2024-03-10T18:14:27,108 Created temporary directory: /tmp/pip-build-tracker-xs91t1_l 2024-03-10T18:14:27,109 Initialized build tracking at /tmp/pip-build-tracker-xs91t1_l 2024-03-10T18:14:27,110 Created build tracker: /tmp/pip-build-tracker-xs91t1_l 2024-03-10T18:14:27,110 Entered build tracker: /tmp/pip-build-tracker-xs91t1_l 2024-03-10T18:14:27,111 Created temporary directory: /tmp/pip-wheel-cvd_gr2j 2024-03-10T18:14:27,114 Created temporary directory: /tmp/pip-ephem-wheel-cache-zaa487x3 2024-03-10T18:14:27,136 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-10T18:14:27,140 2 location(s) to search for versions of crispector2: 2024-03-10T18:14:27,140 * https://pypi.org/simple/crispector2/ 2024-03-10T18:14:27,140 * https://www.piwheels.org/simple/crispector2/ 2024-03-10T18:14:27,140 Fetching project page and analyzing links: https://pypi.org/simple/crispector2/ 2024-03-10T18:14:27,141 Getting page https://pypi.org/simple/crispector2/ 2024-03-10T18:14:27,143 Found index url https://pypi.org/simple/ 2024-03-10T18:14:27,364 Fetched page https://pypi.org/simple/crispector2/ as application/vnd.pypi.simple.v1+json 2024-03-10T18:14:27,366 Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/bb/5a/50eaff3c829e6d5acc61fee35051c0b9f837b947f831b80eebd47f50ceda/crispector2-2.0.7-py2.py3-none-any.whl (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7) 2024-03-10T18:14:27,367 Found link https://files.pythonhosted.org/packages/db/06/4973e211590ec29330f4209fe4db7e2ebe9261d3df3cb9672741338e61db/crispector2-2.0.7.tar.gz (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7), version: 2.0.7 2024-03-10T18:14:27,368 Skipping link: No binaries permitted for crispector2: https://files.pythonhosted.org/packages/46/d1/0f612c417fb2d66d948300a517d1686d085e6a4a18db3948a230b3d55e7e/crispector2-2.0.8-py2.py3-none-any.whl (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7) 2024-03-10T18:14:27,368 Found link https://files.pythonhosted.org/packages/6d/79/3a27ec43b377e9665b18c78951f8902c640e4046bdbe8e255f06b0e9da7b/crispector2-2.0.8.tar.gz (from https://pypi.org/simple/crispector2/) (requires-python:>=3.7), version: 2.0.8 2024-03-10T18:14:27,369 Fetching project page and analyzing links: https://www.piwheels.org/simple/crispector2/ 2024-03-10T18:14:27,370 Getting page https://www.piwheels.org/simple/crispector2/ 2024-03-10T18:14:27,371 Found index url https://www.piwheels.org/simple/ 2024-03-10T18:14:27,593 Fetched page https://www.piwheels.org/simple/crispector2/ as text/html 2024-03-10T18:14:27,594 Skipping link: No binaries permitted for crispector2: https://www.piwheels.org/simple/crispector2/crispector2-2.0.7-py2.py3-none-any.whl#sha256=6ff640c1b6141b08057f68d1f3c5f51ee814fdd573a7af2c20b2d37d71321f9f (from https://www.piwheels.org/simple/crispector2/) (requires-python:>=3.7) 2024-03-10T18:14:27,595 Skipping link: not a file: https://www.piwheels.org/simple/crispector2/ 2024-03-10T18:14:27,596 Skipping link: not a file: https://pypi.org/simple/crispector2/ 2024-03-10T18:14:27,614 Given no hashes to check 1 links for project 'crispector2': discarding no candidates 2024-03-10T18:14:27,632 Collecting crispector2==2.0.8 2024-03-10T18:14:27,634 Created temporary directory: /tmp/pip-unpack-020_zpw7 2024-03-10T18:14:27,961 Downloading crispector2-2.0.8.tar.gz (429 kB) 2024-03-10T18:14:28,222 Added crispector2==2.0.8 from https://files.pythonhosted.org/packages/6d/79/3a27ec43b377e9665b18c78951f8902c640e4046bdbe8e255f06b0e9da7b/crispector2-2.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-xs91t1_l' 2024-03-10T18:14:28,227 Created temporary directory: /tmp/pip-build-env-zclnfsod 2024-03-10T18:14:28,232 Installing build dependencies: started 2024-03-10T18:14:28,233 Running command pip subprocess to install build dependencies 2024-03-10T18:14:29,421 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-10T18:14:30,169 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-10T18:14:31,674 Collecting setuptools>=59.6.0 2024-03-10T18:14:31,689 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.1.1-py3-none-any.whl (819 kB) 2024-03-10T18:14:31,937 Collecting wheel 2024-03-10T18:14:31,968 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-03-10T18:14:34,600 Installing collected packages: wheel, setuptools 2024-03-10T18:14:34,849 Creating /tmp/pip-build-env-zclnfsod/overlay/local/bin 2024-03-10T18:14:34,851 changing mode of /tmp/pip-build-env-zclnfsod/overlay/local/bin/wheel to 755 2024-03-10T18:14:37,373 Successfully installed setuptools-69.1.1 wheel-0.42.0 2024-03-10T18:14:38,089 Installing build dependencies: finished with status 'done' 2024-03-10T18:14:38,092 Getting requirements to build wheel: started 2024-03-10T18:14:38,093 Running command Getting requirements to build wheel 2024-03-10T18:14:38,621 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `description` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:38,622 !! 2024-03-10T18:14:38,623 ******************************************************************************** 2024-03-10T18:14:38,623 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:38,624 `description = 'CRISPECTOR2 - Genome Editing Analysis Tool, with allele extension'` 2024-03-10T18:14:38,625 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:38,626 consider this value unless `description` is listed as `dynamic`. 2024-03-10T18:14:38,627 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:38,628 To prevent this problem, you can list `description` under `dynamic` or alternatively 2024-03-10T18:14:38,628 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:38,629 configuration. 2024-03-10T18:14:38,629 ******************************************************************************** 2024-03-10T18:14:38,630 !! 2024-03-10T18:14:38,631 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:38,631 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `authors` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:38,632 !! 2024-03-10T18:14:38,633 ******************************************************************************** 2024-03-10T18:14:38,633 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:38,635 `authors = 'Guy Assa'` 2024-03-10T18:14:38,636 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:38,636 consider this value unless `authors` is listed as `dynamic`. 2024-03-10T18:14:38,638 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:38,639 To prevent this problem, you can list `authors` under `dynamic` or alternatively 2024-03-10T18:14:38,639 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:38,640 configuration. 2024-03-10T18:14:38,641 ******************************************************************************** 2024-03-10T18:14:38,642 !! 2024-03-10T18:14:38,643 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:38,643 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:38,644 !! 2024-03-10T18:14:38,645 ******************************************************************************** 2024-03-10T18:14:38,646 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:38,647 `keywords = ['crispector2']` 2024-03-10T18:14:38,648 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:38,648 consider this value unless `keywords` is listed as `dynamic`. 2024-03-10T18:14:38,649 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:38,650 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2024-03-10T18:14:38,651 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:38,651 configuration. 2024-03-10T18:14:38,651 ******************************************************************************** 2024-03-10T18:14:38,652 !! 2024-03-10T18:14:38,653 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:38,653 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:38,654 !! 2024-03-10T18:14:38,655 ******************************************************************************** 2024-03-10T18:14:38,655 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:38,656 `classifiers = ['Development Status :: 4 - Beta', 'Intended Audience :: Science/Research', 'Topic :: Scientific/Engineering :: Bio-Informatics', 'License :: Other/Proprietary License', 'Natural Language :: English', 'Programming Language :: Python :: 3.7']` 2024-03-10T18:14:38,657 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:38,657 consider this value unless `classifiers` is listed as `dynamic`. 2024-03-10T18:14:38,658 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:38,659 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2024-03-10T18:14:38,660 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:38,660 configuration. 2024-03-10T18:14:38,661 ******************************************************************************** 2024-03-10T18:14:38,662 !! 2024-03-10T18:14:38,663 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:38,663 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `dependencies` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:38,664 !! 2024-03-10T18:14:38,665 ******************************************************************************** 2024-03-10T18:14:38,666 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:38,667 `dependencies = ['Click>=7.0', 'matplotlib>=3.1.2', 'seaborn>=0.9.0', 'pyyaml>=5.1.2', 'plotly>=4.3.0', 'numpy>=1.12.1', 'pandas>=0.24.2', 'biopython>=1.74', 'scipy>=1.2.1', 'statsmodels', 'jinja2', 'tqdm>=4.66.0', 'mpmath>=1.3.0']` 2024-03-10T18:14:38,668 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:38,668 consider this value unless `dependencies` is listed as `dynamic`. 2024-03-10T18:14:38,669 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:38,670 To prevent this problem, you can list `dependencies` under `dynamic` or alternatively 2024-03-10T18:14:38,671 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:38,671 configuration. 2024-03-10T18:14:38,672 ******************************************************************************** 2024-03-10T18:14:38,674 !! 2024-03-10T18:14:38,674 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:38,675 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-03-10T18:14:38,675 corresp(dist, value, root_dir) 2024-03-10T18:14:38,943 running egg_info 2024-03-10T18:14:38,948 writing crispector2.egg-info/PKG-INFO 2024-03-10T18:14:38,952 writing dependency_links to crispector2.egg-info/dependency_links.txt 2024-03-10T18:14:38,953 writing entry points to crispector2.egg-info/entry_points.txt 2024-03-10T18:14:38,955 writing top-level names to crispector2.egg-info/top_level.txt 2024-03-10T18:14:38,980 reading manifest file 'crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:38,985 reading manifest template 'MANIFEST.in' 2024-03-10T18:14:38,988 adding license file 'LICENSE' 2024-03-10T18:14:38,992 writing manifest file 'crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:39,109 Getting requirements to build wheel: finished with status 'done' 2024-03-10T18:14:39,118 Created temporary directory: /tmp/pip-modern-metadata-nic9kcy9 2024-03-10T18:14:39,121 Preparing metadata (pyproject.toml): started 2024-03-10T18:14:39,122 Running command Preparing metadata (pyproject.toml) 2024-03-10T18:14:39,612 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `description` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:39,612 !! 2024-03-10T18:14:39,613 ******************************************************************************** 2024-03-10T18:14:39,614 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:39,615 `description = 'CRISPECTOR2 - Genome Editing Analysis Tool, with allele extension'` 2024-03-10T18:14:39,616 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:39,616 consider this value unless `description` is listed as `dynamic`. 2024-03-10T18:14:39,618 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:39,619 To prevent this problem, you can list `description` under `dynamic` or alternatively 2024-03-10T18:14:39,619 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:39,620 configuration. 2024-03-10T18:14:39,620 ******************************************************************************** 2024-03-10T18:14:39,622 !! 2024-03-10T18:14:39,622 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:39,623 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `authors` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:39,624 !! 2024-03-10T18:14:39,625 ******************************************************************************** 2024-03-10T18:14:39,625 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:39,626 `authors = 'Guy Assa'` 2024-03-10T18:14:39,628 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:39,629 consider this value unless `authors` is listed as `dynamic`. 2024-03-10T18:14:39,630 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:39,631 To prevent this problem, you can list `authors` under `dynamic` or alternatively 2024-03-10T18:14:39,632 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:39,632 configuration. 2024-03-10T18:14:39,633 ******************************************************************************** 2024-03-10T18:14:39,635 !! 2024-03-10T18:14:39,635 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:39,636 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:39,637 !! 2024-03-10T18:14:39,638 ******************************************************************************** 2024-03-10T18:14:39,638 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:39,639 `keywords = ['crispector2']` 2024-03-10T18:14:39,640 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:39,641 consider this value unless `keywords` is listed as `dynamic`. 2024-03-10T18:14:39,642 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:39,643 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2024-03-10T18:14:39,643 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:39,644 configuration. 2024-03-10T18:14:39,644 ******************************************************************************** 2024-03-10T18:14:39,645 !! 2024-03-10T18:14:39,646 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:39,646 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:39,647 !! 2024-03-10T18:14:39,648 ******************************************************************************** 2024-03-10T18:14:39,649 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:39,650 `classifiers = ['Development Status :: 4 - Beta', 'Intended Audience :: Science/Research', 'Topic :: Scientific/Engineering :: Bio-Informatics', 'License :: Other/Proprietary License', 'Natural Language :: English', 'Programming Language :: Python :: 3.7']` 2024-03-10T18:14:39,651 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:39,651 consider this value unless `classifiers` is listed as `dynamic`. 2024-03-10T18:14:39,652 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:39,654 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2024-03-10T18:14:39,654 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:39,655 configuration. 2024-03-10T18:14:39,655 ******************************************************************************** 2024-03-10T18:14:39,657 !! 2024-03-10T18:14:39,657 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:39,658 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `dependencies` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:39,658 !! 2024-03-10T18:14:39,659 ******************************************************************************** 2024-03-10T18:14:39,660 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:39,661 `dependencies = ['Click>=7.0', 'matplotlib>=3.1.2', 'seaborn>=0.9.0', 'pyyaml>=5.1.2', 'plotly>=4.3.0', 'numpy>=1.12.1', 'pandas>=0.24.2', 'biopython>=1.74', 'scipy>=1.2.1', 'statsmodels', 'jinja2', 'tqdm>=4.66.0', 'mpmath>=1.3.0']` 2024-03-10T18:14:39,662 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:39,663 consider this value unless `dependencies` is listed as `dynamic`. 2024-03-10T18:14:39,664 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:39,666 To prevent this problem, you can list `dependencies` under `dynamic` or alternatively 2024-03-10T18:14:39,666 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:39,667 configuration. 2024-03-10T18:14:39,667 ******************************************************************************** 2024-03-10T18:14:39,668 !! 2024-03-10T18:14:39,669 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:39,670 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-03-10T18:14:39,670 corresp(dist, value, root_dir) 2024-03-10T18:14:39,915 running dist_info 2024-03-10T18:14:39,920 creating /tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info 2024-03-10T18:14:39,924 writing /tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/PKG-INFO 2024-03-10T18:14:39,929 writing dependency_links to /tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/dependency_links.txt 2024-03-10T18:14:39,931 writing entry points to /tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/entry_points.txt 2024-03-10T18:14:39,933 writing top-level names to /tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/top_level.txt 2024-03-10T18:14:39,935 writing manifest file '/tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:39,955 reading manifest file '/tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:39,957 reading manifest template 'MANIFEST.in' 2024-03-10T18:14:39,959 adding license file 'LICENSE' 2024-03-10T18:14:39,962 writing manifest file '/tmp/pip-modern-metadata-nic9kcy9/crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:39,963 creating '/tmp/pip-modern-metadata-nic9kcy9/crispector2-2.0.8.dist-info' 2024-03-10T18:14:40,114 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-10T18:14:40,119 Source in /tmp/pip-wheel-cvd_gr2j/crispector2_fb4489a9f780416eb2625292a636f945 has version 2.0.8, which satisfies requirement crispector2==2.0.8 from https://files.pythonhosted.org/packages/6d/79/3a27ec43b377e9665b18c78951f8902c640e4046bdbe8e255f06b0e9da7b/crispector2-2.0.8.tar.gz 2024-03-10T18:14:40,120 Removed crispector2==2.0.8 from https://files.pythonhosted.org/packages/6d/79/3a27ec43b377e9665b18c78951f8902c640e4046bdbe8e255f06b0e9da7b/crispector2-2.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-xs91t1_l' 2024-03-10T18:14:40,127 Created temporary directory: /tmp/pip-unpack-8_j7ls4g 2024-03-10T18:14:40,128 Created temporary directory: /tmp/pip-unpack-_t05szf7 2024-03-10T18:14:40,133 Building wheels for collected packages: crispector2 2024-03-10T18:14:40,138 Created temporary directory: /tmp/pip-wheel-uujcsvap 2024-03-10T18:14:40,138 Destination directory: /tmp/pip-wheel-uujcsvap 2024-03-10T18:14:40,141 Building wheel for crispector2 (pyproject.toml): started 2024-03-10T18:14:40,142 Running command Building wheel for crispector2 (pyproject.toml) 2024-03-10T18:14:40,623 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `description` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:40,623 !! 2024-03-10T18:14:40,624 ******************************************************************************** 2024-03-10T18:14:40,625 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:40,626 `description = 'CRISPECTOR2 - Genome Editing Analysis Tool, with allele extension'` 2024-03-10T18:14:40,627 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:40,628 consider this value unless `description` is listed as `dynamic`. 2024-03-10T18:14:40,629 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:40,631 To prevent this problem, you can list `description` under `dynamic` or alternatively 2024-03-10T18:14:40,631 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:40,631 configuration. 2024-03-10T18:14:40,632 ******************************************************************************** 2024-03-10T18:14:40,633 !! 2024-03-10T18:14:40,633 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:40,634 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `authors` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:40,634 !! 2024-03-10T18:14:40,635 ******************************************************************************** 2024-03-10T18:14:40,636 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:40,637 `authors = 'Guy Assa'` 2024-03-10T18:14:40,638 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:40,638 consider this value unless `authors` is listed as `dynamic`. 2024-03-10T18:14:40,639 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:40,640 To prevent this problem, you can list `authors` under `dynamic` or alternatively 2024-03-10T18:14:40,641 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:40,641 configuration. 2024-03-10T18:14:40,642 ******************************************************************************** 2024-03-10T18:14:40,643 !! 2024-03-10T18:14:40,643 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:40,644 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `keywords` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:40,644 !! 2024-03-10T18:14:40,646 ******************************************************************************** 2024-03-10T18:14:40,646 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:40,647 `keywords = ['crispector2']` 2024-03-10T18:14:40,648 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:40,649 consider this value unless `keywords` is listed as `dynamic`. 2024-03-10T18:14:40,650 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:40,651 To prevent this problem, you can list `keywords` under `dynamic` or alternatively 2024-03-10T18:14:40,652 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:40,652 configuration. 2024-03-10T18:14:40,653 ******************************************************************************** 2024-03-10T18:14:40,654 !! 2024-03-10T18:14:40,655 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:40,655 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `classifiers` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:40,656 !! 2024-03-10T18:14:40,657 ******************************************************************************** 2024-03-10T18:14:40,658 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:40,659 `classifiers = ['Development Status :: 4 - Beta', 'Intended Audience :: Science/Research', 'Topic :: Scientific/Engineering :: Bio-Informatics', 'License :: Other/Proprietary License', 'Natural Language :: English', 'Programming Language :: Python :: 3.7']` 2024-03-10T18:14:40,661 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:40,661 consider this value unless `classifiers` is listed as `dynamic`. 2024-03-10T18:14:40,662 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:40,663 To prevent this problem, you can list `classifiers` under `dynamic` or alternatively 2024-03-10T18:14:40,663 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:40,664 configuration. 2024-03-10T18:14:40,664 ******************************************************************************** 2024-03-10T18:14:40,665 !! 2024-03-10T18:14:40,666 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:40,666 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:76: _MissingDynamic: `dependencies` defined outside of `pyproject.toml` is ignored. 2024-03-10T18:14:40,667 !! 2024-03-10T18:14:40,667 ******************************************************************************** 2024-03-10T18:14:40,668 The following seems to be defined outside of `pyproject.toml`: 2024-03-10T18:14:40,669 `dependencies = ['Click>=7.0', 'matplotlib>=3.1.2', 'seaborn>=0.9.0', 'pyyaml>=5.1.2', 'plotly>=4.3.0', 'numpy>=1.12.1', 'pandas>=0.24.2', 'biopython>=1.74', 'scipy>=1.2.1', 'statsmodels', 'jinja2', 'tqdm>=4.66.0', 'mpmath>=1.3.0']` 2024-03-10T18:14:40,670 According to the spec (see the link below), however, setuptools CANNOT 2024-03-10T18:14:40,670 consider this value unless `dependencies` is listed as `dynamic`. 2024-03-10T18:14:40,671 https://packaging.python.org/en/latest/specifications/pyproject-toml/#declaring-project-metadata-the-project-table 2024-03-10T18:14:40,672 To prevent this problem, you can list `dependencies` under `dynamic` or alternatively 2024-03-10T18:14:40,673 remove the `[project]` table from your file and rely entirely on other means of 2024-03-10T18:14:40,674 configuration. 2024-03-10T18:14:40,674 ******************************************************************************** 2024-03-10T18:14:40,676 !! 2024-03-10T18:14:40,677 _handle_missing_dynamic(dist, project_table) 2024-03-10T18:14:40,677 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2024-03-10T18:14:40,678 corresp(dist, value, root_dir) 2024-03-10T18:14:40,896 running bdist_wheel 2024-03-10T18:14:40,913 running build 2024-03-10T18:14:40,914 running build_py 2024-03-10T18:14:40,918 creating build 2024-03-10T18:14:40,918 creating build/lib 2024-03-10T18:14:40,919 creating build/lib/crispector2 2024-03-10T18:14:40,920 copying crispector2/__init__.py -> build/lib/crispector2 2024-03-10T18:14:40,922 copying crispector2/cli.py -> build/lib/crispector2 2024-03-10T18:14:40,924 copying crispector2/crispector_main.py -> build/lib/crispector2 2024-03-10T18:14:40,928 creating build/lib/crispector2/algorithm 2024-03-10T18:14:40,929 copying crispector2/algorithm/binomial_probability.py -> build/lib/crispector2/algorithm 2024-03-10T18:14:40,931 copying crispector2/algorithm/translocations.py -> build/lib/crispector2/algorithm 2024-03-10T18:14:40,934 copying crispector2/algorithm/__init__.py -> build/lib/crispector2/algorithm 2024-03-10T18:14:40,935 copying crispector2/algorithm/translocations_original.py -> build/lib/crispector2/algorithm 2024-03-10T18:14:40,938 copying crispector2/algorithm/core_algorithm.py -> build/lib/crispector2/algorithm 2024-03-10T18:14:40,941 creating build/lib/crispector2/allele 2024-03-10T18:14:40,942 copying crispector2/allele/allele_reference_df.py -> build/lib/crispector2/allele 2024-03-10T18:14:40,944 copying crispector2/allele/__init__.py -> build/lib/crispector2/allele 2024-03-10T18:14:40,945 copying crispector2/allele/random_reads_handler.py -> build/lib/crispector2/allele 2024-03-10T18:14:40,948 copying crispector2/allele/allele_mock.py -> build/lib/crispector2/allele 2024-03-10T18:14:40,952 copying crispector2/allele/allele_tx.py -> build/lib/crispector2/allele 2024-03-10T18:14:40,954 creating build/lib/crispector2/config 2024-03-10T18:14:40,955 copying crispector2/config/__init__.py -> build/lib/crispector2/config 2024-03-10T18:14:40,957 creating build/lib/crispector2/input_processing 2024-03-10T18:14:40,958 copying crispector2/input_processing/input_processing.py -> build/lib/crispector2/input_processing 2024-03-10T18:14:40,961 copying crispector2/input_processing/__init__.py -> build/lib/crispector2/input_processing 2024-03-10T18:14:40,962 copying crispector2/input_processing/utils.py -> build/lib/crispector2/input_processing 2024-03-10T18:14:40,964 copying crispector2/input_processing/alignment.py -> build/lib/crispector2/input_processing 2024-03-10T18:14:40,967 creating build/lib/crispector2/modifications 2024-03-10T18:14:40,968 copying crispector2/modifications/__init__.py -> build/lib/crispector2/modifications 2024-03-10T18:14:40,970 copying crispector2/modifications/modification_types.py -> build/lib/crispector2/modifications 2024-03-10T18:14:40,972 copying crispector2/modifications/modification_tables.py -> build/lib/crispector2/modifications 2024-03-10T18:14:40,974 creating build/lib/crispector2/report 2024-03-10T18:14:40,975 copying crispector2/report/__init__.py -> build/lib/crispector2/report 2024-03-10T18:14:40,977 copying crispector2/report/html_report.py -> build/lib/crispector2/report 2024-03-10T18:14:40,979 copying crispector2/report/visualization_and_output.py -> build/lib/crispector2/report 2024-03-10T18:14:40,984 creating build/lib/crispector2/utils 2024-03-10T18:14:40,985 copying crispector2/utils/exceptions.py -> build/lib/crispector2/utils 2024-03-10T18:14:40,987 copying crispector2/utils/constants_and_types_old.py -> build/lib/crispector2/utils 2024-03-10T18:14:40,990 copying crispector2/utils/__init__.py -> build/lib/crispector2/utils 2024-03-10T18:14:40,991 copying crispector2/utils/logger.py -> build/lib/crispector2/utils 2024-03-10T18:14:40,993 copying crispector2/utils/constants_and_types.py -> build/lib/crispector2/utils 2024-03-10T18:14:40,995 copying crispector2/utils/configurator.py -> build/lib/crispector2/utils 2024-03-10T18:14:40,997 running egg_info 2024-03-10T18:14:41,001 writing crispector2.egg-info/PKG-INFO 2024-03-10T18:14:41,004 writing dependency_links to crispector2.egg-info/dependency_links.txt 2024-03-10T18:14:41,005 writing entry points to crispector2.egg-info/entry_points.txt 2024-03-10T18:14:41,007 writing top-level names to crispector2.egg-info/top_level.txt 2024-03-10T18:14:41,020 reading manifest file 'crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:41,022 reading manifest template 'MANIFEST.in' 2024-03-10T18:14:41,025 adding license file 'LICENSE' 2024-03-10T18:14:41,028 writing manifest file 'crispector2.egg-info/SOURCES.txt' 2024-03-10T18:14:41,030 /tmp/pip-build-env-zclnfsod/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'crispector2.report.html_templates' is absent from the `packages` configuration. 2024-03-10T18:14:41,031 !! 2024-03-10T18:14:41,032 ******************************************************************************** 2024-03-10T18:14:41,033 ############################ 2024-03-10T18:14:41,033 # Package would be ignored # 2024-03-10T18:14:41,034 ############################ 2024-03-10T18:14:41,034 Python recognizes 'crispector2.report.html_templates' as an importable package[^1], 2024-03-10T18:14:41,035 but it is absent from setuptools' `packages` configuration. 2024-03-10T18:14:41,036 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-10T18:14:41,036 package, please make sure that 'crispector2.report.html_templates' is explicitly added 2024-03-10T18:14:41,037 to the `packages` configuration field. 2024-03-10T18:14:41,038 Alternatively, you can also rely on setuptools' discovery methods 2024-03-10T18:14:41,039 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-10T18:14:41,039 instead of `find_packages(...)`/`find:`). 2024-03-10T18:14:41,040 You can read more about "package discovery" on setuptools documentation page: 2024-03-10T18:14:41,041 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-10T18:14:41,042 If you don't want 'crispector2.report.html_templates' to be distributed and are 2024-03-10T18:14:41,042 already explicitly excluding 'crispector2.report.html_templates' via 2024-03-10T18:14:41,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-10T18:14:41,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-10T18:14:41,044 combination with a more fine grained `package-data` configuration. 2024-03-10T18:14:41,045 You can read more about "package data files" on setuptools documentation page: 2024-03-10T18:14:41,046 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-10T18:14:41,047 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-10T18:14:41,048 even if it does not contain any `.py` files. 2024-03-10T18:14:41,050 On the other hand, currently there is no concept of package data 2024-03-10T18:14:41,051 directory, all directories are treated like packages. 2024-03-10T18:14:41,052 ******************************************************************************** 2024-03-10T18:14:41,053 !! 2024-03-10T18:14:41,053 check.warn(importable) 2024-03-10T18:14:41,054 copying crispector2/config/default_config.yml -> build/lib/crispector2/config 2024-03-10T18:14:41,054 creating build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,056 copying crispector2/report/html_templates/.DS_Store -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,058 copying crispector2/report/html_templates/crispector_logo.jpg -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,059 copying crispector2/report/html_templates/crispector_logo.png -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,060 copying crispector2/report/html_templates/file_to_render.html -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,063 copying crispector2/report/html_templates/file_to_render_old.html -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,066 copying crispector2/report/html_templates/final_layout.html -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,068 copying crispector2/report/html_templates/final_layout_old.html -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,071 copying crispector2/report/html_templates/site_file_to_render.html -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,073 copying crispector2/report/html_templates/site_layout.html -> build/lib/crispector2/report/html_templates 2024-03-10T18:14:41,085 installing to build/bdist.linux-armv7l/wheel 2024-03-10T18:14:41,086 running install 2024-03-10T18:14:41,109 running install_lib 2024-03-10T18:14:41,113 creating build/bdist.linux-armv7l 2024-03-10T18:14:41,114 creating build/bdist.linux-armv7l/wheel 2024-03-10T18:14:41,116 creating build/bdist.linux-armv7l/wheel/crispector2 2024-03-10T18:14:41,118 creating build/bdist.linux-armv7l/wheel/crispector2/algorithm 2024-03-10T18:14:41,119 copying build/lib/crispector2/algorithm/binomial_probability.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm 2024-03-10T18:14:41,122 copying build/lib/crispector2/algorithm/translocations.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm 2024-03-10T18:14:41,125 copying build/lib/crispector2/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm 2024-03-10T18:14:41,127 copying build/lib/crispector2/algorithm/translocations_original.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm 2024-03-10T18:14:41,129 copying build/lib/crispector2/algorithm/core_algorithm.py -> build/bdist.linux-armv7l/wheel/crispector2/algorithm 2024-03-10T18:14:41,132 creating build/bdist.linux-armv7l/wheel/crispector2/report 2024-03-10T18:14:41,133 copying build/lib/crispector2/report/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/report 2024-03-10T18:14:41,134 copying build/lib/crispector2/report/html_report.py -> build/bdist.linux-armv7l/wheel/crispector2/report 2024-03-10T18:14:41,137 copying build/lib/crispector2/report/visualization_and_output.py -> build/bdist.linux-armv7l/wheel/crispector2/report 2024-03-10T18:14:41,143 creating build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,144 copying build/lib/crispector2/report/html_templates/crispector_logo.jpg -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,153 copying build/lib/crispector2/report/html_templates/site_layout.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,156 copying build/lib/crispector2/report/html_templates/final_layout_old.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,159 copying build/lib/crispector2/report/html_templates/file_to_render_old.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,162 copying build/lib/crispector2/report/html_templates/.DS_Store -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,165 copying build/lib/crispector2/report/html_templates/site_file_to_render.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,168 copying build/lib/crispector2/report/html_templates/final_layout.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,171 copying build/lib/crispector2/report/html_templates/file_to_render.html -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,174 copying build/lib/crispector2/report/html_templates/crispector_logo.png -> build/bdist.linux-armv7l/wheel/crispector2/report/html_templates 2024-03-10T18:14:41,222 creating build/bdist.linux-armv7l/wheel/crispector2/config 2024-03-10T18:14:41,223 copying build/lib/crispector2/config/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/config 2024-03-10T18:14:41,225 copying build/lib/crispector2/config/default_config.yml -> build/bdist.linux-armv7l/wheel/crispector2/config 2024-03-10T18:14:41,228 creating build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,229 copying build/lib/crispector2/utils/exceptions.py -> build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,231 copying build/lib/crispector2/utils/constants_and_types_old.py -> build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,233 copying build/lib/crispector2/utils/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,235 copying build/lib/crispector2/utils/logger.py -> build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,236 copying build/lib/crispector2/utils/constants_and_types.py -> build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,239 copying build/lib/crispector2/utils/configurator.py -> build/bdist.linux-armv7l/wheel/crispector2/utils 2024-03-10T18:14:41,241 copying build/lib/crispector2/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2 2024-03-10T18:14:41,243 copying build/lib/crispector2/cli.py -> build/bdist.linux-armv7l/wheel/crispector2 2024-03-10T18:14:41,245 creating build/bdist.linux-armv7l/wheel/crispector2/input_processing 2024-03-10T18:14:41,246 copying build/lib/crispector2/input_processing/input_processing.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing 2024-03-10T18:14:41,250 copying build/lib/crispector2/input_processing/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing 2024-03-10T18:14:41,251 copying build/lib/crispector2/input_processing/utils.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing 2024-03-10T18:14:41,254 copying build/lib/crispector2/input_processing/alignment.py -> build/bdist.linux-armv7l/wheel/crispector2/input_processing 2024-03-10T18:14:41,257 creating build/bdist.linux-armv7l/wheel/crispector2/allele 2024-03-10T18:14:41,258 copying build/lib/crispector2/allele/allele_reference_df.py -> build/bdist.linux-armv7l/wheel/crispector2/allele 2024-03-10T18:14:41,261 copying build/lib/crispector2/allele/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/allele 2024-03-10T18:14:41,263 copying build/lib/crispector2/allele/random_reads_handler.py -> build/bdist.linux-armv7l/wheel/crispector2/allele 2024-03-10T18:14:41,461 copying build/lib/crispector2/allele/allele_mock.py -> build/bdist.linux-armv7l/wheel/crispector2/allele 2024-03-10T18:14:41,465 copying build/lib/crispector2/allele/allele_tx.py -> build/bdist.linux-armv7l/wheel/crispector2/allele 2024-03-10T18:14:41,469 creating build/bdist.linux-armv7l/wheel/crispector2/modifications 2024-03-10T18:14:41,470 copying build/lib/crispector2/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications 2024-03-10T18:14:41,472 copying build/lib/crispector2/modifications/modification_types.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications 2024-03-10T18:14:41,474 copying build/lib/crispector2/modifications/modification_tables.py -> build/bdist.linux-armv7l/wheel/crispector2/modifications 2024-03-10T18:14:41,477 copying build/lib/crispector2/crispector_main.py -> build/bdist.linux-armv7l/wheel/crispector2 2024-03-10T18:14:41,480 running install_egg_info 2024-03-10T18:14:41,485 Copying crispector2.egg-info to build/bdist.linux-armv7l/wheel/crispector2-2.0.8-py3.11.egg-info 2024-03-10T18:14:41,500 running install_scripts 2024-03-10T18:14:41,520 creating build/bdist.linux-armv7l/wheel/crispector2-2.0.8.dist-info/WHEEL 2024-03-10T18:14:41,524 creating '/tmp/pip-wheel-uujcsvap/.tmp-7u7udsws/crispector2-2.0.8-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-10T18:14:41,526 adding 'crispector2/__init__.py' 2024-03-10T18:14:41,529 adding 'crispector2/cli.py' 2024-03-10T18:14:41,534 adding 'crispector2/crispector_main.py' 2024-03-10T18:14:41,536 adding 'crispector2/algorithm/__init__.py' 2024-03-10T18:14:41,538 adding 'crispector2/algorithm/binomial_probability.py' 2024-03-10T18:14:41,540 adding 'crispector2/algorithm/core_algorithm.py' 2024-03-10T18:14:41,542 adding 'crispector2/algorithm/translocations.py' 2024-03-10T18:14:41,544 adding 'crispector2/algorithm/translocations_original.py' 2024-03-10T18:14:41,546 adding 'crispector2/allele/__init__.py' 2024-03-10T18:14:41,553 adding 'crispector2/allele/allele_mock.py' 2024-03-10T18:14:41,555 adding 'crispector2/allele/allele_reference_df.py' 2024-03-10T18:14:41,556 adding 'crispector2/allele/allele_tx.py' 2024-03-10T18:14:41,560 adding 'crispector2/allele/random_reads_handler.py' 2024-03-10T18:14:41,561 adding 'crispector2/config/__init__.py' 2024-03-10T18:14:41,563 adding 'crispector2/config/default_config.yml' 2024-03-10T18:14:41,564 adding 'crispector2/input_processing/__init__.py' 2024-03-10T18:14:41,568 adding 'crispector2/input_processing/alignment.py' 2024-03-10T18:14:41,572 adding 'crispector2/input_processing/input_processing.py' 2024-03-10T18:14:41,573 adding 'crispector2/input_processing/utils.py' 2024-03-10T18:14:41,575 adding 'crispector2/modifications/__init__.py' 2024-03-10T18:14:41,577 adding 'crispector2/modifications/modification_tables.py' 2024-03-10T18:14:41,578 adding 'crispector2/modifications/modification_types.py' 2024-03-10T18:14:41,580 adding 'crispector2/report/__init__.py' 2024-03-10T18:14:41,581 adding 'crispector2/report/html_report.py' 2024-03-10T18:14:41,587 adding 'crispector2/report/visualization_and_output.py' 2024-03-10T18:14:41,590 adding 'crispector2/report/html_templates/.DS_Store' 2024-03-10T18:14:41,611 adding 'crispector2/report/html_templates/crispector_logo.jpg' 2024-03-10T18:14:41,633 adding 'crispector2/report/html_templates/crispector_logo.png' 2024-03-10T18:14:41,636 adding 'crispector2/report/html_templates/file_to_render.html' 2024-03-10T18:14:41,638 adding 'crispector2/report/html_templates/file_to_render_old.html' 2024-03-10T18:14:41,639 adding 'crispector2/report/html_templates/final_layout.html' 2024-03-10T18:14:41,641 adding 'crispector2/report/html_templates/final_layout_old.html' 2024-03-10T18:14:41,642 adding 'crispector2/report/html_templates/site_file_to_render.html' 2024-03-10T18:14:41,644 adding 'crispector2/report/html_templates/site_layout.html' 2024-03-10T18:14:41,645 adding 'crispector2/utils/__init__.py' 2024-03-10T18:14:41,647 adding 'crispector2/utils/configurator.py' 2024-03-10T18:14:41,649 adding 'crispector2/utils/constants_and_types.py' 2024-03-10T18:14:41,651 adding 'crispector2/utils/constants_and_types_old.py' 2024-03-10T18:14:41,652 adding 'crispector2/utils/exceptions.py' 2024-03-10T18:14:41,653 adding 'crispector2/utils/logger.py' 2024-03-10T18:14:41,655 adding 'crispector2-2.0.8.dist-info/LICENSE' 2024-03-10T18:14:41,658 adding 'crispector2-2.0.8.dist-info/METADATA' 2024-03-10T18:14:41,659 adding 'crispector2-2.0.8.dist-info/WHEEL' 2024-03-10T18:14:41,660 adding 'crispector2-2.0.8.dist-info/entry_points.txt' 2024-03-10T18:14:41,661 adding 'crispector2-2.0.8.dist-info/top_level.txt' 2024-03-10T18:14:41,662 adding 'crispector2-2.0.8.dist-info/RECORD' 2024-03-10T18:14:41,674 removing build/bdist.linux-armv7l/wheel 2024-03-10T18:14:41,805 Building wheel for crispector2 (pyproject.toml): finished with status 'done' 2024-03-10T18:14:41,819 Created wheel for crispector2: filename=crispector2-2.0.8-py2.py3-none-any.whl size=440203 sha256=f222d0d4bb178770571ae530e472b4e231beaad1d23086a159edd7dfa54074eb 2024-03-10T18:14:41,820 Stored in directory: /tmp/pip-ephem-wheel-cache-zaa487x3/wheels/ef/b4/92/34654275c3ac4d2225aeb91ea9152b3c391224865bbe2603df 2024-03-10T18:14:41,833 Successfully built crispector2 2024-03-10T18:14:41,851 Removed build tracker: '/tmp/pip-build-tracker-xs91t1_l'