2024-03-13T00:26:59,848 Created temporary directory: /tmp/pip-build-tracker-p8nuo1s0 2024-03-13T00:26:59,849 Initialized build tracking at /tmp/pip-build-tracker-p8nuo1s0 2024-03-13T00:26:59,850 Created build tracker: /tmp/pip-build-tracker-p8nuo1s0 2024-03-13T00:26:59,850 Entered build tracker: /tmp/pip-build-tracker-p8nuo1s0 2024-03-13T00:26:59,851 Created temporary directory: /tmp/pip-wheel-77see3yw 2024-03-13T00:26:59,854 Created temporary directory: /tmp/pip-ephem-wheel-cache-zetdjcif 2024-03-13T00:26:59,878 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-13T00:26:59,881 2 location(s) to search for versions of pub-worm: 2024-03-13T00:26:59,881 * https://pypi.org/simple/pub-worm/ 2024-03-13T00:26:59,881 * https://www.piwheels.org/simple/pub-worm/ 2024-03-13T00:26:59,882 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/ 2024-03-13T00:26:59,883 Getting page https://pypi.org/simple/pub-worm/ 2024-03-13T00:26:59,884 Found index url https://pypi.org/simple/ 2024-03-13T00:27:00,097 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json 2024-03-13T00:27:00,101 Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1 2024-03-13T00:27:00,101 Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1 2024-03-13T00:27:00,102 Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2 2024-03-13T00:27:00,103 Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3 2024-03-13T00:27:00,103 Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4 2024-03-13T00:27:00,104 Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5 2024-03-13T00:27:00,105 Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6 2024-03-13T00:27:00,105 Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7 2024-03-13T00:27:00,106 Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8 2024-03-13T00:27:00,107 Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9 2024-03-13T00:27:00,107 Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0 2024-03-13T00:27:00,108 Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1 2024-03-13T00:27:00,109 Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2 2024-03-13T00:27:00,109 Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3 2024-03-13T00:27:00,110 Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4 2024-03-13T00:27:00,112 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/ 2024-03-13T00:27:00,112 Getting page https://www.piwheels.org/simple/pub-worm/ 2024-03-13T00:27:00,113 Found index url https://www.piwheels.org/simple/ 2024-03-13T00:27:00,705 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html 2024-03-13T00:27:00,709 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,710 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,710 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,711 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,711 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,712 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,712 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,713 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,714 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,714 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,715 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,716 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,716 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,717 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-13T00:27:00,718 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/ 2024-03-13T00:27:00,718 Skipping link: not a file: https://pypi.org/simple/pub-worm/ 2024-03-13T00:27:00,738 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates 2024-03-13T00:27:00,756 Collecting pub-worm==0.2.4 2024-03-13T00:27:00,759 Created temporary directory: /tmp/pip-unpack-wam2mh_l 2024-03-13T00:27:01,191 Downloading pub_worm-0.2.4.tar.gz (385 kB) 2024-03-13T00:27:01,454 Added pub-worm==0.2.4 from https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-p8nuo1s0' 2024-03-13T00:27:01,456 Running setup.py (path:/tmp/pip-wheel-77see3yw/pub-worm_4987353ee41848848cd406e9288723d6/setup.py) egg_info for package pub-worm 2024-03-13T00:27:01,457 Created temporary directory: /tmp/pip-pip-egg-info-dtbkp0ki 2024-03-13T00:27:01,458 Preparing metadata (setup.py): started 2024-03-13T00:27:01,459 Running command python setup.py egg_info 2024-03-13T00:27:02,768 running egg_info 2024-03-13T00:27:02,770 creating /tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info 2024-03-13T00:27:02,795 writing /tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/PKG-INFO 2024-03-13T00:27:02,798 writing dependency_links to /tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/dependency_links.txt 2024-03-13T00:27:02,800 writing requirements to /tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/requires.txt 2024-03-13T00:27:02,801 writing top-level names to /tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/top_level.txt 2024-03-13T00:27:02,802 writing manifest file '/tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/SOURCES.txt' 2024-03-13T00:27:03,106 reading manifest file '/tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/SOURCES.txt' 2024-03-13T00:27:03,108 reading manifest template 'MANIFEST.in' 2024-03-13T00:27:03,111 writing manifest file '/tmp/pip-pip-egg-info-dtbkp0ki/pub_worm.egg-info/SOURCES.txt' 2024-03-13T00:27:03,219 Preparing metadata (setup.py): finished with status 'done' 2024-03-13T00:27:03,224 Source in /tmp/pip-wheel-77see3yw/pub-worm_4987353ee41848848cd406e9288723d6 has version 0.2.4, which satisfies requirement pub-worm==0.2.4 from https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz 2024-03-13T00:27:03,225 Removed pub-worm==0.2.4 from https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-p8nuo1s0' 2024-03-13T00:27:03,229 Created temporary directory: /tmp/pip-unpack-a3z3yqhu 2024-03-13T00:27:03,231 Created temporary directory: /tmp/pip-unpack-vyi2zbw5 2024-03-13T00:27:03,234 Building wheels for collected packages: pub-worm 2024-03-13T00:27:03,239 Created temporary directory: /tmp/pip-wheel-vtqya57h 2024-03-13T00:27:03,239 Building wheel for pub-worm (setup.py): started 2024-03-13T00:27:03,241 Destination directory: /tmp/pip-wheel-vtqya57h 2024-03-13T00:27:03,241 Running command python setup.py bdist_wheel 2024-03-13T00:27:04,262 running bdist_wheel 2024-03-13T00:27:04,358 running build 2024-03-13T00:27:04,358 running build_py 2024-03-13T00:27:04,386 creating build 2024-03-13T00:27:04,386 creating build/lib 2024-03-13T00:27:04,387 creating build/lib/pub_worm 2024-03-13T00:27:04,388 copying pub_worm/__init__.py -> build/lib/pub_worm 2024-03-13T00:27:04,391 creating build/lib/pub_worm/ncbi 2024-03-13T00:27:04,392 copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi 2024-03-13T00:27:04,394 copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi 2024-03-13T00:27:04,396 creating build/lib/pub_worm/wormbase 2024-03-13T00:27:04,397 copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase 2024-03-13T00:27:04,399 copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase 2024-03-13T00:27:04,401 copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase 2024-03-13T00:27:04,403 creating build/lib/pub_worm/impact_factor 2024-03-13T00:27:04,404 copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor 2024-03-13T00:27:04,406 copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor 2024-03-13T00:27:04,407 running egg_info 2024-03-13T00:27:04,463 writing pub_worm.egg-info/PKG-INFO 2024-03-13T00:27:04,465 writing dependency_links to pub_worm.egg-info/dependency_links.txt 2024-03-13T00:27:04,467 writing requirements to pub_worm.egg-info/requires.txt 2024-03-13T00:27:04,468 writing top-level names to pub_worm.egg-info/top_level.txt 2024-03-13T00:27:04,496 reading manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-13T00:27:04,499 reading manifest template 'MANIFEST.in' 2024-03-13T00:27:04,503 writing manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-13T00:27:04,505 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration. 2024-03-13T00:27:04,505 !! 2024-03-13T00:27:04,507 ******************************************************************************** 2024-03-13T00:27:04,507 ############################ 2024-03-13T00:27:04,508 # Package would be ignored # 2024-03-13T00:27:04,508 ############################ 2024-03-13T00:27:04,509 Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1], 2024-03-13T00:27:04,509 but it is absent from setuptools' `packages` configuration. 2024-03-13T00:27:04,510 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-13T00:27:04,511 package, please make sure that 'pub_worm.impact_factor.data' is explicitly added 2024-03-13T00:27:04,511 to the `packages` configuration field. 2024-03-13T00:27:04,512 Alternatively, you can also rely on setuptools' discovery methods 2024-03-13T00:27:04,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-13T00:27:04,513 instead of `find_packages(...)`/`find:`). 2024-03-13T00:27:04,514 You can read more about "package discovery" on setuptools documentation page: 2024-03-13T00:27:04,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-13T00:27:04,516 If you don't want 'pub_worm.impact_factor.data' to be distributed and are 2024-03-13T00:27:04,517 already explicitly excluding 'pub_worm.impact_factor.data' via 2024-03-13T00:27:04,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-13T00:27:04,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-13T00:27:04,518 combination with a more fine grained `package-data` configuration. 2024-03-13T00:27:04,519 You can read more about "package data files" on setuptools documentation page: 2024-03-13T00:27:04,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-13T00:27:04,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-13T00:27:04,523 even if it does not contain any `.py` files. 2024-03-13T00:27:04,523 On the other hand, currently there is no concept of package data 2024-03-13T00:27:04,524 directory, all directories are treated like packages. 2024-03-13T00:27:04,524 ******************************************************************************** 2024-03-13T00:27:04,526 !! 2024-03-13T00:27:04,526 check.warn(importable) 2024-03-13T00:27:04,527 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.ncbi.data' is absent from the `packages` configuration. 2024-03-13T00:27:04,527 !! 2024-03-13T00:27:04,528 ******************************************************************************** 2024-03-13T00:27:04,528 ############################ 2024-03-13T00:27:04,529 # Package would be ignored # 2024-03-13T00:27:04,529 ############################ 2024-03-13T00:27:04,530 Python recognizes 'pub_worm.ncbi.data' as an importable package[^1], 2024-03-13T00:27:04,530 but it is absent from setuptools' `packages` configuration. 2024-03-13T00:27:04,531 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-13T00:27:04,532 package, please make sure that 'pub_worm.ncbi.data' is explicitly added 2024-03-13T00:27:04,532 to the `packages` configuration field. 2024-03-13T00:27:04,533 Alternatively, you can also rely on setuptools' discovery methods 2024-03-13T00:27:04,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-13T00:27:04,536 instead of `find_packages(...)`/`find:`). 2024-03-13T00:27:04,550 You can read more about "package discovery" on setuptools documentation page: 2024-03-13T00:27:04,552 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-13T00:27:04,553 If you don't want 'pub_worm.ncbi.data' to be distributed and are 2024-03-13T00:27:04,553 already explicitly excluding 'pub_worm.ncbi.data' via 2024-03-13T00:27:04,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-13T00:27:04,554 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-13T00:27:04,555 combination with a more fine grained `package-data` configuration. 2024-03-13T00:27:04,556 You can read more about "package data files" on setuptools documentation page: 2024-03-13T00:27:04,557 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-13T00:27:04,559 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-13T00:27:04,560 even if it does not contain any `.py` files. 2024-03-13T00:27:04,560 On the other hand, currently there is no concept of package data 2024-03-13T00:27:04,561 directory, all directories are treated like packages. 2024-03-13T00:27:04,561 ******************************************************************************** 2024-03-13T00:27:04,563 !! 2024-03-13T00:27:04,563 check.warn(importable) 2024-03-13T00:27:04,564 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration. 2024-03-13T00:27:04,564 !! 2024-03-13T00:27:04,565 ******************************************************************************** 2024-03-13T00:27:04,566 ############################ 2024-03-13T00:27:04,566 # Package would be ignored # 2024-03-13T00:27:04,567 ############################ 2024-03-13T00:27:04,568 Python recognizes 'pub_worm.wormbase.data' as an importable package[^1], 2024-03-13T00:27:04,568 but it is absent from setuptools' `packages` configuration. 2024-03-13T00:27:04,569 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-13T00:27:04,570 package, please make sure that 'pub_worm.wormbase.data' is explicitly added 2024-03-13T00:27:04,570 to the `packages` configuration field. 2024-03-13T00:27:04,572 Alternatively, you can also rely on setuptools' discovery methods 2024-03-13T00:27:04,572 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-13T00:27:04,573 instead of `find_packages(...)`/`find:`). 2024-03-13T00:27:04,574 You can read more about "package discovery" on setuptools documentation page: 2024-03-13T00:27:04,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-13T00:27:04,576 If you don't want 'pub_worm.wormbase.data' to be distributed and are 2024-03-13T00:27:04,576 already explicitly excluding 'pub_worm.wormbase.data' via 2024-03-13T00:27:04,577 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-13T00:27:04,577 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-13T00:27:04,578 combination with a more fine grained `package-data` configuration. 2024-03-13T00:27:04,578 You can read more about "package data files" on setuptools documentation page: 2024-03-13T00:27:04,579 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-13T00:27:04,581 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-13T00:27:04,581 even if it does not contain any `.py` files. 2024-03-13T00:27:04,582 On the other hand, currently there is no concept of package data 2024-03-13T00:27:04,582 directory, all directories are treated like packages. 2024-03-13T00:27:04,583 ******************************************************************************** 2024-03-13T00:27:04,584 !! 2024-03-13T00:27:04,584 check.warn(importable) 2024-03-13T00:27:04,585 creating build/lib/pub_worm/ncbi/data 2024-03-13T00:27:04,585 copying pub_worm/ncbi/data/ncbi_efetch.json -> build/lib/pub_worm/ncbi/data 2024-03-13T00:27:04,586 copying pub_worm/ncbi/data/ncbi_esearch.json -> build/lib/pub_worm/ncbi/data 2024-03-13T00:27:04,586 copying pub_worm/ncbi/data/ncbi_esummary.json -> build/lib/pub_worm/ncbi/data 2024-03-13T00:27:04,587 creating build/lib/pub_worm/wormbase/data 2024-03-13T00:27:04,587 copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-13T00:27:04,588 copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data 2024-03-13T00:27:04,589 copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-13T00:27:04,589 creating build/lib/pub_worm/impact_factor/data 2024-03-13T00:27:04,590 copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data 2024-03-13T00:27:04,593 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-13T00:27:04,594 !! 2024-03-13T00:27:04,595 ******************************************************************************** 2024-03-13T00:27:04,595 Please avoid running ``setup.py`` directly. 2024-03-13T00:27:04,596 Instead, use pypa/build, pypa/installer or other 2024-03-13T00:27:04,596 standards-based tools. 2024-03-13T00:27:04,598 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-13T00:27:04,598 ******************************************************************************** 2024-03-13T00:27:04,599 !! 2024-03-13T00:27:04,600 self.initialize_options() 2024-03-13T00:27:04,619 installing to build/bdist.linux-armv7l/wheel 2024-03-13T00:27:04,620 running install 2024-03-13T00:27:04,644 running install_lib 2024-03-13T00:27:04,670 creating build/bdist.linux-armv7l 2024-03-13T00:27:04,671 creating build/bdist.linux-armv7l/wheel 2024-03-13T00:27:04,672 creating build/bdist.linux-armv7l/wheel/pub_worm 2024-03-13T00:27:04,674 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-13T00:27:04,675 copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-13T00:27:04,677 copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-13T00:27:04,680 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-13T00:27:04,681 copying build/lib/pub_worm/ncbi/data/ncbi_efetch.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-13T00:27:04,683 copying build/lib/pub_worm/ncbi/data/ncbi_esearch.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-13T00:27:04,685 copying build/lib/pub_worm/ncbi/data/ncbi_esummary.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-13T00:27:04,687 copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm 2024-03-13T00:27:04,689 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-13T00:27:04,690 copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-13T00:27:04,693 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-13T00:27:04,694 copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-13T00:27:04,697 copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-13T00:27:04,699 copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-13T00:27:04,701 copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-13T00:27:04,703 copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-13T00:27:04,705 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-13T00:27:04,706 copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-13T00:27:04,708 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-13T00:27:04,709 copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-13T00:27:04,741 copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-13T00:27:04,743 running install_egg_info 2024-03-13T00:27:04,773 Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/pub_worm-0.2.4-py3.11.egg-info 2024-03-13T00:27:04,785 running install_scripts 2024-03-13T00:27:04,797 creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.4.dist-info/WHEEL 2024-03-13T00:27:04,799 creating '/tmp/pip-wheel-vtqya57h/pub_worm-0.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-13T00:27:04,802 adding 'pub_worm/__init__.py' 2024-03-13T00:27:04,804 adding 'pub_worm/impact_factor/__init__.py' 2024-03-13T00:27:04,805 adding 'pub_worm/impact_factor/impact_factor_lookup.py' 2024-03-13T00:27:04,971 adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv' 2024-03-13T00:27:04,981 adding 'pub_worm/ncbi/__init__.py' 2024-03-13T00:27:04,983 adding 'pub_worm/ncbi/entreze_api.py' 2024-03-13T00:27:04,985 adding 'pub_worm/ncbi/data/ncbi_efetch.json' 2024-03-13T00:27:04,987 adding 'pub_worm/ncbi/data/ncbi_esearch.json' 2024-03-13T00:27:04,988 adding 'pub_worm/ncbi/data/ncbi_esummary.json' 2024-03-13T00:27:04,991 adding 'pub_worm/wormbase/__init__.py' 2024-03-13T00:27:04,992 adding 'pub_worm/wormbase/to_csv_helpers.py' 2024-03-13T00:27:04,994 adding 'pub_worm/wormbase/wormbase_api.py' 2024-03-13T00:27:04,997 adding 'pub_worm/wormbase/data/wormbase_field_gene.json' 2024-03-13T00:27:04,998 adding 'pub_worm/wormbase/data/wormbase_field_paper.json' 2024-03-13T00:27:05,000 adding 'pub_worm/wormbase/data/wormbase_widget_gene.json' 2024-03-13T00:27:05,003 adding 'pub_worm-0.2.4.dist-info/METADATA' 2024-03-13T00:27:05,005 adding 'pub_worm-0.2.4.dist-info/WHEEL' 2024-03-13T00:27:05,007 adding 'pub_worm-0.2.4.dist-info/top_level.txt' 2024-03-13T00:27:05,008 adding 'pub_worm-0.2.4.dist-info/RECORD' 2024-03-13T00:27:05,015 removing build/bdist.linux-armv7l/wheel 2024-03-13T00:27:05,139 Building wheel for pub-worm (setup.py): finished with status 'done' 2024-03-13T00:27:05,145 Created wheel for pub-worm: filename=pub_worm-0.2.4-py3-none-any.whl size=389851 sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc 2024-03-13T00:27:05,146 Stored in directory: /tmp/pip-ephem-wheel-cache-zetdjcif/wheels/ae/52/26/7b211f4bd82fe4606ab59d37b40457f8bc10e005f56e11f1c2 2024-03-13T00:27:05,155 Successfully built pub-worm 2024-03-13T00:27:05,206 Removed build tracker: '/tmp/pip-build-tracker-p8nuo1s0'