2024-03-08T16:09:09,794 Created temporary directory: /tmp/pip-build-tracker-2t5vlsd9 2024-03-08T16:09:09,795 Initialized build tracking at /tmp/pip-build-tracker-2t5vlsd9 2024-03-08T16:09:09,796 Created build tracker: /tmp/pip-build-tracker-2t5vlsd9 2024-03-08T16:09:09,796 Entered build tracker: /tmp/pip-build-tracker-2t5vlsd9 2024-03-08T16:09:09,797 Created temporary directory: /tmp/pip-wheel-05f7ym2g 2024-03-08T16:09:09,801 Created temporary directory: /tmp/pip-ephem-wheel-cache-yzu_9lr5 2024-03-08T16:09:09,824 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-08T16:09:09,827 2 location(s) to search for versions of biostoch: 2024-03-08T16:09:09,827 * https://pypi.org/simple/biostoch/ 2024-03-08T16:09:09,827 * https://www.piwheels.org/simple/biostoch/ 2024-03-08T16:09:09,828 Fetching project page and analyzing links: https://pypi.org/simple/biostoch/ 2024-03-08T16:09:09,829 Getting page https://pypi.org/simple/biostoch/ 2024-03-08T16:09:09,830 Found index url https://pypi.org/simple/ 2024-03-08T16:09:09,973 Fetched page https://pypi.org/simple/biostoch/ as application/vnd.pypi.simple.v1+json 2024-03-08T16:09:09,975 Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/d4/6b/15f74c07205ef7d82d679617816430d3f08c0ac2349a12d0aec83a1af532/BioStoch-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biostoch/) 2024-03-08T16:09:09,976 Found link https://files.pythonhosted.org/packages/bd/10/cccb1779898ee3fabe47b5c3873d41704f8eb0c2768248bbaa7519ae1ff4/BioStoch-0.0.1.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.1 2024-03-08T16:09:09,977 Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/ca/8e/2cf3a1fed2f71feb387ee096212565f5c23db60d31a10d6fbab3738f616a/biostoch-0.0.2-py3-none-any.whl (from https://pypi.org/simple/biostoch/) 2024-03-08T16:09:09,977 Found link https://files.pythonhosted.org/packages/23/83/dc73d701e3210f6cc850b5da286e2a5ff4cba49e431d39b7be1687cd6646/biostoch-0.0.2.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.2 2024-03-08T16:09:09,978 Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/23/29/b221e963dd5d9525e53c63a384ddb0d67fc83f6b9dc9f7e381793c0adf94/biostoch-0.0.3-py3-none-any.whl (from https://pypi.org/simple/biostoch/) 2024-03-08T16:09:09,979 Found link https://files.pythonhosted.org/packages/19/7f/9a4b0e60ff44dfaf136cd9f2ac443085070b0e4c456f21c0eb4857e294ad/biostoch-0.0.3.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.3 2024-03-08T16:09:09,980 Fetching project page and analyzing links: https://www.piwheels.org/simple/biostoch/ 2024-03-08T16:09:09,981 Getting page https://www.piwheels.org/simple/biostoch/ 2024-03-08T16:09:09,982 Found index url https://www.piwheels.org/simple/ 2024-03-08T16:09:10,251 Fetched page https://www.piwheels.org/simple/biostoch/ as text/html 2024-03-08T16:09:10,253 Skipping link: No binaries permitted for biostoch: https://www.piwheels.org/simple/biostoch/biostoch-0.0.2-py3-none-any.whl#sha256=a9f33a40949a911088beab084697ddcda74a7f7d49d10d928d06d37eff16ceb4 (from https://www.piwheels.org/simple/biostoch/) 2024-03-08T16:09:10,253 Skipping link: No binaries permitted for biostoch: https://www.piwheels.org/simple/biostoch/BioStoch-0.0.1-py3-none-any.whl#sha256=98495e596ff47e9cc21925b3db289743a32259b0ab02fd6f49dce2593b70a2c2 (from https://www.piwheels.org/simple/biostoch/) 2024-03-08T16:09:10,254 Skipping link: not a file: https://www.piwheels.org/simple/biostoch/ 2024-03-08T16:09:10,255 Skipping link: not a file: https://pypi.org/simple/biostoch/ 2024-03-08T16:09:10,274 Given no hashes to check 1 links for project 'biostoch': discarding no candidates 2024-03-08T16:09:10,292 Collecting biostoch==0.0.3 2024-03-08T16:09:10,295 Created temporary directory: /tmp/pip-unpack-u79i9dpr 2024-03-08T16:09:10,511 Downloading biostoch-0.0.3.tar.gz (12 kB) 2024-03-08T16:09:10,805 Added biostoch==0.0.3 from https://files.pythonhosted.org/packages/19/7f/9a4b0e60ff44dfaf136cd9f2ac443085070b0e4c456f21c0eb4857e294ad/biostoch-0.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-2t5vlsd9' 2024-03-08T16:09:10,807 Running setup.py (path:/tmp/pip-wheel-05f7ym2g/biostoch_8e68e360356649cdbbeb50957d2415c7/setup.py) egg_info for package biostoch 2024-03-08T16:09:10,809 Created temporary directory: /tmp/pip-pip-egg-info-23t2h581 2024-03-08T16:09:10,810 Preparing metadata (setup.py): started 2024-03-08T16:09:10,811 Running command python setup.py egg_info 2024-03-08T16:09:12,408 running egg_info 2024-03-08T16:09:12,410 creating /tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info 2024-03-08T16:09:12,437 writing /tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/PKG-INFO 2024-03-08T16:09:12,441 writing dependency_links to /tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/dependency_links.txt 2024-03-08T16:09:12,443 writing requirements to /tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/requires.txt 2024-03-08T16:09:12,444 writing top-level names to /tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/top_level.txt 2024-03-08T16:09:12,446 writing manifest file '/tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/SOURCES.txt' 2024-03-08T16:09:12,527 reading manifest file '/tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/SOURCES.txt' 2024-03-08T16:09:12,529 reading manifest template 'MANIFEST.in' 2024-03-08T16:09:12,533 adding license file 'LICENSE' 2024-03-08T16:09:12,535 writing manifest file '/tmp/pip-pip-egg-info-23t2h581/biostoch.egg-info/SOURCES.txt' 2024-03-08T16:09:12,644 Preparing metadata (setup.py): finished with status 'done' 2024-03-08T16:09:12,649 Source in /tmp/pip-wheel-05f7ym2g/biostoch_8e68e360356649cdbbeb50957d2415c7 has version 0.0.3, which satisfies requirement biostoch==0.0.3 from https://files.pythonhosted.org/packages/19/7f/9a4b0e60ff44dfaf136cd9f2ac443085070b0e4c456f21c0eb4857e294ad/biostoch-0.0.3.tar.gz 2024-03-08T16:09:12,650 Removed biostoch==0.0.3 from https://files.pythonhosted.org/packages/19/7f/9a4b0e60ff44dfaf136cd9f2ac443085070b0e4c456f21c0eb4857e294ad/biostoch-0.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-2t5vlsd9' 2024-03-08T16:09:12,654 Created temporary directory: /tmp/pip-unpack-3fg0gijx 2024-03-08T16:09:12,655 Created temporary directory: /tmp/pip-unpack-9qbs134r 2024-03-08T16:09:12,661 Building wheels for collected packages: biostoch 2024-03-08T16:09:12,665 Created temporary directory: /tmp/pip-wheel-yqmf_1o4 2024-03-08T16:09:12,665 Building wheel for biostoch (setup.py): started 2024-03-08T16:09:12,667 Destination directory: /tmp/pip-wheel-yqmf_1o4 2024-03-08T16:09:12,667 Running command python setup.py bdist_wheel 2024-03-08T16:09:13,721 running bdist_wheel 2024-03-08T16:09:13,821 running build 2024-03-08T16:09:13,822 running build_py 2024-03-08T16:09:13,852 creating build 2024-03-08T16:09:13,852 creating build/lib 2024-03-08T16:09:13,853 creating build/lib/biostoch 2024-03-08T16:09:13,855 copying biostoch/ssa.py -> build/lib/biostoch 2024-03-08T16:09:13,859 copying biostoch/tau_leaping.py -> build/lib/biostoch 2024-03-08T16:09:13,862 copying biostoch/cle.py -> build/lib/biostoch 2024-03-08T16:09:13,864 copying biostoch/__init__.py -> build/lib/biostoch 2024-03-08T16:09:13,867 copying biostoch/model.py -> build/lib/biostoch 2024-03-08T16:09:13,869 copying biostoch/__main__.py -> build/lib/biostoch 2024-03-08T16:09:13,871 copying biostoch/ode.py -> build/lib/biostoch 2024-03-08T16:09:13,874 copying biostoch/visualization.py -> build/lib/biostoch 2024-03-08T16:09:13,876 running egg_info 2024-03-08T16:09:13,936 writing biostoch.egg-info/PKG-INFO 2024-03-08T16:09:13,940 writing dependency_links to biostoch.egg-info/dependency_links.txt 2024-03-08T16:09:13,942 writing requirements to biostoch.egg-info/requires.txt 2024-03-08T16:09:13,943 writing top-level names to biostoch.egg-info/top_level.txt 2024-03-08T16:09:13,972 reading manifest file 'biostoch.egg-info/SOURCES.txt' 2024-03-08T16:09:13,974 reading manifest template 'MANIFEST.in' 2024-03-08T16:09:13,981 adding license file 'LICENSE' 2024-03-08T16:09:13,983 writing manifest file 'biostoch.egg-info/SOURCES.txt' 2024-03-08T16:09:14,012 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-08T16:09:14,013 !! 2024-03-08T16:09:14,014 ******************************************************************************** 2024-03-08T16:09:14,015 Please avoid running ``setup.py`` directly. 2024-03-08T16:09:14,015 Instead, use pypa/build, pypa/installer or other 2024-03-08T16:09:14,015 standards-based tools. 2024-03-08T16:09:14,016 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-08T16:09:14,017 ******************************************************************************** 2024-03-08T16:09:14,018 !! 2024-03-08T16:09:14,018 self.initialize_options() 2024-03-08T16:09:14,041 installing to build/bdist.linux-armv7l/wheel 2024-03-08T16:09:14,042 running install 2024-03-08T16:09:14,067 running install_lib 2024-03-08T16:09:14,092 creating build/bdist.linux-armv7l 2024-03-08T16:09:14,093 creating build/bdist.linux-armv7l/wheel 2024-03-08T16:09:14,095 creating build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,097 copying build/lib/biostoch/ssa.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,100 copying build/lib/biostoch/tau_leaping.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,103 copying build/lib/biostoch/cle.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,106 copying build/lib/biostoch/__init__.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,108 copying build/lib/biostoch/model.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,111 copying build/lib/biostoch/__main__.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,114 copying build/lib/biostoch/ode.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,116 copying build/lib/biostoch/visualization.py -> build/bdist.linux-armv7l/wheel/biostoch 2024-03-08T16:09:14,119 running install_egg_info 2024-03-08T16:09:14,150 Copying biostoch.egg-info to build/bdist.linux-armv7l/wheel/biostoch-0.0.3-py3.11.egg-info 2024-03-08T16:09:14,161 running install_scripts 2024-03-08T16:09:14,176 creating build/bdist.linux-armv7l/wheel/biostoch-0.0.3.dist-info/WHEEL 2024-03-08T16:09:14,179 creating '/tmp/pip-wheel-yqmf_1o4/biostoch-0.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-08T16:09:14,182 adding 'biostoch/__init__.py' 2024-03-08T16:09:14,184 adding 'biostoch/__main__.py' 2024-03-08T16:09:14,185 adding 'biostoch/cle.py' 2024-03-08T16:09:14,187 adding 'biostoch/model.py' 2024-03-08T16:09:14,189 adding 'biostoch/ode.py' 2024-03-08T16:09:14,191 adding 'biostoch/ssa.py' 2024-03-08T16:09:14,193 adding 'biostoch/tau_leaping.py' 2024-03-08T16:09:14,195 adding 'biostoch/visualization.py' 2024-03-08T16:09:14,197 adding 'biostoch-0.0.3.dist-info/LICENSE' 2024-03-08T16:09:14,199 adding 'biostoch-0.0.3.dist-info/METADATA' 2024-03-08T16:09:14,200 adding 'biostoch-0.0.3.dist-info/WHEEL' 2024-03-08T16:09:14,201 adding 'biostoch-0.0.3.dist-info/top_level.txt' 2024-03-08T16:09:14,202 adding 'biostoch-0.0.3.dist-info/RECORD' 2024-03-08T16:09:14,204 removing build/bdist.linux-armv7l/wheel 2024-03-08T16:09:14,340 Building wheel for biostoch (setup.py): finished with status 'done' 2024-03-08T16:09:14,343 Created wheel for biostoch: filename=biostoch-0.0.3-py3-none-any.whl size=14050 sha256=3b189b2f50991a63ec94dbcc0f89c93ede46de90a2c169bc4b7d28b6ef39a75a 2024-03-08T16:09:14,344 Stored in directory: /tmp/pip-ephem-wheel-cache-yzu_9lr5/wheels/46/b2/bc/b1f56d8addc2de047f3a88a93bba93d871b2006a147e9a969d 2024-03-08T16:09:14,354 Successfully built biostoch 2024-03-08T16:09:14,359 Removed build tracker: '/tmp/pip-build-tracker-2t5vlsd9'