2024-03-12T22:19:51,461 Created temporary directory: /tmp/pip-build-tracker-rkcq_749 2024-03-12T22:19:51,462 Initialized build tracking at /tmp/pip-build-tracker-rkcq_749 2024-03-12T22:19:51,462 Created build tracker: /tmp/pip-build-tracker-rkcq_749 2024-03-12T22:19:51,463 Entered build tracker: /tmp/pip-build-tracker-rkcq_749 2024-03-12T22:19:51,464 Created temporary directory: /tmp/pip-wheel-bniid6uh 2024-03-12T22:19:51,467 Created temporary directory: /tmp/pip-ephem-wheel-cache-fqf2b6f7 2024-03-12T22:19:51,490 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-12T22:19:51,493 2 location(s) to search for versions of pub-worm: 2024-03-12T22:19:51,493 * https://pypi.org/simple/pub-worm/ 2024-03-12T22:19:51,493 * https://www.piwheels.org/simple/pub-worm/ 2024-03-12T22:19:51,494 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/ 2024-03-12T22:19:51,495 Getting page https://pypi.org/simple/pub-worm/ 2024-03-12T22:19:51,497 Found index url https://pypi.org/simple/ 2024-03-12T22:19:51,639 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json 2024-03-12T22:19:51,644 Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1 2024-03-12T22:19:51,645 Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1 2024-03-12T22:19:51,646 Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2 2024-03-12T22:19:51,647 Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3 2024-03-12T22:19:51,647 Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4 2024-03-12T22:19:51,648 Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5 2024-03-12T22:19:51,649 Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6 2024-03-12T22:19:51,650 Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7 2024-03-12T22:19:51,651 Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8 2024-03-12T22:19:51,652 Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9 2024-03-12T22:19:51,653 Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0 2024-03-12T22:19:51,654 Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1 2024-03-12T22:19:51,655 Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2 2024-03-12T22:19:51,655 Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3 2024-03-12T22:19:51,656 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/ 2024-03-12T22:19:51,658 Getting page https://www.piwheels.org/simple/pub-worm/ 2024-03-12T22:19:51,659 Found index url https://www.piwheels.org/simple/ 2024-03-12T22:19:52,259 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html 2024-03-12T22:19:52,479 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,480 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,481 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,482 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,483 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,484 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,484 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,485 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,486 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,487 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,488 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,489 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,490 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-12T22:19:52,491 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/ 2024-03-12T22:19:52,492 Skipping link: not a file: https://pypi.org/simple/pub-worm/ 2024-03-12T22:19:52,533 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates 2024-03-12T22:19:52,567 Collecting pub-worm==0.2.3 2024-03-12T22:19:52,569 Created temporary directory: /tmp/pip-unpack-t2h65m33 2024-03-12T22:19:52,811 Downloading pub_worm-0.2.3.tar.gz (385 kB) 2024-03-12T22:19:53,014 Added pub-worm==0.2.3 from https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-rkcq_749' 2024-03-12T22:19:53,016 Running setup.py (path:/tmp/pip-wheel-bniid6uh/pub-worm_278df2df47d941db92184cd4d27a62dd/setup.py) egg_info for package pub-worm 2024-03-12T22:19:53,017 Created temporary directory: /tmp/pip-pip-egg-info-xcoxsapt 2024-03-12T22:19:53,018 Preparing metadata (setup.py): started 2024-03-12T22:19:53,019 Running command python setup.py egg_info 2024-03-12T22:19:54,127 running egg_info 2024-03-12T22:19:54,128 creating /tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info 2024-03-12T22:19:54,153 writing /tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/PKG-INFO 2024-03-12T22:19:54,156 writing dependency_links to /tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/dependency_links.txt 2024-03-12T22:19:54,158 writing requirements to /tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/requires.txt 2024-03-12T22:19:54,160 writing top-level names to /tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/top_level.txt 2024-03-12T22:19:54,161 writing manifest file '/tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/SOURCES.txt' 2024-03-12T22:19:54,243 reading manifest file '/tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/SOURCES.txt' 2024-03-12T22:19:54,244 reading manifest template 'MANIFEST.in' 2024-03-12T22:19:54,248 writing manifest file '/tmp/pip-pip-egg-info-xcoxsapt/pub_worm.egg-info/SOURCES.txt' 2024-03-12T22:19:54,356 Preparing metadata (setup.py): finished with status 'done' 2024-03-12T22:19:54,359 Source in /tmp/pip-wheel-bniid6uh/pub-worm_278df2df47d941db92184cd4d27a62dd has version 0.2.3, which satisfies requirement pub-worm==0.2.3 from https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz 2024-03-12T22:19:54,360 Removed pub-worm==0.2.3 from https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-rkcq_749' 2024-03-12T22:19:54,364 Created temporary directory: /tmp/pip-unpack-48bjf9l2 2024-03-12T22:19:54,365 Created temporary directory: /tmp/pip-unpack-f44hvccv 2024-03-12T22:19:54,369 Building wheels for collected packages: pub-worm 2024-03-12T22:19:54,374 Created temporary directory: /tmp/pip-wheel-57qg9qmm 2024-03-12T22:19:54,374 Building wheel for pub-worm (setup.py): started 2024-03-12T22:19:54,375 Destination directory: /tmp/pip-wheel-57qg9qmm 2024-03-12T22:19:54,376 Running command python setup.py bdist_wheel 2024-03-12T22:19:55,418 running bdist_wheel 2024-03-12T22:19:55,514 running build 2024-03-12T22:19:55,515 running build_py 2024-03-12T22:19:55,543 creating build 2024-03-12T22:19:55,544 creating build/lib 2024-03-12T22:19:55,544 creating build/lib/pub_worm 2024-03-12T22:19:55,545 copying pub_worm/__init__.py -> build/lib/pub_worm 2024-03-12T22:19:55,547 creating build/lib/pub_worm/ncbi 2024-03-12T22:19:55,548 copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi 2024-03-12T22:19:55,550 copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi 2024-03-12T22:19:55,553 creating build/lib/pub_worm/wormbase 2024-03-12T22:19:55,555 copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase 2024-03-12T22:19:55,556 copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase 2024-03-12T22:19:55,559 copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase 2024-03-12T22:19:55,561 creating build/lib/pub_worm/impact_factor 2024-03-12T22:19:55,562 copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor 2024-03-12T22:19:55,563 copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor 2024-03-12T22:19:55,565 running egg_info 2024-03-12T22:19:55,621 writing pub_worm.egg-info/PKG-INFO 2024-03-12T22:19:55,623 writing dependency_links to pub_worm.egg-info/dependency_links.txt 2024-03-12T22:19:55,625 writing requirements to pub_worm.egg-info/requires.txt 2024-03-12T22:19:55,626 writing top-level names to pub_worm.egg-info/top_level.txt 2024-03-12T22:19:55,657 reading manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-12T22:19:55,659 reading manifest template 'MANIFEST.in' 2024-03-12T22:19:55,663 writing manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-12T22:19:55,665 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration. 2024-03-12T22:19:55,666 !! 2024-03-12T22:19:55,667 ******************************************************************************** 2024-03-12T22:19:55,667 ############################ 2024-03-12T22:19:55,668 # Package would be ignored # 2024-03-12T22:19:55,668 ############################ 2024-03-12T22:19:55,669 Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1], 2024-03-12T22:19:55,669 but it is absent from setuptools' `packages` configuration. 2024-03-12T22:19:55,671 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-12T22:19:55,671 package, please make sure that 'pub_worm.impact_factor.data' is explicitly added 2024-03-12T22:19:55,672 to the `packages` configuration field. 2024-03-12T22:19:55,673 Alternatively, you can also rely on setuptools' discovery methods 2024-03-12T22:19:55,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-12T22:19:55,675 instead of `find_packages(...)`/`find:`). 2024-03-12T22:19:55,676 You can read more about "package discovery" on setuptools documentation page: 2024-03-12T22:19:55,678 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-12T22:19:55,679 If you don't want 'pub_worm.impact_factor.data' to be distributed and are 2024-03-12T22:19:55,680 already explicitly excluding 'pub_worm.impact_factor.data' via 2024-03-12T22:19:55,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-12T22:19:55,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-12T22:19:55,683 combination with a more fine grained `package-data` configuration. 2024-03-12T22:19:55,685 You can read more about "package data files" on setuptools documentation page: 2024-03-12T22:19:55,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-12T22:19:55,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-12T22:19:55,691 even if it does not contain any `.py` files. 2024-03-12T22:19:55,691 On the other hand, currently there is no concept of package data 2024-03-12T22:19:55,692 directory, all directories are treated like packages. 2024-03-12T22:19:55,693 ******************************************************************************** 2024-03-12T22:19:55,695 !! 2024-03-12T22:19:55,696 check.warn(importable) 2024-03-12T22:19:55,697 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.ncbi.data' is absent from the `packages` configuration. 2024-03-12T22:19:55,697 !! 2024-03-12T22:19:55,699 ******************************************************************************** 2024-03-12T22:19:55,699 ############################ 2024-03-12T22:19:55,700 # Package would be ignored # 2024-03-12T22:19:55,701 ############################ 2024-03-12T22:19:55,701 Python recognizes 'pub_worm.ncbi.data' as an importable package[^1], 2024-03-12T22:19:55,701 but it is absent from setuptools' `packages` configuration. 2024-03-12T22:19:55,702 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-12T22:19:55,703 package, please make sure that 'pub_worm.ncbi.data' is explicitly added 2024-03-12T22:19:55,703 to the `packages` configuration field. 2024-03-12T22:19:55,704 Alternatively, you can also rely on setuptools' discovery methods 2024-03-12T22:19:55,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-12T22:19:55,705 instead of `find_packages(...)`/`find:`). 2024-03-12T22:19:55,706 You can read more about "package discovery" on setuptools documentation page: 2024-03-12T22:19:55,707 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-12T22:19:55,708 If you don't want 'pub_worm.ncbi.data' to be distributed and are 2024-03-12T22:19:55,708 already explicitly excluding 'pub_worm.ncbi.data' via 2024-03-12T22:19:55,708 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-12T22:19:55,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-12T22:19:55,709 combination with a more fine grained `package-data` configuration. 2024-03-12T22:19:55,711 You can read more about "package data files" on setuptools documentation page: 2024-03-12T22:19:55,717 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-12T22:19:55,774 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-12T22:19:55,775 even if it does not contain any `.py` files. 2024-03-12T22:19:55,775 On the other hand, currently there is no concept of package data 2024-03-12T22:19:55,776 directory, all directories are treated like packages. 2024-03-12T22:19:55,776 ******************************************************************************** 2024-03-12T22:19:55,778 !! 2024-03-12T22:19:55,778 check.warn(importable) 2024-03-12T22:19:55,779 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration. 2024-03-12T22:19:55,779 !! 2024-03-12T22:19:55,780 ******************************************************************************** 2024-03-12T22:19:55,781 ############################ 2024-03-12T22:19:55,782 # Package would be ignored # 2024-03-12T22:19:55,782 ############################ 2024-03-12T22:19:55,783 Python recognizes 'pub_worm.wormbase.data' as an importable package[^1], 2024-03-12T22:19:55,783 but it is absent from setuptools' `packages` configuration. 2024-03-12T22:19:55,784 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-12T22:19:55,785 package, please make sure that 'pub_worm.wormbase.data' is explicitly added 2024-03-12T22:19:55,786 to the `packages` configuration field. 2024-03-12T22:19:55,787 Alternatively, you can also rely on setuptools' discovery methods 2024-03-12T22:19:55,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-12T22:19:55,788 instead of `find_packages(...)`/`find:`). 2024-03-12T22:19:55,790 You can read more about "package discovery" on setuptools documentation page: 2024-03-12T22:19:55,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-12T22:19:55,792 If you don't want 'pub_worm.wormbase.data' to be distributed and are 2024-03-12T22:19:55,793 already explicitly excluding 'pub_worm.wormbase.data' via 2024-03-12T22:19:55,794 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-12T22:19:55,794 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-12T22:19:55,795 combination with a more fine grained `package-data` configuration. 2024-03-12T22:19:55,795 You can read more about "package data files" on setuptools documentation page: 2024-03-12T22:19:55,797 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-12T22:19:55,798 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-12T22:19:55,799 even if it does not contain any `.py` files. 2024-03-12T22:19:55,799 On the other hand, currently there is no concept of package data 2024-03-12T22:19:55,799 directory, all directories are treated like packages. 2024-03-12T22:19:55,800 ******************************************************************************** 2024-03-12T22:19:55,801 !! 2024-03-12T22:19:55,802 check.warn(importable) 2024-03-12T22:19:55,802 creating build/lib/pub_worm/ncbi/data 2024-03-12T22:19:55,803 copying pub_worm/ncbi/data/ncbi_efetch.json -> build/lib/pub_worm/ncbi/data 2024-03-12T22:19:55,803 copying pub_worm/ncbi/data/ncbi_esearch.json -> build/lib/pub_worm/ncbi/data 2024-03-12T22:19:55,804 copying pub_worm/ncbi/data/ncbi_esummary.json -> build/lib/pub_worm/ncbi/data 2024-03-12T22:19:55,804 creating build/lib/pub_worm/wormbase/data 2024-03-12T22:19:55,804 copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-12T22:19:55,805 copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data 2024-03-12T22:19:55,806 copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-12T22:19:55,806 creating build/lib/pub_worm/impact_factor/data 2024-03-12T22:19:55,807 copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data 2024-03-12T22:19:55,810 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-12T22:19:55,811 !! 2024-03-12T22:19:55,812 ******************************************************************************** 2024-03-12T22:19:55,812 Please avoid running ``setup.py`` directly. 2024-03-12T22:19:55,813 Instead, use pypa/build, pypa/installer or other 2024-03-12T22:19:55,813 standards-based tools. 2024-03-12T22:19:55,814 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-12T22:19:55,815 ******************************************************************************** 2024-03-12T22:19:55,816 !! 2024-03-12T22:19:55,817 self.initialize_options() 2024-03-12T22:19:55,838 installing to build/bdist.linux-armv7l/wheel 2024-03-12T22:19:55,839 running install 2024-03-12T22:19:55,862 running install_lib 2024-03-12T22:19:55,889 creating build/bdist.linux-armv7l 2024-03-12T22:19:55,889 creating build/bdist.linux-armv7l/wheel 2024-03-12T22:19:55,891 creating build/bdist.linux-armv7l/wheel/pub_worm 2024-03-12T22:19:55,893 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-12T22:19:55,895 copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-12T22:19:55,898 copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-12T22:19:55,902 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-12T22:19:55,903 copying build/lib/pub_worm/ncbi/data/ncbi_efetch.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-12T22:19:55,906 copying build/lib/pub_worm/ncbi/data/ncbi_esearch.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-12T22:19:55,909 copying build/lib/pub_worm/ncbi/data/ncbi_esummary.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-12T22:19:55,912 copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm 2024-03-12T22:19:55,915 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-12T22:19:55,917 copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-12T22:19:55,920 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-12T22:19:55,921 copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-12T22:19:55,923 copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-12T22:19:55,925 copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-12T22:19:55,928 copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-12T22:19:55,931 copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-12T22:19:55,934 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-12T22:19:55,935 copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-12T22:19:55,937 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-12T22:19:55,938 copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-12T22:19:55,973 copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-12T22:19:55,975 running install_egg_info 2024-03-12T22:19:56,007 Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/pub_worm-0.2.3-py3.11.egg-info 2024-03-12T22:19:56,020 running install_scripts 2024-03-12T22:19:56,031 creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.3.dist-info/WHEEL 2024-03-12T22:19:56,034 creating '/tmp/pip-wheel-57qg9qmm/pub_worm-0.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-12T22:19:56,036 adding 'pub_worm/__init__.py' 2024-03-12T22:19:56,038 adding 'pub_worm/impact_factor/__init__.py' 2024-03-12T22:19:56,039 adding 'pub_worm/impact_factor/impact_factor_lookup.py' 2024-03-12T22:19:56,216 adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv' 2024-03-12T22:19:56,232 adding 'pub_worm/ncbi/__init__.py' 2024-03-12T22:19:56,234 adding 'pub_worm/ncbi/entreze_api.py' 2024-03-12T22:19:56,236 adding 'pub_worm/ncbi/data/ncbi_efetch.json' 2024-03-12T22:19:56,238 adding 'pub_worm/ncbi/data/ncbi_esearch.json' 2024-03-12T22:19:56,239 adding 'pub_worm/ncbi/data/ncbi_esummary.json' 2024-03-12T22:19:56,241 adding 'pub_worm/wormbase/__init__.py' 2024-03-12T22:19:56,243 adding 'pub_worm/wormbase/to_csv_helpers.py' 2024-03-12T22:19:56,245 adding 'pub_worm/wormbase/wormbase_api.py' 2024-03-12T22:19:56,247 adding 'pub_worm/wormbase/data/wormbase_field_gene.json' 2024-03-12T22:19:56,249 adding 'pub_worm/wormbase/data/wormbase_field_paper.json' 2024-03-12T22:19:56,251 adding 'pub_worm/wormbase/data/wormbase_widget_gene.json' 2024-03-12T22:19:56,253 adding 'pub_worm-0.2.3.dist-info/METADATA' 2024-03-12T22:19:56,254 adding 'pub_worm-0.2.3.dist-info/WHEEL' 2024-03-12T22:19:56,255 adding 'pub_worm-0.2.3.dist-info/top_level.txt' 2024-03-12T22:19:56,257 adding 'pub_worm-0.2.3.dist-info/RECORD' 2024-03-12T22:19:56,270 removing build/bdist.linux-armv7l/wheel 2024-03-12T22:19:56,393 Building wheel for pub-worm (setup.py): finished with status 'done' 2024-03-12T22:19:56,399 Created wheel for pub-worm: filename=pub_worm-0.2.3-py3-none-any.whl size=389804 sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a 2024-03-12T22:19:56,401 Stored in directory: /tmp/pip-ephem-wheel-cache-fqf2b6f7/wheels/d4/3a/bb/0de050f0ac764ef4000b74dcf3434037d8b37a0516e158eb97 2024-03-12T22:19:56,411 Successfully built pub-worm 2024-03-12T22:19:56,516 Removed build tracker: '/tmp/pip-build-tracker-rkcq_749'