2024-03-20T15:46:13,364 Created temporary directory: /tmp/pip-build-tracker-umhtog3a 2024-03-20T15:46:13,365 Initialized build tracking at /tmp/pip-build-tracker-umhtog3a 2024-03-20T15:46:13,366 Created build tracker: /tmp/pip-build-tracker-umhtog3a 2024-03-20T15:46:13,366 Entered build tracker: /tmp/pip-build-tracker-umhtog3a 2024-03-20T15:46:13,367 Created temporary directory: /tmp/pip-wheel-0kzcmkx2 2024-03-20T15:46:13,370 Created temporary directory: /tmp/pip-ephem-wheel-cache-w53qnwr3 2024-03-20T15:46:13,393 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T15:46:13,396 2 location(s) to search for versions of pymlst: 2024-03-20T15:46:13,396 * https://pypi.org/simple/pymlst/ 2024-03-20T15:46:13,396 * https://www.piwheels.org/simple/pymlst/ 2024-03-20T15:46:13,397 Fetching project page and analyzing links: https://pypi.org/simple/pymlst/ 2024-03-20T15:46:13,398 Getting page https://pypi.org/simple/pymlst/ 2024-03-20T15:46:13,399 Found index url https://pypi.org/simple/ 2024-03-20T15:46:13,637 Fetched page https://pypi.org/simple/pymlst/ as application/vnd.pypi.simple.v1+json 2024-03-20T15:46:13,640 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/c9/58/b20aff870603ed350a23e651f3051764f84411f47dce6a04fb7005da52a4/PyMLST-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,641 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/ee/ae/cb1ae640761c8bd7001800973a72b475552793dd99b8caa5e078f29a0faa/PyMLST-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,641 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/46/2d/d32aed32e3a77ae21226a144f0ca31b040907cfa65c6b0de4c95a49768bf/PyMLST-2.1.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,642 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/a1/ac/76b9312b65e1f7f7638b6eb46cecb9341c7d55a34a9796b96ce22366522f/PyMLST-2.1.2-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,643 Found link https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.2 2024-03-20T15:46:13,643 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/79/fa/b291f5dbc74c78c7ff6f0e4225d1199d10d3e750c4273935f83327fbfedd/PyMLST-2.1.3-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,644 Found link https://files.pythonhosted.org/packages/f1/ee/77f0663a2221d7e44b07a14f74c6d3279c19640338e84f2c39ed984bb166/PyMLST-2.1.3.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.3 2024-03-20T15:46:13,645 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/58/2c/9087cc4a524d0ebf9a2104e229422266299f5e37d01d09f75d10288d7162/PyMLST-2.1.4-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,646 Found link https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.4 2024-03-20T15:46:13,647 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/10/24/f5fe2d09f56d6e608f0807a60f2734c2919a594bfeaee597af31dfc74324/PyMLST-2.1.5-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,647 Found link https://files.pythonhosted.org/packages/e4/b0/96c1a8c9399e5bb594048bf3c9cbedb1f1708d2bd251cd540460dfb343eb/PyMLST-2.1.5.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.5 2024-03-20T15:46:13,648 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/dd/50/964d6216670084035fbd5eba552322f6899802ac8603b8ba68e5806d64b8/PyMLST-2.1.6-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,649 Found link https://files.pythonhosted.org/packages/d9/20/714bafa3d1d2d2ec7bbed2ada2109fa23c00432f7b4c31892b216b5bc3b4/PyMLST-2.1.6.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.6 2024-03-20T15:46:13,650 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymlst/ 2024-03-20T15:46:13,651 Getting page https://www.piwheels.org/simple/pymlst/ 2024-03-20T15:46:13,652 Found index url https://www.piwheels.org/simple/ 2024-03-20T15:46:13,973 Fetched page https://www.piwheels.org/simple/pymlst/ as text/html 2024-03-20T15:46:13,975 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.5-py3-none-any.whl#sha256=e38b9c1963b2c716d732ab1dc563d6f74b98e4ccef1a40ae039525256743bd7a (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,975 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.4-py3-none-any.whl#sha256=1ef8f7966d09ce4aaf7cb04b9eb249944571ae0ea90baf0208af43def98b40aa (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,976 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.3-py3-none-any.whl#sha256=f2069f50ecc8c8b203e9257f5c011010e50959605a806e70142dfde35d0e77eb (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,976 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.2-py3-none-any.whl#sha256=23fec25be78d92f9683e799227d86c9a19ca909d5f9ecae088c1d70ef372395b (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2024-03-20T15:46:13,977 Skipping link: not a file: https://www.piwheels.org/simple/pymlst/ 2024-03-20T15:46:13,978 Skipping link: not a file: https://pypi.org/simple/pymlst/ 2024-03-20T15:46:13,996 Given no hashes to check 1 links for project 'pymlst': discarding no candidates 2024-03-20T15:46:14,014 Collecting pymlst==2.1.6 2024-03-20T15:46:14,017 Created temporary directory: /tmp/pip-unpack-fekngu3n 2024-03-20T15:46:14,226 Downloading PyMLST-2.1.6.tar.gz (41 kB) 2024-03-20T15:46:14,388 Added pymlst==2.1.6 from https://files.pythonhosted.org/packages/d9/20/714bafa3d1d2d2ec7bbed2ada2109fa23c00432f7b4c31892b216b5bc3b4/PyMLST-2.1.6.tar.gz to build tracker '/tmp/pip-build-tracker-umhtog3a' 2024-03-20T15:46:14,389 Running setup.py (path:/tmp/pip-wheel-0kzcmkx2/pymlst_cb1c7281c3404368aed7232b596659c6/setup.py) egg_info for package pymlst 2024-03-20T15:46:14,390 Created temporary directory: /tmp/pip-pip-egg-info-tift3ab_ 2024-03-20T15:46:14,391 Preparing metadata (setup.py): started 2024-03-20T15:46:14,392 Running command python setup.py egg_info 2024-03-20T15:46:14,841 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-20T15:46:14,841 !! 2024-03-20T15:46:14,842 ******************************************************************************** 2024-03-20T15:46:14,843 Usage of dash-separated 'description-file' will not be supported in future 2024-03-20T15:46:14,843 versions. Please use the underscore name 'description_file' instead. 2024-03-20T15:46:14,845 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-20T15:46:14,845 or your builds will no longer be supported. 2024-03-20T15:46:14,847 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-20T15:46:14,847 ******************************************************************************** 2024-03-20T15:46:14,848 !! 2024-03-20T15:46:14,849 opt = self.warn_dash_deprecation(opt, section) 2024-03-20T15:46:15,092 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-03-20T15:46:15,093 !! 2024-03-20T15:46:15,094 ******************************************************************************** 2024-03-20T15:46:15,095 Requirements should be satisfied by a PEP 517 installer. 2024-03-20T15:46:15,095 If you are using pip, you can try `pip install --use-pep517`. 2024-03-20T15:46:15,096 ******************************************************************************** 2024-03-20T15:46:15,097 !! 2024-03-20T15:46:15,097 dist.fetch_build_eggs(dist.setup_requires) 2024-03-20T15:46:15,427 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-20T15:46:15,428 !! 2024-03-20T15:46:15,429 ******************************************************************************** 2024-03-20T15:46:15,429 Usage of dash-separated 'description-file' will not be supported in future 2024-03-20T15:46:15,430 versions. Please use the underscore name 'description_file' instead. 2024-03-20T15:46:15,431 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-20T15:46:15,431 or your builds will no longer be supported. 2024-03-20T15:46:15,432 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-20T15:46:15,432 ******************************************************************************** 2024-03-20T15:46:15,433 !! 2024-03-20T15:46:15,434 opt = self.warn_dash_deprecation(opt, section) 2024-03-20T15:46:15,460 running egg_info 2024-03-20T15:46:15,461 creating /tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info 2024-03-20T15:46:15,486 writing /tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/PKG-INFO 2024-03-20T15:46:15,489 writing dependency_links to /tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/dependency_links.txt 2024-03-20T15:46:15,491 writing entry points to /tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/entry_points.txt 2024-03-20T15:46:15,492 writing requirements to /tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/requires.txt 2024-03-20T15:46:15,493 writing top-level names to /tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/top_level.txt 2024-03-20T15:46:15,495 writing manifest file '/tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/SOURCES.txt' 2024-03-20T15:46:15,579 reading manifest file '/tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/SOURCES.txt' 2024-03-20T15:46:15,581 reading manifest template 'MANIFEST.in' 2024-03-20T15:46:15,583 adding license file 'LICENSE' 2024-03-20T15:46:15,586 writing manifest file '/tmp/pip-pip-egg-info-tift3ab_/PyMLST.egg-info/SOURCES.txt' 2024-03-20T15:46:15,696 Preparing metadata (setup.py): finished with status 'done' 2024-03-20T15:46:15,700 Source in /tmp/pip-wheel-0kzcmkx2/pymlst_cb1c7281c3404368aed7232b596659c6 has version 2.1.6, which satisfies requirement pymlst==2.1.6 from https://files.pythonhosted.org/packages/d9/20/714bafa3d1d2d2ec7bbed2ada2109fa23c00432f7b4c31892b216b5bc3b4/PyMLST-2.1.6.tar.gz 2024-03-20T15:46:15,701 Removed pymlst==2.1.6 from https://files.pythonhosted.org/packages/d9/20/714bafa3d1d2d2ec7bbed2ada2109fa23c00432f7b4c31892b216b5bc3b4/PyMLST-2.1.6.tar.gz from build tracker '/tmp/pip-build-tracker-umhtog3a' 2024-03-20T15:46:15,707 Created temporary directory: /tmp/pip-unpack-n2rf2s7h 2024-03-20T15:46:15,708 Created temporary directory: /tmp/pip-unpack-hm9697dy 2024-03-20T15:46:15,725 Building wheels for collected packages: pymlst 2024-03-20T15:46:15,730 Created temporary directory: /tmp/pip-wheel-mtrawe8_ 2024-03-20T15:46:15,730 Building wheel for pymlst (setup.py): started 2024-03-20T15:46:15,731 Destination directory: /tmp/pip-wheel-mtrawe8_ 2024-03-20T15:46:15,732 Running command python setup.py bdist_wheel 2024-03-20T15:46:16,172 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-20T15:46:16,172 !! 2024-03-20T15:46:16,174 ******************************************************************************** 2024-03-20T15:46:16,174 Usage of dash-separated 'description-file' will not be supported in future 2024-03-20T15:46:16,175 versions. Please use the underscore name 'description_file' instead. 2024-03-20T15:46:16,176 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-20T15:46:16,176 or your builds will no longer be supported. 2024-03-20T15:46:16,177 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-20T15:46:16,177 ******************************************************************************** 2024-03-20T15:46:16,178 !! 2024-03-20T15:46:16,179 opt = self.warn_dash_deprecation(opt, section) 2024-03-20T15:46:16,409 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-03-20T15:46:16,409 !! 2024-03-20T15:46:16,410 ******************************************************************************** 2024-03-20T15:46:16,411 Requirements should be satisfied by a PEP 517 installer. 2024-03-20T15:46:16,411 If you are using pip, you can try `pip install --use-pep517`. 2024-03-20T15:46:16,412 ******************************************************************************** 2024-03-20T15:46:16,413 !! 2024-03-20T15:46:16,413 dist.fetch_build_eggs(dist.setup_requires) 2024-03-20T15:46:16,741 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-03-20T15:46:16,741 !! 2024-03-20T15:46:16,742 ******************************************************************************** 2024-03-20T15:46:16,743 Usage of dash-separated 'description-file' will not be supported in future 2024-03-20T15:46:16,744 versions. Please use the underscore name 'description_file' instead. 2024-03-20T15:46:16,745 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-03-20T15:46:16,745 or your builds will no longer be supported. 2024-03-20T15:46:16,747 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-03-20T15:46:16,747 ******************************************************************************** 2024-03-20T15:46:16,749 !! 2024-03-20T15:46:16,749 opt = self.warn_dash_deprecation(opt, section) 2024-03-20T15:46:16,772 running bdist_wheel 2024-03-20T15:46:16,869 running build 2024-03-20T15:46:16,869 running build_py 2024-03-20T15:46:16,897 creating build 2024-03-20T15:46:16,897 creating build/lib 2024-03-20T15:46:16,898 creating build/lib/pymlst 2024-03-20T15:46:16,899 copying pymlst/version.py -> build/lib/pymlst 2024-03-20T15:46:16,901 copying pymlst/cmd.py -> build/lib/pymlst 2024-03-20T15:46:16,903 copying pymlst/config.py -> build/lib/pymlst 2024-03-20T15:46:16,904 copying pymlst/__init__.py -> build/lib/pymlst 2024-03-20T15:46:16,907 creating build/lib/pymlst/cla 2024-03-20T15:46:16,908 copying pymlst/cla/core.py -> build/lib/pymlst/cla 2024-03-20T15:46:16,911 copying pymlst/cla/model.py -> build/lib/pymlst/cla 2024-03-20T15:46:16,912 copying pymlst/cla/__init__.py -> build/lib/pymlst/cla 2024-03-20T15:46:16,914 creating build/lib/pymlst/wg 2024-03-20T15:46:16,915 copying pymlst/wg/extractors.py -> build/lib/pymlst/wg 2024-03-20T15:46:16,918 copying pymlst/wg/core.py -> build/lib/pymlst/wg 2024-03-20T15:46:16,921 copying pymlst/wg/model.py -> build/lib/pymlst/wg 2024-03-20T15:46:16,923 copying pymlst/wg/__init__.py -> build/lib/pymlst/wg 2024-03-20T15:46:16,925 creating build/lib/pymlst/common 2024-03-20T15:46:16,926 copying pymlst/common/flag.py -> build/lib/pymlst/common 2024-03-20T15:46:16,928 copying pymlst/common/blat.py -> build/lib/pymlst/common 2024-03-20T15:46:16,930 copying pymlst/common/mafft.py -> build/lib/pymlst/common 2024-03-20T15:46:16,931 copying pymlst/common/utils.py -> build/lib/pymlst/common 2024-03-20T15:46:16,933 copying pymlst/common/kma.py -> build/lib/pymlst/common 2024-03-20T15:46:16,935 copying pymlst/common/exceptions.py -> build/lib/pymlst/common 2024-03-20T15:46:16,937 copying pymlst/common/__init__.py -> build/lib/pymlst/common 2024-03-20T15:46:16,938 copying pymlst/common/psl.py -> build/lib/pymlst/common 2024-03-20T15:46:16,940 copying pymlst/common/web.py -> build/lib/pymlst/common 2024-03-20T15:46:16,943 creating build/lib/pymlst/cla/commands 2024-03-20T15:46:16,944 copying pymlst/cla/commands/import.py -> build/lib/pymlst/cla/commands 2024-03-20T15:46:16,946 copying pymlst/cla/commands/search.py -> build/lib/pymlst/cla/commands 2024-03-20T15:46:16,948 copying pymlst/cla/commands/__init__.py -> build/lib/pymlst/cla/commands 2024-03-20T15:46:16,949 copying pymlst/cla/commands/search2.py -> build/lib/pymlst/cla/commands 2024-03-20T15:46:16,951 copying pymlst/cla/commands/create.py -> build/lib/pymlst/cla/commands 2024-03-20T15:46:16,953 copying pymlst/cla/commands/remove.py -> build/lib/pymlst/cla/commands 2024-03-20T15:46:16,956 creating build/lib/pymlst/wg/commands 2024-03-20T15:46:16,956 copying pymlst/wg/commands/add.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,958 copying pymlst/wg/commands/add2.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,960 copying pymlst/wg/commands/msa.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,962 copying pymlst/wg/commands/import.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,964 copying pymlst/wg/commands/mlst.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,966 copying pymlst/wg/commands/gene.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,967 copying pymlst/wg/commands/distance.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,969 copying pymlst/wg/commands/strain.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,971 copying pymlst/wg/commands/recombination.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,972 copying pymlst/wg/commands/__init__.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,974 copying pymlst/wg/commands/subgraph.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,976 copying pymlst/wg/commands/sequence.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,977 copying pymlst/wg/commands/stats.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,979 copying pymlst/wg/commands/create.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,981 copying pymlst/wg/commands/remove.py -> build/lib/pymlst/wg/commands 2024-03-20T15:46:16,983 creating build/lib/pymlst/common/commands 2024-03-20T15:46:16,984 copying pymlst/common/commands/configure.py -> build/lib/pymlst/common/commands 2024-03-20T15:46:16,985 copying pymlst/common/commands/__init__.py -> build/lib/pymlst/common/commands 2024-03-20T15:46:16,987 running egg_info 2024-03-20T15:46:17,036 writing PyMLST.egg-info/PKG-INFO 2024-03-20T15:46:17,039 writing dependency_links to PyMLST.egg-info/dependency_links.txt 2024-03-20T15:46:17,040 writing entry points to PyMLST.egg-info/entry_points.txt 2024-03-20T15:46:17,042 writing requirements to PyMLST.egg-info/requires.txt 2024-03-20T15:46:17,043 writing top-level names to PyMLST.egg-info/top_level.txt 2024-03-20T15:46:17,076 reading manifest file 'PyMLST.egg-info/SOURCES.txt' 2024-03-20T15:46:17,079 reading manifest template 'MANIFEST.in' 2024-03-20T15:46:17,081 adding license file 'LICENSE' 2024-03-20T15:46:17,084 writing manifest file 'PyMLST.egg-info/SOURCES.txt' 2024-03-20T15:46:17,087 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pymlst.data.alembic' is absent from the `packages` configuration. 2024-03-20T15:46:17,088 !! 2024-03-20T15:46:17,089 ******************************************************************************** 2024-03-20T15:46:17,090 ############################ 2024-03-20T15:46:17,090 # Package would be ignored # 2024-03-20T15:46:17,091 ############################ 2024-03-20T15:46:17,091 Python recognizes 'pymlst.data.alembic' as an importable package[^1], 2024-03-20T15:46:17,092 but it is absent from setuptools' `packages` configuration. 2024-03-20T15:46:17,093 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-20T15:46:17,093 package, please make sure that 'pymlst.data.alembic' is explicitly added 2024-03-20T15:46:17,094 to the `packages` configuration field. 2024-03-20T15:46:17,095 Alternatively, you can also rely on setuptools' discovery methods 2024-03-20T15:46:17,095 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-20T15:46:17,095 instead of `find_packages(...)`/`find:`). 2024-03-20T15:46:17,096 You can read more about "package discovery" on setuptools documentation page: 2024-03-20T15:46:17,097 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-20T15:46:17,098 If you don't want 'pymlst.data.alembic' to be distributed and are 2024-03-20T15:46:17,099 already explicitly excluding 'pymlst.data.alembic' via 2024-03-20T15:46:17,099 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-20T15:46:17,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-20T15:46:17,100 combination with a more fine grained `package-data` configuration. 2024-03-20T15:46:17,101 You can read more about "package data files" on setuptools documentation page: 2024-03-20T15:46:17,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-20T15:46:17,104 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-20T15:46:17,104 even if it does not contain any `.py` files. 2024-03-20T15:46:17,105 On the other hand, currently there is no concept of package data 2024-03-20T15:46:17,105 directory, all directories are treated like packages. 2024-03-20T15:46:17,106 ******************************************************************************** 2024-03-20T15:46:17,107 !! 2024-03-20T15:46:17,108 check.warn(importable) 2024-03-20T15:46:17,108 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pymlst.data.alembic.cla' is absent from the `packages` configuration. 2024-03-20T15:46:17,109 !! 2024-03-20T15:46:17,110 ******************************************************************************** 2024-03-20T15:46:17,110 ############################ 2024-03-20T15:46:17,111 # Package would be ignored # 2024-03-20T15:46:17,111 ############################ 2024-03-20T15:46:17,112 Python recognizes 'pymlst.data.alembic.cla' as an importable package[^1], 2024-03-20T15:46:17,112 but it is absent from setuptools' `packages` configuration. 2024-03-20T15:46:17,113 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-20T15:46:17,114 package, please make sure that 'pymlst.data.alembic.cla' is explicitly added 2024-03-20T15:46:17,114 to the `packages` configuration field. 2024-03-20T15:46:17,115 Alternatively, you can also rely on setuptools' discovery methods 2024-03-20T15:46:17,116 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-20T15:46:17,116 instead of `find_packages(...)`/`find:`). 2024-03-20T15:46:17,118 You can read more about "package discovery" on setuptools documentation page: 2024-03-20T15:46:17,119 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-20T15:46:17,120 If you don't want 'pymlst.data.alembic.cla' to be distributed and are 2024-03-20T15:46:17,121 already explicitly excluding 'pymlst.data.alembic.cla' via 2024-03-20T15:46:17,122 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-20T15:46:17,122 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-20T15:46:17,122 combination with a more fine grained `package-data` configuration. 2024-03-20T15:46:17,123 You can read more about "package data files" on setuptools documentation page: 2024-03-20T15:46:17,124 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-20T15:46:17,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-20T15:46:17,126 even if it does not contain any `.py` files. 2024-03-20T15:46:17,126 On the other hand, currently there is no concept of package data 2024-03-20T15:46:17,127 directory, all directories are treated like packages. 2024-03-20T15:46:17,127 ******************************************************************************** 2024-03-20T15:46:17,128 !! 2024-03-20T15:46:17,128 check.warn(importable) 2024-03-20T15:46:17,129 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pymlst.data.alembic.cla.versions' is absent from the `packages` configuration. 2024-03-20T15:46:17,129 !! 2024-03-20T15:46:17,130 ******************************************************************************** 2024-03-20T15:46:17,131 ############################ 2024-03-20T15:46:17,131 # Package would be ignored # 2024-03-20T15:46:17,132 ############################ 2024-03-20T15:46:17,132 Python recognizes 'pymlst.data.alembic.cla.versions' as an importable package[^1], 2024-03-20T15:46:17,133 but it is absent from setuptools' `packages` configuration. 2024-03-20T15:46:17,134 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-20T15:46:17,134 package, please make sure that 'pymlst.data.alembic.cla.versions' is explicitly added 2024-03-20T15:46:17,135 to the `packages` configuration field. 2024-03-20T15:46:17,136 Alternatively, you can also rely on setuptools' discovery methods 2024-03-20T15:46:17,137 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-20T15:46:17,137 instead of `find_packages(...)`/`find:`). 2024-03-20T15:46:17,139 You can read more about "package discovery" on setuptools documentation page: 2024-03-20T15:46:17,140 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-20T15:46:17,141 If you don't want 'pymlst.data.alembic.cla.versions' to be distributed and are 2024-03-20T15:46:17,141 already explicitly excluding 'pymlst.data.alembic.cla.versions' via 2024-03-20T15:46:17,142 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-20T15:46:17,143 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-20T15:46:17,143 combination with a more fine grained `package-data` configuration. 2024-03-20T15:46:17,144 You can read more about "package data files" on setuptools documentation page: 2024-03-20T15:46:17,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-20T15:46:17,147 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-20T15:46:17,148 even if it does not contain any `.py` files. 2024-03-20T15:46:17,148 On the other hand, currently there is no concept of package data 2024-03-20T15:46:17,149 directory, all directories are treated like packages. 2024-03-20T15:46:17,150 ******************************************************************************** 2024-03-20T15:46:17,151 !! 2024-03-20T15:46:17,151 check.warn(importable) 2024-03-20T15:46:17,153 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pymlst.data.alembic.wg' is absent from the `packages` configuration. 2024-03-20T15:46:17,153 !! 2024-03-20T15:46:17,154 ******************************************************************************** 2024-03-20T15:46:17,154 ############################ 2024-03-20T15:46:17,155 # Package would be ignored # 2024-03-20T15:46:17,155 ############################ 2024-03-20T15:46:17,155 Python recognizes 'pymlst.data.alembic.wg' as an importable package[^1], 2024-03-20T15:46:17,156 but it is absent from setuptools' `packages` configuration. 2024-03-20T15:46:17,157 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-20T15:46:17,157 package, please make sure that 'pymlst.data.alembic.wg' is explicitly added 2024-03-20T15:46:17,158 to the `packages` configuration field. 2024-03-20T15:46:17,159 Alternatively, you can also rely on setuptools' discovery methods 2024-03-20T15:46:17,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-20T15:46:17,160 instead of `find_packages(...)`/`find:`). 2024-03-20T15:46:17,161 You can read more about "package discovery" on setuptools documentation page: 2024-03-20T15:46:17,161 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-20T15:46:17,162 If you don't want 'pymlst.data.alembic.wg' to be distributed and are 2024-03-20T15:46:17,163 already explicitly excluding 'pymlst.data.alembic.wg' via 2024-03-20T15:46:17,163 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-20T15:46:17,164 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-20T15:46:17,165 combination with a more fine grained `package-data` configuration. 2024-03-20T15:46:17,166 You can read more about "package data files" on setuptools documentation page: 2024-03-20T15:46:17,167 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-20T15:46:17,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-20T15:46:17,169 even if it does not contain any `.py` files. 2024-03-20T15:46:17,170 On the other hand, currently there is no concept of package data 2024-03-20T15:46:17,170 directory, all directories are treated like packages. 2024-03-20T15:46:17,171 ******************************************************************************** 2024-03-20T15:46:17,172 !! 2024-03-20T15:46:17,173 check.warn(importable) 2024-03-20T15:46:17,173 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'pymlst.data.alembic.wg.versions' is absent from the `packages` configuration. 2024-03-20T15:46:17,174 !! 2024-03-20T15:46:17,175 ******************************************************************************** 2024-03-20T15:46:17,175 ############################ 2024-03-20T15:46:17,176 # Package would be ignored # 2024-03-20T15:46:17,177 ############################ 2024-03-20T15:46:17,177 Python recognizes 'pymlst.data.alembic.wg.versions' as an importable package[^1], 2024-03-20T15:46:17,178 but it is absent from setuptools' `packages` configuration. 2024-03-20T15:46:17,179 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-20T15:46:17,180 package, please make sure that 'pymlst.data.alembic.wg.versions' is explicitly added 2024-03-20T15:46:17,180 to the `packages` configuration field. 2024-03-20T15:46:17,182 Alternatively, you can also rely on setuptools' discovery methods 2024-03-20T15:46:17,182 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-20T15:46:17,183 instead of `find_packages(...)`/`find:`). 2024-03-20T15:46:17,184 You can read more about "package discovery" on setuptools documentation page: 2024-03-20T15:46:17,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-20T15:46:17,186 If you don't want 'pymlst.data.alembic.wg.versions' to be distributed and are 2024-03-20T15:46:17,186 already explicitly excluding 'pymlst.data.alembic.wg.versions' via 2024-03-20T15:46:17,186 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-20T15:46:17,187 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-20T15:46:17,187 combination with a more fine grained `package-data` configuration. 2024-03-20T15:46:17,188 You can read more about "package data files" on setuptools documentation page: 2024-03-20T15:46:17,189 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-20T15:46:17,190 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-20T15:46:17,191 even if it does not contain any `.py` files. 2024-03-20T15:46:17,191 On the other hand, currently there is no concept of package data 2024-03-20T15:46:17,191 directory, all directories are treated like packages. 2024-03-20T15:46:17,192 ******************************************************************************** 2024-03-20T15:46:17,193 !! 2024-03-20T15:46:17,193 check.warn(importable) 2024-03-20T15:46:17,194 creating build/lib/pymlst/data 2024-03-20T15:46:17,194 creating build/lib/pymlst/data/alembic 2024-03-20T15:46:17,195 copying pymlst/data/alembic/alembic.ini -> build/lib/pymlst/data/alembic 2024-03-20T15:46:17,195 creating build/lib/pymlst/data/alembic/cla 2024-03-20T15:46:17,196 copying pymlst/data/alembic/cla/env.py -> build/lib/pymlst/data/alembic/cla 2024-03-20T15:46:17,196 copying pymlst/data/alembic/cla/script.py.mako -> build/lib/pymlst/data/alembic/cla 2024-03-20T15:46:17,197 creating build/lib/pymlst/data/alembic/cla/versions 2024-03-20T15:46:17,198 copying pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/lib/pymlst/data/alembic/cla/versions 2024-03-20T15:46:17,198 creating build/lib/pymlst/data/alembic/wg 2024-03-20T15:46:17,199 copying pymlst/data/alembic/wg/env.py -> build/lib/pymlst/data/alembic/wg 2024-03-20T15:46:17,199 copying pymlst/data/alembic/wg/script.py.mako -> build/lib/pymlst/data/alembic/wg 2024-03-20T15:46:17,200 creating build/lib/pymlst/data/alembic/wg/versions 2024-03-20T15:46:17,201 copying pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/lib/pymlst/data/alembic/wg/versions 2024-03-20T15:46:17,201 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-20T15:46:17,202 !! 2024-03-20T15:46:17,203 ******************************************************************************** 2024-03-20T15:46:17,203 Please avoid running ``setup.py`` directly. 2024-03-20T15:46:17,204 Instead, use pypa/build, pypa/installer or other 2024-03-20T15:46:17,204 standards-based tools. 2024-03-20T15:46:17,205 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-20T15:46:17,206 ******************************************************************************** 2024-03-20T15:46:17,207 !! 2024-03-20T15:46:17,207 self.initialize_options() 2024-03-20T15:46:17,208 installing to build/bdist.linux-armv7l/wheel 2024-03-20T15:46:17,209 running install 2024-03-20T15:46:17,209 running install_lib 2024-03-20T15:46:17,231 creating build/bdist.linux-armv7l 2024-03-20T15:46:17,231 creating build/bdist.linux-armv7l/wheel 2024-03-20T15:46:17,233 creating build/bdist.linux-armv7l/wheel/pymlst 2024-03-20T15:46:17,234 creating build/bdist.linux-armv7l/wheel/pymlst/data 2024-03-20T15:46:17,236 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic 2024-03-20T15:46:17,237 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2024-03-20T15:46:17,238 copying build/lib/pymlst/data/alembic/cla/env.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2024-03-20T15:46:17,240 copying build/lib/pymlst/data/alembic/cla/script.py.mako -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2024-03-20T15:46:17,242 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions 2024-03-20T15:46:17,243 copying build/lib/pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions 2024-03-20T15:46:17,245 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2024-03-20T15:46:17,250 copying build/lib/pymlst/data/alembic/wg/env.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2024-03-20T15:46:17,252 copying build/lib/pymlst/data/alembic/wg/script.py.mako -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2024-03-20T15:46:17,254 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions 2024-03-20T15:46:17,255 copying build/lib/pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions 2024-03-20T15:46:17,257 copying build/lib/pymlst/data/alembic/alembic.ini -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic 2024-03-20T15:46:17,259 copying build/lib/pymlst/version.py -> build/bdist.linux-armv7l/wheel/pymlst 2024-03-20T15:46:17,261 creating build/bdist.linux-armv7l/wheel/pymlst/cla 2024-03-20T15:46:17,262 copying build/lib/pymlst/cla/core.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2024-03-20T15:46:17,265 copying build/lib/pymlst/cla/model.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2024-03-20T15:46:17,268 creating build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,269 copying build/lib/pymlst/cla/commands/import.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,271 copying build/lib/pymlst/cla/commands/search.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,274 copying build/lib/pymlst/cla/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,275 copying build/lib/pymlst/cla/commands/search2.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,277 copying build/lib/pymlst/cla/commands/create.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,279 copying build/lib/pymlst/cla/commands/remove.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2024-03-20T15:46:17,281 copying build/lib/pymlst/cla/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2024-03-20T15:46:17,284 creating build/bdist.linux-armv7l/wheel/pymlst/wg 2024-03-20T15:46:17,285 copying build/lib/pymlst/wg/extractors.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2024-03-20T15:46:17,288 copying build/lib/pymlst/wg/core.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2024-03-20T15:46:17,291 copying build/lib/pymlst/wg/model.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2024-03-20T15:46:17,293 creating build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,294 copying build/lib/pymlst/wg/commands/add.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,296 copying build/lib/pymlst/wg/commands/add2.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,298 copying build/lib/pymlst/wg/commands/msa.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,300 copying build/lib/pymlst/wg/commands/import.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,303 copying build/lib/pymlst/wg/commands/mlst.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,305 copying build/lib/pymlst/wg/commands/gene.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,307 copying build/lib/pymlst/wg/commands/distance.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,309 copying build/lib/pymlst/wg/commands/strain.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,311 copying build/lib/pymlst/wg/commands/recombination.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,313 copying build/lib/pymlst/wg/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,315 copying build/lib/pymlst/wg/commands/subgraph.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,316 copying build/lib/pymlst/wg/commands/sequence.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,318 copying build/lib/pymlst/wg/commands/stats.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,320 copying build/lib/pymlst/wg/commands/create.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,322 copying build/lib/pymlst/wg/commands/remove.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2024-03-20T15:46:17,324 copying build/lib/pymlst/wg/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2024-03-20T15:46:17,327 creating build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,328 copying build/lib/pymlst/common/flag.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,330 copying build/lib/pymlst/common/blat.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,332 copying build/lib/pymlst/common/mafft.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,334 copying build/lib/pymlst/common/utils.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,336 copying build/lib/pymlst/common/kma.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,338 copying build/lib/pymlst/common/exceptions.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,341 creating build/bdist.linux-armv7l/wheel/pymlst/common/commands 2024-03-20T15:46:17,342 copying build/lib/pymlst/common/commands/configure.py -> build/bdist.linux-armv7l/wheel/pymlst/common/commands 2024-03-20T15:46:17,344 copying build/lib/pymlst/common/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/common/commands 2024-03-20T15:46:17,346 copying build/lib/pymlst/common/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,348 copying build/lib/pymlst/common/psl.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,350 copying build/lib/pymlst/common/web.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2024-03-20T15:46:17,353 copying build/lib/pymlst/cmd.py -> build/bdist.linux-armv7l/wheel/pymlst 2024-03-20T15:46:17,355 copying build/lib/pymlst/config.py -> build/bdist.linux-armv7l/wheel/pymlst 2024-03-20T15:46:17,357 copying build/lib/pymlst/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst 2024-03-20T15:46:17,359 running install_egg_info 2024-03-20T15:46:17,385 Copying PyMLST.egg-info to build/bdist.linux-armv7l/wheel/PyMLST-2.1.6-py3.11.egg-info 2024-03-20T15:46:17,396 running install_scripts 2024-03-20T15:46:17,414 creating build/bdist.linux-armv7l/wheel/PyMLST-2.1.6.dist-info/WHEEL 2024-03-20T15:46:17,416 creating '/tmp/pip-wheel-mtrawe8_/PyMLST-2.1.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-20T15:46:17,420 adding 'pymlst/__init__.py' 2024-03-20T15:46:17,422 adding 'pymlst/cmd.py' 2024-03-20T15:46:17,423 adding 'pymlst/config.py' 2024-03-20T15:46:17,425 adding 'pymlst/version.py' 2024-03-20T15:46:17,427 adding 'pymlst/cla/__init__.py' 2024-03-20T15:46:17,430 adding 'pymlst/cla/core.py' 2024-03-20T15:46:17,432 adding 'pymlst/cla/model.py' 2024-03-20T15:46:17,434 adding 'pymlst/cla/commands/__init__.py' 2024-03-20T15:46:17,435 adding 'pymlst/cla/commands/create.py' 2024-03-20T15:46:17,437 adding 'pymlst/cla/commands/import.py' 2024-03-20T15:46:17,439 adding 'pymlst/cla/commands/remove.py' 2024-03-20T15:46:17,440 adding 'pymlst/cla/commands/search.py' 2024-03-20T15:46:17,442 adding 'pymlst/cla/commands/search2.py' 2024-03-20T15:46:17,444 adding 'pymlst/common/__init__.py' 2024-03-20T15:46:17,445 adding 'pymlst/common/blat.py' 2024-03-20T15:46:17,447 adding 'pymlst/common/exceptions.py' 2024-03-20T15:46:17,448 adding 'pymlst/common/flag.py' 2024-03-20T15:46:17,451 adding 'pymlst/common/kma.py' 2024-03-20T15:46:17,452 adding 'pymlst/common/mafft.py' 2024-03-20T15:46:17,454 adding 'pymlst/common/psl.py' 2024-03-20T15:46:17,456 adding 'pymlst/common/utils.py' 2024-03-20T15:46:17,458 adding 'pymlst/common/web.py' 2024-03-20T15:46:17,460 adding 'pymlst/common/commands/__init__.py' 2024-03-20T15:46:17,462 adding 'pymlst/common/commands/configure.py' 2024-03-20T15:46:17,464 adding 'pymlst/data/alembic/alembic.ini' 2024-03-20T15:46:17,466 adding 'pymlst/data/alembic/cla/env.py' 2024-03-20T15:46:17,468 adding 'pymlst/data/alembic/cla/script.py.mako' 2024-03-20T15:46:17,470 adding 'pymlst/data/alembic/cla/versions/21efe503d07d_initial.py' 2024-03-20T15:46:17,472 adding 'pymlst/data/alembic/wg/env.py' 2024-03-20T15:46:17,474 adding 'pymlst/data/alembic/wg/script.py.mako' 2024-03-20T15:46:17,476 adding 'pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py' 2024-03-20T15:46:17,478 adding 'pymlst/wg/__init__.py' 2024-03-20T15:46:17,482 adding 'pymlst/wg/core.py' 2024-03-20T15:46:17,484 adding 'pymlst/wg/extractors.py' 2024-03-20T15:46:17,486 adding 'pymlst/wg/model.py' 2024-03-20T15:46:17,488 adding 'pymlst/wg/commands/__init__.py' 2024-03-20T15:46:17,490 adding 'pymlst/wg/commands/add.py' 2024-03-20T15:46:17,491 adding 'pymlst/wg/commands/add2.py' 2024-03-20T15:46:17,493 adding 'pymlst/wg/commands/create.py' 2024-03-20T15:46:17,495 adding 'pymlst/wg/commands/distance.py' 2024-03-20T15:46:17,496 adding 'pymlst/wg/commands/gene.py' 2024-03-20T15:46:17,498 adding 'pymlst/wg/commands/import.py' 2024-03-20T15:46:17,500 adding 'pymlst/wg/commands/mlst.py' 2024-03-20T15:46:17,501 adding 'pymlst/wg/commands/msa.py' 2024-03-20T15:46:17,503 adding 'pymlst/wg/commands/recombination.py' 2024-03-20T15:46:17,504 adding 'pymlst/wg/commands/remove.py' 2024-03-20T15:46:17,506 adding 'pymlst/wg/commands/sequence.py' 2024-03-20T15:46:17,508 adding 'pymlst/wg/commands/stats.py' 2024-03-20T15:46:17,509 adding 'pymlst/wg/commands/strain.py' 2024-03-20T15:46:17,511 adding 'pymlst/wg/commands/subgraph.py' 2024-03-20T15:46:17,512 adding 'PyMLST-2.1.6.dist-info/LICENSE' 2024-03-20T15:46:17,514 adding 'PyMLST-2.1.6.dist-info/METADATA' 2024-03-20T15:46:17,515 adding 'PyMLST-2.1.6.dist-info/WHEEL' 2024-03-20T15:46:17,517 adding 'PyMLST-2.1.6.dist-info/entry_points.txt' 2024-03-20T15:46:17,518 adding 'PyMLST-2.1.6.dist-info/top_level.txt' 2024-03-20T15:46:17,520 adding 'PyMLST-2.1.6.dist-info/RECORD' 2024-03-20T15:46:17,523 removing build/bdist.linux-armv7l/wheel 2024-03-20T15:46:17,650 Building wheel for pymlst (setup.py): finished with status 'done' 2024-03-20T15:46:17,653 Created wheel for pymlst: filename=PyMLST-2.1.6-py3-none-any.whl size=55357 sha256=ece835bc63448a03352c031050db6b7df4b52e97b6937f9ec14af3dc2c362727 2024-03-20T15:46:17,655 Stored in directory: /tmp/pip-ephem-wheel-cache-w53qnwr3/wheels/aa/32/b0/e36f5187b3f0f2c49a6e27e4370dbcfec336df1fccc3242b3f 2024-03-20T15:46:17,666 Successfully built pymlst 2024-03-20T15:46:17,671 Removed build tracker: '/tmp/pip-build-tracker-umhtog3a'