2024-03-19T12:45:33,880 Created temporary directory: /tmp/pip-build-tracker-byo3zngc 2024-03-19T12:45:33,881 Initialized build tracking at /tmp/pip-build-tracker-byo3zngc 2024-03-19T12:45:33,881 Created build tracker: /tmp/pip-build-tracker-byo3zngc 2024-03-19T12:45:33,882 Entered build tracker: /tmp/pip-build-tracker-byo3zngc 2024-03-19T12:45:33,882 Created temporary directory: /tmp/pip-wheel-g62n2qx7 2024-03-19T12:45:33,886 Created temporary directory: /tmp/pip-ephem-wheel-cache-9z_oj14i 2024-03-19T12:45:33,909 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-19T12:45:33,912 2 location(s) to search for versions of brainglobe-atlasapi: 2024-03-19T12:45:33,912 * https://pypi.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:33,912 * https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:33,913 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:33,914 Getting page https://pypi.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:33,915 Found index url https://pypi.org/simple/ 2024-03-19T12:45:34,126 Fetched page https://pypi.org/simple/brainglobe-atlasapi/ as application/vnd.pypi.simple.v1+json 2024-03-19T12:45:34,129 Found link https://files.pythonhosted.org/packages/94/5d/aa9e95d6061393eb9f2184e2a9fdab7d9d404ffb9e8a92555689bc696017/brainglobe-atlasapi-2.0.0.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.0 2024-03-19T12:45:34,130 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/02/2d/b41a734b9d08e1e08e4090d1f3d69d880c8e11d96cf857a620264943cbb5/brainglobe_atlasapi-2.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,131 Found link https://files.pythonhosted.org/packages/22/6c/8007408026e0a98e0d9e7f5b2679ccacfe18c270480a09e75ff95f395ffe/brainglobe-atlasapi-2.0.1.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.1 2024-03-19T12:45:34,132 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/a6/d9/ea6b4b2e2d81d2c4d7512eb4f89d3185eb3f72acb208a81e232f00247ec1/brainglobe_atlasapi-2.0.1-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,133 Found link https://files.pythonhosted.org/packages/67/e4/e1268e42432b3be14f570730be1a3350333b8a85027c4156c4fee6057d77/brainglobe-atlasapi-2.0.2.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.2 2024-03-19T12:45:34,133 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/26/81/ff6f1ca65117f8e7ea4e840f90b77c0fbce04615f5bc52711c86ddb49ab0/brainglobe_atlasapi-2.0.2-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,134 Found link https://files.pythonhosted.org/packages/c4/0b/6907f5c2329bdadd7208a883c633c5c5da48beae9439aac0a8bc6f7aa967/brainglobe-atlasapi-2.0.3.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.3 2024-03-19T12:45:34,135 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/81/e7/b6504f081c4481580326c1eff097f5fcdda3cbcb3e467a52ed2a433f209b/brainglobe_atlasapi-2.0.3-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,136 Found link https://files.pythonhosted.org/packages/a1/05/63f30291d10561bdde617345d08a93cf222894873f3437868992c1e7e98e/brainglobe-atlasapi-2.0.4.tar.gz (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9), version: 2.0.4 2024-03-19T12:45:34,137 Skipping link: No binaries permitted for brainglobe-atlasapi: https://files.pythonhosted.org/packages/fc/16/86c8589b4f72708382411a9b5074572bf568b835ac9af963515cf0661b49/brainglobe_atlasapi-2.0.4-py3-none-any.whl (from https://pypi.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:34,139 Getting page https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:34,140 Found index url https://www.piwheels.org/simple/ 2024-03-19T12:45:34,591 Fetched page https://www.piwheels.org/simple/brainglobe-atlasapi/ as text/html 2024-03-19T12:45:34,594 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.3-py3-none-any.whl#sha256=e09156e510d9f50b8ef4f233d9e1ff849730bc7e7c6637e6d213e3f234a524b6 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,595 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.2-py3-none-any.whl#sha256=d213d9e3582e85a7b61afbe4b42dd9d1d557b2b006fe549a46a00777a51ca3db (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,596 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.1-py3-none-any.whl#sha256=d73a30d618071567cc1cc17cc2a5c914b373403d252e2556b2c4c8460481ca92 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,596 Skipping link: No binaries permitted for brainglobe-atlasapi: https://www.piwheels.org/simple/brainglobe-atlasapi/brainglobe_atlasapi-2.0.0-py3-none-any.whl#sha256=08327d0766a86cc7dc8836cbced68c179e2f26baad4ae391d4440a8dd377a0f1 (from https://www.piwheels.org/simple/brainglobe-atlasapi/) (requires-python:>=3.9) 2024-03-19T12:45:34,597 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:34,598 Skipping link: not a file: https://pypi.org/simple/brainglobe-atlasapi/ 2024-03-19T12:45:34,625 Given no hashes to check 1 links for project 'brainglobe-atlasapi': discarding no candidates 2024-03-19T12:45:34,652 Collecting brainglobe-atlasapi==2.0.4 2024-03-19T12:45:34,655 Created temporary directory: /tmp/pip-unpack-bjznw_vp 2024-03-19T12:45:34,871 Downloading brainglobe-atlasapi-2.0.4.tar.gz (57 kB) 2024-03-19T12:45:35,033 Added brainglobe-atlasapi==2.0.4 from https://files.pythonhosted.org/packages/a1/05/63f30291d10561bdde617345d08a93cf222894873f3437868992c1e7e98e/brainglobe-atlasapi-2.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-byo3zngc' 2024-03-19T12:45:35,041 Created temporary directory: /tmp/pip-build-env-f5l1ermd 2024-03-19T12:45:35,047 Installing build dependencies: started 2024-03-19T12:45:35,048 Running command pip subprocess to install build dependencies 2024-03-19T12:45:36,237 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-19T12:45:37,029 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-19T12:45:38,526 Collecting setuptools>=45 2024-03-19T12:45:38,550 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-19T12:45:40,548 Collecting wheel 2024-03-19T12:45:40,562 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-19T12:45:41,579 Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2) 2024-03-19T12:45:41,637 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-03-19T12:45:42,178 Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-03-19T12:45:42,196 Using cached https://www.piwheels.org/simple/packaging/packaging-24.0-py3-none-any.whl (53 kB) 2024-03-19T12:45:43,138 Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2) 2024-03-19T12:45:43,155 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.10.0-py3-none-any.whl (33 kB) 2024-03-19T12:45:45,747 Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm 2024-03-19T12:45:45,983 Creating /tmp/pip-build-env-f5l1ermd/overlay/local/bin 2024-03-19T12:45:45,986 changing mode of /tmp/pip-build-env-f5l1ermd/overlay/local/bin/wheel to 755 2024-03-19T12:45:49,129 Successfully installed packaging-24.0 setuptools-69.2.0 setuptools_scm-8.0.4 typing-extensions-4.10.0 wheel-0.43.0 2024-03-19T12:45:49,731 Installing build dependencies: finished with status 'done' 2024-03-19T12:45:49,734 Getting requirements to build wheel: started 2024-03-19T12:45:49,735 Running command Getting requirements to build wheel 2024-03-19T12:45:50,690 running egg_info 2024-03-19T12:45:50,696 writing brainglobe_atlasapi.egg-info/PKG-INFO 2024-03-19T12:45:50,704 writing dependency_links to brainglobe_atlasapi.egg-info/dependency_links.txt 2024-03-19T12:45:50,708 writing requirements to brainglobe_atlasapi.egg-info/requires.txt 2024-03-19T12:45:50,709 writing top-level names to brainglobe_atlasapi.egg-info/top_level.txt 2024-03-19T12:45:50,752 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-03-19T12:45:50,757 reading manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:50,759 reading manifest template 'MANIFEST.in' 2024-03-19T12:45:50,761 warning: no files found matching 'requirements.txt' 2024-03-19T12:45:50,762 warning: no previously-included files found matching '.codecov.yml' 2024-03-19T12:45:50,762 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-03-19T12:45:50,763 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-03-19T12:45:50,764 no previously-included directories found matching 'tests' 2024-03-19T12:45:50,765 no previously-included directories found matching 'tutorials' 2024-03-19T12:45:50,765 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-03-19T12:45:50,766 adding license file 'LICENSE' 2024-03-19T12:45:50,769 writing manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:50,895 Getting requirements to build wheel: finished with status 'done' 2024-03-19T12:45:50,907 Created temporary directory: /tmp/pip-modern-metadata-ltwjfzd8 2024-03-19T12:45:50,910 Preparing metadata (pyproject.toml): started 2024-03-19T12:45:50,911 Running command Preparing metadata (pyproject.toml) 2024-03-19T12:45:51,785 running dist_info 2024-03-19T12:45:51,792 creating /tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info 2024-03-19T12:45:51,797 writing /tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/PKG-INFO 2024-03-19T12:45:51,806 writing dependency_links to /tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/dependency_links.txt 2024-03-19T12:45:51,809 writing requirements to /tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/requires.txt 2024-03-19T12:45:51,810 writing top-level names to /tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/top_level.txt 2024-03-19T12:45:51,812 writing manifest file '/tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:51,851 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-03-19T12:45:51,855 reading manifest file '/tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:51,857 reading manifest template 'MANIFEST.in' 2024-03-19T12:45:51,858 warning: no files found matching 'requirements.txt' 2024-03-19T12:45:51,859 warning: no previously-included files found matching '.codecov.yml' 2024-03-19T12:45:51,860 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-03-19T12:45:51,861 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-03-19T12:45:51,862 no previously-included directories found matching 'tests' 2024-03-19T12:45:51,863 no previously-included directories found matching 'tutorials' 2024-03-19T12:45:51,864 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-03-19T12:45:51,866 adding license file 'LICENSE' 2024-03-19T12:45:51,867 writing manifest file '/tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:51,868 creating '/tmp/pip-modern-metadata-ltwjfzd8/brainglobe_atlasapi-2.0.4.dist-info' 2024-03-19T12:45:52,038 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-19T12:45:52,045 Source in /tmp/pip-wheel-g62n2qx7/brainglobe-atlasapi_67a390920dfc4499b881bbbecd498641 has version 2.0.4, which satisfies requirement brainglobe-atlasapi==2.0.4 from https://files.pythonhosted.org/packages/a1/05/63f30291d10561bdde617345d08a93cf222894873f3437868992c1e7e98e/brainglobe-atlasapi-2.0.4.tar.gz 2024-03-19T12:45:52,046 Removed brainglobe-atlasapi==2.0.4 from https://files.pythonhosted.org/packages/a1/05/63f30291d10561bdde617345d08a93cf222894873f3437868992c1e7e98e/brainglobe-atlasapi-2.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-byo3zngc' 2024-03-19T12:45:52,054 Created temporary directory: /tmp/pip-unpack-8i44lz2o 2024-03-19T12:45:52,055 Created temporary directory: /tmp/pip-unpack-1al8wu1b 2024-03-19T12:45:52,107 Building wheels for collected packages: brainglobe-atlasapi 2024-03-19T12:45:52,112 Created temporary directory: /tmp/pip-wheel-4704a4ie 2024-03-19T12:45:52,113 Destination directory: /tmp/pip-wheel-4704a4ie 2024-03-19T12:45:52,115 Building wheel for brainglobe-atlasapi (pyproject.toml): started 2024-03-19T12:45:52,117 Running command Building wheel for brainglobe-atlasapi (pyproject.toml) 2024-03-19T12:45:52,974 running bdist_wheel 2024-03-19T12:45:52,996 running build 2024-03-19T12:45:52,997 running build_py 2024-03-19T12:45:53,003 creating build 2024-03-19T12:45:53,004 creating build/lib 2024-03-19T12:45:53,004 creating build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,006 copying brainglobe_atlasapi/list_atlases.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,008 copying brainglobe_atlasapi/core.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,011 copying brainglobe_atlasapi/__init__.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,013 copying brainglobe_atlasapi/descriptors.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,014 copying brainglobe_atlasapi/config.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,016 copying brainglobe_atlasapi/bg_atlas.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,018 copying brainglobe_atlasapi/update_atlases.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,020 copying brainglobe_atlasapi/structure_class.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,022 copying brainglobe_atlasapi/utils.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,024 copying brainglobe_atlasapi/cli.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,025 copying brainglobe_atlasapi/structure_tree_util.py -> build/lib/brainglobe_atlasapi 2024-03-19T12:45:53,028 creating build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,029 copying brainglobe_atlasapi/atlas_generation/main_script.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,031 copying brainglobe_atlasapi/atlas_generation/__init__.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,033 copying brainglobe_atlasapi/atlas_generation/stacks.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,035 copying brainglobe_atlasapi/atlas_generation/mesh_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,037 copying brainglobe_atlasapi/atlas_generation/validate_atlases.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,040 copying brainglobe_atlasapi/atlas_generation/wrapup.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,042 copying brainglobe_atlasapi/atlas_generation/volume_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,044 copying brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,046 copying brainglobe_atlasapi/atlas_generation/metadata_utils.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,048 copying brainglobe_atlasapi/atlas_generation/structures.py -> build/lib/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,051 creating build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,052 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,053 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,055 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,057 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,059 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,062 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,063 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,066 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,068 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,070 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,072 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,074 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,076 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,079 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,081 copying brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py -> build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,083 running egg_info 2024-03-19T12:45:53,088 writing brainglobe_atlasapi.egg-info/PKG-INFO 2024-03-19T12:45:53,095 writing dependency_links to brainglobe_atlasapi.egg-info/dependency_links.txt 2024-03-19T12:45:53,098 writing requirements to brainglobe_atlasapi.egg-info/requires.txt 2024-03-19T12:45:53,100 writing top-level names to brainglobe_atlasapi.egg-info/top_level.txt 2024-03-19T12:45:53,127 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-03-19T12:45:53,130 reading manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:53,133 reading manifest template 'MANIFEST.in' 2024-03-19T12:45:53,134 warning: no files found matching 'requirements.txt' 2024-03-19T12:45:53,135 warning: no previously-included files found matching '.codecov.yml' 2024-03-19T12:45:53,136 warning: no previously-included files found matching '.pre-commit-config.yaml' 2024-03-19T12:45:53,136 warning: manifest_maker: MANIFEST.in, line 9: 'graft' expects a single 2024-03-19T12:45:53,138 no previously-included directories found matching 'tests' 2024-03-19T12:45:53,138 no previously-included directories found matching 'tutorials' 2024-03-19T12:45:53,139 no previously-included directories found matching 'brainglobe_atlasapi/atlas_generation/atlas_scripts/*' 2024-03-19T12:45:53,139 adding license file 'LICENSE' 2024-03-19T12:45:53,142 writing manifest file 'brainglobe_atlasapi.egg-info/SOURCES.txt' 2024-03-19T12:45:53,157 installing to build/bdist.linux-armv7l/wheel 2024-03-19T12:45:53,157 running install 2024-03-19T12:45:53,181 running install_lib 2024-03-19T12:45:53,186 creating build/bdist.linux-armv7l 2024-03-19T12:45:53,187 creating build/bdist.linux-armv7l/wheel 2024-03-19T12:45:53,188 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,189 copying build/lib/brainglobe_atlasapi/list_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,192 copying build/lib/brainglobe_atlasapi/core.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,194 copying build/lib/brainglobe_atlasapi/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,197 copying build/lib/brainglobe_atlasapi/descriptors.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,198 copying build/lib/brainglobe_atlasapi/config.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,201 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,202 copying build/lib/brainglobe_atlasapi/atlas_generation/main_script.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,205 copying build/lib/brainglobe_atlasapi/atlas_generation/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,207 copying build/lib/brainglobe_atlasapi/atlas_generation/stacks.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,209 copying build/lib/brainglobe_atlasapi/atlas_generation/mesh_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,212 copying build/lib/brainglobe_atlasapi/atlas_generation/validate_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,214 copying build/lib/brainglobe_atlasapi/atlas_generation/wrapup.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,217 copying build/lib/brainglobe_atlasapi/atlas_generation/volume_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,219 copying build/lib/brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,221 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,222 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,224 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,226 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,229 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,231 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,233 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,235 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,238 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,240 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,242 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,245 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,247 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,249 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,253 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,256 copying build/lib/brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation/atlas_scripts 2024-03-19T12:45:53,258 copying build/lib/brainglobe_atlasapi/atlas_generation/metadata_utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,261 copying build/lib/brainglobe_atlasapi/atlas_generation/structures.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi/atlas_generation 2024-03-19T12:45:53,263 copying build/lib/brainglobe_atlasapi/bg_atlas.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,265 copying build/lib/brainglobe_atlasapi/update_atlases.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,268 copying build/lib/brainglobe_atlasapi/structure_class.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,270 copying build/lib/brainglobe_atlasapi/utils.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,273 copying build/lib/brainglobe_atlasapi/cli.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,275 copying build/lib/brainglobe_atlasapi/structure_tree_util.py -> build/bdist.linux-armv7l/wheel/brainglobe_atlasapi 2024-03-19T12:45:53,277 running install_egg_info 2024-03-19T12:45:53,282 Copying brainglobe_atlasapi.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_atlasapi-2.0.4-py3.11.egg-info 2024-03-19T12:45:53,293 running install_scripts 2024-03-19T12:45:53,314 creating build/bdist.linux-armv7l/wheel/brainglobe_atlasapi-2.0.4.dist-info/WHEEL 2024-03-19T12:45:53,316 creating '/tmp/pip-wheel-4704a4ie/.tmp-ux0sutjv/brainglobe_atlasapi-2.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-19T12:45:53,319 adding 'brainglobe_atlasapi/__init__.py' 2024-03-19T12:45:53,321 adding 'brainglobe_atlasapi/bg_atlas.py' 2024-03-19T12:45:53,323 adding 'brainglobe_atlasapi/cli.py' 2024-03-19T12:45:53,324 adding 'brainglobe_atlasapi/config.py' 2024-03-19T12:45:53,327 adding 'brainglobe_atlasapi/core.py' 2024-03-19T12:45:53,328 adding 'brainglobe_atlasapi/descriptors.py' 2024-03-19T12:45:53,330 adding 'brainglobe_atlasapi/list_atlases.py' 2024-03-19T12:45:53,332 adding 'brainglobe_atlasapi/structure_class.py' 2024-03-19T12:45:53,334 adding 'brainglobe_atlasapi/structure_tree_util.py' 2024-03-19T12:45:53,335 adding 'brainglobe_atlasapi/update_atlases.py' 2024-03-19T12:45:53,337 adding 'brainglobe_atlasapi/utils.py' 2024-03-19T12:45:53,340 adding 'brainglobe_atlasapi/atlas_generation/__init__.py' 2024-03-19T12:45:53,341 adding 'brainglobe_atlasapi/atlas_generation/main_script.py' 2024-03-19T12:45:53,343 adding 'brainglobe_atlasapi/atlas_generation/mesh_utils.py' 2024-03-19T12:45:53,345 adding 'brainglobe_atlasapi/atlas_generation/metadata_utils.py' 2024-03-19T12:45:53,347 adding 'brainglobe_atlasapi/atlas_generation/stacks.py' 2024-03-19T12:45:53,348 adding 'brainglobe_atlasapi/atlas_generation/structure_json_to_csv.py' 2024-03-19T12:45:53,350 adding 'brainglobe_atlasapi/atlas_generation/structures.py' 2024-03-19T12:45:53,352 adding 'brainglobe_atlasapi/atlas_generation/validate_atlases.py' 2024-03-19T12:45:53,354 adding 'brainglobe_atlasapi/atlas_generation/volume_utils.py' 2024-03-19T12:45:53,356 adding 'brainglobe_atlasapi/atlas_generation/wrapup.py' 2024-03-19T12:45:53,358 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/__init__.py' 2024-03-19T12:45:53,360 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/admba_3d_dev_mouse.py' 2024-03-19T12:45:53,362 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_cord.py' 2024-03-19T12:45:53,364 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/allen_mouse.py' 2024-03-19T12:45:53,366 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/azba_zfish.py' 2024-03-19T12:45:53,368 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py' 2024-03-19T12:45:53,370 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/humanatlas.py' 2024-03-19T12:45:53,372 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_developmental_ccf_mouse.py' 2024-03-19T12:45:53,374 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/kim_mouse.py' 2024-03-19T12:45:53,377 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/mpin_zfish.py' 2024-03-19T12:45:53,379 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/osten_mouse.py' 2024-03-19T12:45:53,381 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_lsfm_mouse.py' 2024-03-19T12:45:53,384 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/princeton_mouse.py' 2024-03-19T12:45:53,385 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py' 2024-03-19T12:45:53,387 adding 'brainglobe_atlasapi/atlas_generation/atlas_scripts/whs_sd_rat.py' 2024-03-19T12:45:53,390 adding 'brainglobe_atlasapi-2.0.4.dist-info/LICENSE' 2024-03-19T12:45:53,392 adding 'brainglobe_atlasapi-2.0.4.dist-info/METADATA' 2024-03-19T12:45:53,394 adding 'brainglobe_atlasapi-2.0.4.dist-info/WHEEL' 2024-03-19T12:45:53,395 adding 'brainglobe_atlasapi-2.0.4.dist-info/top_level.txt' 2024-03-19T12:45:53,397 adding 'brainglobe_atlasapi-2.0.4.dist-info/RECORD' 2024-03-19T12:45:53,400 removing build/bdist.linux-armv7l/wheel 2024-03-19T12:45:53,538 Building wheel for brainglobe-atlasapi (pyproject.toml): finished with status 'done' 2024-03-19T12:45:53,544 Created wheel for brainglobe-atlasapi: filename=brainglobe_atlasapi-2.0.4-py3-none-any.whl size=79864 sha256=0a7530f79c49e0c3943316ffabf7ffc0e551e85ff3080598473118f80dc2de5a 2024-03-19T12:45:53,546 Stored in directory: /tmp/pip-ephem-wheel-cache-9z_oj14i/wheels/45/0d/3c/0d886efd46181bd34a8d3b181d34a174cd5f4e4e850c98ed59 2024-03-19T12:45:53,560 Successfully built brainglobe-atlasapi 2024-03-19T12:45:53,566 Removed build tracker: '/tmp/pip-build-tracker-byo3zngc'