2024-03-20T13:29:16,578 Created temporary directory: /tmp/pip-build-tracker-lqqf1fmq
2024-03-20T13:29:16,580 Initialized build tracking at /tmp/pip-build-tracker-lqqf1fmq
2024-03-20T13:29:16,580 Created build tracker: /tmp/pip-build-tracker-lqqf1fmq
2024-03-20T13:29:16,580 Entered build tracker: /tmp/pip-build-tracker-lqqf1fmq
2024-03-20T13:29:16,580 Created temporary directory: /tmp/pip-wheel-6ay0__88
2024-03-20T13:29:16,585 Created temporary directory: /tmp/pip-ephem-wheel-cache-csf16nau
2024-03-20T13:29:16,611 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-20T13:29:16,615 2 location(s) to search for versions of moleculekit:
2024-03-20T13:29:16,615 * https://pypi.org/simple/moleculekit/
2024-03-20T13:29:16,615 * https://www.piwheels.org/simple/moleculekit/
2024-03-20T13:29:16,615 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-03-20T13:29:16,616 Getting page https://pypi.org/simple/moleculekit/
2024-03-20T13:29:16,618 Found index url https://pypi.org/simple/
2024-03-20T13:29:16,675 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-03-20T13:29:16,717   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,718   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-03-20T13:29:16,718   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,718   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-03-20T13:29:16,718   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,719   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-03-20T13:29:16,719   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,719   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-03-20T13:29:16,719   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,720   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-03-20T13:29:16,720   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,720   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-03-20T13:29:16,720   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,721   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-03-20T13:29:16,721   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,721   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-03-20T13:29:16,721   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,721   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-03-20T13:29:16,722   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,722   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-03-20T13:29:16,722   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,722   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-03-20T13:29:16,723   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,723   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-03-20T13:29:16,723   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,723   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-03-20T13:29:16,724   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,724   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-03-20T13:29:16,724   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,724   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-03-20T13:29:16,724   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,725   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-03-20T13:29:16,725   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,725   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-03-20T13:29:16,725   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,726   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-03-20T13:29:16,726   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,726   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-03-20T13:29:16,726   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,727   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-03-20T13:29:16,727   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,727   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-03-20T13:29:16,727   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,727   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-03-20T13:29:16,728   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,728   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-03-20T13:29:16,728   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,728   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-03-20T13:29:16,729   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,729   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-03-20T13:29:16,729   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,729   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-03-20T13:29:16,730   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,730   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-03-20T13:29:16,730   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,730   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-03-20T13:29:16,730   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,731   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-03-20T13:29:16,731   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,731   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-03-20T13:29:16,731   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,732   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-03-20T13:29:16,732   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,732   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-03-20T13:29:16,732   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,733   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-03-20T13:29:16,733   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,733   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
2024-03-20T13:29:16,733   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/eb/72/b091a120100302ee0b23d184377c59cbc0a7ba597225f90328ce36f00504/moleculekit-0.3.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,733   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-03-20T13:29:16,734   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
2024-03-20T13:29:16,734   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/93/60/0d8fb434654ca07dbd7e9ce3f8d8083e435866650d2a6423bd1fe39cfcf2/moleculekit-0.3.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,734   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
2024-03-20T13:29:16,735   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/94/5a/b800d3737fc73a0197bf983ce179f8bedaa71a331029a733aefedc2a8a0c/moleculekit-0.3.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,735   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2024-03-20T13:29:16,735   Found link https://files.pythonhosted.org/packages/29/c4/2af9ce826d6a8d2327401dd1a05b3beff8e1f96911d0e334db20410975ee/moleculekit-0.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.7
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2024-03-20T13:29:16,736   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
2024-03-20T13:29:16,736   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1f/d2/4da1254f5b07bedf974fdb9f19ab694a6cf553dc50ab700e3b09ec000031/moleculekit-0.3.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,736   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-03-20T13:29:16,737   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,737   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-03-20T13:29:16,737   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,737   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
2024-03-20T13:29:16,737   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ed/8c/cf4a2f026f7b867bcc33cfac6c1fede5ee244c962112f0dc245fcac0939b/moleculekit-0.4.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,738   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-03-20T13:29:16,738   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,738   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
2024-03-20T13:29:16,738   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/26/45/55b970222953abfaff88d3ee5bbe64b544af8e686254b80f9dbcdc027754/moleculekit-0.4.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,739   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-03-20T13:29:16,739   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,739   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
2024-03-20T13:29:16,739   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3f/a5/68b5af554f766d3dceef94275a75af28358200e0f741a86d38db878c60e1/moleculekit-0.4.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,740   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
2024-03-20T13:29:16,740   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,740   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
2024-03-20T13:29:16,740   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/b0/15/bc106c1d99e2b235c80427b4d70f6392bf76a9fe17d2c8df562a03a79aaf/moleculekit-0.5.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,740   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
2024-03-20T13:29:16,741   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/11/34/1eef198a596de2bbe11b5d156183d4e8853296cee4f6eccb1e93f1acfe6b/moleculekit-0.5.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,741   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
2024-03-20T13:29:16,741   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/c2/ae/6dcb36295ba009458f4ac17d3099f65f30ef7b52ee289ce857eaa09901e9/moleculekit-0.5.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,741   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5e/49/34aa32d017a3ff0c43e9743813fb882a1b2f4721a6429a14d3974d30b013/moleculekit-0.5.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,742   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-20T13:29:16,742   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/33/cb/c92c01bcbe6721a0de0efc2a6000170f30941c58471578d25966f935c655/moleculekit-0.5.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-20T13:29:16,742   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-20T13:29:16,749   Found link https://files.pythonhosted.org/packages/b9/00/f8d458320556166424a904edf41546e5d55d31743c27c8f63467f607ac62/moleculekit-0.9.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.5
2024-03-20T13:29:16,750   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-03-20T13:29:16,750   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-03-20T13:29:16,750   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-03-20T13:29:16,750   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-03-20T13:29:16,751   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-03-20T13:29:16,751   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-03-20T13:29:16,751   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-03-20T13:29:16,751   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-03-20T13:29:16,752   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-03-20T13:29:16,752   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-03-20T13:29:16,752   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-03-20T13:29:16,752   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-03-20T13:29:16,753   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-03-20T13:29:16,753   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-03-20T13:29:16,753   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-03-20T13:29:16,753   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-03-20T13:29:16,754   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-03-20T13:29:16,754   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-03-20T13:29:16,754   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-03-20T13:29:16,754   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-03-20T13:29:16,755   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-03-20T13:29:16,755   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-03-20T13:29:16,755   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-03-20T13:29:16,756   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-03-20T13:29:16,756   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-03-20T13:29:16,756   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-03-20T13:29:16,756   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-03-20T13:29:16,757   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-03-20T13:29:16,757   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-03-20T13:29:16,757   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-03-20T13:29:16,757   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-03-20T13:29:16,758   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-03-20T13:29:16,758   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-03-20T13:29:16,758   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-03-20T13:29:16,759   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-03-20T13:29:16,759   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-03-20T13:29:16,759   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-03-20T13:29:16,759   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-03-20T13:29:16,760   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-03-20T13:29:16,760   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-03-20T13:29:16,760   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-03-20T13:29:16,761   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-03-20T13:29:16,761   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-03-20T13:29:16,761   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-03-20T13:29:16,761   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-03-20T13:29:16,762   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-03-20T13:29:16,762   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-03-20T13:29:16,762   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-03-20T13:29:16,763   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-03-20T13:29:16,763   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-03-20T13:29:16,764   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-03-20T13:29:16,764   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-03-20T13:29:16,765   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-03-20T13:29:16,765   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-03-20T13:29:16,766   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-03-20T13:29:16,767   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-03-20T13:29:16,767   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-03-20T13:29:16,768   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-03-20T13:29:16,768   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-03-20T13:29:16,769   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-03-20T13:29:16,769   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-03-20T13:29:16,770   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-03-20T13:29:16,770   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-03-20T13:29:16,771   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-03-20T13:29:16,772   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-03-20T13:29:16,772   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-03-20T13:29:16,773   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-03-20T13:29:16,773   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-03-20T13:29:16,774   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-03-20T13:29:16,774   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-03-20T13:29:16,775   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-03-20T13:29:16,775   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-03-20T13:29:16,776   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-03-20T13:29:16,776   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-03-20T13:29:16,777   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-03-20T13:29:16,778   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-03-20T13:29:16,778   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-03-20T13:29:16,779   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-03-20T13:29:16,779   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-03-20T13:29:16,780   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-03-20T13:29:16,780   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-03-20T13:29:16,781   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-03-20T13:29:16,781   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-03-20T13:29:16,782   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-03-20T13:29:16,782   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-03-20T13:29:16,783   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-03-20T13:29:16,783   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-03-20T13:29:16,784   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-03-20T13:29:16,784   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-03-20T13:29:16,785   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-03-20T13:29:16,786   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-03-20T13:29:16,786   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-03-20T13:29:16,787   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-03-20T13:29:16,787   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-03-20T13:29:16,788   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-03-20T13:29:16,788   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-03-20T13:29:16,789   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-03-20T13:29:16,789   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-03-20T13:29:16,790   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-03-20T13:29:16,790   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-03-20T13:29:16,791   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-03-20T13:29:16,792   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-03-20T13:29:16,792   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-03-20T13:29:16,793   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-03-20T13:29:16,793   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-03-20T13:29:16,794   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-03-20T13:29:16,794 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-03-20T13:29:16,795 Getting page https://www.piwheels.org/simple/moleculekit/
2024-03-20T13:29:16,796 Found index url https://www.piwheels.org/simple/
2024-03-20T13:29:17,197 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-03-20T13:29:17,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv6l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv7l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv6l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv6l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv7l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv6l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv7l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv6l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv7l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-20T13:29:17,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-20T13:29:17,324   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-20T13:29:17,336   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-20T13:29:17,350 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-03-20T13:29:17,351 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-03-20T13:29:17,392 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-03-20T13:29:17,408 Collecting moleculekit==1.8.27
2024-03-20T13:29:17,410   Created temporary directory: /tmp/pip-unpack-9p2k40ph
2024-03-20T13:29:17,458   Downloading moleculekit-1.8.27.tar.gz (6.8 MB)
2024-03-20T13:29:19,634   Added moleculekit==1.8.27 from https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz to build tracker '/tmp/pip-build-tracker-lqqf1fmq'
2024-03-20T13:29:19,642   Created temporary directory: /tmp/pip-build-env-8jerv7_0
2024-03-20T13:29:19,652   Installing build dependencies: started
2024-03-20T13:29:19,653   Running command pip subprocess to install build dependencies
2024-03-20T13:29:20,849   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-03-20T13:29:21,382   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-20T13:29:23,228   Collecting setuptools
2024-03-20T13:29:23,246     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB)
2024-03-20T13:29:24,288   Collecting numpy>=1.18.5
2024-03-20T13:29:24,306     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp39-cp39-linux_armv7l.whl (5.6 MB)
2024-03-20T13:29:25,930   Collecting Cython>=0.29.21
2024-03-20T13:29:25,948     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-03-20T13:29:26,457   Collecting toml
2024-03-20T13:29:26,475     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-03-20T13:29:26,759   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-03-20T13:29:26,771     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-03-20T13:29:26,792        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.1 MB/s eta 0:00:00
2024-03-20T13:29:26,934   Collecting tomli (from versioneer[toml]==0.28)
2024-03-20T13:29:26,950     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-03-20T13:29:28,857   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-03-20T13:29:28,892     Creating /tmp/pip-build-env-8jerv7_0/overlay/bin
2024-03-20T13:29:28,894     changing mode of /tmp/pip-build-env-8jerv7_0/overlay/bin/versioneer to 755
2024-03-20T13:29:39,986     changing mode of /tmp/pip-build-env-8jerv7_0/overlay/bin/f2py to 755
2024-03-20T13:29:43,452     changing mode of /tmp/pip-build-env-8jerv7_0/overlay/bin/cygdb to 755
2024-03-20T13:29:43,455     changing mode of /tmp/pip-build-env-8jerv7_0/overlay/bin/cython to 755
2024-03-20T13:29:43,457     changing mode of /tmp/pip-build-env-8jerv7_0/overlay/bin/cythonize to 755
2024-03-20T13:29:43,482   Successfully installed Cython-3.0.9 numpy-1.26.4 setuptools-69.2.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2024-03-20T13:29:44,133   Installing build dependencies: finished with status 'done'
2024-03-20T13:29:44,138   Getting requirements to build wheel: started
2024-03-20T13:29:44,139   Running command Getting requirements to build wheel
2024-03-20T13:30:30,315   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-03-20T13:30:39,335   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,335   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,335   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,335   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,335   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-20T13:30:39,336   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-20T13:30:39,337   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-20T13:30:39,337   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-03-20T13:30:39,337   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-20T13:30:39,337   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-03-20T13:30:39,337   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-03-20T13:30:39,337   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-03-20T13:30:39,337   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-03-20T13:30:39,337   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-03-20T13:30:39,338   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-03-20T13:30:39,338   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-03-20T13:30:39,338   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-03-20T13:30:39,338   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-03-20T13:30:39,338   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-03-20T13:30:39,338   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-03-20T13:30:39,338   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-03-20T13:30:39,339   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-03-20T13:30:39,339   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-03-20T13:30:39,339   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-03-20T13:30:39,622   running egg_info
2024-03-20T13:30:39,628   writing moleculekit.egg-info/PKG-INFO
2024-03-20T13:30:39,632   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-20T13:30:39,634   writing requirements to moleculekit.egg-info/requires.txt
2024-03-20T13:30:39,635   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-20T13:30:39,667   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,667   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,667   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,667   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,667   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,667   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,668   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,669   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,670   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,670   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,670   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,670   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-20T13:30:39,670   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,670   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,671   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:39,672   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-03-20T13:30:39,672   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-20T13:30:39,691   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-20T13:30:39,724   reading manifest template 'MANIFEST.in'
2024-03-20T13:30:39,979   no previously-included directories found matching 'moleculekit/test-data'
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2024-03-20T13:30:41,380   Getting requirements to build wheel: finished with status 'done'
2024-03-20T13:30:41,395   Installing backend dependencies: started
2024-03-20T13:30:41,396   Running command pip subprocess to install backend dependencies
2024-03-20T13:30:42,652   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-03-20T13:30:43,211   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-20T13:30:43,591   Collecting wheel
2024-03-20T13:30:46,510     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-03-20T13:30:47,958   Installing collected packages: wheel
2024-03-20T13:30:48,181     Creating /tmp/pip-build-env-8jerv7_0/normal/bin
2024-03-20T13:30:48,183     changing mode of /tmp/pip-build-env-8jerv7_0/normal/bin/wheel to 755
2024-03-20T13:30:48,195   Successfully installed wheel-0.43.0
2024-03-20T13:30:48,589   Installing backend dependencies: finished with status 'done'
2024-03-20T13:30:48,592   Created temporary directory: /tmp/pip-modern-metadata-mpm3wfm8
2024-03-20T13:30:48,595   Preparing metadata (pyproject.toml): started
2024-03-20T13:30:48,595   Running command Preparing metadata (pyproject.toml)
2024-03-20T13:30:51,085   running dist_info
2024-03-20T13:30:51,087   creating /tmp/pip-modern-metadata-mpm3wfm8/moleculekit.egg-info
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2024-03-20T13:30:51,139   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,139   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,139   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,140   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,141   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,141   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,141   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,141   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,141   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,142   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,143   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,143   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,143   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,143   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,144   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,144   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,144   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,144   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,144   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,145   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,145   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,145   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,145   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,146   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:51,153   reading manifest file '/tmp/pip-modern-metadata-mpm3wfm8/moleculekit.egg-info/SOURCES.txt'
2024-03-20T13:30:51,155   reading manifest template 'MANIFEST.in'
2024-03-20T13:30:51,433   no previously-included directories found matching 'moleculekit/test-data'
2024-03-20T13:30:51,434   no previously-included directories found matching 'moleculekit/tests'
2024-03-20T13:30:51,434   no previously-included directories found matching 'package'
2024-03-20T13:30:51,435   adding license file 'LICENSE'
2024-03-20T13:30:51,449   writing manifest file '/tmp/pip-modern-metadata-mpm3wfm8/moleculekit.egg-info/SOURCES.txt'
2024-03-20T13:30:51,458   creating '/tmp/pip-modern-metadata-mpm3wfm8/moleculekit-1.8.27.dist-info'
2024-03-20T13:30:51,655   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-20T13:30:51,661   Source in /tmp/pip-wheel-6ay0__88/moleculekit_a3bf1589fe2e4d7cba313583cc42d9e6 has version 1.8.27, which satisfies requirement moleculekit==1.8.27 from https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz
2024-03-20T13:30:51,662   Removed moleculekit==1.8.27 from https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz from build tracker '/tmp/pip-build-tracker-lqqf1fmq'
2024-03-20T13:30:51,668 Created temporary directory: /tmp/pip-unpack-ft6p_2kl
2024-03-20T13:30:51,669 Created temporary directory: /tmp/pip-unpack-haymnd1s
2024-03-20T13:30:51,677 Building wheels for collected packages: moleculekit
2024-03-20T13:30:51,681   Created temporary directory: /tmp/pip-wheel-0_75ss_k
2024-03-20T13:30:51,681   Destination directory: /tmp/pip-wheel-0_75ss_k
2024-03-20T13:30:51,684   Building wheel for moleculekit (pyproject.toml): started
2024-03-20T13:30:51,684   Running command Building wheel for moleculekit (pyproject.toml)
2024-03-20T13:30:54,031   running bdist_wheel
2024-03-20T13:30:54,048   running build
2024-03-20T13:30:54,048   running build_py
2024-03-20T13:30:54,056   creating build
2024-03-20T13:30:54,057   creating build/lib.linux-armv7l-cpython-39
2024-03-20T13:30:54,057   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,058   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,060   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,062   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,063   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,065   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,067   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,068   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,070   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,072   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,074   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,079   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,081   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,083   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,084   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,086   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,088   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,090   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,092   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,097   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,099   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,102   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,105   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,106   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,108   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,110   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,112   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,114   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,117   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,118   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,120   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,122   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,124   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,126   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,129   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,132   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,134   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,135   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-03-20T13:30:54,138   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-20T13:30:54,139   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-20T13:30:54,143   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-20T13:30:54,145   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-03-20T13:30:54,148   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-20T13:30:54,149   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-20T13:30:54,151   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-20T13:30:54,154   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-20T13:30:54,155   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-20T13:30:54,156   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-20T13:30:54,158   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-20T13:30:54,160   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-03-20T13:30:54,163   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,164   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,166   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,168   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,171   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,173   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,175   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-03-20T13:30:54,178   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-20T13:30:54,179   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-20T13:30:54,180   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-20T13:30:54,182   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-20T13:30:54,186   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,186   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,189   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,191   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,193   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,195   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,196   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,199   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,201   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,203   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,205   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,207   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,209   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,212   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,215   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-03-20T13:30:54,217   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-03-20T13:30:54,218   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-03-20T13:30:54,220   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-20T13:30:54,221   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-20T13:30:54,223   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-20T13:30:54,225   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-20T13:30:54,226   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-03-20T13:30:54,229   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-20T13:30:54,230   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-20T13:30:54,232   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-03-20T13:30:54,234   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-20T13:30:54,235   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-20T13:30:54,237   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-20T13:30:54,239   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-20T13:30:54,240   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-03-20T13:30:54,243   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-20T13:30:54,244   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-20T13:30:54,246   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-03-20T13:30:54,248   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-20T13:30:54,249   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-20T13:30:54,251   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-20T13:30:54,253   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-20T13:30:54,255   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-03-20T13:30:54,258   running egg_info
2024-03-20T13:30:54,263   writing moleculekit.egg-info/PKG-INFO
2024-03-20T13:30:54,266   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-20T13:30:54,268   writing requirements to moleculekit.egg-info/requires.txt
2024-03-20T13:30:54,269   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-20T13:30:54,287   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,288   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,288   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,288   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,288   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,288   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,288   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,289   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,290   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,291   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,292   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,293   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,294   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,295   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,297   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,297   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,297   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,297   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,297   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,298   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,298   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,298   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,299   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,299   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,299   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,300   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,300   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,300   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,300   dependency /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-20T13:30:54,306   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-20T13:30:54,316   reading manifest template 'MANIFEST.in'
2024-03-20T13:30:54,557   no previously-included directories found matching 'moleculekit/test-data'
2024-03-20T13:30:54,559   no previously-included directories found matching 'moleculekit/tests'
2024-03-20T13:30:54,560   no previously-included directories found matching 'package'
2024-03-20T13:30:54,560   adding license file 'LICENSE'
2024-03-20T13:30:54,578   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-20T13:30:54,589   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-03-20T13:30:54,589   !!

2024-03-20T13:30:54,589           ********************************************************************************
2024-03-20T13:30:54,589           ############################
2024-03-20T13:30:54,589           # Package would be ignored #
2024-03-20T13:30:54,590           ############################
2024-03-20T13:30:54,590           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-03-20T13:30:54,590           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,590           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,590           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-03-20T13:30:54,590           to the `packages` configuration field.

2024-03-20T13:30:54,591           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,591           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,591           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,591           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,591           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,591           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-03-20T13:30:54,592           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-03-20T13:30:54,592           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,592           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,592           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,592           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,592           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,593           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,593                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,593                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,593                 directory, all directories are treated like packages.
2024-03-20T13:30:54,593           ********************************************************************************

2024-03-20T13:30:54,593   !!
2024-03-20T13:30:54,594     check.warn(importable)
2024-03-20T13:30:54,594   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-03-20T13:30:54,594   !!

2024-03-20T13:30:54,594           ********************************************************************************
2024-03-20T13:30:54,594           ############################
2024-03-20T13:30:54,594           # Package would be ignored #
2024-03-20T13:30:54,594           ############################
2024-03-20T13:30:54,595           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-03-20T13:30:54,595           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,595           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,595           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-03-20T13:30:54,595           to the `packages` configuration field.

2024-03-20T13:30:54,595           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,595           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,596           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,596           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,596           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,596           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-03-20T13:30:54,596           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-03-20T13:30:54,597           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,597           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,597           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,597           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,597           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,598           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,598                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,598                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,598                 directory, all directories are treated like packages.
2024-03-20T13:30:54,598           ********************************************************************************

2024-03-20T13:30:54,598   !!
2024-03-20T13:30:54,598     check.warn(importable)
2024-03-20T13:30:54,599   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-03-20T13:30:54,599   !!

2024-03-20T13:30:54,599           ********************************************************************************
2024-03-20T13:30:54,599           ############################
2024-03-20T13:30:54,599           # Package would be ignored #
2024-03-20T13:30:54,599           ############################
2024-03-20T13:30:54,599           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-03-20T13:30:54,600           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,600           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,600           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-03-20T13:30:54,600           to the `packages` configuration field.

2024-03-20T13:30:54,600           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,600           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,600           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,601           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,601           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,601           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-03-20T13:30:54,601           already explicitly excluding 'moleculekit.cython_utils' via
2024-03-20T13:30:54,601           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,601           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,601           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,602           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,602           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,602           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,602                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,602                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,602                 directory, all directories are treated like packages.
2024-03-20T13:30:54,603           ********************************************************************************

2024-03-20T13:30:54,603   !!
2024-03-20T13:30:54,603     check.warn(importable)
2024-03-20T13:30:54,603   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-03-20T13:30:54,603   !!

2024-03-20T13:30:54,603           ********************************************************************************
2024-03-20T13:30:54,603           ############################
2024-03-20T13:30:54,604           # Package would be ignored #
2024-03-20T13:30:54,604           ############################
2024-03-20T13:30:54,604           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-03-20T13:30:54,604           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,604           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,604           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-03-20T13:30:54,604           to the `packages` configuration field.

2024-03-20T13:30:54,605           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,605           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,605           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,605           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,605           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,605           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-03-20T13:30:54,605           already explicitly excluding 'moleculekit.distance_utils' via
2024-03-20T13:30:54,606           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,606           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,606           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,606           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,606           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,607           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,607                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,607                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,607                 directory, all directories are treated like packages.
2024-03-20T13:30:54,607           ********************************************************************************

2024-03-20T13:30:54,607   !!
2024-03-20T13:30:54,607     check.warn(importable)
2024-03-20T13:30:54,607   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-03-20T13:30:54,608   !!

2024-03-20T13:30:54,608           ********************************************************************************
2024-03-20T13:30:54,608           ############################
2024-03-20T13:30:54,608           # Package would be ignored #
2024-03-20T13:30:54,608           ############################
2024-03-20T13:30:54,608           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-03-20T13:30:54,608           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,608           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,609           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-03-20T13:30:54,609           to the `packages` configuration field.

2024-03-20T13:30:54,609           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,609           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,609           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,609           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,610           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,610           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-03-20T13:30:54,610           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-03-20T13:30:54,610           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,610           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,610           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,610           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,611           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,611           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,611                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,611                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,611                 directory, all directories are treated like packages.
2024-03-20T13:30:54,611           ********************************************************************************

2024-03-20T13:30:54,612   !!
2024-03-20T13:30:54,612     check.warn(importable)
2024-03-20T13:30:54,612   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-03-20T13:30:54,612   !!

2024-03-20T13:30:54,612           ********************************************************************************
2024-03-20T13:30:54,612           ############################
2024-03-20T13:30:54,612           # Package would be ignored #
2024-03-20T13:30:54,613           ############################
2024-03-20T13:30:54,613           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-03-20T13:30:54,613           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,613           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,613           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-03-20T13:30:54,613           to the `packages` configuration field.

2024-03-20T13:30:54,613           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,614           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,614           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,614           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,614           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,614           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-03-20T13:30:54,614           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-03-20T13:30:54,615           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,615           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,615           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,615           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,615           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,616           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,616                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,616                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,616                 directory, all directories are treated like packages.
2024-03-20T13:30:54,616           ********************************************************************************

2024-03-20T13:30:54,616   !!
2024-03-20T13:30:54,616     check.warn(importable)
2024-03-20T13:30:54,617   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-03-20T13:30:54,617   !!

2024-03-20T13:30:54,617           ********************************************************************************
2024-03-20T13:30:54,617           ############################
2024-03-20T13:30:54,617           # Package would be ignored #
2024-03-20T13:30:54,617           ############################
2024-03-20T13:30:54,617           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-03-20T13:30:54,617           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,618           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,618           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-03-20T13:30:54,618           to the `packages` configuration field.

2024-03-20T13:30:54,618           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,618           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,618           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,619           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,619           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,619           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-03-20T13:30:54,619           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-03-20T13:30:54,619           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,619           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,619           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,620           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,620           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,620           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,620                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,620                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,620                 directory, all directories are treated like packages.
2024-03-20T13:30:54,621           ********************************************************************************

2024-03-20T13:30:54,621   !!
2024-03-20T13:30:54,621     check.warn(importable)
2024-03-20T13:30:54,621   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-03-20T13:30:54,621   !!

2024-03-20T13:30:54,621           ********************************************************************************
2024-03-20T13:30:54,621           ############################
2024-03-20T13:30:54,622           # Package would be ignored #
2024-03-20T13:30:54,622           ############################
2024-03-20T13:30:54,622           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-03-20T13:30:54,622           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,622           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,622           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-03-20T13:30:54,622           to the `packages` configuration field.

2024-03-20T13:30:54,623           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,623           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,623           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,623           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,623           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,623           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-03-20T13:30:54,624           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-03-20T13:30:54,624           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,624           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,624           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,624           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,624           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,625           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,625                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,625                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,625                 directory, all directories are treated like packages.
2024-03-20T13:30:54,625           ********************************************************************************

2024-03-20T13:30:54,625   !!
2024-03-20T13:30:54,625     check.warn(importable)
2024-03-20T13:30:54,626   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-03-20T13:30:54,626   !!

2024-03-20T13:30:54,626           ********************************************************************************
2024-03-20T13:30:54,626           ############################
2024-03-20T13:30:54,626           # Package would be ignored #
2024-03-20T13:30:54,626           ############################
2024-03-20T13:30:54,626           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-03-20T13:30:54,626           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,627           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,627           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-03-20T13:30:54,627           to the `packages` configuration field.

2024-03-20T13:30:54,627           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,627           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,627           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,628           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,628           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,628           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-03-20T13:30:54,628           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-03-20T13:30:54,628           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,628           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,629           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,629           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,629           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,629           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,630                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,630                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,630                 directory, all directories are treated like packages.
2024-03-20T13:30:54,630           ********************************************************************************

2024-03-20T13:30:54,630   !!
2024-03-20T13:30:54,630     check.warn(importable)
2024-03-20T13:30:54,630   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-03-20T13:30:54,631   !!

2024-03-20T13:30:54,631           ********************************************************************************
2024-03-20T13:30:54,631           ############################
2024-03-20T13:30:54,631           # Package would be ignored #
2024-03-20T13:30:54,631           ############################
2024-03-20T13:30:54,631           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-03-20T13:30:54,631           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,631           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,632           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-03-20T13:30:54,632           to the `packages` configuration field.

2024-03-20T13:30:54,632           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,632           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,632           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,632           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,633           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,633           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-03-20T13:30:54,633           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-03-20T13:30:54,633           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,633           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,633           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,633           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,634           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,634           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,634                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,634                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,634                 directory, all directories are treated like packages.
2024-03-20T13:30:54,634           ********************************************************************************

2024-03-20T13:30:54,635   !!
2024-03-20T13:30:54,635     check.warn(importable)
2024-03-20T13:30:54,635   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-03-20T13:30:54,635   !!

2024-03-20T13:30:54,635           ********************************************************************************
2024-03-20T13:30:54,635           ############################
2024-03-20T13:30:54,635           # Package would be ignored #
2024-03-20T13:30:54,635           ############################
2024-03-20T13:30:54,636           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-03-20T13:30:54,636           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,636           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,636           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-03-20T13:30:54,636           to the `packages` configuration field.

2024-03-20T13:30:54,636           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,637           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,637           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,637           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,637           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,637           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-03-20T13:30:54,637           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-03-20T13:30:54,638           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,638           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,638           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,638           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,638           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,638           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,639                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,639                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,639                 directory, all directories are treated like packages.
2024-03-20T13:30:54,639           ********************************************************************************

2024-03-20T13:30:54,639   !!
2024-03-20T13:30:54,639     check.warn(importable)
2024-03-20T13:30:54,639   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-03-20T13:30:54,639   !!

2024-03-20T13:30:54,640           ********************************************************************************
2024-03-20T13:30:54,640           ############################
2024-03-20T13:30:54,640           # Package would be ignored #
2024-03-20T13:30:54,640           ############################
2024-03-20T13:30:54,640           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-03-20T13:30:54,640           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,640           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,641           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-03-20T13:30:54,641           to the `packages` configuration field.

2024-03-20T13:30:54,641           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,641           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,641           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,641           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,642           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,642           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-03-20T13:30:54,642           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-03-20T13:30:54,642           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,642           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,642           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,642           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,643           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,643           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,643                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,643                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,643                 directory, all directories are treated like packages.
2024-03-20T13:30:54,643           ********************************************************************************

2024-03-20T13:30:54,644   !!
2024-03-20T13:30:54,644     check.warn(importable)
2024-03-20T13:30:54,644   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-03-20T13:30:54,644   !!

2024-03-20T13:30:54,644           ********************************************************************************
2024-03-20T13:30:54,644           ############################
2024-03-20T13:30:54,644           # Package would be ignored #
2024-03-20T13:30:54,644           ############################
2024-03-20T13:30:54,645           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-03-20T13:30:54,645           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,645           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,645           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-03-20T13:30:54,645           to the `packages` configuration field.

2024-03-20T13:30:54,645           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,646           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,646           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,646           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,646           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,647           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-03-20T13:30:54,647           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-03-20T13:30:54,647           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,647           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,647           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,647           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,648           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,648           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,648                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,648                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,648                 directory, all directories are treated like packages.
2024-03-20T13:30:54,648           ********************************************************************************

2024-03-20T13:30:54,649   !!
2024-03-20T13:30:54,649     check.warn(importable)
2024-03-20T13:30:54,649   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-03-20T13:30:54,649   !!

2024-03-20T13:30:54,649           ********************************************************************************
2024-03-20T13:30:54,649           ############################
2024-03-20T13:30:54,649           # Package would be ignored #
2024-03-20T13:30:54,649           ############################
2024-03-20T13:30:54,650           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-03-20T13:30:54,650           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,650           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,650           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-03-20T13:30:54,650           to the `packages` configuration field.

2024-03-20T13:30:54,650           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,650           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,651           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,651           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,651           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,651           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-03-20T13:30:54,651           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-03-20T13:30:54,652           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,652           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,652           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,652           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,652           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,653           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,653                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,653                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,653                 directory, all directories are treated like packages.
2024-03-20T13:30:54,653           ********************************************************************************

2024-03-20T13:30:54,653   !!
2024-03-20T13:30:54,654     check.warn(importable)
2024-03-20T13:30:54,654   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-03-20T13:30:54,654   !!

2024-03-20T13:30:54,654           ********************************************************************************
2024-03-20T13:30:54,654           ############################
2024-03-20T13:30:54,654           # Package would be ignored #
2024-03-20T13:30:54,655           ############################
2024-03-20T13:30:54,655           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-03-20T13:30:54,655           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,655           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,655           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-03-20T13:30:54,655           to the `packages` configuration field.

2024-03-20T13:30:54,656           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,656           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,656           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,656           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,656           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,657           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-03-20T13:30:54,657           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-03-20T13:30:54,657           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,657           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,657           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,657           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,658           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,658           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,658                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,658                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,658                 directory, all directories are treated like packages.
2024-03-20T13:30:54,658           ********************************************************************************

2024-03-20T13:30:54,659   !!
2024-03-20T13:30:54,659     check.warn(importable)
2024-03-20T13:30:54,659   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-03-20T13:30:54,659   !!

2024-03-20T13:30:54,659           ********************************************************************************
2024-03-20T13:30:54,659           ############################
2024-03-20T13:30:54,660           # Package would be ignored #
2024-03-20T13:30:54,660           ############################
2024-03-20T13:30:54,660           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-03-20T13:30:54,660           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,660           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,660           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-03-20T13:30:54,660           to the `packages` configuration field.

2024-03-20T13:30:54,661           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,661           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,661           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,661           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,661           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,661           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-03-20T13:30:54,662           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-03-20T13:30:54,662           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,662           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,662           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,662           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,662           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,663           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,663                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,663                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,663                 directory, all directories are treated like packages.
2024-03-20T13:30:54,663           ********************************************************************************

2024-03-20T13:30:54,663   !!
2024-03-20T13:30:54,664     check.warn(importable)
2024-03-20T13:30:54,664   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-03-20T13:30:54,664   !!

2024-03-20T13:30:54,664           ********************************************************************************
2024-03-20T13:30:54,664           ############################
2024-03-20T13:30:54,664           # Package would be ignored #
2024-03-20T13:30:54,664           ############################
2024-03-20T13:30:54,664           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-03-20T13:30:54,665           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,665           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,665           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-03-20T13:30:54,665           to the `packages` configuration field.

2024-03-20T13:30:54,665           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,666           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,666           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,666           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,666           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,667           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-03-20T13:30:54,667           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-03-20T13:30:54,667           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,667           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,667           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,667           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,668           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,668           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,668                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,668                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,668                 directory, all directories are treated like packages.
2024-03-20T13:30:54,669           ********************************************************************************

2024-03-20T13:30:54,669   !!
2024-03-20T13:30:54,669     check.warn(importable)
2024-03-20T13:30:54,669   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-03-20T13:30:54,669   !!

2024-03-20T13:30:54,669           ********************************************************************************
2024-03-20T13:30:54,670           ############################
2024-03-20T13:30:54,670           # Package would be ignored #
2024-03-20T13:30:54,670           ############################
2024-03-20T13:30:54,670           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-03-20T13:30:54,670           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,670           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,671           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-03-20T13:30:54,671           to the `packages` configuration field.

2024-03-20T13:30:54,671           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,671           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,671           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,671           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,672           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,672           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-03-20T13:30:54,672           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-03-20T13:30:54,672           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,672           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,672           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,673           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,673           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,673           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,673                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,674                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,674                 directory, all directories are treated like packages.
2024-03-20T13:30:54,674           ********************************************************************************

2024-03-20T13:30:54,674   !!
2024-03-20T13:30:54,674     check.warn(importable)
2024-03-20T13:30:54,674   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-03-20T13:30:54,675   !!

2024-03-20T13:30:54,675           ********************************************************************************
2024-03-20T13:30:54,675           ############################
2024-03-20T13:30:54,675           # Package would be ignored #
2024-03-20T13:30:54,675           ############################
2024-03-20T13:30:54,675           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-03-20T13:30:54,675           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,676           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,676           package, please make sure that 'moleculekit.share' is explicitly added
2024-03-20T13:30:54,676           to the `packages` configuration field.

2024-03-20T13:30:54,676           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,676           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,677           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,677           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,677           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,677           If you don't want 'moleculekit.share' to be distributed and are
2024-03-20T13:30:54,678           already explicitly excluding 'moleculekit.share' via
2024-03-20T13:30:54,678           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,678           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,678           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,678           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,678           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,679           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,679                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,679                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,679                 directory, all directories are treated like packages.
2024-03-20T13:30:54,679           ********************************************************************************

2024-03-20T13:30:54,680   !!
2024-03-20T13:30:54,680     check.warn(importable)
2024-03-20T13:30:54,680   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-03-20T13:30:54,680   !!

2024-03-20T13:30:54,680           ********************************************************************************
2024-03-20T13:30:54,680           ############################
2024-03-20T13:30:54,681           # Package would be ignored #
2024-03-20T13:30:54,681           ############################
2024-03-20T13:30:54,681           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-03-20T13:30:54,681           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,681           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,681           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-03-20T13:30:54,681           to the `packages` configuration field.

2024-03-20T13:30:54,682           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,682           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,682           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,682           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,682           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,683           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-03-20T13:30:54,683           already explicitly excluding 'moleculekit.share.atomselect' via
2024-03-20T13:30:54,683           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,683           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,683           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,683           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,684           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,684           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,684                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,684                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,684                 directory, all directories are treated like packages.
2024-03-20T13:30:54,685           ********************************************************************************

2024-03-20T13:30:54,685   !!
2024-03-20T13:30:54,685     check.warn(importable)
2024-03-20T13:30:54,685   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-03-20T13:30:54,685   !!

2024-03-20T13:30:54,685           ********************************************************************************
2024-03-20T13:30:54,686           ############################
2024-03-20T13:30:54,686           # Package would be ignored #
2024-03-20T13:30:54,686           ############################
2024-03-20T13:30:54,686           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-03-20T13:30:54,686           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,687           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,687           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-03-20T13:30:54,687           to the `packages` configuration field.

2024-03-20T13:30:54,687           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,687           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,687           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,688           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,688           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,688           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-03-20T13:30:54,688           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-03-20T13:30:54,688           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,689           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,689           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,689           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,689           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,689           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,690                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,690                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,690                 directory, all directories are treated like packages.
2024-03-20T13:30:54,690           ********************************************************************************

2024-03-20T13:30:54,690   !!
2024-03-20T13:30:54,690     check.warn(importable)
2024-03-20T13:30:54,690   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-03-20T13:30:54,691   !!

2024-03-20T13:30:54,691           ********************************************************************************
2024-03-20T13:30:54,691           ############################
2024-03-20T13:30:54,691           # Package would be ignored #
2024-03-20T13:30:54,691           ############################
2024-03-20T13:30:54,691           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-03-20T13:30:54,691           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,692           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,692           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-03-20T13:30:54,692           to the `packages` configuration field.

2024-03-20T13:30:54,692           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,692           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,692           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,693           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,693           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,693           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-03-20T13:30:54,693           already explicitly excluding 'moleculekit.tmalign' via
2024-03-20T13:30:54,693           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,693           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,694           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,694           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,694           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,694           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,695                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,695                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,695                 directory, all directories are treated like packages.
2024-03-20T13:30:54,695           ********************************************************************************

2024-03-20T13:30:54,695   !!
2024-03-20T13:30:54,695     check.warn(importable)
2024-03-20T13:30:54,695   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-03-20T13:30:54,696   !!

2024-03-20T13:30:54,696           ********************************************************************************
2024-03-20T13:30:54,696           ############################
2024-03-20T13:30:54,696           # Package would be ignored #
2024-03-20T13:30:54,696           ############################
2024-03-20T13:30:54,696           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-03-20T13:30:54,697           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,697           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,697           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-03-20T13:30:54,697           to the `packages` configuration field.

2024-03-20T13:30:54,697           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,697           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,697           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,698           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,698           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,698           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-03-20T13:30:54,698           already explicitly excluding 'moleculekit.tmalign.include' via
2024-03-20T13:30:54,698           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,699           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,699           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,699           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,699           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,699           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,700                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,700                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,700                 directory, all directories are treated like packages.
2024-03-20T13:30:54,700           ********************************************************************************

2024-03-20T13:30:54,700   !!
2024-03-20T13:30:54,700     check.warn(importable)
2024-03-20T13:30:54,700   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-03-20T13:30:54,701   !!

2024-03-20T13:30:54,701           ********************************************************************************
2024-03-20T13:30:54,701           ############################
2024-03-20T13:30:54,701           # Package would be ignored #
2024-03-20T13:30:54,701           ############################
2024-03-20T13:30:54,701           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-03-20T13:30:54,701           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,702           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,702           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-03-20T13:30:54,702           to the `packages` configuration field.

2024-03-20T13:30:54,702           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,702           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,702           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,702           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,703           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,703           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-03-20T13:30:54,703           already explicitly excluding 'moleculekit.tmalign.src' via
2024-03-20T13:30:54,703           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,703           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,703           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,704           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,704           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,705           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,705                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,705                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,705                 directory, all directories are treated like packages.
2024-03-20T13:30:54,706           ********************************************************************************

2024-03-20T13:30:54,707   !!
2024-03-20T13:30:54,707     check.warn(importable)
2024-03-20T13:30:54,707   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-03-20T13:30:54,707   !!

2024-03-20T13:30:54,708           ********************************************************************************
2024-03-20T13:30:54,708           ############################
2024-03-20T13:30:54,708           # Package would be ignored #
2024-03-20T13:30:54,709           ############################
2024-03-20T13:30:54,709           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-03-20T13:30:54,709           but it is absent from setuptools' `packages` configuration.

2024-03-20T13:30:54,709           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-20T13:30:54,710           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-03-20T13:30:54,710           to the `packages` configuration field.

2024-03-20T13:30:54,710           Alternatively, you can also rely on setuptools' discovery methods
2024-03-20T13:30:54,710           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-20T13:30:54,711           instead of `find_packages(...)`/`find:`).

2024-03-20T13:30:54,711           You can read more about "package discovery" on setuptools documentation page:

2024-03-20T13:30:54,711           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-20T13:30:54,712           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-03-20T13:30:54,712           already explicitly excluding 'moleculekit.wrapping' via
2024-03-20T13:30:54,712           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-20T13:30:54,712           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-20T13:30:54,713           combination with a more fine grained `package-data` configuration.

2024-03-20T13:30:54,713           You can read more about "package data files" on setuptools documentation page:

2024-03-20T13:30:54,713           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-20T13:30:54,714           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-20T13:30:54,714                 even if it does not contain any `.py` files.
2024-03-20T13:30:54,714                 On the other hand, currently there is no concept of package data
2024-03-20T13:30:54,714                 directory, all directories are treated like packages.
2024-03-20T13:30:54,714           ********************************************************************************

2024-03-20T13:30:54,715   !!
2024-03-20T13:30:54,715     check.warn(importable)
2024-03-20T13:30:54,715   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,715   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:54,715   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-20T13:30:54,715   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-20T13:30:54,715   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-20T13:30:54,716   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-20T13:30:54,716   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-20T13:30:54,720   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-20T13:30:54,722   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-20T13:30:54,723   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-20T13:30:54,742   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-20T13:30:54,744   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-20T13:30:54,745   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-20T13:30:54,768   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-20T13:30:54,770   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-20T13:30:54,771   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-20T13:30:54,789   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-20T13:30:54,791   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-20T13:30:54,792   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-20T13:30:54,795   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-20T13:30:54,797   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-03-20T13:30:55,010   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-03-20T13:30:55,011   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-03-20T13:30:55,014   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-03-20T13:30:55,014   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,016   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,018   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,020   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,022   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,024   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,027   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,029   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,031   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,034   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,036   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,038   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,040   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,043   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,045   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,047   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,049   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,052   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,055   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,058   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,060   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,063   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,067   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,070   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,073   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,075   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,078   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,081   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,084   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,087   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,090   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,092   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,095   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,098   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,101   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,104   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,107   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,110   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,112   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,115   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,118   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,121   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,124   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,126   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,129   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,132   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,135   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,138   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,140   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,143   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,146   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,149   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,151   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,153   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,155   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,157   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,159   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,161   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,163   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,165   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,166   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,168   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,170   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,172   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,174   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,176   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,178   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,180   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,182   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,184   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,186   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,187   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,189   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,191   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,193   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,195   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,197   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,198   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,200   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,202   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,204   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,206   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,208   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,210   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,212   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,214   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,216   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,218   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,220   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,222   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,224   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,226   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,228   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,230   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,232   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,234   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,236   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,238   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,240   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,242   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,245   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,247   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,250   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,252   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,256   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,259   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,263   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,267   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,271   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,275   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,279   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,284   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,287   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,288   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,290   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,292   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,295   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,296   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,299   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,300   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,302   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,304   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,306   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,308   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,310   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,312   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,314   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,316   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,318   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,320   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,322   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,324   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,326   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,327   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,329   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,331   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,333   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,335   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,337   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,339   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,340   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,342   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,344   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,346   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,348   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,350   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,351   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,353   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,355   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,357   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,359   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,361   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,363   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,364   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,366   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,368   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,371   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,373   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,375   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,377   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,379   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,381   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,383   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,385   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,388   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,389   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,391   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,393   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,395   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,397   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,400   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,402   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,404   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,406   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,409   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,411   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-03-20T13:30:55,413   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-20T13:30:55,414   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-20T13:30:55,433   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-20T13:30:55,435   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-20T13:30:55,437   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-03-20T13:30:55,438   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-03-20T13:30:55,440   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-20T13:30:55,441   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-20T13:30:55,448   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-20T13:30:55,449   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-20T13:30:55,479   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-20T13:30:55,482   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-20T13:30:55,483   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-20T13:30:55,502   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-20T13:30:55,505   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-20T13:30:55,506   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-20T13:30:55,533   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-20T13:30:55,536   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-20T13:30:55,536   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-20T13:30:55,556   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-20T13:30:55,558   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-20T13:30:55,559   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-20T13:30:55,580   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-20T13:30:55,582   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-20T13:30:55,583   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-20T13:30:55,597   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-20T13:30:55,600   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-20T13:30:55,602   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-20T13:30:55,603   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-20T13:30:55,605   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-20T13:30:55,608   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-03-20T13:30:55,611   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-20T13:30:55,612   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-20T13:30:55,615   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-20T13:30:55,616   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-20T13:30:55,638   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-20T13:30:55,641   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-20T13:30:55,643   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-20T13:30:55,644   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-20T13:30:55,647   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-20T13:30:55,650   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-20T13:30:55,654   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-20T13:30:55,656   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-03-20T13:30:55,661   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-20T13:30:55,662   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-20T13:30:55,667   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,669   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,696   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,699   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,701   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,703   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,726   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,728   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:30:55,730   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,731   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,734   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,736   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,741   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,744   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,746   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-03-20T13:30:55,749   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:30:55,750   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:30:55,752   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:30:55,755   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:30:55,758   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:30:55,761   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:30:55,774   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-03-20T13:30:55,775   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.27'
2024-03-20T13:30:55,775   running build_ext
2024-03-20T13:30:55,786   building 'moleculekit.interactions.hbonds' extension
2024-03-20T13:30:55,787   creating build/temp.linux-armv7l-cpython-39
2024-03-20T13:30:55,788   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-03-20T13:30:55,789   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-03-20T13:30:55,790   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-03-20T13:30:55,791   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-03-20T13:30:56,147   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:30:56,147                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:30:56,147                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:30:56,148                    from moleculekit/interactions/hbonds/hbonds.cpp:1235:
2024-03-20T13:30:56,148   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:30:56,148      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:30:56,148         |  ^~~~~~~
2024-03-20T13:31:19,182   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-20T13:31:19,182   moleculekit/interactions/hbonds/hbonds.cpp:20989:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:31:19,182   20989 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-03-20T13:31:19,183         |                                                    ^~~~~~~~~~~~~~~
2024-03-20T13:31:19,183   moleculekit/interactions/hbonds/hbonds.cpp:20002:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-03-20T13:31:19,183   20002 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-03-20T13:31:19,183         |                                                         ^~~~~~~~~~~~~~~
2024-03-20T13:31:22,298   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:31:22,615   building 'moleculekit.interactions.pipi' extension
2024-03-20T13:31:22,616   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-03-20T13:31:22,617   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-03-20T13:31:22,851   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:31:22,852                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:31:22,852                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:31:22,852                    from moleculekit/interactions/pipi/pipi.cpp:1235:
2024-03-20T13:31:22,852   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:31:22,852      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:31:22,852         |  ^~~~~~~
2024-03-20T13:31:50,962   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:31:51,279   building 'moleculekit.interactions.cationpi' extension
2024-03-20T13:31:51,280   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-03-20T13:31:51,281   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-03-20T13:31:51,513   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:31:51,513                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:31:51,514                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:31:51,514                    from moleculekit/interactions/cationpi/cationpi.cpp:1235:
2024-03-20T13:31:51,514   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:31:51,514      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:31:51,514         |  ^~~~~~~
2024-03-20T13:32:19,455   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:32:19,793   building 'moleculekit.interactions.sigmahole' extension
2024-03-20T13:32:19,794   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-03-20T13:32:19,795   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-03-20T13:32:20,026   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:32:20,026                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:32:20,026                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:32:20,027                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1235:
2024-03-20T13:32:20,027   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:32:20,027      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:32:20,027         |  ^~~~~~~
2024-03-20T13:32:47,364   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:32:47,690   building 'moleculekit.wrapping' extension
2024-03-20T13:32:47,691   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-03-20T13:32:47,692   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-03-20T13:32:47,924   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:32:47,925                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:32:47,925                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:32:47,925                    from moleculekit/wrapping/wrapping.cpp:1235:
2024-03-20T13:32:47,925   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:32:47,925      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:32:47,925         |  ^~~~~~~
2024-03-20T13:33:13,796   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:33:14,011   building 'moleculekit.bondguesser_utils' extension
2024-03-20T13:33:14,011   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-03-20T13:33:14,012   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-03-20T13:33:14,242   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:33:14,242                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:33:14,243                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:33:14,243                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1235:
2024-03-20T13:33:14,243   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:33:14,243      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:33:14,243         |  ^~~~~~~
2024-03-20T13:33:15,783   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-03-20T13:33:15,784   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-20T13:33:15,784   19771 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-20T13:33:15,784         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-20T13:33:15,784   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-20T13:33:15,784   19783 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-20T13:33:15,784         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-20T13:33:15,785   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-20T13:33:15,785   19795 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-03-20T13:33:15,785         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-03-20T13:33:15,785   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19834:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,785   19834 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-20T13:33:15,785         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,785   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19873:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,786   19873 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-20T13:33:15,786         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,786   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19912:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,786   19912 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,786         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,786   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,787   19951 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-20T13:33:15,787         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,787   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19957:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,787   19957 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-20T13:33:15,787         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,787   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19998:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,787   19998 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-20T13:33:15,788         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,788   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20004:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,788   20004 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,788         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,788   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20045:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,788   20045 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-20T13:33:15,788         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,789   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20051:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,789   20051 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,789         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,789   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20092:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,789   20092 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-20T13:33:15,789         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,789   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20145:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,790   20145 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,790         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,790   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20192:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,790   20192 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,790         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,790   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,790   20233 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-20T13:33:15,791         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,791   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20239:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,791   20239 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-20T13:33:15,791         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,791   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,791   20245 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,791         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,792   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20292:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,792   20292 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-20T13:33:15,792         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,792   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20298:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,792   20298 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,792         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,792   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,793   20339 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-20T13:33:15,793         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,793   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,793   20351 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,793         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,793   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20404:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-20T13:33:15,793   20404 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-20T13:33:15,793         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,812   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-03-20T13:33:15,812   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21026:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:33:15,812   21026 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-03-20T13:33:15,813         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-03-20T13:33:15,813   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21063:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:33:15,813   21063 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-03-20T13:33:15,813         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-20T13:33:38,811   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:33:39,115   building 'moleculekit.atomselect_utils' extension
2024-03-20T13:33:39,116   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-03-20T13:33:39,116   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-03-20T13:33:39,351   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:33:39,351                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:33:39,351                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:33:39,351                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1252:
2024-03-20T13:33:39,351   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:33:39,352      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:33:39,352         |  ^~~~~~~
2024-03-20T13:33:41,068   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-03-20T13:33:41,068   moleculekit/atomselect_utils/atomselect_utils.cpp:23225:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:33:41,068   23225 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-03-20T13:33:41,068         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-20T13:33:41,073   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-20T13:33:41,073   moleculekit/atomselect_utils/atomselect_utils.cpp:23477:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:33:41,073   23477 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-20T13:33:41,074         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-20T13:33:41,078   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-20T13:33:41,079   moleculekit/atomselect_utils/atomselect_utils.cpp:23744:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:33:41,079   23744 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-20T13:33:41,079         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-20T13:34:11,204   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:34:11,539   building 'moleculekit.distance_utils' extension
2024-03-20T13:34:11,539   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-03-20T13:34:11,540   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-03-20T13:34:11,771   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:34:11,771                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:34:11,771                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:34:11,771                    from moleculekit/distance_utils/distance_utils.cpp:1235:
2024-03-20T13:34:11,771   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:34:11,771      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:34:11,772         |  ^~~~~~~
2024-03-20T13:34:13,433   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-03-20T13:34:13,434   moleculekit/distance_utils/distance_utils.cpp:21329:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:34:13,434   21329 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-20T13:34:13,434         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-20T13:34:13,434   moleculekit/distance_utils/distance_utils.cpp:21341:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-20T13:34:13,434   21341 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-20T13:34:13,435         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-20T13:34:46,441   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:34:46,781   building 'moleculekit.occupancy_utils' extension
2024-03-20T13:34:46,782   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-03-20T13:34:46,783   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-03-20T13:34:47,045   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:34:47,046                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:34:47,046                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:34:47,046                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1235:
2024-03-20T13:34:47,046   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:34:47,046      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:34:47,046         |  ^~~~~~~
2024-03-20T13:35:10,047   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:35:10,255   building 'moleculekit.cython_utils' extension
2024-03-20T13:35:10,256   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-03-20T13:35:10,257   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-03-20T13:35:10,487   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:35:10,488                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:35:10,488                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:35:10,488                    from moleculekit/cython_utils/cython_utils.cpp:1235:
2024-03-20T13:35:10,488   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:35:10,488      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:35:10,488         |  ^~~~~~~
2024-03-20T13:35:35,845   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:35:36,158   building 'moleculekit.xtc' extension
2024-03-20T13:35:36,159   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-03-20T13:35:36,160   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-03-20T13:35:36,160   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-03-20T13:35:36,162   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-20T13:35:36,398   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,398      66 |  "OK",
2024-03-20T13:35:36,398         |  ^~~~
2024-03-20T13:35:36,399   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,399      67 |  "Header",
2024-03-20T13:35:36,399         |  ^~~~~~~~
2024-03-20T13:35:36,399   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,399      68 |  "String",
2024-03-20T13:35:36,400         |  ^~~~~~~~
2024-03-20T13:35:36,400   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,400      69 |  "Double",
2024-03-20T13:35:36,400         |  ^~~~~~~~
2024-03-20T13:35:36,400   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,400      70 |  "Integer",
2024-03-20T13:35:36,401         |  ^~~~~~~~~
2024-03-20T13:35:36,401   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,401      71 |  "Float",
2024-03-20T13:35:36,401         |  ^~~~~~~
2024-03-20T13:35:36,401   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,401      72 |  "Unsigned integer",
2024-03-20T13:35:36,402         |  ^~~~~~~~~~~~~~~~~~
2024-03-20T13:35:36,402   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,402      73 |  "Compressed 3D coordinate",
2024-03-20T13:35:36,402         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:35:36,402   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,402      74 |  "Closing file",
2024-03-20T13:35:36,403         |  ^~~~~~~~~~~~~~
2024-03-20T13:35:36,403   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,403      75 |  "Magic number",
2024-03-20T13:35:36,403         |  ^~~~~~~~~~~~~~
2024-03-20T13:35:36,403   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,404      76 |  "Not enough memory",
2024-03-20T13:35:36,404         |  ^~~~~~~~~~~~~~~~~~~
2024-03-20T13:35:36,404   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,405      77 |  "End of file",
2024-03-20T13:35:36,405         |  ^~~~~~~~~~~~~
2024-03-20T13:35:36,405   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:35:36,405      78 |  "File not found"
2024-03-20T13:35:36,406         |  ^~~~~~~~~~~~~~~~
2024-03-20T13:35:36,408   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-20T13:35:36,408   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,409     459 |     while (size >= num && num_of_bits < 32)
2024-03-20T13:35:36,409         |            ~~~~~^~~~~~
2024-03-20T13:35:36,409   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-20T13:35:36,409   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,409     505 |     while (bytes[num_of_bytes] >= num)
2024-03-20T13:35:36,409         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-20T13:35:36,411   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-20T13:35:36,411   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,411     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-20T13:35:36,412         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-20T13:35:36,412   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,412     616 |   for (i = 0; i < num_of_bytes; i++)
2024-03-20T13:35:36,412         |               ~~^~~~~~~~~~~~~~
2024-03-20T13:35:36,412   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,412     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-03-20T13:35:36,412         |               ~~^~~~~~~~~~~~~~~~
2024-03-20T13:35:36,413   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-20T13:35:36,413   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,413     664 |   if (lastbits < num_of_bits)
2024-03-20T13:35:36,413         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-03-20T13:35:36,416   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-20T13:35:36,416   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,417     785 |  if(size3>xfp->buf1size)
2024-03-20T13:35:36,417         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:35:36,418   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,418     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:35:36,418         |                   ^
2024-03-20T13:35:36,421   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,421     932 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:35:36,421         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:35:36,421   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,421     935 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:35:36,422         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:35:36,422   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,422     938 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:35:36,422         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:35:36,422   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,422     945 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:35:36,422         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:35:36,423   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,423     948 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:35:36,423         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:35:36,423   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,423     951 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:35:36,423         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:35:36,423   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:35:36,423     756 |  int smallidx,  minidx, maxidx;
2024-03-20T13:35:36,424         |                 ^~~~~~
2024-03-20T13:35:36,424   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:35:36,424     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-20T13:35:36,424         |                         ^~~~~~
2024-03-20T13:35:36,424   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-20T13:35:36,424     763 |  int errval=1;
2024-03-20T13:35:36,424         |      ^~~~~~
2024-03-20T13:35:36,425   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-20T13:35:36,425   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,425    1011 |  if(size3>xfp->buf1size)
2024-03-20T13:35:36,426         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:35:36,427   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,427    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-03-20T13:35:36,428         |                     ~~~~~~~~^~~~~~~
2024-03-20T13:35:36,428   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,428    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-20T13:35:36,428         |                    ~~~~~~~~^~~~~~~
2024-03-20T13:35:36,428   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,429    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-20T13:35:36,429         |                    ~~~~~~~~^~~~~~~
2024-03-20T13:35:36,430   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,430    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-20T13:35:36,430         |                  ^
2024-03-20T13:35:36,431   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,431    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:35:36,431         |                   ^
2024-03-20T13:35:36,434   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,434    1275 |  if(tmp==(unsigned int)buf2[0])
2024-03-20T13:35:36,435         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:35:36,435   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:35:36,435    1001 |  int errval;
2024-03-20T13:35:36,435         |      ^~~~~~
2024-03-20T13:35:36,437   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-20T13:35:36,438   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,438    1316 |  if(size3>xfp->buf1size)
2024-03-20T13:35:36,438         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:35:36,440   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,440    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:35:36,440         |                   ^
2024-03-20T13:35:36,442   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:35:36,443    1289 |  int smallidx,  maxidx, minidx;
2024-03-20T13:35:36,443         |                         ^~~~~~
2024-03-20T13:35:36,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:35:36,443    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-20T13:35:36,443         |                         ^~~~~~
2024-03-20T13:35:36,443   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-20T13:35:36,444    1297 |  int errval=1;
2024-03-20T13:35:36,444         |      ^~~~~~
2024-03-20T13:35:36,445   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-20T13:35:36,445   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,445    1513 |  if(size3>xfp->buf1size) {
2024-03-20T13:35:36,445         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:35:36,449   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,450    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-20T13:35:36,450         |                  ^
2024-03-20T13:35:36,450   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:36,450    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:35:36,450         |                   ^
2024-03-20T13:35:36,453   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:35:36,454    1743 |  if(tmp==(unsigned int)buf2[0])
2024-03-20T13:35:36,454         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:35:36,454   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:35:36,454    1504 |  int errval=1;
2024-03-20T13:35:36,454         |      ^~~~~~
2024-03-20T13:35:38,676   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-03-20T13:35:38,935   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-03-20T13:35:39,503   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-03-20T13:35:39,503   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:39,504     238 |   for (aidx = 0; aidx < natoms; aidx++)
2024-03-20T13:35:39,504         |                  ~~~~~^~~~~~~~
2024-03-20T13:35:39,504   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-20T13:35:39,504     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2024-03-20T13:35:39,504         |      ^~~
2024-03-20T13:35:39,511   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-03-20T13:35:39,511   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2024-03-20T13:35:39,511     418 |  int nf3 = nframes * 3;
2024-03-20T13:35:39,511         |      ^~~
2024-03-20T13:35:39,513   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-03-20T13:35:39,513   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:39,513     548 |    for (aidx = 0; aidx < natoms; aidx++)
2024-03-20T13:35:39,514         |                   ~~~~~^~~~~~~~
2024-03-20T13:35:39,515   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:35:39,516     617 |    for (aidx = 0; aidx < natoms; aidx++)
2024-03-20T13:35:39,516         |                   ~~~~~^~~~~~~~
2024-03-20T13:35:39,516   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2024-03-20T13:35:39,516     491 |  int reading_index = 0;
2024-03-20T13:35:39,516         |      ^~~~~~~~~~~~~
2024-03-20T13:35:39,517   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2024-03-20T13:35:39,517     492 |  int writing_index = 0;
2024-03-20T13:35:39,517         |      ^~~~~~~~~~~~~
2024-03-20T13:35:40,284   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-03-20T13:35:40,528   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:35:40,528                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:35:40,528                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:35:40,528                    from moleculekit/fileformats/xtc/xtc.cpp:1239:
2024-03-20T13:35:40,528   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:35:40,529      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:35:40,529         |  ^~~~~~~
2024-03-20T13:36:00,570   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:36:00,881   building 'moleculekit.trr' extension
2024-03-20T13:36:00,883   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-03-20T13:36:01,026   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-20T13:36:01,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,255      66 |  "OK",
2024-03-20T13:36:01,255         |  ^~~~
2024-03-20T13:36:01,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,255      67 |  "Header",
2024-03-20T13:36:01,256         |  ^~~~~~~~
2024-03-20T13:36:01,256   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,256      68 |  "String",
2024-03-20T13:36:01,256         |  ^~~~~~~~
2024-03-20T13:36:01,256   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,256      69 |  "Double",
2024-03-20T13:36:01,257         |  ^~~~~~~~
2024-03-20T13:36:01,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,257      70 |  "Integer",
2024-03-20T13:36:01,257         |  ^~~~~~~~~
2024-03-20T13:36:01,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,257      71 |  "Float",
2024-03-20T13:36:01,257         |  ^~~~~~~
2024-03-20T13:36:01,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,258      72 |  "Unsigned integer",
2024-03-20T13:36:01,258         |  ^~~~~~~~~~~~~~~~~~
2024-03-20T13:36:01,258   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,258      73 |  "Compressed 3D coordinate",
2024-03-20T13:36:01,258         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:01,258   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,258      74 |  "Closing file",
2024-03-20T13:36:01,259         |  ^~~~~~~~~~~~~~
2024-03-20T13:36:01,259   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,259      75 |  "Magic number",
2024-03-20T13:36:01,259         |  ^~~~~~~~~~~~~~
2024-03-20T13:36:01,259   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,259      76 |  "Not enough memory",
2024-03-20T13:36:01,259         |  ^~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:01,260   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,260      77 |  "End of file",
2024-03-20T13:36:01,260         |  ^~~~~~~~~~~~~
2024-03-20T13:36:01,260   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-20T13:36:01,260      78 |  "File not found"
2024-03-20T13:36:01,260         |  ^~~~~~~~~~~~~~~~
2024-03-20T13:36:01,264   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-20T13:36:01,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,264     459 |     while (size >= num && num_of_bits < 32)
2024-03-20T13:36:01,265         |            ~~~~~^~~~~~
2024-03-20T13:36:01,265   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-20T13:36:01,265   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,265     505 |     while (bytes[num_of_bytes] >= num)
2024-03-20T13:36:01,265         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-20T13:36:01,267   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-20T13:36:01,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,268     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-20T13:36:01,268         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:01,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,268     616 |   for (i = 0; i < num_of_bytes; i++)
2024-03-20T13:36:01,268         |               ~~^~~~~~~~~~~~~~
2024-03-20T13:36:01,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,269     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-03-20T13:36:01,269         |               ~~^~~~~~~~~~~~~~~~
2024-03-20T13:36:01,269   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-20T13:36:01,269   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,269     664 |   if (lastbits < num_of_bits)
2024-03-20T13:36:01,269         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-03-20T13:36:01,272   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-20T13:36:01,273   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,273     785 |  if(size3>xfp->buf1size)
2024-03-20T13:36:01,273         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:36:01,274   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,275     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:36:01,275         |                   ^
2024-03-20T13:36:01,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,277     932 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:36:01,277         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:36:01,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,278     935 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:36:01,278         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:36:01,278   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,278     938 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:36:01,278         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:36:01,278   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,278     945 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:36:01,279         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:36:01,279   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,279     948 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:36:01,279         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:36:01,279   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,279     951 |     if(countmjh >= size3 ) { return -1; }
2024-03-20T13:36:01,279         |        ~~~~~~~~~^~~~~~~~
2024-03-20T13:36:01,279   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:36:01,280     756 |  int smallidx,  minidx, maxidx;
2024-03-20T13:36:01,280         |                 ^~~~~~
2024-03-20T13:36:01,280   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:36:01,280     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-20T13:36:01,280         |                         ^~~~~~
2024-03-20T13:36:01,280   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-20T13:36:01,280     763 |  int errval=1;
2024-03-20T13:36:01,280         |      ^~~~~~
2024-03-20T13:36:01,281   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-20T13:36:01,281   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,282    1011 |  if(size3>xfp->buf1size)
2024-03-20T13:36:01,282         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:36:01,283   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,284    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-03-20T13:36:01,284         |                     ~~~~~~~~^~~~~~~
2024-03-20T13:36:01,284   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,284    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-20T13:36:01,284         |                    ~~~~~~~~^~~~~~~
2024-03-20T13:36:01,285   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,285    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-03-20T13:36:01,285         |                    ~~~~~~~~^~~~~~~
2024-03-20T13:36:01,286   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,286    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-20T13:36:01,287         |                  ^
2024-03-20T13:36:01,287   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,287    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:36:01,287         |                   ^
2024-03-20T13:36:01,290   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,291    1275 |  if(tmp==(unsigned int)buf2[0])
2024-03-20T13:36:01,291         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:01,291   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:36:01,291    1001 |  int errval;
2024-03-20T13:36:01,291         |      ^~~~~~
2024-03-20T13:36:01,294   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-20T13:36:01,294   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,294    1316 |  if(size3>xfp->buf1size)
2024-03-20T13:36:01,294         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:36:01,296   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,296    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:36:01,296         |                   ^
2024-03-20T13:36:01,298   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:36:01,299    1289 |  int smallidx,  maxidx, minidx;
2024-03-20T13:36:01,299         |                         ^~~~~~
2024-03-20T13:36:01,299   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:36:01,299    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-03-20T13:36:01,299         |                         ^~~~~~
2024-03-20T13:36:01,299   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-20T13:36:01,299    1297 |  int errval=1;
2024-03-20T13:36:01,300         |      ^~~~~~
2024-03-20T13:36:01,301   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-20T13:36:01,301   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,301    1513 |  if(size3>xfp->buf1size) {
2024-03-20T13:36:01,301         |     ~~~~~^~~~~~~~~~~~~~
2024-03-20T13:36:01,305   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,305    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-20T13:36:01,305         |                  ^
2024-03-20T13:36:01,306   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:01,306    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-20T13:36:01,306         |                   ^
2024-03-20T13:36:01,309   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:01,309    1743 |  if(tmp==(unsigned int)buf2[0])
2024-03-20T13:36:01,310         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:01,310   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-20T13:36:01,310    1504 |  int errval=1;
2024-03-20T13:36:01,310         |      ^~~~~~
2024-03-20T13:36:03,531   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-03-20T13:36:03,622   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-03-20T13:36:03,622   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-20T13:36:03,622     111 |         if (slen != strlen(version)+1)
2024-03-20T13:36:03,623         |                  ^~
2024-03-20T13:36:03,623   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-20T13:36:03,623     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-03-20T13:36:03,623         |                                              ^~
2024-03-20T13:36:04,205   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-03-20T13:36:04,525   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:36:04,525                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:36:04,525                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:36:04,525                    from moleculekit/fileformats/xtc/trr.c:1231:
2024-03-20T13:36:04,526   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:36:04,526      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:36:04,526         |  ^~~~~~~
2024-03-20T13:36:05,146   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-03-20T13:36:05,155   moleculekit/fileformats/xtc/trr.c:16322:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-20T13:36:05,155   16322 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-03-20T13:36:05,155         |                                     ^~
2024-03-20T13:36:25,372   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-03-20T13:36:25,373   moleculekit/fileformats/xtc/trr.c:1133:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:25,373    1133 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-20T13:36:25,373         |                                        ^~~~~~~~~~~~~~~
2024-03-20T13:36:25,382   moleculekit/fileformats/xtc/trr.c:14230:7: note: ‘__pyx_v_status’ was declared here
2024-03-20T13:36:25,382   14230 |   int __pyx_v_status;
2024-03-20T13:36:25,382         |       ^~~~~~~~~~~~~~
2024-03-20T13:36:35,689   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-03-20T13:36:35,696   moleculekit/fileformats/xtc/trr.c:11529:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,696   11529 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-20T13:36:35,696         |                   ^
2024-03-20T13:36:35,703   moleculekit/fileformats/xtc/trr.c:11525:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,704   11525 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-20T13:36:35,704         |                   ^
2024-03-20T13:36:35,705   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,705    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-20T13:36:35,705         |                                                                                               ^
2024-03-20T13:36:35,710   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-03-20T13:36:35,710   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-20T13:36:35,711         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:35,716   moleculekit/fileformats/xtc/trr.c:11519:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,717   11519 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-03-20T13:36:35,717         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-20T13:36:35,723   moleculekit/fileformats/xtc/trr.c:11472:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,723   11472 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-20T13:36:35,724         |                   ^
2024-03-20T13:36:35,730   moleculekit/fileformats/xtc/trr.c:11468:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,730   11468 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-20T13:36:35,731         |                   ^
2024-03-20T13:36:35,731   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,731    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-20T13:36:35,732         |                                                                                               ^
2024-03-20T13:36:35,737   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-03-20T13:36:35,737   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-20T13:36:35,737         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-20T13:36:35,743   moleculekit/fileformats/xtc/trr.c:11462:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,743   11462 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-03-20T13:36:35,743         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-20T13:36:35,749   moleculekit/fileformats/xtc/trr.c:11861:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,749   11861 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-20T13:36:35,749         |                 ^
2024-03-20T13:36:35,756   moleculekit/fileformats/xtc/trr.c:11857:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,756   11857 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-20T13:36:35,756         |                 ^
2024-03-20T13:36:35,763   moleculekit/fileformats/xtc/trr.c:11702:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,763   11702 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-20T13:36:35,763         |                   ^
2024-03-20T13:36:35,770   moleculekit/fileformats/xtc/trr.c:11698:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,770   11698 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-20T13:36:35,770         |                   ^
2024-03-20T13:36:35,776   moleculekit/fileformats/xtc/trr.c:11754:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,776   11754 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-20T13:36:35,776         |                   ^
2024-03-20T13:36:35,783   moleculekit/fileformats/xtc/trr.c:11750:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:35,783   11750 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-20T13:36:35,784         |                   ^
2024-03-20T13:36:42,253   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:36:42,434   building 'moleculekit.dcd' extension
2024-03-20T13:36:42,435   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-03-20T13:36:42,436   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-03-20T13:36:42,438   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-03-20T13:36:42,788   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:36:42,788                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:36:42,788                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:36:42,789                    from moleculekit/fileformats/dcd/dcd.c:1226:
2024-03-20T13:36:42,789   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:36:42,789      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:36:42,789         |  ^~~~~~~
2024-03-20T13:36:43,808   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-03-20T13:36:43,808                    from moleculekit/fileformats/dcd/dcd.c:1232:
2024-03-20T13:36:43,808   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,808     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-20T13:36:43,808         |            ^~~~~~~~~~~~~
2024-03-20T13:36:43,809   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,809     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-20T13:36:43,809         |            ^~~~~~~~~~~~~~
2024-03-20T13:36:43,809   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,809     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-03-20T13:36:43,809         |            ^~~~~~~~~~~~~~~
2024-03-20T13:36:43,810   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,810     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-03-20T13:36:43,810         |                   ^~~~~~~~~
2024-03-20T13:36:43,810   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,810     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-03-20T13:36:43,810         |                   ^~~~~~~~~
2024-03-20T13:36:43,810   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,810     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-03-20T13:36:43,811         |                   ^~~~~~~~~
2024-03-20T13:36:43,811   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,811     394 | static int fio_fclose(fio_fd fd) {
2024-03-20T13:36:43,811         |            ^~~~~~~~~~
2024-03-20T13:36:43,811   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-03-20T13:36:43,811     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-03-20T13:36:43,811         |            ^~~~~~~~
2024-03-20T13:36:56,470   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-03-20T13:36:56,470   moleculekit/fileformats/dcd/dcd.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:36:56,471    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-20T13:36:56,471         |                                        ^~~~~~~~~~~~~~~
2024-03-20T13:36:56,475   moleculekit/fileformats/dcd/dcd.c:7992:7: note: ‘__pyx_v_i’ was declared here
2024-03-20T13:36:56,475    7992 |   int __pyx_v_i;
2024-03-20T13:36:56,475         |       ^~~~~~~~~
2024-03-20T13:36:59,685   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-03-20T13:36:59,867   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-03-20T13:36:59,868   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:59,868     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-20T13:36:59,868         |                                                       ^~
2024-03-20T13:36:59,869   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:59,869     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-20T13:36:59,869         |                                                      ^~
2024-03-20T13:36:59,869   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:59,869     194 |     if (input_integer[0] != dcdcordmagic)
2024-03-20T13:36:59,869         |                          ^~
2024-03-20T13:36:59,872   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:59,872     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-20T13:36:59,873         |                                               ^~
2024-03-20T13:36:59,873   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-20T13:36:59,873     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-20T13:36:59,873         |                                               ^~
2024-03-20T13:36:59,877   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-03-20T13:36:59,877   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:59,877     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-03-20T13:36:59,877         |                       ^~
2024-03-20T13:36:59,877   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-20T13:36:59,878     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-03-20T13:36:59,878         |                                                 ^~
2024-03-20T13:36:59,900   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-03-20T13:36:59,900   At top level:
2024-03-20T13:36:59,901   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-03-20T13:36:59,901      96 | static void swap2_aligned(void *v, long ndata) {
2024-03-20T13:36:59,901         |             ^~~~~~~~~~~~~
2024-03-20T13:36:59,901   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-03-20T13:36:59,901      32 | static void swap2_unaligned(void *v, long ndata) {
2024-03-20T13:36:59,901         |             ^~~~~~~~~~~~~~~
2024-03-20T13:36:59,901   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-03-20T13:36:59,902   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-20T13:36:59,902     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-20T13:36:59,902         |            ^~~~~~~~~~~~~
2024-03-20T13:36:59,902   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-20T13:36:59,902     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-20T13:36:59,902         |            ^~~~~~~~~~~~~~
2024-03-20T13:37:01,009   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:37:01,148   building 'moleculekit.binpos' extension
2024-03-20T13:37:01,149   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-03-20T13:37:01,150   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-03-20T13:37:01,151   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-03-20T13:37:01,479   In file included from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-20T13:37:01,480                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-20T13:37:01,480                    from /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-20T13:37:01,480                    from moleculekit/fileformats/binpos/binpos.c:1226:
2024-03-20T13:37:01,480   /tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-20T13:37:01,480      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-20T13:37:01,480         |  ^~~~~~~
2024-03-20T13:37:14,945   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-03-20T13:37:14,950   moleculekit/fileformats/binpos/binpos.c:8015:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:37:14,950    8015 |   if (__pyx_t_1) {
2024-03-20T13:37:14,950         |      ^
2024-03-20T13:37:14,954   moleculekit/fileformats/binpos/binpos.c:7492:7: note: ‘__pyx_v_status’ was declared here
2024-03-20T13:37:14,954    7492 |   int __pyx_v_status;
2024-03-20T13:37:14,954         |       ^~~~~~~~~~~~~~
2024-03-20T13:37:14,955   moleculekit/fileformats/binpos/binpos.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-03-20T13:37:14,955    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-20T13:37:14,955         |                                        ^~~~~~~~~~~~~~~
2024-03-20T13:37:14,959   moleculekit/fileformats/binpos/binpos.c:7489:7: note: ‘__pyx_v_i’ was declared here
2024-03-20T13:37:14,959    7489 |   int __pyx_v_i;
2024-03-20T13:37:14,959         |       ^~~~~~~~~
2024-03-20T13:37:17,172   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-03-20T13:37:17,478   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:37:17,614   building 'moleculekit.tmalign' extension
2024-03-20T13:37:17,614   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-03-20T13:37:17,615   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-03-20T13:37:17,616   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-03-20T13:37:46,946   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-8jerv7_0/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-03-20T13:38:05,344   In file included from /usr/include/c++/10/vector:72,
2024-03-20T13:38:05,344                    from moleculekit/tmalign/tmalign_util.cpp:1250:
2024-03-20T13:38:05,345   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-03-20T13:38:05,345   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-03-20T13:38:05,345     426 |       vector<_Tp, _Alloc>::
2024-03-20T13:38:05,345         |       ^~~~~~~~~~~~~~~~~~~
2024-03-20T13:38:05,920   In file included from /usr/include/c++/10/vector:67,
2024-03-20T13:38:05,920                    from moleculekit/tmalign/tmalign_util.cpp:1250:
2024-03-20T13:38:05,920   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-20T13:38:05,920   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-20T13:38:05,921    1198 |    _M_realloc_insert(end(), __x);
2024-03-20T13:38:05,921         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-20T13:38:05,921   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-20T13:38:05,921    1198 |    _M_realloc_insert(end(), __x);
2024-03-20T13:38:05,921         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-20T13:38:05,922   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-20T13:38:05,922    1198 |    _M_realloc_insert(end(), __x);
2024-03-20T13:38:05,922         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-20T13:38:08,325   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-03-20T13:38:08,804   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-03-20T13:38:08,804   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.27'
2024-03-20T13:38:08,804   installing to build/bdist.linux-armv7l/wheel
2024-03-20T13:38:08,804   running install
2024-03-20T13:38:08,831   running install_lib
2024-03-20T13:38:08,838   creating build/bdist.linux-armv7l
2024-03-20T13:38:08,839   creating build/bdist.linux-armv7l/wheel
2024-03-20T13:38:08,841   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:08,843   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-20T13:38:08,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:08,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:08,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:08,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:08,891   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-20T13:38:08,893   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-03-20T13:38:08,897   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:08,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,040   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,044   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-20T13:38:09,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-20T13:38:09,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-20T13:38:09,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-20T13:38:09,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-20T13:38:09,259   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-20T13:38:09,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-20T13:38:09,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-20T13:38:09,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-20T13:38:09,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,479   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-20T13:38:09,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-20T13:38:09,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-20T13:38:09,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-20T13:38:09,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,490   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-20T13:38:09,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-20T13:38:09,493   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-20T13:38:09,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-20T13:38:09,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-20T13:38:09,520   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-20T13:38:09,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-20T13:38:09,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-20T13:38:09,529   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,556   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-20T13:38:09,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-20T13:38:09,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-20T13:38:09,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,634   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-20T13:38:09,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-20T13:38:09,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-20T13:38:09,666   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-20T13:38:09,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-20T13:38:09,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-20T13:38:09,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-20T13:38:09,717   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-20T13:38:09,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-20T13:38:09,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-20T13:38:09,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,744   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-20T13:38:09,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-20T13:38:09,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-20T13:38:09,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,844   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-20T13:38:09,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-20T13:38:09,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-20T13:38:09,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-20T13:38:09,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-20T13:38:09,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,923   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-20T13:38:09,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-20T13:38:09,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-20T13:38:09,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:09,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,005   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,018   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-20T13:38:10,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-20T13:38:10,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-20T13:38:10,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-20T13:38:10,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-20T13:38:10,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-20T13:38:10,030   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-20T13:38:10,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-20T13:38:10,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-20T13:38:10,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,075   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-20T13:38:10,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-20T13:38:10,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-20T13:38:10,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,131   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-20T13:38:10,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-20T13:38:10,134   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,138   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-20T13:38:10,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,154   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-20T13:38:10,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-20T13:38:10,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-20T13:38:10,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-20T13:38:10,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-20T13:38:10,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-20T13:38:10,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-20T13:38:10,213   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-20T13:38:10,214   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-20T13:38:10,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-20T13:38:10,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-20T13:38:10,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-20T13:38:10,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-20T13:38:10,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-20T13:38:10,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-20T13:38:10,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-20T13:38:10,230   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-20T13:38:10,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-20T13:38:10,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-20T13:38:10,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-20T13:38:10,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-20T13:38:10,253   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-20T13:38:10,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-20T13:38:10,271   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-20T13:38:10,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-20T13:38:10,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-20T13:38:10,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-20T13:38:10,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-20T13:38:10,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-20T13:38:10,282   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-20T13:38:10,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-20T13:38:10,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,290   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,320   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-20T13:38:10,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-20T13:38:10,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-20T13:38:10,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-20T13:38:10,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,361   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-20T13:38:10,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-20T13:38:10,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-20T13:38:10,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,388   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-20T13:38:10,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-20T13:38:10,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-20T13:38:10,412   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-20T13:38:10,414   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-20T13:38:10,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-20T13:38:10,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-20T13:38:10,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-20T13:38:10,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-20T13:38:10,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-20T13:38:10,426   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-20T13:38:10,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-20T13:38:10,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-20T13:38:10,432   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-20T13:38:10,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-20T13:38:10,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-20T13:38:10,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-20T13:38:10,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-20T13:38:10,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-20T13:38:10,494   running install_egg_info
2024-03-20T13:38:10,500   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.27-py3.9.egg-info
2024-03-20T13:38:10,513   running install_scripts
2024-03-20T13:38:10,561   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.27.dist-info/WHEEL
2024-03-20T13:38:10,564   creating '/tmp/pip-wheel-0_75ss_k/.tmp-nqpun01z/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-20T13:38:10,567   adding 'moleculekit/__init__.py'
2024-03-20T13:38:10,568   adding 'moleculekit/_version.py'
2024-03-20T13:38:10,570   adding 'moleculekit/align.py'
2024-03-20T13:38:10,880   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:11,041   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:11,047   adding 'moleculekit/bondguesser.py'
2024-03-20T13:38:11,288   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:11,297   adding 'moleculekit/config.py'
2024-03-20T13:38:11,553   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:11,724   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:11,730   adding 'moleculekit/dihedral.py'
2024-03-20T13:38:11,732   adding 'moleculekit/distance.py'
2024-03-20T13:38:12,060   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:12,072   adding 'moleculekit/home.py'
2024-03-20T13:38:12,073   adding 'moleculekit/logging.ini'
2024-03-20T13:38:12,087   adding 'moleculekit/molecule.py'
2024-03-20T13:38:12,312   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:12,321   adding 'moleculekit/opm.py'
2024-03-20T13:38:12,323   adding 'moleculekit/periodictable.py'
2024-03-20T13:38:12,324   adding 'moleculekit/pymolgraphics.py'
2024-03-20T13:38:12,325   adding 'moleculekit/rcsb.py'
2024-03-20T13:38:12,327   adding 'moleculekit/rdkitintegration.py'
2024-03-20T13:38:12,340   adding 'moleculekit/readers.py'
2024-03-20T13:38:12,943   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:13,255   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:13,267   adding 'moleculekit/util.py'
2024-03-20T13:38:13,269   adding 'moleculekit/version.py'
2024-03-20T13:38:13,270   adding 'moleculekit/viewer.py'
2024-03-20T13:38:13,271   adding 'moleculekit/vmd_wrapper'
2024-03-20T13:38:13,273   adding 'moleculekit/vmdgraphics.py'
2024-03-20T13:38:13,275   adding 'moleculekit/vmdviewer.py'
2024-03-20T13:38:13,526   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:13,541   adding 'moleculekit/writers.py'
2024-03-20T13:38:13,807   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:13,816   adding 'moleculekit/atomselect/__init__.py'
2024-03-20T13:38:13,818   adding 'moleculekit/atomselect/analyze.py'
2024-03-20T13:38:13,820   adding 'moleculekit/atomselect/atomselect.py'
2024-03-20T13:38:13,822   adding 'moleculekit/atomselect/languageparser.py'
2024-03-20T13:38:13,925   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-03-20T13:38:13,936   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-03-20T13:38:14,028   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-03-20T13:38:14,037   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-03-20T13:38:14,126   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-03-20T13:38:14,135   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-03-20T13:38:14,238   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-03-20T13:38:14,248   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-03-20T13:38:14,250   adding 'moleculekit/fileformats/__init__.py'
2024-03-20T13:38:14,255   adding 'moleculekit/fileformats/netcdf.py'
2024-03-20T13:38:14,257   adding 'moleculekit/fileformats/utils.py'
2024-03-20T13:38:14,318   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-03-20T13:38:14,325   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-03-20T13:38:14,326   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-03-20T13:38:14,328   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-03-20T13:38:14,329   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-03-20T13:38:14,334   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-03-20T13:38:14,336   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-03-20T13:38:14,399   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-03-20T13:38:14,407   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-03-20T13:38:14,408   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-03-20T13:38:14,410   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-03-20T13:38:14,412   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-03-20T13:38:14,414   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-03-20T13:38:14,415   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-03-20T13:38:14,420   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-03-20T13:38:14,425   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-03-20T13:38:14,520   adding 'moleculekit/fileformats/xtc/trr.c'
2024-03-20T13:38:14,532   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-03-20T13:38:14,533   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-03-20T13:38:14,534   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-03-20T13:38:14,623   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-03-20T13:38:14,632   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-03-20T13:38:14,633   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-03-20T13:38:14,635   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-03-20T13:38:14,636   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-03-20T13:38:14,638   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-03-20T13:38:14,640   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-03-20T13:38:14,641   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-03-20T13:38:14,642   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-03-20T13:38:14,644   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-03-20T13:38:14,651   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-03-20T13:38:14,653   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-03-20T13:38:14,654   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-03-20T13:38:14,656   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-03-20T13:38:14,658   adding 'moleculekit/interactions/__init__.py'
2024-03-20T13:38:14,942   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:15,210   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:15,222   adding 'moleculekit/interactions/interactions.py'
2024-03-20T13:38:15,503   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:15,790   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-03-20T13:38:15,892   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-03-20T13:38:15,901   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-03-20T13:38:15,992   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-03-20T13:38:16,001   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-03-20T13:38:16,093   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-03-20T13:38:16,102   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-03-20T13:38:16,194   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-03-20T13:38:16,203   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-03-20T13:38:16,290   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-03-20T13:38:16,298   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-03-20T13:38:16,300   adding 'moleculekit/pdbx/__init__.py'
2024-03-20T13:38:16,303   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-03-20T13:38:16,306   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-03-20T13:38:16,308   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-03-20T13:38:16,310   adding 'moleculekit/pdbx/reader/__init__.py'
2024-03-20T13:38:16,312   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-03-20T13:38:16,313   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-03-20T13:38:16,315   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-03-20T13:38:16,316   adding 'moleculekit/pdbx/tests/__init__.py'
2024-03-20T13:38:16,318   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-03-20T13:38:16,319   adding 'moleculekit/pdbx/writer/__init__.py'
2024-03-20T13:38:16,321   adding 'moleculekit/ply/__init__.py'
2024-03-20T13:38:16,325   adding 'moleculekit/ply/lex.py'
2024-03-20T13:38:16,337   adding 'moleculekit/ply/yacc.py'
2024-03-20T13:38:16,339   adding 'moleculekit/projections/__init__.py'
2024-03-20T13:38:16,341   adding 'moleculekit/projections/metriccoordinate.py'
2024-03-20T13:38:16,344   adding 'moleculekit/projections/metricdihedral.py'
2024-03-20T13:38:16,348   adding 'moleculekit/projections/metricdistance.py'
2024-03-20T13:38:16,351   adding 'moleculekit/projections/metricfluctuation.py'
2024-03-20T13:38:16,352   adding 'moleculekit/projections/metricgyration.py'
2024-03-20T13:38:16,356   adding 'moleculekit/projections/metricplumed2.py'
2024-03-20T13:38:16,358   adding 'moleculekit/projections/metricrmsd.py'
2024-03-20T13:38:16,360   adding 'moleculekit/projections/metricsasa.py'
2024-03-20T13:38:16,362   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-03-20T13:38:16,364   adding 'moleculekit/projections/metricshell.py'
2024-03-20T13:38:16,365   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-03-20T13:38:16,367   adding 'moleculekit/projections/metrictmscore.py'
2024-03-20T13:38:16,368   adding 'moleculekit/projections/projection.py'
2024-03-20T13:38:16,370   adding 'moleculekit/projections/util.py'
2024-03-20T13:38:16,372   adding 'moleculekit/share/ALA.cif'
2024-03-20T13:38:16,373   adding 'moleculekit/share/backbone.cif'
2024-03-20T13:38:17,678   adding 'moleculekit/share/opm_sequences.json'
2024-03-20T13:38:17,763   adding 'moleculekit/share/atomselect/atomselect.json'
2024-03-20T13:38:17,768   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-03-20T13:38:17,769   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-03-20T13:38:17,770   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-03-20T13:38:17,772   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-03-20T13:38:17,773   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-03-20T13:38:17,774   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-03-20T13:38:17,775   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-03-20T13:38:17,776   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-03-20T13:38:17,778   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-03-20T13:38:17,779   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-03-20T13:38:17,780   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-03-20T13:38:17,781   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-03-20T13:38:17,783   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-03-20T13:38:17,784   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-03-20T13:38:17,785   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-03-20T13:38:17,786   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-03-20T13:38:17,787   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-03-20T13:38:17,789   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-03-20T13:38:17,790   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-03-20T13:38:17,791   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-03-20T13:38:17,792   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-03-20T13:38:17,794   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-03-20T13:38:17,795   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-03-20T13:38:17,796   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-03-20T13:38:17,797   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-03-20T13:38:17,799   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-03-20T13:38:17,800   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-03-20T13:38:17,801   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-03-20T13:38:17,802   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-03-20T13:38:17,803   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-03-20T13:38:17,804   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-03-20T13:38:17,806   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-03-20T13:38:17,807   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-03-20T13:38:17,808   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-03-20T13:38:17,809   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-03-20T13:38:17,810   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-03-20T13:38:17,812   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-03-20T13:38:17,813   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-03-20T13:38:17,814   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-03-20T13:38:17,815   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-03-20T13:38:17,817   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-03-20T13:38:17,818   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-03-20T13:38:17,819   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-03-20T13:38:17,820   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-03-20T13:38:17,821   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-03-20T13:38:17,823   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-03-20T13:38:17,824   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-03-20T13:38:17,825   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-03-20T13:38:17,826   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-03-20T13:38:17,828   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-03-20T13:38:17,829   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-03-20T13:38:17,830   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-03-20T13:38:17,831   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-03-20T13:38:17,832   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-03-20T13:38:17,833   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-03-20T13:38:17,835   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-03-20T13:38:17,836   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-03-20T13:38:17,837   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-03-20T13:38:17,838   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-03-20T13:38:17,839   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-03-20T13:38:17,841   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-03-20T13:38:17,842   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-03-20T13:38:17,843   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-03-20T13:38:17,844   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-03-20T13:38:17,845   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-03-20T13:38:17,847   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-03-20T13:38:17,848   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-03-20T13:38:17,849   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-03-20T13:38:17,850   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-03-20T13:38:17,851   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-03-20T13:38:17,853   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-03-20T13:38:17,854   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-03-20T13:38:17,855   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-03-20T13:38:17,856   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-03-20T13:38:17,857   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-03-20T13:38:17,858   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-03-20T13:38:17,860   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-03-20T13:38:17,861   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-03-20T13:38:17,862   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-03-20T13:38:17,863   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-03-20T13:38:17,864   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-03-20T13:38:17,866   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-03-20T13:38:17,867   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-03-20T13:38:17,868   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-03-20T13:38:17,869   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-03-20T13:38:17,870   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-03-20T13:38:17,872   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-03-20T13:38:17,873   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-03-20T13:38:17,874   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-03-20T13:38:17,875   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-03-20T13:38:17,877   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-03-20T13:38:17,878   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-03-20T13:38:17,879   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-03-20T13:38:17,880   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-03-20T13:38:17,881   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-03-20T13:38:17,883   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-03-20T13:38:17,884   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-03-20T13:38:17,885   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-03-20T13:38:17,886   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-03-20T13:38:17,887   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-03-20T13:38:17,889   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-03-20T13:38:17,890   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-03-20T13:38:17,891   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-03-20T13:38:17,892   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-03-20T13:38:17,894   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-03-20T13:38:17,895   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-03-20T13:38:17,896   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-03-20T13:38:17,897   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-03-20T13:38:17,898   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-03-20T13:38:17,900   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-03-20T13:38:17,901   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-03-20T13:38:17,902   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-03-20T13:38:17,903   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-03-20T13:38:17,904   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-03-20T13:38:17,906   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-03-20T13:38:17,907   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-03-20T13:38:17,908   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-03-20T13:38:17,909   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-03-20T13:38:17,910   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-03-20T13:38:17,912   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-03-20T13:38:17,913   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-03-20T13:38:17,914   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-03-20T13:38:17,915   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-03-20T13:38:17,916   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-03-20T13:38:17,918   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-03-20T13:38:17,919   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-03-20T13:38:17,920   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-03-20T13:38:17,921   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-03-20T13:38:17,923   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-03-20T13:38:17,924   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-03-20T13:38:17,925   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-03-20T13:38:17,926   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-03-20T13:38:17,927   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-03-20T13:38:17,929   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-03-20T13:38:17,930   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-03-20T13:38:17,931   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-03-20T13:38:17,933   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-03-20T13:38:17,934   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-03-20T13:38:17,935   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-03-20T13:38:17,936   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-03-20T13:38:17,937   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-03-20T13:38:17,938   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-03-20T13:38:17,940   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-03-20T13:38:17,941   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-03-20T13:38:17,942   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-03-20T13:38:17,943   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-03-20T13:38:17,945   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-03-20T13:38:17,946   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-03-20T13:38:17,947   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-03-20T13:38:17,948   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-03-20T13:38:17,949   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-03-20T13:38:17,951   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-03-20T13:38:17,952   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-03-20T13:38:17,953   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-03-20T13:38:17,954   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-03-20T13:38:17,956   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-03-20T13:38:17,957   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-03-20T13:38:17,958   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-03-20T13:38:17,959   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-03-20T13:38:17,961   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-03-20T13:38:17,962   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-03-20T13:38:17,963   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-03-20T13:38:17,964   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-03-20T13:38:17,965   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-03-20T13:38:17,967   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-03-20T13:38:17,968   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-03-20T13:38:17,969   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-03-20T13:38:17,970   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-03-20T13:38:17,971   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-03-20T13:38:17,973   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-03-20T13:38:17,974   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-03-20T13:38:17,975   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-03-20T13:38:17,976   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-03-20T13:38:17,977   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-03-20T13:38:17,979   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-03-20T13:38:17,980   adding 'moleculekit/smallmol/__init__.py'
2024-03-20T13:38:17,986   adding 'moleculekit/smallmol/smallmol.py'
2024-03-20T13:38:17,988   adding 'moleculekit/smallmol/smallmollib.py'
2024-03-20T13:38:17,990   adding 'moleculekit/smallmol/test_smallmol.py'
2024-03-20T13:38:17,992   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-03-20T13:38:17,994   adding 'moleculekit/smallmol/util.py'
2024-03-20T13:38:17,995   adding 'moleculekit/smallmol/tools/__init__.py'
2024-03-20T13:38:17,997   adding 'moleculekit/smallmol/tools/clustering.py'
2024-03-20T13:38:17,999   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-03-20T13:38:18,000   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-03-20T13:38:18,091   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-03-20T13:38:18,099   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-03-20T13:38:18,101   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-03-20T13:38:18,102   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-03-20T13:38:18,120   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-03-20T13:38:18,123   adding 'moleculekit/tools/__init__.py'
2024-03-20T13:38:18,125   adding 'moleculekit/tools/atomtyper.py'
2024-03-20T13:38:18,127   adding 'moleculekit/tools/autosegment.py'
2024-03-20T13:38:18,129   adding 'moleculekit/tools/crystalpacking.py'
2024-03-20T13:38:18,133   adding 'moleculekit/tools/detect.py'
2024-03-20T13:38:18,135   adding 'moleculekit/tools/docking.py'
2024-03-20T13:38:18,137   adding 'moleculekit/tools/graphalignment.py'
2024-03-20T13:38:18,138   adding 'moleculekit/tools/hhblitsprofile.py'
2024-03-20T13:38:18,140   adding 'moleculekit/tools/modelling.py'
2024-03-20T13:38:18,141   adding 'moleculekit/tools/moleculechecks.py'
2024-03-20T13:38:18,147   adding 'moleculekit/tools/preparation.py'
2024-03-20T13:38:18,150   adding 'moleculekit/tools/preparation_customres.py'
2024-03-20T13:38:18,152   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-03-20T13:38:18,155   adding 'moleculekit/tools/voxeldescriptors.py'
2024-03-20T13:38:18,157   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-03-20T13:38:18,158   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-03-20T13:38:18,251   adding 'moleculekit/wrapping/wrapping.cpp'
2024-03-20T13:38:18,260   adding 'moleculekit/wrapping/wrapping.pyx'
2024-03-20T13:38:18,262   adding 'moleculekit-1.8.27.dist-info/LICENSE'
2024-03-20T13:38:18,263   adding 'moleculekit-1.8.27.dist-info/METADATA'
2024-03-20T13:38:18,264   adding 'moleculekit-1.8.27.dist-info/WHEEL'
2024-03-20T13:38:18,266   adding 'moleculekit-1.8.27.dist-info/top_level.txt'
2024-03-20T13:38:18,271   adding 'moleculekit-1.8.27.dist-info/RECORD'
2024-03-20T13:38:18,443   removing build/bdist.linux-armv7l/wheel
2024-03-20T13:38:18,722   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-03-20T13:38:19,050   Created wheel for moleculekit: filename=moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl size=14902153 sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a
2024-03-20T13:38:19,052   Stored in directory: /tmp/pip-ephem-wheel-cache-csf16nau/wheels/61/56/91/b3df729350e2f0e2e3c7c330689e5a7803023fea3b8b315dde
2024-03-20T13:38:19,079 Successfully built moleculekit
2024-03-20T13:38:19,430 Removed build tracker: '/tmp/pip-build-tracker-lqqf1fmq'