2024-03-08T21:42:42,601 Created temporary directory: /tmp/pip-build-tracker-s5pff7m5
2024-03-08T21:42:42,603 Initialized build tracking at /tmp/pip-build-tracker-s5pff7m5
2024-03-08T21:42:42,603 Created build tracker: /tmp/pip-build-tracker-s5pff7m5
2024-03-08T21:42:42,604 Entered build tracker: /tmp/pip-build-tracker-s5pff7m5
2024-03-08T21:42:42,604 Created temporary directory: /tmp/pip-wheel-xoltjfk3
2024-03-08T21:42:42,608 Created temporary directory: /tmp/pip-ephem-wheel-cache-7soyv5mb
2024-03-08T21:42:42,630 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-08T21:42:42,633 2 location(s) to search for versions of biostoch:
2024-03-08T21:42:42,633 * https://pypi.org/simple/biostoch/
2024-03-08T21:42:42,633 * https://www.piwheels.org/simple/biostoch/
2024-03-08T21:42:42,634 Fetching project page and analyzing links: https://pypi.org/simple/biostoch/
2024-03-08T21:42:42,635 Getting page https://pypi.org/simple/biostoch/
2024-03-08T21:42:42,636 Found index url https://pypi.org/simple/
2024-03-08T21:42:42,865 Fetched page https://pypi.org/simple/biostoch/ as application/vnd.pypi.simple.v1+json
2024-03-08T21:42:42,868   Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/d4/6b/15f74c07205ef7d82d679617816430d3f08c0ac2349a12d0aec83a1af532/BioStoch-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biostoch/)
2024-03-08T21:42:42,869   Found link https://files.pythonhosted.org/packages/bd/10/cccb1779898ee3fabe47b5c3873d41704f8eb0c2768248bbaa7519ae1ff4/BioStoch-0.0.1.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.1
2024-03-08T21:42:42,870   Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/ca/8e/2cf3a1fed2f71feb387ee096212565f5c23db60d31a10d6fbab3738f616a/biostoch-0.0.2-py3-none-any.whl (from https://pypi.org/simple/biostoch/)
2024-03-08T21:42:42,870   Found link https://files.pythonhosted.org/packages/23/83/dc73d701e3210f6cc850b5da286e2a5ff4cba49e431d39b7be1687cd6646/biostoch-0.0.2.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.2
2024-03-08T21:42:42,871   Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/23/29/b221e963dd5d9525e53c63a384ddb0d67fc83f6b9dc9f7e381793c0adf94/biostoch-0.0.3-py3-none-any.whl (from https://pypi.org/simple/biostoch/)
2024-03-08T21:42:42,871   Found link https://files.pythonhosted.org/packages/19/7f/9a4b0e60ff44dfaf136cd9f2ac443085070b0e4c456f21c0eb4857e294ad/biostoch-0.0.3.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.3
2024-03-08T21:42:42,872   Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/d0/de/47248a42eebf0495defc69a8ee5502841bca9d00f7b06db875ab134aaae0/biostoch-0.0.4-py3-none-any.whl (from https://pypi.org/simple/biostoch/)
2024-03-08T21:42:42,873   Found link https://files.pythonhosted.org/packages/a8/ff/4c1484d48476bff0fb1ac63bd2422e00430655ea853bb3e6d0a2f3a250e4/biostoch-0.0.4.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.4
2024-03-08T21:42:42,874   Skipping link: No binaries permitted for biostoch: https://files.pythonhosted.org/packages/0a/e6/b3edf6084c0903d83357a62f75a2f6c49a2fba0f34da1fb52933f71e77c0/biostoch-0.0.5-py3-none-any.whl (from https://pypi.org/simple/biostoch/)
2024-03-08T21:42:42,874   Found link https://files.pythonhosted.org/packages/43/19/ff63b4348ec5ca3af670bd1a7c9d45c202b66ab47b0866eb59aa0e657980/biostoch-0.0.5.tar.gz (from https://pypi.org/simple/biostoch/), version: 0.0.5
2024-03-08T21:42:42,875 Fetching project page and analyzing links: https://www.piwheels.org/simple/biostoch/
2024-03-08T21:42:42,876 Getting page https://www.piwheels.org/simple/biostoch/
2024-03-08T21:42:42,877 Found index url https://www.piwheels.org/simple/
2024-03-08T21:42:43,308 Fetched page https://www.piwheels.org/simple/biostoch/ as text/html
2024-03-08T21:42:43,310   Skipping link: No binaries permitted for biostoch: https://www.piwheels.org/simple/biostoch/biostoch-0.0.3-py3-none-any.whl#sha256=3b189b2f50991a63ec94dbcc0f89c93ede46de90a2c169bc4b7d28b6ef39a75a (from https://www.piwheels.org/simple/biostoch/)
2024-03-08T21:42:43,310   Skipping link: No binaries permitted for biostoch: https://www.piwheels.org/simple/biostoch/biostoch-0.0.2-py3-none-any.whl#sha256=a9f33a40949a911088beab084697ddcda74a7f7d49d10d928d06d37eff16ceb4 (from https://www.piwheels.org/simple/biostoch/)
2024-03-08T21:42:43,311   Skipping link: No binaries permitted for biostoch: https://www.piwheels.org/simple/biostoch/BioStoch-0.0.1-py3-none-any.whl#sha256=98495e596ff47e9cc21925b3db289743a32259b0ab02fd6f49dce2593b70a2c2 (from https://www.piwheels.org/simple/biostoch/)
2024-03-08T21:42:43,312 Skipping link: not a file: https://www.piwheels.org/simple/biostoch/
2024-03-08T21:42:43,312 Skipping link: not a file: https://pypi.org/simple/biostoch/
2024-03-08T21:42:43,331 Given no hashes to check 1 links for project 'biostoch': discarding no candidates
2024-03-08T21:42:43,348 Collecting biostoch==0.0.4
2024-03-08T21:42:43,350   Created temporary directory: /tmp/pip-unpack-m55ffqqy
2024-03-08T21:42:43,567   Downloading biostoch-0.0.4.tar.gz (12 kB)
2024-03-08T21:42:43,628   Added biostoch==0.0.4 from https://files.pythonhosted.org/packages/a8/ff/4c1484d48476bff0fb1ac63bd2422e00430655ea853bb3e6d0a2f3a250e4/biostoch-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-s5pff7m5'
2024-03-08T21:42:43,631   Running setup.py (path:/tmp/pip-wheel-xoltjfk3/biostoch_4be1c2919bf84fcbab1479fcc3d619b8/setup.py) egg_info for package biostoch
2024-03-08T21:42:43,632   Created temporary directory: /tmp/pip-pip-egg-info-8a5g2fjj
2024-03-08T21:42:43,632   Preparing metadata (setup.py): started
2024-03-08T21:42:43,634   Running command python setup.py egg_info
2024-03-08T21:42:44,726   running egg_info
2024-03-08T21:42:44,728   creating /tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info
2024-03-08T21:42:44,752   writing /tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/PKG-INFO
2024-03-08T21:42:44,756   writing dependency_links to /tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/dependency_links.txt
2024-03-08T21:42:44,757   writing requirements to /tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/requires.txt
2024-03-08T21:42:44,758   writing top-level names to /tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/top_level.txt
2024-03-08T21:42:44,760   writing manifest file '/tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/SOURCES.txt'
2024-03-08T21:42:44,836   reading manifest file '/tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/SOURCES.txt'
2024-03-08T21:42:44,837   reading manifest template 'MANIFEST.in'
2024-03-08T21:42:44,842   adding license file 'LICENSE'
2024-03-08T21:42:44,844   writing manifest file '/tmp/pip-pip-egg-info-8a5g2fjj/biostoch.egg-info/SOURCES.txt'
2024-03-08T21:42:44,957   Preparing metadata (setup.py): finished with status 'done'
2024-03-08T21:42:44,961   Source in /tmp/pip-wheel-xoltjfk3/biostoch_4be1c2919bf84fcbab1479fcc3d619b8 has version 0.0.4, which satisfies requirement biostoch==0.0.4 from https://files.pythonhosted.org/packages/a8/ff/4c1484d48476bff0fb1ac63bd2422e00430655ea853bb3e6d0a2f3a250e4/biostoch-0.0.4.tar.gz
2024-03-08T21:42:44,962   Removed biostoch==0.0.4 from https://files.pythonhosted.org/packages/a8/ff/4c1484d48476bff0fb1ac63bd2422e00430655ea853bb3e6d0a2f3a250e4/biostoch-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-s5pff7m5'
2024-03-08T21:42:44,967 Created temporary directory: /tmp/pip-unpack-toi60ggk
2024-03-08T21:42:44,968 Created temporary directory: /tmp/pip-unpack-vgykraoa
2024-03-08T21:42:44,973 Building wheels for collected packages: biostoch
2024-03-08T21:42:44,977   Created temporary directory: /tmp/pip-wheel-zpvvhg1a
2024-03-08T21:42:44,977   Building wheel for biostoch (setup.py): started
2024-03-08T21:42:44,979   Destination directory: /tmp/pip-wheel-zpvvhg1a
2024-03-08T21:42:44,980   Running command python setup.py bdist_wheel
2024-03-08T21:42:45,981   running bdist_wheel
2024-03-08T21:42:46,075   running build
2024-03-08T21:42:46,075   running build_py
2024-03-08T21:42:46,102   creating build
2024-03-08T21:42:46,102   creating build/lib
2024-03-08T21:42:46,103   creating build/lib/biostoch
2024-03-08T21:42:46,104   copying biostoch/tau_leaping.py -> build/lib/biostoch
2024-03-08T21:42:46,107   copying biostoch/model.py -> build/lib/biostoch
2024-03-08T21:42:46,109   copying biostoch/ssa.py -> build/lib/biostoch
2024-03-08T21:42:46,111   copying biostoch/visualization.py -> build/lib/biostoch
2024-03-08T21:42:46,113   copying biostoch/__init__.py -> build/lib/biostoch
2024-03-08T21:42:46,114   copying biostoch/cle.py -> build/lib/biostoch
2024-03-08T21:42:46,116   copying biostoch/__main__.py -> build/lib/biostoch
2024-03-08T21:42:46,118   copying biostoch/ode.py -> build/lib/biostoch
2024-03-08T21:42:46,119   running egg_info
2024-03-08T21:42:46,174   writing biostoch.egg-info/PKG-INFO
2024-03-08T21:42:46,177   writing dependency_links to biostoch.egg-info/dependency_links.txt
2024-03-08T21:42:46,179   writing requirements to biostoch.egg-info/requires.txt
2024-03-08T21:42:46,180   writing top-level names to biostoch.egg-info/top_level.txt
2024-03-08T21:42:46,207   reading manifest file 'biostoch.egg-info/SOURCES.txt'
2024-03-08T21:42:46,209   reading manifest template 'MANIFEST.in'
2024-03-08T21:42:46,215   adding license file 'LICENSE'
2024-03-08T21:42:46,217   writing manifest file 'biostoch.egg-info/SOURCES.txt'
2024-03-08T21:42:46,243   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-03-08T21:42:46,244   !!

2024-03-08T21:42:46,245           ********************************************************************************
2024-03-08T21:42:46,245           Please avoid running ``setup.py`` directly.
2024-03-08T21:42:46,246           Instead, use pypa/build, pypa/installer or other
2024-03-08T21:42:46,246           standards-based tools.

2024-03-08T21:42:46,247           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-03-08T21:42:46,248           ********************************************************************************

2024-03-08T21:42:46,249   !!
2024-03-08T21:42:46,249     self.initialize_options()
2024-03-08T21:42:46,268   installing to build/bdist.linux-armv7l/wheel
2024-03-08T21:42:46,269   running install
2024-03-08T21:42:46,292   running install_lib
2024-03-08T21:42:46,316   creating build/bdist.linux-armv7l
2024-03-08T21:42:46,317   creating build/bdist.linux-armv7l/wheel
2024-03-08T21:42:46,318   creating build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,319   copying build/lib/biostoch/tau_leaping.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,321   copying build/lib/biostoch/model.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,323   copying build/lib/biostoch/ssa.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,325   copying build/lib/biostoch/visualization.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,328   copying build/lib/biostoch/__init__.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,329   copying build/lib/biostoch/cle.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,331   copying build/lib/biostoch/__main__.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,333   copying build/lib/biostoch/ode.py -> build/bdist.linux-armv7l/wheel/biostoch
2024-03-08T21:42:46,335   running install_egg_info
2024-03-08T21:42:46,365   Copying biostoch.egg-info to build/bdist.linux-armv7l/wheel/biostoch-0.0.4-py3.11.egg-info
2024-03-08T21:42:46,375   running install_scripts
2024-03-08T21:42:46,388   creating build/bdist.linux-armv7l/wheel/biostoch-0.0.4.dist-info/WHEEL
2024-03-08T21:42:46,390   creating '/tmp/pip-wheel-zpvvhg1a/biostoch-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-08T21:42:46,392   adding 'biostoch/__init__.py'
2024-03-08T21:42:46,393   adding 'biostoch/__main__.py'
2024-03-08T21:42:46,395   adding 'biostoch/cle.py'
2024-03-08T21:42:46,397   adding 'biostoch/model.py'
2024-03-08T21:42:46,399   adding 'biostoch/ode.py'
2024-03-08T21:42:46,400   adding 'biostoch/ssa.py'
2024-03-08T21:42:46,402   adding 'biostoch/tau_leaping.py'
2024-03-08T21:42:46,404   adding 'biostoch/visualization.py'
2024-03-08T21:42:46,406   adding 'biostoch-0.0.4.dist-info/LICENSE'
2024-03-08T21:42:46,407   adding 'biostoch-0.0.4.dist-info/METADATA'
2024-03-08T21:42:46,408   adding 'biostoch-0.0.4.dist-info/WHEEL'
2024-03-08T21:42:46,409   adding 'biostoch-0.0.4.dist-info/top_level.txt'
2024-03-08T21:42:46,409   adding 'biostoch-0.0.4.dist-info/RECORD'
2024-03-08T21:42:46,411   removing build/bdist.linux-armv7l/wheel
2024-03-08T21:42:46,525   Building wheel for biostoch (setup.py): finished with status 'done'
2024-03-08T21:42:46,527   Created wheel for biostoch: filename=biostoch-0.0.4-py3-none-any.whl size=14118 sha256=afb95586d36dd9af701d5f9bc99adc8fb07684349210596c87767589d3e08a19
2024-03-08T21:42:46,528   Stored in directory: /tmp/pip-ephem-wheel-cache-7soyv5mb/wheels/fd/37/c5/637065e048b4da22266f68b8b6020d92822901967f206d4408
2024-03-08T21:42:46,538 Successfully built biostoch
2024-03-08T21:42:46,542 Removed build tracker: '/tmp/pip-build-tracker-s5pff7m5'