2024-03-19T06:09:32,464 Created temporary directory: /tmp/pip-build-tracker-gob8r53e
2024-03-19T06:09:32,465 Initialized build tracking at /tmp/pip-build-tracker-gob8r53e
2024-03-19T06:09:32,465 Created build tracker: /tmp/pip-build-tracker-gob8r53e
2024-03-19T06:09:32,466 Entered build tracker: /tmp/pip-build-tracker-gob8r53e
2024-03-19T06:09:32,466 Created temporary directory: /tmp/pip-wheel-uviy3er1
2024-03-19T06:09:32,471 Created temporary directory: /tmp/pip-ephem-wheel-cache-w6b38q6l
2024-03-19T06:09:32,494 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-19T06:09:32,498 2 location(s) to search for versions of uta-align:
2024-03-19T06:09:32,498 * https://pypi.org/simple/uta-align/
2024-03-19T06:09:32,498 * https://www.piwheels.org/simple/uta-align/
2024-03-19T06:09:32,498 Fetching project page and analyzing links: https://pypi.org/simple/uta-align/
2024-03-19T06:09:32,499 Getting page https://pypi.org/simple/uta-align/
2024-03-19T06:09:32,500 Found index url https://pypi.org/simple/
2024-03-19T06:09:32,776 Fetched page https://pypi.org/simple/uta-align/ as application/vnd.pypi.simple.v1+json
2024-03-19T06:09:32,782   Found link https://files.pythonhosted.org/packages/60/a2/47df4fbbbf9800199f0b9363ba2b02c7f234d074ad2693d09cb499a18b2f/uta-align-0.0.1dev-c749ca8b22a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.0.1dev-c749ca8b22a0
2024-03-19T06:09:32,782   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/08/ed/16116fd416d69101c3cda7290be8a3a4f82f9d3c9e7902c783633ed78f21/uta_align-0.0.1dev_c749ca8b22a0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,782   Found link https://files.pythonhosted.org/packages/c5/c4/e4c65f29cdbcec6ec0269ae305bba6b2a228ff67699de315154dcda99f68/uta-align-0.1.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.0
2024-03-19T06:09:32,783   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/50/0cf3cc125b6ba7ad99012bedf436c15e56cdf19c677edd4d25f24c51cfe2/uta_align-0.1.0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,783   Found link https://files.pythonhosted.org/packages/f5/7f/c7c7d3043fa52fe7d6c8d3a870409f9cc9126ca11c113ca05bcd889a123d/uta-align-0.1.2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.2
2024-03-19T06:09:32,783   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/fe/38/a811e7ea2cfa3d1447302b1e0bf650a6b7394c85a308416ae9acbde5c0b9/uta_align-0.1.2-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,783   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/ef/d709856489d8883fa96dfa2732a7cdf33a2b6eb7319e2d8f245e1fbe299a/uta_align-0.1.4-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,784   Found link https://files.pythonhosted.org/packages/4f/98/6c282d715088d99d0e4ad4574bd7ae06ae0157f9b4c94843bf215a2b13fd/uta-align-0.1.5.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.5
2024-03-19T06:09:32,784   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d3/86/7a17a92e6730db93d570dde8d4f6ed2ebde235a4a2b1067fe41aa73e6d56/uta_align-0.1.5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,784   Found link https://files.pythonhosted.org/packages/20/a0/944d267127f1cc2b188f8afbc3684232ebd576ccad97cec399179f29ada3/uta-align-0.1.6.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.6
2024-03-19T06:09:32,784   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/79/ab5ccbbf4854c8dc038871306dccb76e18680581267e876528f829089b6a/uta_align-0.1.6-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,785   Found link https://files.pythonhosted.org/packages/42/c0/9999b551deffc63c27066cffdac0c2bdd6413d3741b775a6f0441ce82c94/uta-align-0.1.7.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.7
2024-03-19T06:09:32,785   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/fc/a620e23d04f03f60881831b48f4e05e3fbd8b8cd9c797b06245f7783d8b4/uta_align-0.1.7-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,785   Found link https://files.pythonhosted.org/packages/f1/f2/ae2c44e1009a4c94be0a228a17ba41327cbb14ca4d205b9d30a6d03907e0/uta-align-0.1.8.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.8
2024-03-19T06:09:32,785   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0a/e1/dfb0593828e024c1a8c1b40539a892d613a52221deec59e1916e6271c49d/uta_align-0.1.8-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,785   Found link https://files.pythonhosted.org/packages/53/9a/f8e1cab0dc5e7f59277cad128fcead3897c03c74c743b6ef05927a49914e/uta-align-0.1.9.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.9
2024-03-19T06:09:32,786   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/12/b6/bedbe1aa646f76d72de5a2e269b0771d04704ab97be399ebe34a7b4a31ac/uta_align-0.1.9-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,786   Found link https://files.pythonhosted.org/packages/94/6b/0b73dc6d3391468e9d5229a262129763672296d41f1a26d4f128c66a99dd/uta-align-0.1.10.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.10
2024-03-19T06:09:32,786   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/ec/2ec104fea2c5ad78e85b77df92d92a77c75fca18b9fd5efe75e970c4d6ed/uta_align-0.1.10-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,786   Found link https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.11
2024-03-19T06:09:32,787   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/dd/a7/46496d2d48416e55e45b4f7a77103d53a80f9165552d81ffba27e51ff99b/uta_align-0.1.11-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,787   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0f/7c/ffe50738dd367f7378193f892584392015f4b62aa3ebce7ff721b0cddbc4/uta_align-0.1.11-py3.6-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2024-03-19T06:09:32,787   Found link https://files.pythonhosted.org/packages/0f/a2/e6bdd37d746c294c7a6374664078ecf2d34677b52c5267ff0576f669eb15/uta-align-0.2.0a1.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a1
2024-03-19T06:09:32,787   Found link https://files.pythonhosted.org/packages/7c/07/3d0483101728198e619f9d45552d2d50dc90fc2937964a899e6fe3908687/uta-align-0.2.0a2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a2
2024-03-19T06:09:32,788   Found link https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a3
2024-03-19T06:09:32,788   Found link https://files.pythonhosted.org/packages/64/bc/5306c731e7d4d304e9d1f7fee2a8fa1d79640626ccaac9f9df660078893c/uta-align-0.2.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0
2024-03-19T06:09:32,788   Found link https://files.pythonhosted.org/packages/95/c5/883aa80e54870d4646838c083bfc48f892f0b17999c6ae59f3dd364efa90/uta-align-0.3.0a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.3.0a0
2024-03-19T06:09:32,789   Found link https://files.pythonhosted.org/packages/4c/eb/12819f9693b0577aca06c70648619a0a5b10bffa368c64c226471cdb1bd8/uta-align-0.3.0a4.tar.gz (from https://pypi.org/simple/uta-align/) (requires-python:>=3.9), version: 0.3.0a4
2024-03-19T06:09:32,789   Found link https://files.pythonhosted.org/packages/f6/03/56ded4004b41fb7710600127a8f67c647a5295a70abdf40f9a09d605a55d/uta-align-0.3.0a5.tar.gz (from https://pypi.org/simple/uta-align/) (requires-python:>=3.9), version: 0.3.0a5
2024-03-19T06:09:32,790 Fetching project page and analyzing links: https://www.piwheels.org/simple/uta-align/
2024-03-19T06:09:32,790 Getting page https://www.piwheels.org/simple/uta-align/
2024-03-19T06:09:32,791 Found index url https://www.piwheels.org/simple/
2024-03-19T06:09:32,947 Fetched page https://www.piwheels.org/simple/uta-align/ as text/html
2024-03-19T06:09:32,958   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a5-cp311-cp311-linux_armv6l.whl#sha256=309ace9d1efadd04a97f2bb603a7b92e01e45befbe26d88ec69c1d2edc6de0d2 (from https://www.piwheels.org/simple/uta-align/) (requires-python:>=3.9)
2024-03-19T06:09:32,959   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a5-cp311-cp311-linux_armv7l.whl#sha256=309ace9d1efadd04a97f2bb603a7b92e01e45befbe26d88ec69c1d2edc6de0d2 (from https://www.piwheels.org/simple/uta-align/) (requires-python:>=3.9)
2024-03-19T06:09:32,959   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a4-cp311-cp311-linux_armv6l.whl#sha256=55c053bcb3639f53ac55f28761fc6676766b52e9db33a83d9fdf891e0513cfc3 (from https://www.piwheels.org/simple/uta-align/) (requires-python:>=3.9)
2024-03-19T06:09:32,959   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a4-cp311-cp311-linux_armv7l.whl#sha256=55c053bcb3639f53ac55f28761fc6676766b52e9db33a83d9fdf891e0513cfc3 (from https://www.piwheels.org/simple/uta-align/) (requires-python:>=3.9)
2024-03-19T06:09:32,959   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a4-cp39-cp39-linux_armv6l.whl#sha256=95623d57a62ac3ac725c26ba4d646ec86a4b9a592e65808c17a830112d27a179 (from https://www.piwheels.org/simple/uta-align/) (requires-python:>=3.9)
2024-03-19T06:09:32,959   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a4-cp39-cp39-linux_armv7l.whl#sha256=95623d57a62ac3ac725c26ba4d646ec86a4b9a592e65808c17a830112d27a179 (from https://www.piwheels.org/simple/uta-align/) (requires-python:>=3.9)
2024-03-19T06:09:32,960   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp311-cp311-linux_armv6l.whl#sha256=fc65db985e03837e737b03c0a36b910e0cec18b21b731f3a33e84a74149707db (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,960   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp311-cp311-linux_armv7l.whl#sha256=fc65db985e03837e737b03c0a36b910e0cec18b21b731f3a33e84a74149707db (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,960   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp37-cp37m-linux_armv6l.whl#sha256=364a1ba4e603e17e767fccc392bfb7aef78095000a7b7ab28227147010441d34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,960   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp37-cp37m-linux_armv7l.whl#sha256=364a1ba4e603e17e767fccc392bfb7aef78095000a7b7ab28227147010441d34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,960   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp39-cp39-linux_armv6l.whl#sha256=ea88b398d93f9315873ae8e5829936a4ea7757178fe88808b4994bd4f0a84082 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,961   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.3.0a0-cp39-cp39-linux_armv7l.whl#sha256=ea88b398d93f9315873ae8e5829936a4ea7757178fe88808b4994bd4f0a84082 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,961   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv6l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,961   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv7l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,961   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,961   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,962   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,962   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,962   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv6l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,962   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv7l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,962   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv6l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,963   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv7l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,963   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv6l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,963   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv7l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,963   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv7l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,963   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv6l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,964   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv6l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,964   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv7l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,964   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv6l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,964   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv7l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,964   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,964   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,965   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,965   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,965   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,965   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,965   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv6l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,966   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv7l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2024-03-19T06:09:32,966 Skipping link: not a file: https://www.piwheels.org/simple/uta-align/
2024-03-19T06:09:32,966 Skipping link: not a file: https://pypi.org/simple/uta-align/
2024-03-19T06:09:32,985 Given no hashes to check 1 links for project 'uta-align': discarding no candidates
2024-03-19T06:09:33,000 Collecting uta-align==0.3.0a5
2024-03-19T06:09:33,002   Created temporary directory: /tmp/pip-unpack-itdf9acj
2024-03-19T06:09:33,047   Downloading uta-align-0.3.0a5.tar.gz (340 kB)
2024-03-19T06:09:33,288   Added uta-align==0.3.0a5 from https://files.pythonhosted.org/packages/f6/03/56ded4004b41fb7710600127a8f67c647a5295a70abdf40f9a09d605a55d/uta-align-0.3.0a5.tar.gz to build tracker '/tmp/pip-build-tracker-gob8r53e'
2024-03-19T06:09:33,299   Created temporary directory: /tmp/pip-build-env-x70u3s7v
2024-03-19T06:09:33,309   Installing build dependencies: started
2024-03-19T06:09:33,310   Running command pip subprocess to install build dependencies
2024-03-19T06:09:34,466   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-03-19T06:09:34,995   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-19T06:09:35,509   Collecting wheel
2024-03-19T06:09:35,539     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-03-19T06:09:36,915   Collecting Cython~=3.0
2024-03-19T06:09:36,954     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-03-19T06:09:37,550   Collecting pysam~=0.22
2024-03-19T06:09:37,566     Downloading https://www.piwheels.org/simple/pysam/pysam-0.22.0-cp39-cp39-linux_armv7l.whl (17.5 MB)
2024-03-19T06:09:46,260        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.5/17.5 MB 2.4 MB/s eta 0:00:00
2024-03-19T06:09:47,945   Collecting setuptools~=69.0
2024-03-19T06:09:47,997     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB)
2024-03-19T06:09:48,352   Collecting setuptools_scm~=8.0
2024-03-19T06:09:48,378     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
2024-03-19T06:09:48,786   Collecting packaging>=20 (from setuptools_scm~=8.0)
2024-03-19T06:09:48,817     Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB)
2024-03-19T06:09:48,952   Collecting typing-extensions (from setuptools_scm~=8.0)
2024-03-19T06:09:48,972     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.10.0-py3-none-any.whl (33 kB)
2024-03-19T06:09:49,082   Collecting tomli>=1 (from setuptools_scm~=8.0)
2024-03-19T06:09:49,098     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-03-19T06:09:50,786   Installing collected packages: wheel, typing-extensions, tomli, setuptools, pysam, packaging, Cython, setuptools_scm
2024-03-19T06:09:51,001     Creating /tmp/pip-build-env-x70u3s7v/overlay/bin
2024-03-19T06:09:51,003     changing mode of /tmp/pip-build-env-x70u3s7v/overlay/bin/wheel to 755
2024-03-19T06:09:59,507     changing mode of /tmp/pip-build-env-x70u3s7v/overlay/bin/cygdb to 755
2024-03-19T06:09:59,509     changing mode of /tmp/pip-build-env-x70u3s7v/overlay/bin/cython to 755
2024-03-19T06:09:59,511     changing mode of /tmp/pip-build-env-x70u3s7v/overlay/bin/cythonize to 755
2024-03-19T06:09:59,720   Successfully installed Cython-3.0.9 packaging-24.0 pysam-0.22.0 setuptools-69.2.0 setuptools_scm-8.0.4 tomli-2.0.1 typing-extensions-4.10.0 wheel-0.43.0
2024-03-19T06:10:00,324   Installing build dependencies: finished with status 'done'
2024-03-19T06:10:00,328   Getting requirements to build wheel: started
2024-03-19T06:10:00,329   Running command Getting requirements to build wheel
2024-03-19T06:10:09,080   Compiling uta_align/align/algorithms.pyx because it depends on /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd.
2024-03-19T06:10:09,081   Compiling uta_align/align/cigar_utils.pyx because it depends on /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/Cython/Includes/posix/types.pxd.
2024-03-19T06:10:09,081   [1/2] Cythonizing uta_align/align/algorithms.pyx
2024-03-19T06:10:09,081   [2/2] Cythonizing uta_align/align/cigar_utils.pyx
2024-03-19T06:10:09,704   running egg_info
2024-03-19T06:10:09,711   writing uta_align.egg-info/PKG-INFO
2024-03-19T06:10:09,722   writing dependency_links to uta_align.egg-info/dependency_links.txt
2024-03-19T06:10:09,728   writing requirements to uta_align.egg-info/requires.txt
2024-03-19T06:10:09,729   writing top-level names to uta_align.egg-info/top_level.txt
2024-03-19T06:10:09,794   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,794   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,795   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,796   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,797   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,797   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,797   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,797   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,797   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,797   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,798   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:09,841   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-03-19T06:10:09,943   reading manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:09,949   adding license file 'LICENSE.txt'
2024-03-19T06:10:09,952   writing manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:10,340   Getting requirements to build wheel: finished with status 'done'
2024-03-19T06:10:10,350   Created temporary directory: /tmp/pip-modern-metadata-dpyfkcah
2024-03-19T06:10:10,353   Preparing metadata (pyproject.toml): started
2024-03-19T06:10:10,354   Running command Preparing metadata (pyproject.toml)
2024-03-19T06:10:12,793   running dist_info
2024-03-19T06:10:12,801   creating /tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info
2024-03-19T06:10:12,808   writing /tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/PKG-INFO
2024-03-19T06:10:12,819   writing dependency_links to /tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/dependency_links.txt
2024-03-19T06:10:12,825   writing requirements to /tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/requires.txt
2024-03-19T06:10:12,826   writing top-level names to /tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/top_level.txt
2024-03-19T06:10:12,827   writing manifest file '/tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:12,849   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,849   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,850   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,850   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,850   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,850   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,850   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,850   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,851   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,852   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,853   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:12,885   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-03-19T06:10:12,897   reading manifest file '/tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:12,900   adding license file 'LICENSE.txt'
2024-03-19T06:10:12,903   writing manifest file '/tmp/pip-modern-metadata-dpyfkcah/uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:12,904   creating '/tmp/pip-modern-metadata-dpyfkcah/uta_align-0.3.0a5.dist-info'
2024-03-19T06:10:13,108   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-19T06:10:13,116   Source in /tmp/pip-wheel-uviy3er1/uta-align_8d198872143d4a70aceadd686bc3ee5a has version 0.3.0a5, which satisfies requirement uta-align==0.3.0a5 from https://files.pythonhosted.org/packages/f6/03/56ded4004b41fb7710600127a8f67c647a5295a70abdf40f9a09d605a55d/uta-align-0.3.0a5.tar.gz
2024-03-19T06:10:13,117   Removed uta-align==0.3.0a5 from https://files.pythonhosted.org/packages/f6/03/56ded4004b41fb7710600127a8f67c647a5295a70abdf40f9a09d605a55d/uta-align-0.3.0a5.tar.gz from build tracker '/tmp/pip-build-tracker-gob8r53e'
2024-03-19T06:10:13,125 Created temporary directory: /tmp/pip-unpack-u1rhrjr4
2024-03-19T06:10:13,126 Created temporary directory: /tmp/pip-unpack-f7xu12tx
2024-03-19T06:10:13,180 Building wheels for collected packages: uta-align
2024-03-19T06:10:13,184   Created temporary directory: /tmp/pip-wheel-uy76i7w7
2024-03-19T06:10:13,185   Destination directory: /tmp/pip-wheel-uy76i7w7
2024-03-19T06:10:13,187   Building wheel for uta-align (pyproject.toml): started
2024-03-19T06:10:13,188   Running command Building wheel for uta-align (pyproject.toml)
2024-03-19T06:10:15,561   running bdist_wheel
2024-03-19T06:10:15,590   running build
2024-03-19T06:10:15,590   running build_py
2024-03-19T06:10:15,598   creating build
2024-03-19T06:10:15,598   creating build/lib.linux-armv7l-cpython-39
2024-03-19T06:10:15,599   creating build/lib.linux-armv7l-cpython-39/uta_align
2024-03-19T06:10:15,600   copying uta_align/__init__.py -> build/lib.linux-armv7l-cpython-39/uta_align
2024-03-19T06:10:15,601   running egg_info
2024-03-19T06:10:15,608   writing uta_align.egg-info/PKG-INFO
2024-03-19T06:10:15,618   writing dependency_links to uta_align.egg-info/dependency_links.txt
2024-03-19T06:10:15,624   writing requirements to uta_align.egg-info/requires.txt
2024-03-19T06:10:15,625   writing top-level names to uta_align.egg-info/top_level.txt
2024-03-19T06:10:15,630   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,630   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,630   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,630   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,631   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/htslib_util.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/bgzf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/cram.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/faidx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hfile.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,632   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/hts.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,633   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kstring.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,633   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/sam.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,633   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/tbx.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,633   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcf.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,633   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/vcfutils.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,633   dependency /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h won't be automatically included in the manifest: the path must be relative
2024-03-19T06:10:15,666   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2024-03-19T06:10:15,678   reading manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:15,681   adding license file 'LICENSE.txt'
2024-03-19T06:10:15,685   writing manifest file 'uta_align.egg-info/SOURCES.txt'
2024-03-19T06:10:15,688   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'uta_align.align' is absent from the `packages` configuration.
2024-03-19T06:10:15,688   !!

2024-03-19T06:10:15,688           ********************************************************************************
2024-03-19T06:10:15,689           ############################
2024-03-19T06:10:15,689           # Package would be ignored #
2024-03-19T06:10:15,689           ############################
2024-03-19T06:10:15,689           Python recognizes 'uta_align.align' as an importable package[^1],
2024-03-19T06:10:15,689           but it is absent from setuptools' `packages` configuration.

2024-03-19T06:10:15,689           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-19T06:10:15,690           package, please make sure that 'uta_align.align' is explicitly added
2024-03-19T06:10:15,690           to the `packages` configuration field.

2024-03-19T06:10:15,690           Alternatively, you can also rely on setuptools' discovery methods
2024-03-19T06:10:15,690           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-19T06:10:15,690           instead of `find_packages(...)`/`find:`).

2024-03-19T06:10:15,691           You can read more about "package discovery" on setuptools documentation page:

2024-03-19T06:10:15,691           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-19T06:10:15,691           If you don't want 'uta_align.align' to be distributed and are
2024-03-19T06:10:15,692           already explicitly excluding 'uta_align.align' via
2024-03-19T06:10:15,692           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-19T06:10:15,692           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-19T06:10:15,692           combination with a more fine grained `package-data` configuration.

2024-03-19T06:10:15,692           You can read more about "package data files" on setuptools documentation page:

2024-03-19T06:10:15,693           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-19T06:10:15,693           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-19T06:10:15,693                 even if it does not contain any `.py` files.
2024-03-19T06:10:15,693                 On the other hand, currently there is no concept of package data
2024-03-19T06:10:15,694                 directory, all directories are treated like packages.
2024-03-19T06:10:15,694           ********************************************************************************

2024-03-19T06:10:15,694   !!
2024-03-19T06:10:15,694     check.warn(importable)
2024-03-19T06:10:15,694   creating build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,694   copying uta_align/align/__init__.py -> build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,695   copying uta_align/align/algorithms.c -> build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,712   copying uta_align/align/algorithms.pyx -> build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,715   copying uta_align/align/cigar_utils.c -> build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,733   copying uta_align/align/cigar_utils.pxd -> build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,735   copying uta_align/align/cigar_utils.pyx -> build/lib.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,738   running build_ext
2024-03-19T06:10:15,746   building 'uta_align.align.algorithms' extension
2024-03-19T06:10:15,747   creating build/temp.linux-armv7l-cpython-39
2024-03-19T06:10:15,747   creating build/temp.linux-armv7l-cpython-39/uta_align
2024-03-19T06:10:15,748   creating build/temp.linux-armv7l-cpython-39/uta_align/align
2024-03-19T06:10:15,749   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c uta_align/align/algorithms.c -o build/temp.linux-armv7l-cpython-39/uta_align/align/algorithms.o
2024-03-19T06:10:16,351   uta_align/align/algorithms.c: In function ‘__pyx_pf_9uta_align_5align_10algorithms_8needleman_wunsch_altshul_erikson’:
2024-03-19T06:10:16,359   uta_align/align/algorithms.c:15298:33: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-19T06:10:16,359   15298 |   for (__pyx_t_5 = 1; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-03-19T06:10:16,359         |                                 ^
2024-03-19T06:10:16,367   uta_align/align/algorithms.c:15335:28: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-19T06:10:16,368   15335 |     __pyx_t_6 = (__pyx_v_j < __pyx_v_m);
2024-03-19T06:10:16,368         |                            ^
2024-03-19T06:10:16,376   uta_align/align/algorithms.c:15367:33: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-19T06:10:16,376   15367 |   for (__pyx_t_5 = 1; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-03-19T06:10:16,376         |                                 ^
2024-03-19T06:10:16,384   uta_align/align/algorithms.c:15450:28: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-19T06:10:16,384   15450 |     __pyx_t_6 = (__pyx_v_i < __pyx_v_n);
2024-03-19T06:10:16,384         |                            ^
2024-03-19T06:10:16,392   uta_align/align/algorithms.c:15481:35: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-19T06:10:16,393   15481 |     for (__pyx_t_7 = 1; __pyx_t_7 < __pyx_t_9; __pyx_t_7+=1) {
2024-03-19T06:10:16,393         |                                   ^
2024-03-19T06:10:17,286   In file included from /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4,
2024-03-19T06:10:17,286                    from uta_align/align/algorithms.c:1269:
2024-03-19T06:10:17,286   At top level:
2024-03-19T06:10:17,287   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:190:12: warning: ‘kseq_read’ defined but not used [-Wunused-function]
2024-03-19T06:10:17,288     190 |  SCOPE int kseq_read(kseq_t *seq) \
2024-03-19T06:10:17,288         |            ^~~~~~~~~
2024-03-19T06:10:17,288   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:244:2: note: in expansion of macro ‘__KSEQ_READ’
2024-03-19T06:10:17,288     244 |  __KSEQ_READ(SCOPE)
2024-03-19T06:10:17,288         |  ^~~~~~~~~~~
2024-03-19T06:10:17,288   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-19T06:10:17,288     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-19T06:10:17,289         |                                   ^~~~~~~~~~
2024-03-19T06:10:17,289   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-19T06:10:17,289       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-19T06:10:17,289         | ^~~~~~~~~
2024-03-19T06:10:17,289   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:174:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
2024-03-19T06:10:17,289     174 |  SCOPE void kseq_destroy(kseq_t *ks)         \
2024-03-19T06:10:17,289         |             ^~~~~~~~~~~~
2024-03-19T06:10:17,290   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’
2024-03-19T06:10:17,290     243 |  __KSEQ_BASIC(SCOPE, type_t)     \
2024-03-19T06:10:17,290         |  ^~~~~~~~~~~~
2024-03-19T06:10:17,290   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-19T06:10:17,290     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-19T06:10:17,290         |                                   ^~~~~~~~~~
2024-03-19T06:10:17,290   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-19T06:10:17,290       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-19T06:10:17,290         | ^~~~~~~~~
2024-03-19T06:10:17,291   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:168:16: warning: ‘kseq_init’ defined but not used [-Wunused-function]
2024-03-19T06:10:17,291     168 |  SCOPE kseq_t *kseq_init(type_t fd)         \
2024-03-19T06:10:17,291         |                ^~~~~~~~~
2024-03-19T06:10:17,291   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’
2024-03-19T06:10:17,291     243 |  __KSEQ_BASIC(SCOPE, type_t)     \
2024-03-19T06:10:17,291         |  ^~~~~~~~~~~~
2024-03-19T06:10:17,292   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-19T06:10:17,292     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-19T06:10:17,292         |                                   ^~~~~~~~~~
2024-03-19T06:10:17,292   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-19T06:10:17,292       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-19T06:10:17,292         | ^~~~~~~~~
2024-03-19T06:10:36,699   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/uta_align/align/algorithms.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/uta_align/align/algorithms.cpython-39-arm-linux-gnueabihf.so
2024-03-19T06:10:36,850   building 'uta_align.align.cigar_utils' extension
2024-03-19T06:10:36,851   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam -I/tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib -I/tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/samtools -I/usr/include/python3.9 -c uta_align/align/cigar_utils.c -o build/temp.linux-armv7l-cpython-39/uta_align/align/cigar_utils.o
2024-03-19T06:10:37,308   In file included from /usr/include/python3.9/Python.h:120,
2024-03-19T06:10:37,308                    from uta_align/align/cigar_utils.c:47:
2024-03-19T06:10:37,308   uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence__extend_from_cigar_slice’:
2024-03-19T06:10:37,310   uta_align/align/cigar_utils.c:8817:37: warning: passing argument 1 of ‘PySlice_Unpack’ from incompatible pointer type [-Wincompatible-pointer-types]
2024-03-19T06:10:37,311    8817 |   __pyx_t_1 = PySlice_GetIndicesEx(((PySliceObject *)__pyx_v_sliceobj), __pyx_v_other->cigar_len, (&__pyx_v_start), (&__pyx_v_stop), (&__pyx_v_step), (&__pyx_v_slicelen)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 222, __pyx_L1_error)
2024-03-19T06:10:37,311   /usr/include/python3.9/sliceobject.h:51:21: note: in definition of macro ‘PySlice_GetIndicesEx’
2024-03-19T06:10:37,311      51 |     PySlice_Unpack((slice), (start), (stop), (step)) < 0 ?                  \
2024-03-19T06:10:37,311         |                     ^~~~~
2024-03-19T06:10:37,311   /usr/include/python3.9/sliceobject.h:55:42: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘PySliceObject *’
2024-03-19T06:10:37,311      55 | PyAPI_FUNC(int) PySlice_Unpack(PyObject *slice,
2024-03-19T06:10:37,312         |                                ~~~~~~~~~~^~~~~
2024-03-19T06:10:37,320   uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence__alloc_buf’:
2024-03-19T06:10:37,324   uta_align/align/cigar_utils.c:9756:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-19T06:10:37,325    9756 |   __pyx_t_1 = (__pyx_v_self->cigar_buf_len < __pyx_v_n);
2024-03-19T06:10:37,325         |                                            ^
2024-03-19T06:10:37,327   uta_align/align/cigar_utils.c: In function ‘__pyx_pf_9uta_align_5align_11cigar_utils_13CigarSequence_6__contains__’:
2024-03-19T06:10:37,332   uta_align/align/cigar_utils.c:10223:62: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-19T06:10:37,332   10223 |     __pyx_t_6 = (((__pyx_v_self->cigar_buf[__pyx_v_i]) & 15) == __pyx_v_op);
2024-03-19T06:10:37,332         |                                                              ^~
2024-03-19T06:10:37,337   uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence_count’:
2024-03-19T06:10:37,341   uta_align/align/cigar_utils.c:10395:62: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-19T06:10:37,342   10395 |     __pyx_t_9 = (((__pyx_v_self->cigar_buf[__pyx_v_i]) & 15) == __pyx_v_op);
2024-03-19T06:10:37,342         |                                                              ^~
2024-03-19T06:10:37,359   uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence_ref_len’:
2024-03-19T06:10:37,364   uta_align/align/cigar_utils.c:11117:48: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-19T06:10:37,364   11117 |       __pyx_t_9 = ((__pyx_v_query + __pyx_v_n) >= __pyx_v_query_bases);
2024-03-19T06:10:37,364         |                                                ^~
2024-03-19T06:10:37,372   uta_align/align/cigar_utils.c: In function ‘__pyx_f_9uta_align_5align_11cigar_utils_13CigarSequence_query_len’:
2024-03-19T06:10:37,378   uta_align/align/cigar_utils.c:11610:47: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-19T06:10:37,378   11610 |       __pyx_t_10 = ((__pyx_v_ref + __pyx_v_n) >= __pyx_v_ref_bases);
2024-03-19T06:10:37,378         |                                               ^~
2024-03-19T06:10:37,463   uta_align/align/cigar_utils.c: In function ‘__pyx_pf_9uta_align_5align_11cigar_utils_13CigarSequence_38to_string’:
2024-03-19T06:10:37,471   uta_align/align/cigar_utils.c:14778:33: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-19T06:10:37,471   14778 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-19T06:10:37,471         |                                 ^
2024-03-19T06:10:37,479   uta_align/align/cigar_utils.c:14827:33: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-19T06:10:37,479   14827 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-19T06:10:37,479         |                                 ^
2024-03-19T06:10:38,431   In file included from /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:4,
2024-03-19T06:10:38,432                    from uta_align/align/cigar_utils.c:1268:
2024-03-19T06:10:38,432   At top level:
2024-03-19T06:10:38,432   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:190:12: warning: ‘kseq_read’ defined but not used [-Wunused-function]
2024-03-19T06:10:38,432     190 |  SCOPE int kseq_read(kseq_t *seq) \
2024-03-19T06:10:38,432         |            ^~~~~~~~~
2024-03-19T06:10:38,433   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:244:2: note: in expansion of macro ‘__KSEQ_READ’
2024-03-19T06:10:38,433     244 |  __KSEQ_READ(SCOPE)
2024-03-19T06:10:38,433         |  ^~~~~~~~~~~
2024-03-19T06:10:38,433   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-19T06:10:38,433     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-19T06:10:38,433         |                                   ^~~~~~~~~~
2024-03-19T06:10:38,434   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-19T06:10:38,434       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-19T06:10:38,434         | ^~~~~~~~~
2024-03-19T06:10:38,434   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:174:13: warning: ‘kseq_destroy’ defined but not used [-Wunused-function]
2024-03-19T06:10:38,434     174 |  SCOPE void kseq_destroy(kseq_t *ks)         \
2024-03-19T06:10:38,434         |             ^~~~~~~~~~~~
2024-03-19T06:10:38,435   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’
2024-03-19T06:10:38,435     243 |  __KSEQ_BASIC(SCOPE, type_t)     \
2024-03-19T06:10:38,435         |  ^~~~~~~~~~~~
2024-03-19T06:10:38,435   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-19T06:10:38,435     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-19T06:10:38,435         |                                   ^~~~~~~~~~
2024-03-19T06:10:38,435   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-19T06:10:38,435       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-19T06:10:38,436         | ^~~~~~~~~
2024-03-19T06:10:38,436   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:168:16: warning: ‘kseq_init’ defined but not used [-Wunused-function]
2024-03-19T06:10:38,436     168 |  SCOPE kseq_t *kseq_init(type_t fd)         \
2024-03-19T06:10:38,436         |                ^~~~~~~~~
2024-03-19T06:10:38,436   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:243:2: note: in expansion of macro ‘__KSEQ_BASIC’
2024-03-19T06:10:38,436     243 |  __KSEQ_BASIC(SCOPE, type_t)     \
2024-03-19T06:10:38,436         |  ^~~~~~~~~~~~
2024-03-19T06:10:38,436   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/include/htslib/htslib/kseq.h:246:35: note: in expansion of macro ‘KSEQ_INIT2’
2024-03-19T06:10:38,437     246 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
2024-03-19T06:10:38,437         |                                   ^~~~~~~~~~
2024-03-19T06:10:38,437   /tmp/pip-build-env-x70u3s7v/overlay/lib/python3.9/site-packages/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’
2024-03-19T06:10:38,437       9 | KSEQ_INIT(BGZF *, bgzf_read)
2024-03-19T06:10:38,437         | ^~~~~~~~~
2024-03-19T06:10:57,828   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/uta_align/align/cigar_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/uta_align/align/cigar_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-19T06:10:57,990   installing to build/bdist.linux-armv7l/wheel
2024-03-19T06:10:57,990   running install
2024-03-19T06:10:58,017   running install_lib
2024-03-19T06:10:58,024   creating build/bdist.linux-armv7l
2024-03-19T06:10:58,024   creating build/bdist.linux-armv7l/wheel
2024-03-19T06:10:58,026   creating build/bdist.linux-armv7l/wheel/uta_align
2024-03-19T06:10:58,027   creating build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,028   copying build/lib.linux-armv7l-cpython-39/uta_align/align/cigar_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,051   copying build/lib.linux-armv7l-cpython-39/uta_align/align/algorithms.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,074   copying build/lib.linux-armv7l-cpython-39/uta_align/align/cigar_utils.pxd -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,076   copying build/lib.linux-armv7l-cpython-39/uta_align/align/cigar_utils.pyx -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,078   copying build/lib.linux-armv7l-cpython-39/uta_align/align/cigar_utils.c -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,096   copying build/lib.linux-armv7l-cpython-39/uta_align/align/algorithms.c -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,113   copying build/lib.linux-armv7l-cpython-39/uta_align/align/algorithms.pyx -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,117   copying build/lib.linux-armv7l-cpython-39/uta_align/align/__init__.py -> build/bdist.linux-armv7l/wheel/uta_align/align
2024-03-19T06:10:58,118   copying build/lib.linux-armv7l-cpython-39/uta_align/__init__.py -> build/bdist.linux-armv7l/wheel/uta_align
2024-03-19T06:10:58,120   running install_egg_info
2024-03-19T06:10:58,126   Copying uta_align.egg-info to build/bdist.linux-armv7l/wheel/uta_align-0.3.0a5-py3.9.egg-info
2024-03-19T06:10:58,142   running install_scripts
2024-03-19T06:10:58,195   creating build/bdist.linux-armv7l/wheel/uta_align-0.3.0a5.dist-info/WHEEL
2024-03-19T06:10:58,198   creating '/tmp/pip-wheel-uy76i7w7/.tmp-8x81zw6k/uta_align-0.3.0a5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-19T06:10:58,200   adding 'uta_align/__init__.py'
2024-03-19T06:10:58,202   adding 'uta_align/align/__init__.py'
2024-03-19T06:10:58,279   adding 'uta_align/align/algorithms.c'
2024-03-19T06:10:58,462   adding 'uta_align/align/algorithms.cpython-39-arm-linux-gnueabihf.so'
2024-03-19T06:10:58,472   adding 'uta_align/align/algorithms.pyx'
2024-03-19T06:10:58,548   adding 'uta_align/align/cigar_utils.c'
2024-03-19T06:10:58,735   adding 'uta_align/align/cigar_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-19T06:10:58,742   adding 'uta_align/align/cigar_utils.pxd'
2024-03-19T06:10:58,745   adding 'uta_align/align/cigar_utils.pyx'
2024-03-19T06:10:58,748   adding 'uta_align-0.3.0a5.dist-info/LICENSE.txt'
2024-03-19T06:10:58,751   adding 'uta_align-0.3.0a5.dist-info/METADATA'
2024-03-19T06:10:58,752   adding 'uta_align-0.3.0a5.dist-info/WHEEL'
2024-03-19T06:10:58,753   adding 'uta_align-0.3.0a5.dist-info/top_level.txt'
2024-03-19T06:10:58,754   adding 'uta_align-0.3.0a5.dist-info/RECORD'
2024-03-19T06:10:58,773   removing build/bdist.linux-armv7l/wheel
2024-03-19T06:10:58,942   Building wheel for uta-align (pyproject.toml): finished with status 'done'
2024-03-19T06:10:58,967   Created wheel for uta-align: filename=uta_align-0.3.0a5-cp39-cp39-linux_armv7l.whl size=952728 sha256=da2fba02612890e0e4ec7145b6d882ba415fb27df6379a136fb4b9a1e6dbdebf
2024-03-19T06:10:58,968   Stored in directory: /tmp/pip-ephem-wheel-cache-w6b38q6l/wheels/f7/52/90/328d8b25964adb4a5a02bf930930da845fa5381b7359991d5e
2024-03-19T06:10:58,986 Successfully built uta-align
2024-03-19T06:10:59,010 Removed build tracker: '/tmp/pip-build-tracker-gob8r53e'