2024-03-15T21:15:44,227 Created temporary directory: /tmp/pip-build-tracker-o3z236uw 2024-03-15T21:15:44,228 Initialized build tracking at /tmp/pip-build-tracker-o3z236uw 2024-03-15T21:15:44,229 Created build tracker: /tmp/pip-build-tracker-o3z236uw 2024-03-15T21:15:44,229 Entered build tracker: /tmp/pip-build-tracker-o3z236uw 2024-03-15T21:15:44,230 Created temporary directory: /tmp/pip-wheel-78o65wn0 2024-03-15T21:15:44,233 Created temporary directory: /tmp/pip-ephem-wheel-cache-a0u3aijt 2024-03-15T21:15:44,255 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-15T21:15:44,259 2 location(s) to search for versions of pub-worm: 2024-03-15T21:15:44,259 * https://pypi.org/simple/pub-worm/ 2024-03-15T21:15:44,259 * https://www.piwheels.org/simple/pub-worm/ 2024-03-15T21:15:44,260 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/ 2024-03-15T21:15:44,260 Getting page https://pypi.org/simple/pub-worm/ 2024-03-15T21:15:44,262 Found index url https://pypi.org/simple/ 2024-03-15T21:15:44,479 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json 2024-03-15T21:15:44,483 Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1 2024-03-15T21:15:44,483 Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1 2024-03-15T21:15:44,484 Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2 2024-03-15T21:15:44,485 Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3 2024-03-15T21:15:44,485 Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4 2024-03-15T21:15:44,486 Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5 2024-03-15T21:15:44,487 Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6 2024-03-15T21:15:44,487 Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7 2024-03-15T21:15:44,488 Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8 2024-03-15T21:15:44,489 Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9 2024-03-15T21:15:44,490 Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0 2024-03-15T21:15:44,490 Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1 2024-03-15T21:15:44,491 Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2 2024-03-15T21:15:44,492 Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3 2024-03-15T21:15:44,492 Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4 2024-03-15T21:15:44,493 Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5 2024-03-15T21:15:44,494 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/ 2024-03-15T21:15:44,495 Getting page https://www.piwheels.org/simple/pub-worm/ 2024-03-15T21:15:44,496 Found index url https://www.piwheels.org/simple/ 2024-03-15T21:15:44,895 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html 2024-03-15T21:15:44,900 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,900 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,901 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,901 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,902 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,902 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,903 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,904 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,904 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,905 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,905 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,906 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,907 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,908 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,908 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/) 2024-03-15T21:15:44,909 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/ 2024-03-15T21:15:44,909 Skipping link: not a file: https://pypi.org/simple/pub-worm/ 2024-03-15T21:15:44,929 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates 2024-03-15T21:15:44,947 Collecting pub-worm==0.2.5 2024-03-15T21:15:44,949 Created temporary directory: /tmp/pip-unpack-7zynx1tv 2024-03-15T21:15:45,168 Downloading pub_worm-0.2.5.tar.gz (387 kB) 2024-03-15T21:15:45,349 Added pub-worm==0.2.5 from https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz to build tracker '/tmp/pip-build-tracker-o3z236uw' 2024-03-15T21:15:45,351 Running setup.py (path:/tmp/pip-wheel-78o65wn0/pub-worm_77ac26ef19a54b75a96bc58f5ebf10b1/setup.py) egg_info for package pub-worm 2024-03-15T21:15:45,352 Created temporary directory: /tmp/pip-pip-egg-info-znb2mkyt 2024-03-15T21:15:45,353 Preparing metadata (setup.py): started 2024-03-15T21:15:45,355 Running command python setup.py egg_info 2024-03-15T21:15:46,391 running egg_info 2024-03-15T21:15:46,392 creating /tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info 2024-03-15T21:15:46,417 writing /tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/PKG-INFO 2024-03-15T21:15:46,420 writing dependency_links to /tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/dependency_links.txt 2024-03-15T21:15:46,422 writing requirements to /tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/requires.txt 2024-03-15T21:15:46,423 writing top-level names to /tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/top_level.txt 2024-03-15T21:15:46,424 writing manifest file '/tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/SOURCES.txt' 2024-03-15T21:15:46,504 reading manifest file '/tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/SOURCES.txt' 2024-03-15T21:15:46,505 reading manifest template 'MANIFEST.in' 2024-03-15T21:15:46,509 writing manifest file '/tmp/pip-pip-egg-info-znb2mkyt/pub_worm.egg-info/SOURCES.txt' 2024-03-15T21:15:46,616 Preparing metadata (setup.py): finished with status 'done' 2024-03-15T21:15:46,620 Source in /tmp/pip-wheel-78o65wn0/pub-worm_77ac26ef19a54b75a96bc58f5ebf10b1 has version 0.2.5, which satisfies requirement pub-worm==0.2.5 from https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz 2024-03-15T21:15:46,621 Removed pub-worm==0.2.5 from https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz from build tracker '/tmp/pip-build-tracker-o3z236uw' 2024-03-15T21:15:46,625 Created temporary directory: /tmp/pip-unpack-87xemk54 2024-03-15T21:15:46,626 Created temporary directory: /tmp/pip-unpack-3fsvuuc7 2024-03-15T21:15:46,630 Building wheels for collected packages: pub-worm 2024-03-15T21:15:46,633 Created temporary directory: /tmp/pip-wheel-3fs4xq25 2024-03-15T21:15:46,634 Building wheel for pub-worm (setup.py): started 2024-03-15T21:15:46,635 Destination directory: /tmp/pip-wheel-3fs4xq25 2024-03-15T21:15:46,636 Running command python setup.py bdist_wheel 2024-03-15T21:15:47,647 running bdist_wheel 2024-03-15T21:15:47,741 running build 2024-03-15T21:15:47,741 running build_py 2024-03-15T21:15:47,768 creating build 2024-03-15T21:15:47,768 creating build/lib 2024-03-15T21:15:47,769 creating build/lib/pub_worm 2024-03-15T21:15:47,770 copying pub_worm/__init__.py -> build/lib/pub_worm 2024-03-15T21:15:47,772 creating build/lib/pub_worm/ncbi 2024-03-15T21:15:47,773 copying pub_worm/ncbi/entreze_post.py -> build/lib/pub_worm/ncbi 2024-03-15T21:15:47,775 copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi 2024-03-15T21:15:47,777 copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi 2024-03-15T21:15:47,779 creating build/lib/pub_worm/impact_factor 2024-03-15T21:15:47,780 copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor 2024-03-15T21:15:47,781 copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor 2024-03-15T21:15:47,783 creating build/lib/pub_worm/wormbase 2024-03-15T21:15:47,784 copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase 2024-03-15T21:15:47,786 copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase 2024-03-15T21:15:47,788 copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase 2024-03-15T21:15:47,790 running egg_info 2024-03-15T21:15:47,844 writing pub_worm.egg-info/PKG-INFO 2024-03-15T21:15:47,847 writing dependency_links to pub_worm.egg-info/dependency_links.txt 2024-03-15T21:15:47,849 writing requirements to pub_worm.egg-info/requires.txt 2024-03-15T21:15:47,850 writing top-level names to pub_worm.egg-info/top_level.txt 2024-03-15T21:15:47,878 reading manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-15T21:15:47,881 reading manifest template 'MANIFEST.in' 2024-03-15T21:15:47,884 writing manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-03-15T21:15:47,886 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration. 2024-03-15T21:15:47,887 !! 2024-03-15T21:15:47,888 ******************************************************************************** 2024-03-15T21:15:47,888 ############################ 2024-03-15T21:15:47,889 # Package would be ignored # 2024-03-15T21:15:47,890 ############################ 2024-03-15T21:15:47,890 Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1], 2024-03-15T21:15:47,891 but it is absent from setuptools' `packages` configuration. 2024-03-15T21:15:47,891 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-15T21:15:47,892 package, please make sure that 'pub_worm.impact_factor.data' is explicitly added 2024-03-15T21:15:47,892 to the `packages` configuration field. 2024-03-15T21:15:47,893 Alternatively, you can also rely on setuptools' discovery methods 2024-03-15T21:15:47,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-15T21:15:47,894 instead of `find_packages(...)`/`find:`). 2024-03-15T21:15:47,895 You can read more about "package discovery" on setuptools documentation page: 2024-03-15T21:15:47,896 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-15T21:15:47,897 If you don't want 'pub_worm.impact_factor.data' to be distributed and are 2024-03-15T21:15:47,898 already explicitly excluding 'pub_worm.impact_factor.data' via 2024-03-15T21:15:47,898 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-15T21:15:47,899 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-15T21:15:47,900 combination with a more fine grained `package-data` configuration. 2024-03-15T21:15:47,901 You can read more about "package data files" on setuptools documentation page: 2024-03-15T21:15:47,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-15T21:15:47,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-15T21:15:47,904 even if it does not contain any `.py` files. 2024-03-15T21:15:47,905 On the other hand, currently there is no concept of package data 2024-03-15T21:15:47,905 directory, all directories are treated like packages. 2024-03-15T21:15:47,905 ******************************************************************************** 2024-03-15T21:15:47,906 !! 2024-03-15T21:15:47,907 check.warn(importable) 2024-03-15T21:15:47,907 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.ncbi.data' is absent from the `packages` configuration. 2024-03-15T21:15:47,908 !! 2024-03-15T21:15:47,909 ******************************************************************************** 2024-03-15T21:15:47,911 ############################ 2024-03-15T21:15:47,918 # Package would be ignored # 2024-03-15T21:15:47,923 ############################ 2024-03-15T21:15:47,923 Python recognizes 'pub_worm.ncbi.data' as an importable package[^1], 2024-03-15T21:15:47,924 but it is absent from setuptools' `packages` configuration. 2024-03-15T21:15:47,925 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-15T21:15:47,926 package, please make sure that 'pub_worm.ncbi.data' is explicitly added 2024-03-15T21:15:47,926 to the `packages` configuration field. 2024-03-15T21:15:47,927 Alternatively, you can also rely on setuptools' discovery methods 2024-03-15T21:15:47,928 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-15T21:15:47,928 instead of `find_packages(...)`/`find:`). 2024-03-15T21:15:47,929 You can read more about "package discovery" on setuptools documentation page: 2024-03-15T21:15:47,930 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-15T21:15:47,932 If you don't want 'pub_worm.ncbi.data' to be distributed and are 2024-03-15T21:15:47,932 already explicitly excluding 'pub_worm.ncbi.data' via 2024-03-15T21:15:47,933 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-15T21:15:47,933 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-15T21:15:47,934 combination with a more fine grained `package-data` configuration. 2024-03-15T21:15:47,935 You can read more about "package data files" on setuptools documentation page: 2024-03-15T21:15:47,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-15T21:15:47,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-15T21:15:47,938 even if it does not contain any `.py` files. 2024-03-15T21:15:47,939 On the other hand, currently there is no concept of package data 2024-03-15T21:15:47,939 directory, all directories are treated like packages. 2024-03-15T21:15:47,940 ******************************************************************************** 2024-03-15T21:15:47,941 !! 2024-03-15T21:15:47,941 check.warn(importable) 2024-03-15T21:15:47,942 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration. 2024-03-15T21:15:47,943 !! 2024-03-15T21:15:47,944 ******************************************************************************** 2024-03-15T21:15:47,944 ############################ 2024-03-15T21:15:47,945 # Package would be ignored # 2024-03-15T21:15:47,945 ############################ 2024-03-15T21:15:47,946 Python recognizes 'pub_worm.wormbase.data' as an importable package[^1], 2024-03-15T21:15:47,947 but it is absent from setuptools' `packages` configuration. 2024-03-15T21:15:47,948 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-15T21:15:47,948 package, please make sure that 'pub_worm.wormbase.data' is explicitly added 2024-03-15T21:15:47,949 to the `packages` configuration field. 2024-03-15T21:15:47,949 Alternatively, you can also rely on setuptools' discovery methods 2024-03-15T21:15:47,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-15T21:15:47,950 instead of `find_packages(...)`/`find:`). 2024-03-15T21:15:47,951 You can read more about "package discovery" on setuptools documentation page: 2024-03-15T21:15:47,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-15T21:15:47,953 If you don't want 'pub_worm.wormbase.data' to be distributed and are 2024-03-15T21:15:47,954 already explicitly excluding 'pub_worm.wormbase.data' via 2024-03-15T21:15:47,954 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-15T21:15:47,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-15T21:15:47,955 combination with a more fine grained `package-data` configuration. 2024-03-15T21:15:47,956 You can read more about "package data files" on setuptools documentation page: 2024-03-15T21:15:47,957 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-15T21:15:47,959 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-15T21:15:47,959 even if it does not contain any `.py` files. 2024-03-15T21:15:47,960 On the other hand, currently there is no concept of package data 2024-03-15T21:15:47,960 directory, all directories are treated like packages. 2024-03-15T21:15:47,961 ******************************************************************************** 2024-03-15T21:15:47,962 !! 2024-03-15T21:15:47,963 check.warn(importable) 2024-03-15T21:15:47,964 creating build/lib/pub_worm/ncbi/data 2024-03-15T21:15:47,964 copying pub_worm/ncbi/data/ncbi_efetch.json -> build/lib/pub_worm/ncbi/data 2024-03-15T21:15:47,965 copying pub_worm/ncbi/data/ncbi_esearch.json -> build/lib/pub_worm/ncbi/data 2024-03-15T21:15:47,966 copying pub_worm/ncbi/data/ncbi_esummary.json -> build/lib/pub_worm/ncbi/data 2024-03-15T21:15:47,966 creating build/lib/pub_worm/impact_factor/data 2024-03-15T21:15:47,967 copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data 2024-03-15T21:15:47,967 creating build/lib/pub_worm/wormbase/data 2024-03-15T21:15:47,968 copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-15T21:15:47,969 copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data 2024-03-15T21:15:47,969 copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data 2024-03-15T21:15:47,970 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-15T21:15:47,970 !! 2024-03-15T21:15:47,972 ******************************************************************************** 2024-03-15T21:15:47,972 Please avoid running ``setup.py`` directly. 2024-03-15T21:15:47,973 Instead, use pypa/build, pypa/installer or other 2024-03-15T21:15:47,973 standards-based tools. 2024-03-15T21:15:47,974 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-15T21:15:47,975 ******************************************************************************** 2024-03-15T21:15:47,976 !! 2024-03-15T21:15:47,977 self.initialize_options() 2024-03-15T21:15:47,992 installing to build/bdist.linux-armv7l/wheel 2024-03-15T21:15:47,993 running install 2024-03-15T21:15:48,017 running install_lib 2024-03-15T21:15:48,042 creating build/bdist.linux-armv7l 2024-03-15T21:15:48,042 creating build/bdist.linux-armv7l/wheel 2024-03-15T21:15:48,044 creating build/bdist.linux-armv7l/wheel/pub_worm 2024-03-15T21:15:48,045 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-15T21:15:48,047 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-15T21:15:48,048 copying build/lib/pub_worm/ncbi/data/ncbi_esearch.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-15T21:15:48,050 copying build/lib/pub_worm/ncbi/data/ncbi_efetch.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-15T21:15:48,052 copying build/lib/pub_worm/ncbi/data/ncbi_esummary.json -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi/data 2024-03-15T21:15:48,053 copying build/lib/pub_worm/ncbi/entreze_post.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-15T21:15:48,055 copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-15T21:15:48,058 copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-03-15T21:15:48,060 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-15T21:15:48,061 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-15T21:15:48,062 copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-03-15T21:15:48,091 copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-15T21:15:48,093 copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-03-15T21:15:48,095 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-15T21:15:48,096 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-15T21:15:48,097 copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-15T21:15:48,099 copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-15T21:15:48,101 copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-03-15T21:15:48,103 copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-15T21:15:48,104 copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-15T21:15:48,106 copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-03-15T21:15:48,108 copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/pub_worm 2024-03-15T21:15:48,110 running install_egg_info 2024-03-15T21:15:48,140 Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/pub_worm-0.2.5-py3.11.egg-info 2024-03-15T21:15:48,152 running install_scripts 2024-03-15T21:15:48,163 creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.5.dist-info/WHEEL 2024-03-15T21:15:48,166 creating '/tmp/pip-wheel-3fs4xq25/pub_worm-0.2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-15T21:15:48,168 adding 'pub_worm/__init__.py' 2024-03-15T21:15:48,169 adding 'pub_worm/impact_factor/__init__.py' 2024-03-15T21:15:48,171 adding 'pub_worm/impact_factor/impact_factor_lookup.py' 2024-03-15T21:15:48,336 adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv' 2024-03-15T21:15:48,346 adding 'pub_worm/ncbi/__init__.py' 2024-03-15T21:15:48,348 adding 'pub_worm/ncbi/entreze_api.py' 2024-03-15T21:15:48,350 adding 'pub_worm/ncbi/entreze_post.py' 2024-03-15T21:15:48,352 adding 'pub_worm/ncbi/data/ncbi_efetch.json' 2024-03-15T21:15:48,353 adding 'pub_worm/ncbi/data/ncbi_esearch.json' 2024-03-15T21:15:48,354 adding 'pub_worm/ncbi/data/ncbi_esummary.json' 2024-03-15T21:15:48,356 adding 'pub_worm/wormbase/__init__.py' 2024-03-15T21:15:48,357 adding 'pub_worm/wormbase/to_csv_helpers.py' 2024-03-15T21:15:48,358 adding 'pub_worm/wormbase/wormbase_api.py' 2024-03-15T21:15:48,360 adding 'pub_worm/wormbase/data/wormbase_field_gene.json' 2024-03-15T21:15:48,361 adding 'pub_worm/wormbase/data/wormbase_field_paper.json' 2024-03-15T21:15:48,362 adding 'pub_worm/wormbase/data/wormbase_widget_gene.json' 2024-03-15T21:15:48,364 adding 'pub_worm-0.2.5.dist-info/METADATA' 2024-03-15T21:15:48,365 adding 'pub_worm-0.2.5.dist-info/WHEEL' 2024-03-15T21:15:48,366 adding 'pub_worm-0.2.5.dist-info/top_level.txt' 2024-03-15T21:15:48,367 adding 'pub_worm-0.2.5.dist-info/RECORD' 2024-03-15T21:15:48,372 removing build/bdist.linux-armv7l/wheel 2024-03-15T21:15:48,490 Building wheel for pub-worm (setup.py): finished with status 'done' 2024-03-15T21:15:48,496 Created wheel for pub-worm: filename=pub_worm-0.2.5-py3-none-any.whl size=391875 sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e 2024-03-15T21:15:48,498 Stored in directory: /tmp/pip-ephem-wheel-cache-a0u3aijt/wheels/bb/de/ba/4a45664834b5c6a2a1649e3cd61be6032a4111c5c413e774bc 2024-03-15T21:15:48,507 Successfully built pub-worm 2024-03-15T21:15:48,523 Removed build tracker: '/tmp/pip-build-tracker-o3z236uw'