2024-03-15T13:51:50,053 Created temporary directory: /tmp/pip-build-tracker-an9shbn3 2024-03-15T13:51:50,054 Initialized build tracking at /tmp/pip-build-tracker-an9shbn3 2024-03-15T13:51:50,055 Created build tracker: /tmp/pip-build-tracker-an9shbn3 2024-03-15T13:51:50,055 Entered build tracker: /tmp/pip-build-tracker-an9shbn3 2024-03-15T13:51:50,056 Created temporary directory: /tmp/pip-wheel-xlloxgze 2024-03-15T13:51:50,060 Created temporary directory: /tmp/pip-ephem-wheel-cache-t3ij177t 2024-03-15T13:51:50,083 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-15T13:51:50,087 2 location(s) to search for versions of detelpy: 2024-03-15T13:51:50,087 * https://pypi.org/simple/detelpy/ 2024-03-15T13:51:50,087 * https://www.piwheels.org/simple/detelpy/ 2024-03-15T13:51:50,087 Fetching project page and analyzing links: https://pypi.org/simple/detelpy/ 2024-03-15T13:51:50,088 Getting page https://pypi.org/simple/detelpy/ 2024-03-15T13:51:50,090 Found index url https://pypi.org/simple/ 2024-03-15T13:51:50,302 Fetched page https://pypi.org/simple/detelpy/ as application/vnd.pypi.simple.v1+json 2024-03-15T13:51:50,306 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/db/f9/bc0dbec2a4d6d1475932b7518ac63d64ac81049b434e198db8656ab425bd/deTELpy-0.1.5-py2.py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,306 Found link https://files.pythonhosted.org/packages/22/3f/15466cf4b2595b7246b62925f94053b5eda33ebb45ee42beca9aaac8b019/deTELpy-0.1.5.tar.gz (from https://pypi.org/simple/detelpy/), version: 0.1.5 2024-03-15T13:51:50,307 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/c8/ad/0100ba6927059fc7031a30f462869e66bb536cd6668ede497a9950b38043/deTELpy-0.1.6-py2.py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,308 Found link https://files.pythonhosted.org/packages/50/41/3a6971253ad46bb8ba4fc484b5c5ea980932a318bc54e58690c1bd30d513/deTELpy-0.1.6.tar.gz (from https://pypi.org/simple/detelpy/), version: 0.1.6 2024-03-15T13:51:50,308 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/91/b9/360b31802cd03b5ad0038272aab957f589b15f9303d73e86474d3c7de3cb/deTELpy-0.1.7-py2.py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,309 Found link https://files.pythonhosted.org/packages/d9/4f/2d958b2add4c7a3462560e446377d6ea083c2d44473a6087353a68ae4ac8/deTELpy-0.1.7.tar.gz (from https://pypi.org/simple/detelpy/), version: 0.1.7 2024-03-15T13:51:50,310 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/cd/14/b658611e53e5670ebb7dd44d48877a90956f1d4cbb085a8ddb78acfee2ef/deTELpy-0.1.8-py2.py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,310 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/9f/f6/2066320a2f3bb827a4f0a6b0a0983cb9767929990169b56421cf81fc591a/deTELpy-0.1.10-py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,311 Found link https://files.pythonhosted.org/packages/da/15/b001bf1bfa816d98945ee7b1e44f5784a66133665c960057fb2d8e7c312e/deTELpy-0.1.10.tar.gz (from https://pypi.org/simple/detelpy/), version: 0.1.10 2024-03-15T13:51:50,312 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/aa/db/70cd92ab19021d6c3337a42c9ee73da19ee7b692a643b2af0b1132a1518a/deTELpy-0.1.11-py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,312 Found link https://files.pythonhosted.org/packages/95/5d/310b2a0a17802ed8dbae51df91e3d28952daab43ed1ec78e1258783d88b6/deTELpy-0.1.11.tar.gz (from https://pypi.org/simple/detelpy/), version: 0.1.11 2024-03-15T13:51:50,313 Skipping link: No binaries permitted for detelpy: https://files.pythonhosted.org/packages/92/07/047a075f7469822e6c411ec20e08d9443984a2a04126aefe1058dc4b27b8/deTELpy-0.1.12-py3-none-any.whl (from https://pypi.org/simple/detelpy/) 2024-03-15T13:51:50,314 Found link https://files.pythonhosted.org/packages/6c/44/f3171c8aeea091f967e9738a99590163c94d9510358c12c77d2de9a37111/deTELpy-0.1.12.tar.gz (from https://pypi.org/simple/detelpy/), version: 0.1.12 2024-03-15T13:51:50,314 Fetching project page and analyzing links: https://www.piwheels.org/simple/detelpy/ 2024-03-15T13:51:50,316 Getting page https://www.piwheels.org/simple/detelpy/ 2024-03-15T13:51:50,317 Found index url https://www.piwheels.org/simple/ 2024-03-15T13:51:50,619 Fetched page https://www.piwheels.org/simple/detelpy/ as text/html 2024-03-15T13:51:50,624 Skipping link: No binaries permitted for detelpy: https://www.piwheels.org/simple/detelpy/deTELpy-0.1.11-py3-none-any.whl#sha256=f8073ffb49f0fc26e6d0b6c55a206436da5a368bb9ae48e3c5df8da55bd91b91 (from https://www.piwheels.org/simple/detelpy/) 2024-03-15T13:51:50,625 Skipping link: No binaries permitted for detelpy: https://www.piwheels.org/simple/detelpy/deTELpy-0.1.10-py3-none-any.whl#sha256=011c0c0668c8c5b934e30ec4ff6618e209d4f2b3ca5c40aa747327922b9a8242 (from https://www.piwheels.org/simple/detelpy/) 2024-03-15T13:51:50,625 Skipping link: No binaries permitted for detelpy: https://www.piwheels.org/simple/detelpy/deTELpy-0.1.7-py3-none-any.whl#sha256=7d4b0995054f44d3eb3b3197150cac43d87668932f24dd773e10a231172b0e85 (from https://www.piwheels.org/simple/detelpy/) 2024-03-15T13:51:50,626 Skipping link: No binaries permitted for detelpy: https://www.piwheels.org/simple/detelpy/deTELpy-0.1.6-py3-none-any.whl#sha256=d747c0f23830407fc76e8bfae8db47929cb7f8db69533a8ee60dda7a8736a351 (from https://www.piwheels.org/simple/detelpy/) 2024-03-15T13:51:50,627 Skipping link: No binaries permitted for detelpy: https://www.piwheels.org/simple/detelpy/deTELpy-0.1.5-py3-none-any.whl#sha256=9585ac7384c61d0027fb3069e83ee216a12cf86b69b32d4c5a26d0c9ecbd2bfc (from https://www.piwheels.org/simple/detelpy/) 2024-03-15T13:51:50,628 Skipping link: not a file: https://www.piwheels.org/simple/detelpy/ 2024-03-15T13:51:50,629 Skipping link: not a file: https://pypi.org/simple/detelpy/ 2024-03-15T13:51:50,668 Given no hashes to check 1 links for project 'detelpy': discarding no candidates 2024-03-15T13:51:50,704 Collecting detelpy==0.1.12 2024-03-15T13:51:50,707 Created temporary directory: /tmp/pip-unpack-3skdef7w 2024-03-15T13:51:50,924 Downloading deTELpy-0.1.12.tar.gz (68 kB) 2024-03-15T13:51:51,063 Added detelpy==0.1.12 from https://files.pythonhosted.org/packages/6c/44/f3171c8aeea091f967e9738a99590163c94d9510358c12c77d2de9a37111/deTELpy-0.1.12.tar.gz to build tracker '/tmp/pip-build-tracker-an9shbn3' 2024-03-15T13:51:51,065 Running setup.py (path:/tmp/pip-wheel-xlloxgze/detelpy_e028a091da064ae58edf21325c7dad63/setup.py) egg_info for package detelpy 2024-03-15T13:51:51,066 Created temporary directory: /tmp/pip-pip-egg-info-0mcw4koq 2024-03-15T13:51:51,067 Preparing metadata (setup.py): started 2024-03-15T13:51:51,068 Running command python setup.py egg_info 2024-03-15T13:51:52,168 running egg_info 2024-03-15T13:51:52,169 creating /tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info 2024-03-15T13:51:52,194 writing /tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/PKG-INFO 2024-03-15T13:51:52,199 writing dependency_links to /tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/dependency_links.txt 2024-03-15T13:51:52,203 writing requirements to /tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/requires.txt 2024-03-15T13:51:52,205 writing top-level names to /tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/top_level.txt 2024-03-15T13:51:52,208 writing manifest file '/tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/SOURCES.txt' 2024-03-15T13:51:52,297 reading manifest file '/tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/SOURCES.txt' 2024-03-15T13:51:52,299 adding license file 'LICENSE' 2024-03-15T13:51:52,302 writing manifest file '/tmp/pip-pip-egg-info-0mcw4koq/deTELpy.egg-info/SOURCES.txt' 2024-03-15T13:51:52,410 Preparing metadata (setup.py): finished with status 'done' 2024-03-15T13:51:52,416 Source in /tmp/pip-wheel-xlloxgze/detelpy_e028a091da064ae58edf21325c7dad63 has version 0.1.12, which satisfies requirement detelpy==0.1.12 from https://files.pythonhosted.org/packages/6c/44/f3171c8aeea091f967e9738a99590163c94d9510358c12c77d2de9a37111/deTELpy-0.1.12.tar.gz 2024-03-15T13:51:52,417 Removed detelpy==0.1.12 from https://files.pythonhosted.org/packages/6c/44/f3171c8aeea091f967e9738a99590163c94d9510358c12c77d2de9a37111/deTELpy-0.1.12.tar.gz from build tracker '/tmp/pip-build-tracker-an9shbn3' 2024-03-15T13:51:52,424 Created temporary directory: /tmp/pip-unpack-8ujjnadf 2024-03-15T13:51:52,425 Created temporary directory: /tmp/pip-unpack-0rt5qbi7 2024-03-15T13:51:52,451 Building wheels for collected packages: detelpy 2024-03-15T13:51:52,455 Created temporary directory: /tmp/pip-wheel-tul5nbs4 2024-03-15T13:51:52,456 Building wheel for detelpy (setup.py): started 2024-03-15T13:51:52,457 Destination directory: /tmp/pip-wheel-tul5nbs4 2024-03-15T13:51:52,457 Running command python setup.py bdist_wheel 2024-03-15T13:51:53,513 running bdist_wheel 2024-03-15T13:51:53,617 running build 2024-03-15T13:51:53,618 running build_py 2024-03-15T13:51:53,645 creating build 2024-03-15T13:51:53,645 creating build/lib 2024-03-15T13:51:53,646 creating build/lib/deTEL 2024-03-15T13:51:53,648 copying deTEL/__main__.py -> build/lib/deTEL 2024-03-15T13:51:53,650 copying deTEL/__init__.py -> build/lib/deTEL 2024-03-15T13:51:53,652 copying deTEL/exceptions.py -> build/lib/deTEL 2024-03-15T13:51:53,654 copying deTEL/gui.py -> build/lib/deTEL 2024-03-15T13:51:53,656 copying deTEL/utils.py -> build/lib/deTEL 2024-03-15T13:51:53,658 creating build/lib/deTEL/eTEL 2024-03-15T13:51:53,659 copying deTEL/eTEL/__init__.py -> build/lib/deTEL/eTEL 2024-03-15T13:51:53,661 creating build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,662 copying deTEL/eTEL/workflow/eTEL.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,665 copying deTEL/eTEL/workflow/__init__.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,667 copying deTEL/eTEL/workflow/dataset_report.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,669 copying deTEL/eTEL/workflow/substitution_report.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,671 copying deTEL/eTEL/workflow/utils.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,673 copying deTEL/eTEL/workflow/global_report.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,675 copying deTEL/eTEL/workflow/extract_peptides.py -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,677 creating build/lib/deTEL/mTEL 2024-03-15T13:51:53,678 copying deTEL/mTEL/mTEL.py -> build/lib/deTEL/mTEL 2024-03-15T13:51:53,681 copying deTEL/mTEL/__init__.py -> build/lib/deTEL/mTEL 2024-03-15T13:51:53,682 copying deTEL/mTEL/mcmc.py -> build/lib/deTEL/mTEL 2024-03-15T13:51:53,684 copying deTEL/mTEL/mtem.py -> build/lib/deTEL/mTEL 2024-03-15T13:51:53,687 copying deTEL/mTEL/data.py -> build/lib/deTEL/mTEL 2024-03-15T13:51:53,689 creating build/lib/deTEL/rTEL 2024-03-15T13:51:53,690 copying deTEL/rTEL/__init__.py -> build/lib/deTEL/rTEL 2024-03-15T13:51:53,692 copying deTEL/rTEL/open_search.py -> build/lib/deTEL/rTEL 2024-03-15T13:51:53,696 creating build/lib/utility 2024-03-15T13:51:53,696 copying utility/downloadPRIDE.py -> build/lib/utility 2024-03-15T13:51:53,698 copying utility/prideCrawler.py -> build/lib/utility 2024-03-15T13:51:53,700 running egg_info 2024-03-15T13:51:53,755 writing deTELpy.egg-info/PKG-INFO 2024-03-15T13:51:53,759 writing dependency_links to deTELpy.egg-info/dependency_links.txt 2024-03-15T13:51:53,761 writing requirements to deTELpy.egg-info/requires.txt 2024-03-15T13:51:53,763 writing top-level names to deTELpy.egg-info/top_level.txt 2024-03-15T13:51:53,798 reading manifest file 'deTELpy.egg-info/SOURCES.txt' 2024-03-15T13:51:53,801 adding license file 'LICENSE' 2024-03-15T13:51:53,803 writing manifest file 'deTELpy.egg-info/SOURCES.txt' 2024-03-15T13:51:53,805 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'deTEL.eTEL.workflow.templates' is absent from the `packages` configuration. 2024-03-15T13:51:53,806 !! 2024-03-15T13:51:53,808 ******************************************************************************** 2024-03-15T13:51:53,808 ############################ 2024-03-15T13:51:53,809 # Package would be ignored # 2024-03-15T13:51:53,810 ############################ 2024-03-15T13:51:53,811 Python recognizes 'deTEL.eTEL.workflow.templates' as an importable package[^1], 2024-03-15T13:51:53,811 but it is absent from setuptools' `packages` configuration. 2024-03-15T13:51:53,812 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-15T13:51:53,813 package, please make sure that 'deTEL.eTEL.workflow.templates' is explicitly added 2024-03-15T13:51:53,813 to the `packages` configuration field. 2024-03-15T13:51:53,814 Alternatively, you can also rely on setuptools' discovery methods 2024-03-15T13:51:53,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-15T13:51:53,815 instead of `find_packages(...)`/`find:`). 2024-03-15T13:51:53,816 You can read more about "package discovery" on setuptools documentation page: 2024-03-15T13:51:53,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-15T13:51:53,818 If you don't want 'deTEL.eTEL.workflow.templates' to be distributed and are 2024-03-15T13:51:53,818 already explicitly excluding 'deTEL.eTEL.workflow.templates' via 2024-03-15T13:51:53,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-15T13:51:53,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-15T13:51:53,820 combination with a more fine grained `package-data` configuration. 2024-03-15T13:51:53,821 You can read more about "package data files" on setuptools documentation page: 2024-03-15T13:51:53,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-15T13:51:53,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-15T13:51:53,824 even if it does not contain any `.py` files. 2024-03-15T13:51:53,825 On the other hand, currently there is no concept of package data 2024-03-15T13:51:53,826 directory, all directories are treated like packages. 2024-03-15T13:51:53,826 ******************************************************************************** 2024-03-15T13:51:53,828 !! 2024-03-15T13:51:53,829 check.warn(importable) 2024-03-15T13:51:53,830 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'deTEL.tRNA_count' is absent from the `packages` configuration. 2024-03-15T13:51:53,830 !! 2024-03-15T13:51:53,832 ******************************************************************************** 2024-03-15T13:51:53,833 ############################ 2024-03-15T13:51:53,834 # Package would be ignored # 2024-03-15T13:51:53,834 ############################ 2024-03-15T13:51:53,835 Python recognizes 'deTEL.tRNA_count' as an importable package[^1], 2024-03-15T13:51:53,835 but it is absent from setuptools' `packages` configuration. 2024-03-15T13:51:53,837 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-15T13:51:53,837 package, please make sure that 'deTEL.tRNA_count' is explicitly added 2024-03-15T13:51:53,838 to the `packages` configuration field. 2024-03-15T13:51:53,839 Alternatively, you can also rely on setuptools' discovery methods 2024-03-15T13:51:53,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-15T13:51:53,840 instead of `find_packages(...)`/`find:`). 2024-03-15T13:51:53,841 You can read more about "package discovery" on setuptools documentation page: 2024-03-15T13:51:53,842 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-15T13:51:53,843 If you don't want 'deTEL.tRNA_count' to be distributed and are 2024-03-15T13:51:53,844 already explicitly excluding 'deTEL.tRNA_count' via 2024-03-15T13:51:53,844 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-15T13:51:53,844 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-15T13:51:53,845 combination with a more fine grained `package-data` configuration. 2024-03-15T13:51:53,846 You can read more about "package data files" on setuptools documentation page: 2024-03-15T13:51:53,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-15T13:51:53,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-15T13:51:53,848 even if it does not contain any `.py` files. 2024-03-15T13:51:53,849 On the other hand, currently there is no concept of package data 2024-03-15T13:51:53,849 directory, all directories are treated like packages. 2024-03-15T13:51:53,850 ******************************************************************************** 2024-03-15T13:51:53,851 !! 2024-03-15T13:51:53,851 check.warn(importable) 2024-03-15T13:51:53,852 creating build/lib/deTEL/tRNA_count 2024-03-15T13:51:53,852 copying deTEL/tRNA_count/ecoli_tRNA_count.csv -> build/lib/deTEL/tRNA_count 2024-03-15T13:51:53,853 copying deTEL/tRNA_count/yeast_tRNA_count.csv -> build/lib/deTEL/tRNA_count 2024-03-15T13:51:53,853 copying deTEL/eTEL/workflow/danger_mods.csv -> build/lib/deTEL/eTEL/workflow 2024-03-15T13:51:53,854 creating build/lib/deTEL/eTEL/workflow/templates 2024-03-15T13:51:53,854 copying deTEL/eTEL/workflow/templates/substitution_report.html -> build/lib/deTEL/eTEL/workflow/templates 2024-03-15T13:51:53,855 creating build/lib/deTEL/rTEL/configs 2024-03-15T13:51:53,855 copying deTEL/rTEL/configs/crystal-c.params -> build/lib/deTEL/rTEL/configs 2024-03-15T13:51:53,856 copying deTEL/rTEL/configs/open_search.params -> build/lib/deTEL/rTEL/configs 2024-03-15T13:51:53,856 copying deTEL/rTEL/configs/shepherd.config -> build/lib/deTEL/rTEL/configs 2024-03-15T13:51:53,877 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-15T13:51:53,878 !! 2024-03-15T13:51:53,879 ******************************************************************************** 2024-03-15T13:51:53,880 Please avoid running ``setup.py`` directly. 2024-03-15T13:51:53,880 Instead, use pypa/build, pypa/installer or other 2024-03-15T13:51:53,881 standards-based tools. 2024-03-15T13:51:53,882 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-15T13:51:53,883 ******************************************************************************** 2024-03-15T13:51:53,884 !! 2024-03-15T13:51:53,885 self.initialize_options() 2024-03-15T13:51:53,905 installing to build/bdist.linux-armv7l/wheel 2024-03-15T13:51:53,906 running install 2024-03-15T13:51:53,930 running install_lib 2024-03-15T13:51:53,955 creating build/bdist.linux-armv7l 2024-03-15T13:51:53,956 creating build/bdist.linux-armv7l/wheel 2024-03-15T13:51:53,958 creating build/bdist.linux-armv7l/wheel/utility 2024-03-15T13:51:53,959 copying build/lib/utility/downloadPRIDE.py -> build/bdist.linux-armv7l/wheel/utility 2024-03-15T13:51:53,961 copying build/lib/utility/prideCrawler.py -> build/bdist.linux-armv7l/wheel/utility 2024-03-15T13:51:53,963 creating build/bdist.linux-armv7l/wheel/deTEL 2024-03-15T13:51:53,964 copying build/lib/deTEL/__main__.py -> build/bdist.linux-armv7l/wheel/deTEL 2024-03-15T13:51:53,966 copying build/lib/deTEL/__init__.py -> build/bdist.linux-armv7l/wheel/deTEL 2024-03-15T13:51:53,969 creating build/bdist.linux-armv7l/wheel/deTEL/eTEL 2024-03-15T13:51:53,970 copying build/lib/deTEL/eTEL/__init__.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL 2024-03-15T13:51:53,973 creating build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,973 copying build/lib/deTEL/eTEL/workflow/eTEL.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,976 copying build/lib/deTEL/eTEL/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,978 copying build/lib/deTEL/eTEL/workflow/dataset_report.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,980 copying build/lib/deTEL/eTEL/workflow/substitution_report.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,982 copying build/lib/deTEL/eTEL/workflow/utils.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,984 copying build/lib/deTEL/eTEL/workflow/global_report.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,987 creating build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow/templates 2024-03-15T13:51:53,988 copying build/lib/deTEL/eTEL/workflow/templates/substitution_report.html -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow/templates 2024-03-15T13:51:53,991 copying build/lib/deTEL/eTEL/workflow/extract_peptides.py -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,992 copying build/lib/deTEL/eTEL/workflow/danger_mods.csv -> build/bdist.linux-armv7l/wheel/deTEL/eTEL/workflow 2024-03-15T13:51:53,995 copying build/lib/deTEL/exceptions.py -> build/bdist.linux-armv7l/wheel/deTEL 2024-03-15T13:51:53,997 copying build/lib/deTEL/gui.py -> build/bdist.linux-armv7l/wheel/deTEL 2024-03-15T13:51:54,000 creating build/bdist.linux-armv7l/wheel/deTEL/rTEL 2024-03-15T13:51:54,000 copying build/lib/deTEL/rTEL/__init__.py -> build/bdist.linux-armv7l/wheel/deTEL/rTEL 2024-03-15T13:51:54,003 creating build/bdist.linux-armv7l/wheel/deTEL/rTEL/configs 2024-03-15T13:51:54,004 copying build/lib/deTEL/rTEL/configs/shepherd.config -> build/bdist.linux-armv7l/wheel/deTEL/rTEL/configs 2024-03-15T13:51:54,006 copying build/lib/deTEL/rTEL/configs/open_search.params -> build/bdist.linux-armv7l/wheel/deTEL/rTEL/configs 2024-03-15T13:51:54,010 copying build/lib/deTEL/rTEL/configs/crystal-c.params -> build/bdist.linux-armv7l/wheel/deTEL/rTEL/configs 2024-03-15T13:51:54,013 copying build/lib/deTEL/rTEL/open_search.py -> build/bdist.linux-armv7l/wheel/deTEL/rTEL 2024-03-15T13:51:54,016 creating build/bdist.linux-armv7l/wheel/deTEL/tRNA_count 2024-03-15T13:51:54,017 copying build/lib/deTEL/tRNA_count/ecoli_tRNA_count.csv -> build/bdist.linux-armv7l/wheel/deTEL/tRNA_count 2024-03-15T13:51:54,019 copying build/lib/deTEL/tRNA_count/yeast_tRNA_count.csv -> build/bdist.linux-armv7l/wheel/deTEL/tRNA_count 2024-03-15T13:51:54,022 creating build/bdist.linux-armv7l/wheel/deTEL/mTEL 2024-03-15T13:51:54,023 copying build/lib/deTEL/mTEL/mTEL.py -> build/bdist.linux-armv7l/wheel/deTEL/mTEL 2024-03-15T13:51:54,026 copying build/lib/deTEL/mTEL/__init__.py -> build/bdist.linux-armv7l/wheel/deTEL/mTEL 2024-03-15T13:51:54,028 copying build/lib/deTEL/mTEL/mcmc.py -> build/bdist.linux-armv7l/wheel/deTEL/mTEL 2024-03-15T13:51:54,031 copying build/lib/deTEL/mTEL/mtem.py -> build/bdist.linux-armv7l/wheel/deTEL/mTEL 2024-03-15T13:51:54,034 copying build/lib/deTEL/mTEL/data.py -> build/bdist.linux-armv7l/wheel/deTEL/mTEL 2024-03-15T13:51:54,036 copying build/lib/deTEL/utils.py -> build/bdist.linux-armv7l/wheel/deTEL 2024-03-15T13:51:54,038 running install_egg_info 2024-03-15T13:51:54,069 Copying deTELpy.egg-info to build/bdist.linux-armv7l/wheel/deTELpy-0.1.12-py3.11.egg-info 2024-03-15T13:51:54,079 running install_scripts 2024-03-15T13:51:54,103 creating build/bdist.linux-armv7l/wheel/deTELpy-0.1.12.dist-info/WHEEL 2024-03-15T13:51:54,106 creating '/tmp/pip-wheel-tul5nbs4/deTELpy-0.1.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-15T13:51:54,108 adding 'deTEL/__init__.py' 2024-03-15T13:51:54,110 adding 'deTEL/__main__.py' 2024-03-15T13:51:54,111 adding 'deTEL/exceptions.py' 2024-03-15T13:51:54,112 adding 'deTEL/gui.py' 2024-03-15T13:51:54,114 adding 'deTEL/utils.py' 2024-03-15T13:51:54,115 adding 'deTEL/eTEL/__init__.py' 2024-03-15T13:51:54,117 adding 'deTEL/eTEL/workflow/__init__.py' 2024-03-15T13:51:54,119 adding 'deTEL/eTEL/workflow/danger_mods.csv' 2024-03-15T13:51:54,121 adding 'deTEL/eTEL/workflow/dataset_report.py' 2024-03-15T13:51:54,124 adding 'deTEL/eTEL/workflow/eTEL.py' 2024-03-15T13:51:54,125 adding 'deTEL/eTEL/workflow/extract_peptides.py' 2024-03-15T13:51:54,128 adding 'deTEL/eTEL/workflow/global_report.py' 2024-03-15T13:51:54,129 adding 'deTEL/eTEL/workflow/substitution_report.py' 2024-03-15T13:51:54,131 adding 'deTEL/eTEL/workflow/utils.py' 2024-03-15T13:51:54,133 adding 'deTEL/eTEL/workflow/templates/substitution_report.html' 2024-03-15T13:51:54,135 adding 'deTEL/mTEL/__init__.py' 2024-03-15T13:51:54,136 adding 'deTEL/mTEL/data.py' 2024-03-15T13:51:54,138 adding 'deTEL/mTEL/mTEL.py' 2024-03-15T13:51:54,140 adding 'deTEL/mTEL/mcmc.py' 2024-03-15T13:51:54,142 adding 'deTEL/mTEL/mtem.py' 2024-03-15T13:51:54,144 adding 'deTEL/rTEL/__init__.py' 2024-03-15T13:51:54,149 adding 'deTEL/rTEL/open_search.py' 2024-03-15T13:51:54,150 adding 'deTEL/rTEL/configs/crystal-c.params' 2024-03-15T13:51:54,152 adding 'deTEL/rTEL/configs/open_search.params' 2024-03-15T13:51:54,153 adding 'deTEL/rTEL/configs/shepherd.config' 2024-03-15T13:51:54,155 adding 'deTEL/tRNA_count/ecoli_tRNA_count.csv' 2024-03-15T13:51:54,156 adding 'deTEL/tRNA_count/yeast_tRNA_count.csv' 2024-03-15T13:51:54,159 adding 'utility/downloadPRIDE.py' 2024-03-15T13:51:54,160 adding 'utility/prideCrawler.py' 2024-03-15T13:51:54,161 adding 'deTELpy-0.1.12.dist-info/LICENSE' 2024-03-15T13:51:54,164 adding 'deTELpy-0.1.12.dist-info/METADATA' 2024-03-15T13:51:54,165 adding 'deTELpy-0.1.12.dist-info/WHEEL' 2024-03-15T13:51:54,166 adding 'deTELpy-0.1.12.dist-info/top_level.txt' 2024-03-15T13:51:54,167 adding 'deTELpy-0.1.12.dist-info/RECORD' 2024-03-15T13:51:54,170 removing build/bdist.linux-armv7l/wheel 2024-03-15T13:51:54,293 Building wheel for detelpy (setup.py): finished with status 'done' 2024-03-15T13:51:54,296 Created wheel for detelpy: filename=deTELpy-0.1.12-py3-none-any.whl size=68248 sha256=45f4107e6a1844b56df4c4ba05b5e8fd9271162ead649c4b19272e183635ad4b 2024-03-15T13:51:54,297 Stored in directory: /tmp/pip-ephem-wheel-cache-t3ij177t/wheels/13/a5/f0/d9ef17d89f41ff4b23bfb73f8d9f977a36e32cfab8ed981cca 2024-03-15T13:51:54,312 Successfully built detelpy 2024-03-15T13:51:54,318 Removed build tracker: '/tmp/pip-build-tracker-an9shbn3'