils/log.py' 2024-03-08T07:40:51,097 adding 'abutils/utils/mongodb.py' 2024-03-08T07:40:51,102 adding 'abutils/utils/phylogeny.py' 2024-03-08T07:40:51,103 adding 'abutils/utils/pipeline.py' 2024-03-08T07:40:51,105 adding 'abutils/utils/progbar.py' 2024-03-08T07:40:51,107 adding 'abutils/utils/s3.py' 2024-03-08T07:40:51,109 adding 'abutils/utils/seqio.py' 2024-03-08T07:40:51,111 adding 'abutils/utils/ssh_tunnel.py' 2024-03-08T07:40:51,112 adding 'abutils/utils/utilities.py' 2024-03-08T07:40:51,114 adding 'abutils/utils/matrices/blosum62' 2024-03-08T07:40:51,116 adding 'abutils/utils/matrices/match1mismatch0' 2024-03-08T07:40:51,118 adding 'abutils/utils/matrices/match3mismatch2' 2024-03-08T07:40:51,120 adding 'abutils-0.4.16.dist-info/LICENSE' 2024-03-08T07:40:51,122 adding 'abutils-0.4.16.dist-info/METADATA' 2024-03-08T07:40:51,123 adding 'abutils-0.4.16.dist-info/WHEEL' 2024-03-08T07:40:51,125 adding 'abutils-0.4.16.dist-info/top_level.txt' 2024-03-08T07:40:51,128 adding 'abutils-0.4.16.dist-info/RECORD' 2024-03-08T07:40:51,468 removing build/bdist.linux-armv7l/wheel 2024-03-08T07:40:51,717 Building wheel for abutils (setup.py): finished with status 'done' 2024-03-08T07:40:53,758 Created wheel for abutils: filename=abutils-0.4.16-py3-none-any.whl size=94383929 sha256=bfe77326744bbec2b055c61dda545ab517a46e913ce9fb846d5a675ba4370e4c 2024-03-08T07:40:53,760 Stored in directory: /tmp/pip-ephem-wheel-cache-45p3fnfw/wheels/01/89/2f/c6224cf05eda845ec4598d29e083faf2bc04661ef1cce54739 2024-03-08T07:40:53,805 Successfully built abutils 2024-03-08T07:40:56,188 Removed build tracker: '/tmp/pip-build-tracker-xr_8h8fh'