2024-03-20T04:58:41,382 Created temporary directory: /tmp/pip-build-tracker-w2dwfuyc 2024-03-20T04:58:41,383 Initialized build tracking at /tmp/pip-build-tracker-w2dwfuyc 2024-03-20T04:58:41,384 Created build tracker: /tmp/pip-build-tracker-w2dwfuyc 2024-03-20T04:58:41,384 Entered build tracker: /tmp/pip-build-tracker-w2dwfuyc 2024-03-20T04:58:41,385 Created temporary directory: /tmp/pip-wheel-y3lm4muf 2024-03-20T04:58:41,389 Created temporary directory: /tmp/pip-ephem-wheel-cache-bmasx4lh 2024-03-20T04:58:41,411 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T04:58:41,414 2 location(s) to search for versions of scarcc: 2024-03-20T04:58:41,414 * https://pypi.org/simple/scarcc/ 2024-03-20T04:58:41,414 * https://www.piwheels.org/simple/scarcc/ 2024-03-20T04:58:41,415 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-20T04:58:41,416 Getting page https://pypi.org/simple/scarcc/ 2024-03-20T04:58:41,417 Found index url https://pypi.org/simple/ 2024-03-20T04:58:41,632 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-20T04:58:41,634 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-20T04:58:41,635 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-20T04:58:41,635 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-20T04:58:41,636 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T04:58:41,637 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-20T04:58:41,637 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-20T04:58:41,638 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-20T04:58:41,639 Found index url https://www.piwheels.org/simple/ 2024-03-20T04:58:41,838 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-20T04:58:41,840 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-20T04:58:41,841 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-20T04:58:41,841 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-20T04:58:41,860 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-20T04:58:41,878 Collecting scarcc==0.0.21 2024-03-20T04:58:41,880 Created temporary directory: /tmp/pip-unpack-_1paokas 2024-03-20T04:58:42,090 Downloading scarcc-0.0.21.tar.gz (50 kB) 2024-03-20T04:58:42,255 Added scarcc==0.0.21 from https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz to build tracker '/tmp/pip-build-tracker-w2dwfuyc' 2024-03-20T04:58:42,260 Created temporary directory: /tmp/pip-build-env-r5_qtcw_ 2024-03-20T04:58:42,264 Installing build dependencies: started 2024-03-20T04:58:42,265 Running command pip subprocess to install build dependencies 2024-03-20T04:58:43,418 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-20T04:58:43,921 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T04:58:45,462 Collecting setuptools>=40.6.0 2024-03-20T04:58:45,479 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-20T04:58:45,701 Collecting wheel 2024-03-20T04:58:45,715 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-20T04:58:48,340 Installing collected packages: wheel, setuptools 2024-03-20T04:58:48,563 Creating /tmp/pip-build-env-r5_qtcw_/overlay/local/bin 2024-03-20T04:58:48,565 changing mode of /tmp/pip-build-env-r5_qtcw_/overlay/local/bin/wheel to 755 2024-03-20T04:58:50,825 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-20T04:58:51,319 Installing build dependencies: finished with status 'done' 2024-03-20T04:58:51,322 Getting requirements to build wheel: started 2024-03-20T04:58:51,323 Running command Getting requirements to build wheel 2024-03-20T04:58:51,850 running egg_info 2024-03-20T04:58:51,854 writing src/scarcc.egg-info/PKG-INFO 2024-03-20T04:58:51,857 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-20T04:58:51,858 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-20T04:58:51,860 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-20T04:58:51,898 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:51,901 adding license file 'LICENSE' 2024-03-20T04:58:51,905 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:51,981 Getting requirements to build wheel: finished with status 'done' 2024-03-20T04:58:51,990 Created temporary directory: /tmp/pip-modern-metadata-4ivw1art 2024-03-20T04:58:51,992 Preparing metadata (pyproject.toml): started 2024-03-20T04:58:51,994 Running command Preparing metadata (pyproject.toml) 2024-03-20T04:58:52,692 running dist_info 2024-03-20T04:58:52,697 creating /tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info 2024-03-20T04:58:52,701 writing /tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/PKG-INFO 2024-03-20T04:58:52,704 writing dependency_links to /tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/dependency_links.txt 2024-03-20T04:58:52,706 writing requirements to /tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/requires.txt 2024-03-20T04:58:52,707 writing top-level names to /tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/top_level.txt 2024-03-20T04:58:52,708 writing manifest file '/tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:52,736 reading manifest file '/tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:52,738 adding license file 'LICENSE' 2024-03-20T04:58:52,741 writing manifest file '/tmp/pip-modern-metadata-4ivw1art/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:52,742 creating '/tmp/pip-modern-metadata-4ivw1art/scarcc-0.0.21.dist-info' 2024-03-20T04:58:52,926 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-20T04:58:52,930 Source in /tmp/pip-wheel-y3lm4muf/scarcc_4b0ec85de21e4001a44b14668fd2ba35 has version 0.0.21, which satisfies requirement scarcc==0.0.21 from https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz 2024-03-20T04:58:52,931 Removed scarcc==0.0.21 from https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz from build tracker '/tmp/pip-build-tracker-w2dwfuyc' 2024-03-20T04:58:52,936 Created temporary directory: /tmp/pip-unpack-78ol21d2 2024-03-20T04:58:52,937 Created temporary directory: /tmp/pip-unpack-6izjqsqx 2024-03-20T04:58:52,944 Building wheels for collected packages: scarcc 2024-03-20T04:58:52,948 Created temporary directory: /tmp/pip-wheel-dyx1qi74 2024-03-20T04:58:52,949 Destination directory: /tmp/pip-wheel-dyx1qi74 2024-03-20T04:58:52,951 Building wheel for scarcc (pyproject.toml): started 2024-03-20T04:58:52,952 Running command Building wheel for scarcc (pyproject.toml) 2024-03-20T04:58:53,485 running bdist_wheel 2024-03-20T04:58:53,527 running build 2024-03-20T04:58:53,527 running build_py 2024-03-20T04:58:53,534 creating build 2024-03-20T04:58:53,534 creating build/lib 2024-03-20T04:58:53,535 creating build/lib/scarcc 2024-03-20T04:58:53,536 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-20T04:58:53,539 creating build/lib/scarcc/preparation 2024-03-20T04:58:53,540 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-20T04:58:53,542 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-20T04:58:53,544 creating build/lib/scarcc/utils 2024-03-20T04:58:53,545 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-20T04:58:53,546 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-20T04:58:53,548 creating build/lib/scarcc/sim_engine 2024-03-20T04:58:53,549 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-20T04:58:53,552 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-20T04:58:53,553 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-20T04:58:53,555 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-20T04:58:53,557 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-20T04:58:53,559 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-20T04:58:53,561 creating build/lib/scarcc/data_analysis 2024-03-20T04:58:53,562 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-20T04:58:53,564 creating build/lib/scarcc/preparation/perturbation 2024-03-20T04:58:53,565 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-20T04:58:53,567 creating build/lib/scarcc/preparation/target_gene 2024-03-20T04:58:53,568 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-20T04:58:53,570 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-20T04:58:53,572 creating build/lib/scarcc/preparation/metabolic_model 2024-03-20T04:58:53,574 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-20T04:58:53,576 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-20T04:58:53,578 creating build/lib/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,579 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,581 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,583 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,586 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,586 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,589 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,591 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,593 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,596 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,599 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,600 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,602 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,604 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,605 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,607 creating build/lib/scarcc/data_analysis/flux 2024-03-20T04:58:53,608 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T04:58:53,610 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T04:58:53,612 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T04:58:53,614 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T04:58:53,616 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T04:58:53,619 creating build/lib/scarcc/data_analysis/plot 2024-03-20T04:58:53,620 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T04:58:53,622 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T04:58:53,623 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T04:58:53,625 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T04:58:53,627 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T04:58:53,629 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T04:58:53,630 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T04:58:53,632 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T04:58:53,634 creating build/lib/scarcc/data_analysis/growth 2024-03-20T04:58:53,635 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T04:58:53,637 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T04:58:53,639 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T04:58:53,641 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T04:58:53,643 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T04:58:53,666 installing to build/bdist.linux-armv7l/wheel 2024-03-20T04:58:53,666 running install 2024-03-20T04:58:53,690 running install_lib 2024-03-20T04:58:53,696 creating build/bdist.linux-armv7l 2024-03-20T04:58:53,697 creating build/bdist.linux-armv7l/wheel 2024-03-20T04:58:53,698 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-20T04:58:53,700 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T04:58:53,701 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-20T04:58:53,703 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,704 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,706 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,708 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T04:58:53,711 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,712 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,714 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,716 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,718 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,720 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T04:58:53,722 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-20T04:58:53,723 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T04:58:53,725 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T04:58:53,726 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T04:58:53,728 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T04:58:53,730 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T04:58:53,732 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T04:58:53,733 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T04:58:53,735 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T04:58:53,737 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,738 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,740 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,742 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,744 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T04:58:53,746 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T04:58:53,747 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T04:58:53,749 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T04:58:53,751 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-20T04:58:53,753 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,754 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,756 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,759 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,761 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,763 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,765 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T04:58:53,768 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-20T04:58:53,769 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T04:58:53,770 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T04:58:53,772 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T04:58:53,774 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T04:58:53,776 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T04:58:53,777 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T04:58:53,780 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T04:58:53,781 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T04:58:53,783 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T04:58:53,785 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T04:58:53,787 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T04:58:53,789 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T04:58:53,791 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T04:58:53,792 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T04:58:53,794 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T04:58:53,796 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-20T04:58:53,798 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T04:58:53,799 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T04:58:53,801 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T04:58:53,803 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T04:58:53,805 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T04:58:53,807 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T04:58:53,809 running install_egg_info 2024-03-20T04:58:53,820 running egg_info 2024-03-20T04:58:53,823 writing src/scarcc.egg-info/PKG-INFO 2024-03-20T04:58:53,826 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-20T04:58:53,827 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-20T04:58:53,828 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-20T04:58:53,847 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:53,850 adding license file 'LICENSE' 2024-03-20T04:58:53,854 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T04:58:53,855 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.0.21-py3.11.egg-info 2024-03-20T04:58:53,865 running install_scripts 2024-03-20T04:58:53,880 creating build/bdist.linux-armv7l/wheel/scarcc-0.0.21.dist-info/WHEEL 2024-03-20T04:58:53,883 creating '/tmp/pip-wheel-dyx1qi74/.tmp-g8ugldcq/scarcc-0.0.21-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-20T04:58:53,885 adding 'scarcc/__init__.py' 2024-03-20T04:58:53,887 adding 'scarcc/data_analysis/__init__.py' 2024-03-20T04:58:53,889 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-20T04:58:53,890 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-20T04:58:53,892 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-20T04:58:53,893 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-20T04:58:53,894 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-20T04:58:53,896 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-20T04:58:53,898 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-20T04:58:53,900 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-20T04:58:53,902 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-20T04:58:53,903 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-20T04:58:53,905 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-20T04:58:53,906 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-20T04:58:53,908 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-20T04:58:53,909 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-20T04:58:53,910 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-20T04:58:53,911 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-20T04:58:53,913 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-20T04:58:53,914 adding 'scarcc/preparation/__init__.py' 2024-03-20T04:58:53,916 adding 'scarcc/preparation/find_directory.py' 2024-03-20T04:58:53,917 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-20T04:58:53,919 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-20T04:58:53,921 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-20T04:58:53,922 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-20T04:58:53,923 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-20T04:58:53,924 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-20T04:58:53,927 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-20T04:58:53,928 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-20T04:58:53,930 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-20T04:58:53,932 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-20T04:58:53,934 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-20T04:58:53,936 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-20T04:58:53,938 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-20T04:58:53,939 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-20T04:58:53,941 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-20T04:58:53,943 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-20T04:58:53,944 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-20T04:58:53,946 adding 'scarcc/sim_engine/__init__.py' 2024-03-20T04:58:53,947 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-20T04:58:53,949 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-20T04:58:53,950 adding 'scarcc/sim_engine/output.py' 2024-03-20T04:58:53,952 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-20T04:58:53,953 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-20T04:58:53,955 adding 'scarcc/utils/__init__.py' 2024-03-20T04:58:53,957 adding 'scarcc/utils/util.py' 2024-03-20T04:58:53,959 adding 'scarcc-0.0.21.dist-info/LICENSE' 2024-03-20T04:58:53,960 adding 'scarcc-0.0.21.dist-info/METADATA' 2024-03-20T04:58:53,960 adding 'scarcc-0.0.21.dist-info/WHEEL' 2024-03-20T04:58:53,962 adding 'scarcc-0.0.21.dist-info/top_level.txt' 2024-03-20T04:58:53,963 adding 'scarcc-0.0.21.dist-info/RECORD' 2024-03-20T04:58:53,965 removing build/bdist.linux-armv7l/wheel 2024-03-20T04:58:54,073 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-20T04:58:54,079 Created wheel for scarcc: filename=scarcc-0.0.21-py3-none-any.whl size=62167 sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f 2024-03-20T04:58:54,080 Stored in directory: /tmp/pip-ephem-wheel-cache-bmasx4lh/wheels/38/9a/df/a8ef656830f128ff7da77ba33693de43fa55f4b7e34ad73b79 2024-03-20T04:58:54,091 Successfully built scarcc 2024-03-20T04:58:54,097 Removed build tracker: '/tmp/pip-build-tracker-w2dwfuyc'