2024-03-14T23:37:52,630 Created temporary directory: /tmp/pip-build-tracker-2c1b20ul
2024-03-14T23:37:52,632 Initialized build tracking at /tmp/pip-build-tracker-2c1b20ul
2024-03-14T23:37:52,632 Created build tracker: /tmp/pip-build-tracker-2c1b20ul
2024-03-14T23:37:52,632 Entered build tracker: /tmp/pip-build-tracker-2c1b20ul
2024-03-14T23:37:52,633 Created temporary directory: /tmp/pip-wheel-jdpmgvur
2024-03-14T23:37:52,637 Created temporary directory: /tmp/pip-ephem-wheel-cache-zv9jxvu4
2024-03-14T23:37:52,661 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-14T23:37:52,665 2 location(s) to search for versions of scbamtools:
2024-03-14T23:37:52,665 * https://pypi.org/simple/scbamtools/
2024-03-14T23:37:52,665 * https://www.piwheels.org/simple/scbamtools/
2024-03-14T23:37:52,665 Fetching project page and analyzing links: https://pypi.org/simple/scbamtools/
2024-03-14T23:37:52,666 Getting page https://pypi.org/simple/scbamtools/
2024-03-14T23:37:52,668 Found index url https://pypi.org/simple/
2024-03-14T23:37:52,719 Fetched page https://pypi.org/simple/scbamtools/ as application/vnd.pypi.simple.v1+json
2024-03-14T23:37:52,721   Link requires a different Python (3.9.2 not in: '>=3.10'): https://files.pythonhosted.org/packages/90/98/a7355f2097b73330b58718e0c6e83ee7b93bee0d6a00a010db3eaea2fbd5/scbamtools-0.1.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10)
2024-03-14T23:37:52,721   Skipping link: 0.1 Requires-Python >=3.10: https://files.pythonhosted.org/packages/90/98/a7355f2097b73330b58718e0c6e83ee7b93bee0d6a00a010db3eaea2fbd5/scbamtools-0.1.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10)
2024-03-14T23:37:52,722   Link requires a different Python (3.9.2 not in: '>=3.10'): https://files.pythonhosted.org/packages/24/fa/fd646836da42c49f38967ac48eaf7b6e360da3f50b94a305ef06f093a6ba/scbamtools-0.2.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10)
2024-03-14T23:37:52,722   Skipping link: 0.2 Requires-Python >=3.10: https://files.pythonhosted.org/packages/24/fa/fd646836da42c49f38967ac48eaf7b6e360da3f50b94a305ef06f093a6ba/scbamtools-0.2.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.10)
2024-03-14T23:37:52,723   Found link https://files.pythonhosted.org/packages/60/fe/4740173cbc7a3bc2c6b041d19db568741f4e5339a3bb12951bb652467fd1/scbamtools-0.5.tar.gz (from https://pypi.org/simple/scbamtools/) (requires-python:>=3.8), version: 0.5
2024-03-14T23:37:52,723 Fetching project page and analyzing links: https://www.piwheels.org/simple/scbamtools/
2024-03-14T23:37:52,723 Getting page https://www.piwheels.org/simple/scbamtools/
2024-03-14T23:37:52,724 Found index url https://www.piwheels.org/simple/
2024-03-14T23:37:53,115 Fetched page https://www.piwheels.org/simple/scbamtools/ as text/html
2024-03-14T23:37:53,116   Skipping link: No binaries permitted for scbamtools: https://www.piwheels.org/simple/scbamtools/scbamtools-0.5-cp311-cp311-linux_armv6l.whl#sha256=9eeb10371047b47673bf1fa28614f1f47c0b6089fd1cf486ed8be089efd51140 (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8)
2024-03-14T23:37:53,116   Skipping link: No binaries permitted for scbamtools: https://www.piwheels.org/simple/scbamtools/scbamtools-0.5-cp311-cp311-linux_armv7l.whl#sha256=9eeb10371047b47673bf1fa28614f1f47c0b6089fd1cf486ed8be089efd51140 (from https://www.piwheels.org/simple/scbamtools/) (requires-python:>=3.8)
2024-03-14T23:37:53,117 Skipping link: not a file: https://www.piwheels.org/simple/scbamtools/
2024-03-14T23:37:53,117 Skipping link: not a file: https://pypi.org/simple/scbamtools/
2024-03-14T23:37:53,133 Given no hashes to check 1 links for project 'scbamtools': discarding no candidates
2024-03-14T23:37:53,148 Collecting scbamtools==0.5
2024-03-14T23:37:53,151   Created temporary directory: /tmp/pip-unpack-9wtp3y7u
2024-03-14T23:37:53,197   Downloading scbamtools-0.5.tar.gz (374 kB)
2024-03-14T23:37:53,441   Added scbamtools==0.5 from https://files.pythonhosted.org/packages/60/fe/4740173cbc7a3bc2c6b041d19db568741f4e5339a3bb12951bb652467fd1/scbamtools-0.5.tar.gz to build tracker '/tmp/pip-build-tracker-2c1b20ul'
2024-03-14T23:37:53,448   Created temporary directory: /tmp/pip-build-env-zyuh1zi6
2024-03-14T23:37:53,458   Installing build dependencies: started
2024-03-14T23:37:53,459   Running command pip subprocess to install build dependencies
2024-03-14T23:37:54,624   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-03-14T23:37:55,152   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-14T23:37:57,211   Collecting setuptools>=65.5.1
2024-03-14T23:37:57,662     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB)
2024-03-14T23:37:57,953   Collecting wheel
2024-03-14T23:38:00,147     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-03-14T23:38:02,665   Collecting cython>=3.0.8
2024-03-14T23:38:04,113     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-03-14T23:38:05,488   Collecting numpy
2024-03-14T23:38:07,025     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-03-14T23:38:09,112   Installing collected packages: wheel, setuptools, numpy, cython
2024-03-14T23:38:09,334     Creating /tmp/pip-build-env-zyuh1zi6/overlay/bin
2024-03-14T23:38:09,336     changing mode of /tmp/pip-build-env-zyuh1zi6/overlay/bin/wheel to 755
2024-03-14T23:38:19,243     changing mode of /tmp/pip-build-env-zyuh1zi6/overlay/bin/f2py to 755
2024-03-14T23:38:22,637     changing mode of /tmp/pip-build-env-zyuh1zi6/overlay/bin/cygdb to 755
2024-03-14T23:38:22,640     changing mode of /tmp/pip-build-env-zyuh1zi6/overlay/bin/cython to 755
2024-03-14T23:38:22,643     changing mode of /tmp/pip-build-env-zyuh1zi6/overlay/bin/cythonize to 755
2024-03-14T23:38:22,665   Successfully installed cython-3.0.9 numpy-1.26.4 setuptools-69.2.0 wheel-0.43.0
2024-03-14T23:38:23,311   Installing build dependencies: finished with status 'done'
2024-03-14T23:38:23,316   Getting requirements to build wheel: started
2024-03-14T23:38:23,317   Running command Getting requirements to build wheel
2024-03-14T23:38:27,051   warning: scbamtools/cython/bctree.pyx:155:15: Assigning to 'bc_info_t *' from 'const bc_info_t *' discards const qualifier
2024-03-14T23:38:31,314   Compiling scbamtools/cython/kmers.pyx because it depends on /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-14T23:38:31,314   Compiling scbamtools/cython/bctree.pyx because it depends on /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-14T23:38:31,314   [1/2] Cythonizing scbamtools/cython/bctree.pyx
2024-03-14T23:38:31,314   [2/2] Cythonizing scbamtools/cython/kmers.pyx
2024-03-14T23:38:31,482   /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2024-03-14T23:38:31,482     corresp(dist, value, root_dir)
2024-03-14T23:38:31,742   running egg_info
2024-03-14T23:38:31,748   writing scbamtools.egg-info/PKG-INFO
2024-03-14T23:38:31,751   writing dependency_links to scbamtools.egg-info/dependency_links.txt
2024-03-14T23:38:31,753   writing requirements to scbamtools.egg-info/requires.txt
2024-03-14T23:38:31,754   writing top-level names to scbamtools.egg-info/top_level.txt
2024-03-14T23:38:31,779   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,780   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,780   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,780   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,780   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,780   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,780   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,781   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,781   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,781   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:31,786   reading manifest file 'scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:31,788   reading manifest template 'MANIFEST.in'
2024-03-14T23:38:31,791   adding license file 'LICENSE'
2024-03-14T23:38:31,794   writing manifest file 'scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:32,419   Getting requirements to build wheel: finished with status 'done'
2024-03-14T23:38:32,428   Created temporary directory: /tmp/pip-modern-metadata-_ozg5hup
2024-03-14T23:38:32,431   Preparing metadata (pyproject.toml): started
2024-03-14T23:38:32,432   Running command Preparing metadata (pyproject.toml)
2024-03-14T23:38:34,067   /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2024-03-14T23:38:34,067     corresp(dist, value, root_dir)
2024-03-14T23:38:34,311   running dist_info
2024-03-14T23:38:34,318   creating /tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info
2024-03-14T23:38:34,323   writing /tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/PKG-INFO
2024-03-14T23:38:34,327   writing dependency_links to /tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/dependency_links.txt
2024-03-14T23:38:34,329   writing requirements to /tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/requires.txt
2024-03-14T23:38:34,330   writing top-level names to /tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/top_level.txt
2024-03-14T23:38:34,332   writing manifest file '/tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:34,354   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,354   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,354   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,354   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,354   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,354   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,355   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,355   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,355   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,355   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:34,360   reading manifest file '/tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:34,362   reading manifest template 'MANIFEST.in'
2024-03-14T23:38:34,365   adding license file 'LICENSE'
2024-03-14T23:38:34,367   writing manifest file '/tmp/pip-modern-metadata-_ozg5hup/scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:34,368   creating '/tmp/pip-modern-metadata-_ozg5hup/scbamtools-0.5.dist-info'
2024-03-14T23:38:34,558   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-14T23:38:34,564   Source in /tmp/pip-wheel-jdpmgvur/scbamtools_7b50e63d92bc44b497ea64d343274c6e has version 0.5, which satisfies requirement scbamtools==0.5 from https://files.pythonhosted.org/packages/60/fe/4740173cbc7a3bc2c6b041d19db568741f4e5339a3bb12951bb652467fd1/scbamtools-0.5.tar.gz
2024-03-14T23:38:34,565   Removed scbamtools==0.5 from https://files.pythonhosted.org/packages/60/fe/4740173cbc7a3bc2c6b041d19db568741f4e5339a3bb12951bb652467fd1/scbamtools-0.5.tar.gz from build tracker '/tmp/pip-build-tracker-2c1b20ul'
2024-03-14T23:38:34,571 Created temporary directory: /tmp/pip-unpack-hocfumn_
2024-03-14T23:38:34,572 Created temporary directory: /tmp/pip-unpack-nnw__itr
2024-03-14T23:38:34,578 Building wheels for collected packages: scbamtools
2024-03-14T23:38:34,582   Created temporary directory: /tmp/pip-wheel-i_turdki
2024-03-14T23:38:34,583   Destination directory: /tmp/pip-wheel-i_turdki
2024-03-14T23:38:34,585   Building wheel for scbamtools (pyproject.toml): started
2024-03-14T23:38:34,586   Running command Building wheel for scbamtools (pyproject.toml)
2024-03-14T23:38:36,167   /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:83: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2024-03-14T23:38:36,167     corresp(dist, value, root_dir)
2024-03-14T23:38:36,393   running bdist_wheel
2024-03-14T23:38:36,416   running build
2024-03-14T23:38:36,417   running build_py
2024-03-14T23:38:36,423   creating build
2024-03-14T23:38:36,423   creating build/lib.linux-armv7l-cpython-39
2024-03-14T23:38:36,425   creating build/lib.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,426   copying scbamtools/quant.py -> build/lib.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,429   copying scbamtools/contrib.py -> build/lib.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,430   copying scbamtools/annotation.py -> build/lib.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,433   copying scbamtools/bctree.py -> build/lib.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,435   copying scbamtools/util.py -> build/lib.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,438   creating build/lib.linux-armv7l-cpython-39/scbamtools/bin
2024-03-14T23:38:36,439   copying scbamtools/bin/ann.py -> build/lib.linux-armv7l-cpython-39/scbamtools/bin
2024-03-14T23:38:36,441   copying scbamtools/bin/trim.py -> build/lib.linux-armv7l-cpython-39/scbamtools/bin
2024-03-14T23:38:36,444   copying scbamtools/bin/BamTagHistogram.py -> build/lib.linux-armv7l-cpython-39/scbamtools/bin
2024-03-14T23:38:36,446   copying scbamtools/bin/uBAM.py -> build/lib.linux-armv7l-cpython-39/scbamtools/bin
2024-03-14T23:38:36,448   copying scbamtools/bin/count.py -> build/lib.linux-armv7l-cpython-39/scbamtools/bin
2024-03-14T23:38:36,450   creating build/lib.linux-armv7l-cpython-39/scbamtools/config
2024-03-14T23:38:36,451   copying scbamtools/config/__init__.py -> build/lib.linux-armv7l-cpython-39/scbamtools/config
2024-03-14T23:38:36,453   running egg_info
2024-03-14T23:38:36,458   writing scbamtools.egg-info/PKG-INFO
2024-03-14T23:38:36,461   writing dependency_links to scbamtools.egg-info/dependency_links.txt
2024-03-14T23:38:36,462   writing requirements to scbamtools.egg-info/requires.txt
2024-03-14T23:38:36,463   writing top-level names to scbamtools.egg-info/top_level.txt
2024-03-14T23:38:36,472   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,472   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,472   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,472   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,472   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,472   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,473   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,473   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,473   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,473   dependency /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-14T23:38:36,478   reading manifest file 'scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:36,480   reading manifest template 'MANIFEST.in'
2024-03-14T23:38:36,482   adding license file 'LICENSE'
2024-03-14T23:38:36,486   writing manifest file 'scbamtools.egg-info/SOURCES.txt'
2024-03-14T23:38:36,490   creating build/lib.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,491   copying scbamtools/cython/bctree.c -> build/lib.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,512   copying scbamtools/cython/bctree.pyx -> build/lib.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,514   copying scbamtools/cython/kmers.c -> build/lib.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,538   copying scbamtools/cython/kmers.pyx -> build/lib.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,541   copying scbamtools/cython/types.pxd -> build/lib.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,542   copying scbamtools/config/default.yaml -> build/lib.linux-armv7l-cpython-39/scbamtools/config
2024-03-14T23:38:36,546   running build_ext
2024-03-14T23:38:36,553   building 'scbamtools.cython.kmers' extension
2024-03-14T23:38:36,554   creating build/temp.linux-armv7l-cpython-39
2024-03-14T23:38:36,555   creating build/temp.linux-armv7l-cpython-39/scbamtools
2024-03-14T23:38:36,556   creating build/temp.linux-armv7l-cpython-39/scbamtools/cython
2024-03-14T23:38:36,557   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c scbamtools/cython/kmers.c -o build/temp.linux-armv7l-cpython-39/scbamtools/cython/kmers.o
2024-03-14T23:38:36,896   In file included from /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-14T23:38:36,896                    from /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-14T23:38:36,897                    from /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-14T23:38:36,897                    from scbamtools/cython/kmers.c:1219:
2024-03-14T23:38:36,897   /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-14T23:38:36,897      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-14T23:38:36,897         |  ^~~~~~~
2024-03-14T23:39:00,821   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/scbamtools/cython/kmers.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/scbamtools/cython/kmers.cpython-39-arm-linux-gnueabihf.so
2024-03-14T23:39:00,974   building 'scbamtools.cython.bctree' extension
2024-03-14T23:39:00,975   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c scbamtools/cython/bctree.c -o build/temp.linux-armv7l-cpython-39/scbamtools/cython/bctree.o
2024-03-14T23:39:01,290   In file included from /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-14T23:39:01,291                    from /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-14T23:39:01,291                    from /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-14T23:39:01,291                    from scbamtools/cython/bctree.c:1219:
2024-03-14T23:39:01,291   /tmp/pip-build-env-zyuh1zi6/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-14T23:39:01,292      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-14T23:39:01,292         |  ^~~~~~~
2024-03-14T23:39:01,585   scbamtools/cython/bctree.c: In function ‘__pyx_f_10scbamtools_6cython_6bctree_check_contains’:
2024-03-14T23:39:01,596   scbamtools/cython/bctree.c:21777:18: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2024-03-14T23:39:01,596   21777 |     __pyx_v_node = (&(*((struct __pyx_t_10scbamtools_6cython_6bctree_bc_info_t const  *) ( /* dim=0 */ (__pyx_v_buf.data + __pyx_t_2 * __pyx_v_buf.strides[0]) ))));
2024-03-14T23:39:01,596         |                  ^
2024-03-14T23:39:25,125   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/scbamtools/cython/bctree.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/scbamtools/cython/bctree.cpython-39-arm-linux-gnueabihf.so
2024-03-14T23:39:25,286   installing to build/bdist.linux-armv7l/wheel
2024-03-14T23:39:25,286   running install
2024-03-14T23:39:25,311   running install_lib
2024-03-14T23:39:25,317   creating build/bdist.linux-armv7l
2024-03-14T23:39:25,318   creating build/bdist.linux-armv7l/wheel
2024-03-14T23:39:25,319   creating build/bdist.linux-armv7l/wheel/scbamtools
2024-03-14T23:39:25,320   copying build/lib.linux-armv7l-cpython-39/scbamtools/quant.py -> build/bdist.linux-armv7l/wheel/scbamtools
2024-03-14T23:39:25,323   copying build/lib.linux-armv7l-cpython-39/scbamtools/contrib.py -> build/bdist.linux-armv7l/wheel/scbamtools
2024-03-14T23:39:25,325   creating build/bdist.linux-armv7l/wheel/scbamtools/config
2024-03-14T23:39:25,326   copying build/lib.linux-armv7l-cpython-39/scbamtools/config/__init__.py -> build/bdist.linux-armv7l/wheel/scbamtools/config
2024-03-14T23:39:25,327   copying build/lib.linux-armv7l-cpython-39/scbamtools/config/default.yaml -> build/bdist.linux-armv7l/wheel/scbamtools/config
2024-03-14T23:39:25,329   copying build/lib.linux-armv7l-cpython-39/scbamtools/annotation.py -> build/bdist.linux-armv7l/wheel/scbamtools
2024-03-14T23:39:25,332   creating build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,333   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/bctree.pyx -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,335   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/bctree.c -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,358   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/kmers.c -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,379   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/types.pxd -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,381   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/bctree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,399   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/kmers.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,418   copying build/lib.linux-armv7l-cpython-39/scbamtools/cython/kmers.pyx -> build/bdist.linux-armv7l/wheel/scbamtools/cython
2024-03-14T23:39:25,420   copying build/lib.linux-armv7l-cpython-39/scbamtools/bctree.py -> build/bdist.linux-armv7l/wheel/scbamtools
2024-03-14T23:39:25,422   copying build/lib.linux-armv7l-cpython-39/scbamtools/util.py -> build/bdist.linux-armv7l/wheel/scbamtools
2024-03-14T23:39:25,424   creating build/bdist.linux-armv7l/wheel/scbamtools/bin
2024-03-14T23:39:25,425   copying build/lib.linux-armv7l-cpython-39/scbamtools/bin/ann.py -> build/bdist.linux-armv7l/wheel/scbamtools/bin
2024-03-14T23:39:25,428   copying build/lib.linux-armv7l-cpython-39/scbamtools/bin/trim.py -> build/bdist.linux-armv7l/wheel/scbamtools/bin
2024-03-14T23:39:25,430   copying build/lib.linux-armv7l-cpython-39/scbamtools/bin/BamTagHistogram.py -> build/bdist.linux-armv7l/wheel/scbamtools/bin
2024-03-14T23:39:25,432   copying build/lib.linux-armv7l-cpython-39/scbamtools/bin/uBAM.py -> build/bdist.linux-armv7l/wheel/scbamtools/bin
2024-03-14T23:39:25,434   copying build/lib.linux-armv7l-cpython-39/scbamtools/bin/count.py -> build/bdist.linux-armv7l/wheel/scbamtools/bin
2024-03-14T23:39:25,436   running install_egg_info
2024-03-14T23:39:25,441   Copying scbamtools.egg-info to build/bdist.linux-armv7l/wheel/scbamtools-0.5-py3.9.egg-info
2024-03-14T23:39:25,453   running install_scripts
2024-03-14T23:39:25,498   creating build/bdist.linux-armv7l/wheel/scbamtools-0.5.dist-info/WHEEL
2024-03-14T23:39:25,501   creating '/tmp/pip-wheel-i_turdki/.tmp-tteag1f2/scbamtools-0.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-14T23:39:25,506   adding 'scbamtools/annotation.py'
2024-03-14T23:39:25,507   adding 'scbamtools/bctree.py'
2024-03-14T23:39:25,509   adding 'scbamtools/contrib.py'
2024-03-14T23:39:25,512   adding 'scbamtools/quant.py'
2024-03-14T23:39:25,513   adding 'scbamtools/util.py'
2024-03-14T23:39:25,515   adding 'scbamtools/bin/BamTagHistogram.py'
2024-03-14T23:39:25,518   adding 'scbamtools/bin/ann.py'
2024-03-14T23:39:25,520   adding 'scbamtools/bin/count.py'
2024-03-14T23:39:25,522   adding 'scbamtools/bin/trim.py'
2024-03-14T23:39:25,524   adding 'scbamtools/bin/uBAM.py'
2024-03-14T23:39:25,526   adding 'scbamtools/config/__init__.py'
2024-03-14T23:39:25,527   adding 'scbamtools/config/default.yaml'
2024-03-14T23:39:25,642   adding 'scbamtools/cython/bctree.c'
2024-03-14T23:39:25,895   adding 'scbamtools/cython/bctree.cpython-39-arm-linux-gnueabihf.so'
2024-03-14T23:39:25,904   adding 'scbamtools/cython/bctree.pyx'
2024-03-14T23:39:26,005   adding 'scbamtools/cython/kmers.c'
2024-03-14T23:39:26,236   adding 'scbamtools/cython/kmers.cpython-39-arm-linux-gnueabihf.so'
2024-03-14T23:39:26,244   adding 'scbamtools/cython/kmers.pyx'
2024-03-14T23:39:26,246   adding 'scbamtools/cython/types.pxd'
2024-03-14T23:39:26,248   adding 'scbamtools-0.5.dist-info/LICENSE'
2024-03-14T23:39:26,249   adding 'scbamtools-0.5.dist-info/METADATA'
2024-03-14T23:39:26,250   adding 'scbamtools-0.5.dist-info/WHEEL'
2024-03-14T23:39:26,251   adding 'scbamtools-0.5.dist-info/top_level.txt'
2024-03-14T23:39:26,252   adding 'scbamtools-0.5.dist-info/RECORD'
2024-03-14T23:39:26,266   removing build/bdist.linux-armv7l/wheel
2024-03-14T23:39:26,451   Building wheel for scbamtools (pyproject.toml): finished with status 'done'
2024-03-14T23:39:26,480   Created wheel for scbamtools: filename=scbamtools-0.5-cp39-cp39-linux_armv7l.whl size=1205218 sha256=44ad821dcd492f55a691e24b59160b6016e170304ae897bde1333049698ef26b
2024-03-14T23:39:26,481   Stored in directory: /tmp/pip-ephem-wheel-cache-zv9jxvu4/wheels/50/5b/d6/eed2c26cbf7763da4a2b03ba6e4725aa3b5001c409f2ec7013
2024-03-14T23:39:26,493 Successfully built scbamtools
2024-03-14T23:39:26,534 Removed build tracker: '/tmp/pip-build-tracker-2c1b20ul'