2024-03-11T15:23:29,639 Created temporary directory: /tmp/pip-build-tracker-fn21fjlc
2024-03-11T15:23:29,640 Initialized build tracking at /tmp/pip-build-tracker-fn21fjlc
2024-03-11T15:23:29,641 Created build tracker: /tmp/pip-build-tracker-fn21fjlc
2024-03-11T15:23:29,641 Entered build tracker: /tmp/pip-build-tracker-fn21fjlc
2024-03-11T15:23:29,642 Created temporary directory: /tmp/pip-wheel-bl9bzdx9
2024-03-11T15:23:29,645 Created temporary directory: /tmp/pip-ephem-wheel-cache-ecl_8fsn
2024-03-11T15:23:29,671 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-11T15:23:29,675 2 location(s) to search for versions of scbamtools:
2024-03-11T15:23:29,675 * https://pypi.org/simple/scbamtools/
2024-03-11T15:23:29,675 * https://www.piwheels.org/simple/scbamtools/
2024-03-11T15:23:29,675 Fetching project page and analyzing links: https://pypi.org/simple/scbamtools/
2024-03-11T15:23:29,676 Getting page https://pypi.org/simple/scbamtools/
2024-03-11T15:23:29,678 Found index url https://pypi.org/simple/
2024-03-11T15:23:29,895 Fetched page https://pypi.org/simple/scbamtools/ as application/vnd.pypi.simple.v1+json
2024-03-11T15:23:29,897   Found link https://files.pythonhosted.org/packages/90/98/a7355f2097b73330b58718e0c6e83ee7b93bee0d6a00a010db3eaea2fbd5/scbamtools-0.1.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10), version: 0.1
2024-03-11T15:23:29,898   Found link https://files.pythonhosted.org/packages/24/fa/fd646836da42c49f38967ac48eaf7b6e360da3f50b94a305ef06f093a6ba/scbamtools-0.2.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10), version: 0.2
2024-03-11T15:23:29,898 Fetching project page and analyzing links: https://www.piwheels.org/simple/scbamtools/
2024-03-11T15:23:29,899 Getting page https://www.piwheels.org/simple/scbamtools/
2024-03-11T15:23:29,900 Found index url https://www.piwheels.org/simple/
2024-03-11T15:23:30,306 Fetched page https://www.piwheels.org/simple/scbamtools/ as text/html
2024-03-11T15:23:30,308 Skipping link: not a file: https://www.piwheels.org/simple/scbamtools/
2024-03-11T15:23:30,308 Skipping link: not a file: https://pypi.org/simple/scbamtools/
2024-03-11T15:23:30,327 Given no hashes to check 1 links for project 'scbamtools': discarding no candidates
2024-03-11T15:23:30,345 Collecting scbamtools==0.1
2024-03-11T15:23:30,348   Created temporary directory: /tmp/pip-unpack-x1y5ystt
2024-03-11T15:23:30,604   Downloading scbamtools-0.1.tar.gz (337 kB)
2024-03-11T15:23:30,869   Added scbamtools==0.1 from https://files.pythonhosted.org/packages/90/98/a7355f2097b73330b58718e0c6e83ee7b93bee0d6a00a010db3eaea2fbd5/scbamtools-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-fn21fjlc'
2024-03-11T15:23:30,870   Running setup.py (path:/tmp/pip-wheel-bl9bzdx9/scbamtools_8667a8f577464c78b85427d96758b53f/setup.py) egg_info for package scbamtools
2024-03-11T15:23:30,871   Created temporary directory: /tmp/pip-pip-egg-info-2xz157t9
2024-03-11T15:23:30,872   Preparing metadata (setup.py): started
2024-03-11T15:23:30,873   Running command python setup.py egg_info
2024-03-11T15:23:32,332   Traceback (most recent call last):
2024-03-11T15:23:32,332     File "<string>", line 2, in <module>
2024-03-11T15:23:32,333     File "<pip-setuptools-caller>", line 34, in <module>
2024-03-11T15:23:32,334     File "/tmp/pip-wheel-bl9bzdx9/scbamtools_8667a8f577464c78b85427d96758b53f/setup.py", line 33, in <module>
2024-03-11T15:23:32,334       ext_modules = cythonize(extensions, compiler_directives={"language_level": 3, "profile": False}),
2024-03-11T15:23:32,335                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,335     File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 1010, in cythonize
2024-03-11T15:23:32,338       module_list, module_metadata = create_extension_list(
2024-03-11T15:23:32,338                                      ^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,339     File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 845, in create_extension_list
2024-03-11T15:23:32,340       for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' doesn't match any files" % filepattern):
2024-03-11T15:23:32,340     File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 117, in nonempty
2024-03-11T15:23:32,341       raise ValueError(error_msg)
2024-03-11T15:23:32,342   ValueError: 'scbamtools/cython/kmers.pyx' doesn't match any files
2024-03-11T15:23:32,496   ERROR: python setup.py egg_info exited with 1
2024-03-11T15:23:32,511   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2024-03-11T15:23:32,511   exec(compile('"'"''"'"''"'"'
2024-03-11T15:23:32,511   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2024-03-11T15:23:32,511   #
2024-03-11T15:23:32,511   # - It imports setuptools before invoking setup.py, to enable projects that directly
2024-03-11T15:23:32,511   #   import from `distutils.core` to work with newer packaging standards.
2024-03-11T15:23:32,511   # - It provides a clear error message when setuptools is not installed.
2024-03-11T15:23:32,511   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2024-03-11T15:23:32,511   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2024-03-11T15:23:32,511   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2024-03-11T15:23:32,511   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2024-03-11T15:23:32,511   import os, sys, tokenize
2024-03-11T15:23:32,511   
2024-03-11T15:23:32,511   try:
2024-03-11T15:23:32,511       import setuptools
2024-03-11T15:23:32,511   except ImportError as error:
2024-03-11T15:23:32,511       print(
2024-03-11T15:23:32,511           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2024-03-11T15:23:32,511           "the build environment.",
2024-03-11T15:23:32,511           file=sys.stderr,
2024-03-11T15:23:32,511       )
2024-03-11T15:23:32,511       sys.exit(1)
2024-03-11T15:23:32,511   
2024-03-11T15:23:32,511   __file__ = %r
2024-03-11T15:23:32,511   sys.argv[0] = __file__
2024-03-11T15:23:32,511   
2024-03-11T15:23:32,511   if os.path.exists(__file__):
2024-03-11T15:23:32,511       filename = __file__
2024-03-11T15:23:32,511       with tokenize.open(__file__) as f:
2024-03-11T15:23:32,511           setup_py_code = f.read()
2024-03-11T15:23:32,511   else:
2024-03-11T15:23:32,511       filename = "<auto-generated setuptools caller>"
2024-03-11T15:23:32,511       setup_py_code = "from setuptools import setup; setup()"
2024-03-11T15:23:32,511   
2024-03-11T15:23:32,511   exec(compile(setup_py_code, filename, "exec"))
2024-03-11T15:23:32,511   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-bl9bzdx9/scbamtools_8667a8f577464c78b85427d96758b53f/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-2xz157t9[/]
2024-03-11T15:23:32,511   [bold magenta]cwd[/]: /tmp/pip-wheel-bl9bzdx9/scbamtools_8667a8f577464c78b85427d96758b53f/
2024-03-11T15:23:32,512   Preparing metadata (setup.py): finished with status 'error'
2024-03-11T15:23:32,514 ERROR: metadata generation failed
2024-03-11T15:23:32,519 Exception information:
2024-03-11T15:23:32,519 Traceback (most recent call last):
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2024-03-11T15:23:32,519     call_subprocess(
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2024-03-11T15:23:32,519     raise error
2024-03-11T15:23:32,519 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2024-03-11T15:23:32,519 
2024-03-11T15:23:32,519 The above exception was the direct cause of the following exception:
2024-03-11T15:23:32,519 
2024-03-11T15:23:32,519 Traceback (most recent call last):
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2024-03-11T15:23:32,519     status = run_func(*args)
2024-03-11T15:23:32,519              ^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper
2024-03-11T15:23:32,519     return func(self, options, args)
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2024-03-11T15:23:32,519     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2024-03-11T15:23:32,519                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve
2024-03-11T15:23:32,519     result = self._result = resolver.resolve(
2024-03-11T15:23:32,519                             ^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2024-03-11T15:23:32,519     state = resolution.resolve(requirements, max_rounds=max_rounds)
2024-03-11T15:23:32,519             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2024-03-11T15:23:32,519     self._add_to_criteria(self.state.criteria, r, parent=None)
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2024-03-11T15:23:32,519     if not criterion.candidates:
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2024-03-11T15:23:32,519     return bool(self._sequence)
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2024-03-11T15:23:32,519     return any(self)
2024-03-11T15:23:32,519            ^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2024-03-11T15:23:32,519     return (c for c in iterator if id(c) not in self._incompatible_ids)
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2024-03-11T15:23:32,519     candidate = func()
2024-03-11T15:23:32,519                 ^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 182, in _make_candidate_from_link
2024-03-11T15:23:32,519     base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
2024-03-11T15:23:32,519                                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 228, in _make_base_candidate_from_link
2024-03-11T15:23:32,519     self._link_candidate_cache[link] = LinkCandidate(
2024-03-11T15:23:32,519                                        ^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 290, in __init__
2024-03-11T15:23:32,519     super().__init__(
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2024-03-11T15:23:32,519     self.dist = self._prepare()
2024-03-11T15:23:32,519                 ^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 222, in _prepare
2024-03-11T15:23:32,519     dist = self._prepare_distribution()
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 301, in _prepare_distribution
2024-03-11T15:23:32,519     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 525, in prepare_linked_requirement
2024-03-11T15:23:32,519     return self._prepare_linked_requirement(req, parallel_builds)
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 640, in _prepare_linked_requirement
2024-03-11T15:23:32,519     dist = _get_prepared_distribution(
2024-03-11T15:23:32,519            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 71, in _get_prepared_distribution
2024-03-11T15:23:32,519     abstract_dist.prepare_distribution_metadata(
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 67, in prepare_distribution_metadata
2024-03-11T15:23:32,519     self.req.prepare_metadata()
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 585, in prepare_metadata
2024-03-11T15:23:32,519     self.metadata_directory = generate_metadata_legacy(
2024-03-11T15:23:32,519                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2024-03-11T15:23:32,519   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2024-03-11T15:23:32,519     raise MetadataGenerationFailed(package_details=details) from error
2024-03-11T15:23:32,519 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2024-03-11T15:23:32,533 Removed scbamtools==0.1 from https://files.pythonhosted.org/packages/90/98/a7355f2097b73330b58718e0c6e83ee7b93bee0d6a00a010db3eaea2fbd5/scbamtools-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-fn21fjlc'
2024-03-11T15:23:32,534 Removed build tracker: '/tmp/pip-build-tracker-fn21fjlc'