2024-03-20T20:00:04,792 Created temporary directory: /tmp/pip-build-tracker-hjunqlxf 2024-03-20T20:00:04,793 Initialized build tracking at /tmp/pip-build-tracker-hjunqlxf 2024-03-20T20:00:04,793 Created build tracker: /tmp/pip-build-tracker-hjunqlxf 2024-03-20T20:00:04,794 Entered build tracker: /tmp/pip-build-tracker-hjunqlxf 2024-03-20T20:00:04,795 Created temporary directory: /tmp/pip-wheel-v8enje8b 2024-03-20T20:00:04,798 Created temporary directory: /tmp/pip-ephem-wheel-cache-0xs7yysd 2024-03-20T20:00:04,822 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T20:00:04,825 2 location(s) to search for versions of scarcc: 2024-03-20T20:00:04,825 * https://pypi.org/simple/scarcc/ 2024-03-20T20:00:04,825 * https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:00:04,826 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-20T20:00:04,827 Getting page https://pypi.org/simple/scarcc/ 2024-03-20T20:00:04,828 Found index url https://pypi.org/simple/ 2024-03-20T20:00:05,046 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-20T20:00:05,048 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-20T20:00:05,049 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-20T20:00:05,050 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-20T20:00:05,050 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:00:05,051 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-20T20:00:05,052 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:00:05,053 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-03-20T20:00:05,054 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:00:05,054 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-03-20T20:00:05,055 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:00:05,056 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:00:05,057 Found index url https://www.piwheels.org/simple/ 2024-03-20T20:00:05,252 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-20T20:00:05,253 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:00:05,254 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-20T20:00:05,260 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:00:05,261 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-20T20:00:05,279 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-20T20:00:05,297 Collecting scarcc==0.0.23 2024-03-20T20:00:05,299 Created temporary directory: /tmp/pip-unpack-ejyipjo8 2024-03-20T20:00:05,556 Downloading scarcc-0.0.23.tar.gz (50 kB) 2024-03-20T20:00:05,744 Added scarcc==0.0.23 from https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz to build tracker '/tmp/pip-build-tracker-hjunqlxf' 2024-03-20T20:00:05,749 Created temporary directory: /tmp/pip-build-env-3g582aps 2024-03-20T20:00:05,753 Installing build dependencies: started 2024-03-20T20:00:05,754 Running command pip subprocess to install build dependencies 2024-03-20T20:00:06,883 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-20T20:00:07,385 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T20:00:09,096 Collecting setuptools>=40.6.0 2024-03-20T20:00:09,606 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-20T20:00:09,863 Collecting wheel 2024-03-20T20:00:10,220 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-20T20:00:12,824 Installing collected packages: wheel, setuptools 2024-03-20T20:00:13,045 Creating /tmp/pip-build-env-3g582aps/overlay/local/bin 2024-03-20T20:00:13,048 changing mode of /tmp/pip-build-env-3g582aps/overlay/local/bin/wheel to 755 2024-03-20T20:00:15,279 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-20T20:00:15,770 Installing build dependencies: finished with status 'done' 2024-03-20T20:00:15,773 Getting requirements to build wheel: started 2024-03-20T20:00:15,774 Running command Getting requirements to build wheel 2024-03-20T20:00:16,288 running egg_info 2024-03-20T20:00:16,292 writing src/scarcc.egg-info/PKG-INFO 2024-03-20T20:00:16,294 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-20T20:00:16,296 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-20T20:00:16,298 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-20T20:00:16,330 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:16,333 adding license file 'LICENSE' 2024-03-20T20:00:16,337 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:16,413 Getting requirements to build wheel: finished with status 'done' 2024-03-20T20:00:16,422 Created temporary directory: /tmp/pip-modern-metadata-hacmnwzu 2024-03-20T20:00:16,424 Preparing metadata (pyproject.toml): started 2024-03-20T20:00:16,425 Running command Preparing metadata (pyproject.toml) 2024-03-20T20:00:16,915 running dist_info 2024-03-20T20:00:16,920 creating /tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info 2024-03-20T20:00:16,924 writing /tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/PKG-INFO 2024-03-20T20:00:16,927 writing dependency_links to /tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/dependency_links.txt 2024-03-20T20:00:16,929 writing requirements to /tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/requires.txt 2024-03-20T20:00:16,930 writing top-level names to /tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/top_level.txt 2024-03-20T20:00:16,932 writing manifest file '/tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:16,960 reading manifest file '/tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:16,962 adding license file 'LICENSE' 2024-03-20T20:00:16,965 writing manifest file '/tmp/pip-modern-metadata-hacmnwzu/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:16,966 creating '/tmp/pip-modern-metadata-hacmnwzu/scarcc-0.0.23.dist-info' 2024-03-20T20:00:17,147 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-20T20:00:17,151 Source in /tmp/pip-wheel-v8enje8b/scarcc_335dcf412d7c4bfea60546d78cc775af has version 0.0.23, which satisfies requirement scarcc==0.0.23 from https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz 2024-03-20T20:00:17,152 Removed scarcc==0.0.23 from https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz from build tracker '/tmp/pip-build-tracker-hjunqlxf' 2024-03-20T20:00:17,157 Created temporary directory: /tmp/pip-unpack-y1asmymu 2024-03-20T20:00:17,158 Created temporary directory: /tmp/pip-unpack-z2aj1svh 2024-03-20T20:00:17,165 Building wheels for collected packages: scarcc 2024-03-20T20:00:17,169 Created temporary directory: /tmp/pip-wheel-afn1pkfi 2024-03-20T20:00:17,170 Destination directory: /tmp/pip-wheel-afn1pkfi 2024-03-20T20:00:17,172 Building wheel for scarcc (pyproject.toml): started 2024-03-20T20:00:17,173 Running command Building wheel for scarcc (pyproject.toml) 2024-03-20T20:00:17,704 running bdist_wheel 2024-03-20T20:00:17,744 running build 2024-03-20T20:00:17,745 running build_py 2024-03-20T20:00:17,751 creating build 2024-03-20T20:00:17,752 creating build/lib 2024-03-20T20:00:17,752 creating build/lib/scarcc 2024-03-20T20:00:17,754 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-20T20:00:17,756 creating build/lib/scarcc/preparation 2024-03-20T20:00:17,757 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-20T20:00:17,759 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-20T20:00:17,761 creating build/lib/scarcc/utils 2024-03-20T20:00:17,762 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-20T20:00:17,764 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-20T20:00:17,766 creating build/lib/scarcc/sim_engine 2024-03-20T20:00:17,767 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-20T20:00:17,769 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-20T20:00:17,771 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-20T20:00:17,773 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-20T20:00:17,774 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-20T20:00:17,777 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-20T20:00:17,779 creating build/lib/scarcc/data_analysis 2024-03-20T20:00:17,780 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-20T20:00:17,782 creating build/lib/scarcc/preparation/perturbation 2024-03-20T20:00:17,783 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-20T20:00:17,785 creating build/lib/scarcc/preparation/target_gene 2024-03-20T20:00:17,786 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-20T20:00:17,788 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-20T20:00:17,790 creating build/lib/scarcc/preparation/metabolic_model 2024-03-20T20:00:17,791 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-20T20:00:17,793 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-20T20:00:17,795 creating build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,796 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,798 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,800 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,802 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,803 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,805 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,808 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,809 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,811 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,814 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,815 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,817 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,819 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,821 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,823 creating build/lib/scarcc/data_analysis/flux 2024-03-20T20:00:17,824 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:00:17,826 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:00:17,828 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:00:17,830 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:00:17,831 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:00:17,834 creating build/lib/scarcc/data_analysis/plot 2024-03-20T20:00:17,835 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:00:17,837 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:00:17,839 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:00:17,841 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:00:17,843 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:00:17,845 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T20:00:17,846 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T20:00:17,848 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T20:00:17,849 creating build/lib/scarcc/data_analysis/growth 2024-03-20T20:00:17,850 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:00:17,852 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:00:17,855 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:00:17,857 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:00:17,859 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:00:17,881 installing to build/bdist.linux-armv7l/wheel 2024-03-20T20:00:17,882 running install 2024-03-20T20:00:17,905 running install_lib 2024-03-20T20:00:17,911 creating build/bdist.linux-armv7l 2024-03-20T20:00:17,912 creating build/bdist.linux-armv7l/wheel 2024-03-20T20:00:17,913 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-20T20:00:17,914 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T20:00:17,916 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-20T20:00:17,917 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,918 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,920 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,922 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:00:17,925 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,925 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,928 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,930 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,932 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,935 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:00:17,937 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-20T20:00:17,939 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T20:00:17,941 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T20:00:17,942 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T20:00:17,944 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T20:00:17,946 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T20:00:17,948 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T20:00:17,949 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T20:00:17,951 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T20:00:17,953 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,954 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,957 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,959 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,961 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:00:17,963 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T20:00:17,964 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T20:00:17,966 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T20:00:17,968 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-20T20:00:17,970 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,971 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,973 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,975 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,977 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,979 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,981 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:00:17,983 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-20T20:00:17,985 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:00:17,986 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:00:17,988 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:00:17,989 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:00:17,991 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:00:17,993 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:00:17,996 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:00:17,997 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:00:17,999 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:00:18,001 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:00:18,003 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:00:18,005 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:00:18,007 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T20:00:18,008 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T20:00:18,010 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T20:00:18,011 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-20T20:00:18,014 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:00:18,015 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:00:18,017 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:00:18,019 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:00:18,021 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:00:18,023 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:00:18,024 running install_egg_info 2024-03-20T20:00:18,034 running egg_info 2024-03-20T20:00:18,039 writing src/scarcc.egg-info/PKG-INFO 2024-03-20T20:00:18,041 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-20T20:00:18,042 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-20T20:00:18,043 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-20T20:00:18,061 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:18,064 adding license file 'LICENSE' 2024-03-20T20:00:18,068 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:00:18,069 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.0.23-py3.11.egg-info 2024-03-20T20:00:18,079 running install_scripts 2024-03-20T20:00:18,092 creating build/bdist.linux-armv7l/wheel/scarcc-0.0.23.dist-info/WHEEL 2024-03-20T20:00:18,094 creating '/tmp/pip-wheel-afn1pkfi/.tmp-9iotmyj6/scarcc-0.0.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-20T20:00:18,097 adding 'scarcc/__init__.py' 2024-03-20T20:00:18,098 adding 'scarcc/data_analysis/__init__.py' 2024-03-20T20:00:18,100 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-20T20:00:18,101 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-20T20:00:18,103 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-20T20:00:18,105 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-20T20:00:18,106 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-20T20:00:18,108 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-20T20:00:18,110 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-20T20:00:18,112 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-20T20:00:18,114 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-20T20:00:18,115 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-20T20:00:18,117 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-20T20:00:18,118 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-20T20:00:18,120 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-20T20:00:18,121 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-20T20:00:18,123 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-20T20:00:18,124 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-20T20:00:18,125 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-20T20:00:18,127 adding 'scarcc/preparation/__init__.py' 2024-03-20T20:00:18,128 adding 'scarcc/preparation/find_directory.py' 2024-03-20T20:00:18,130 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-20T20:00:18,131 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-20T20:00:18,133 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-20T20:00:18,135 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-20T20:00:18,136 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-20T20:00:18,137 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-20T20:00:18,139 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-20T20:00:18,140 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-20T20:00:18,142 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-20T20:00:18,144 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-20T20:00:18,146 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-20T20:00:18,148 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-20T20:00:18,150 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-20T20:00:18,151 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-20T20:00:18,153 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-20T20:00:18,154 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-20T20:00:18,155 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-20T20:00:18,157 adding 'scarcc/sim_engine/__init__.py' 2024-03-20T20:00:18,158 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-20T20:00:18,160 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-20T20:00:18,161 adding 'scarcc/sim_engine/output.py' 2024-03-20T20:00:18,163 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-20T20:00:18,165 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-20T20:00:18,166 adding 'scarcc/utils/__init__.py' 2024-03-20T20:00:18,167 adding 'scarcc/utils/util.py' 2024-03-20T20:00:18,169 adding 'scarcc-0.0.23.dist-info/LICENSE' 2024-03-20T20:00:18,170 adding 'scarcc-0.0.23.dist-info/METADATA' 2024-03-20T20:00:18,171 adding 'scarcc-0.0.23.dist-info/WHEEL' 2024-03-20T20:00:18,172 adding 'scarcc-0.0.23.dist-info/top_level.txt' 2024-03-20T20:00:18,174 adding 'scarcc-0.0.23.dist-info/RECORD' 2024-03-20T20:00:18,176 removing build/bdist.linux-armv7l/wheel 2024-03-20T20:00:18,281 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-20T20:00:18,287 Created wheel for scarcc: filename=scarcc-0.0.23-py3-none-any.whl size=62332 sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 2024-03-20T20:00:18,288 Stored in directory: /tmp/pip-ephem-wheel-cache-0xs7yysd/wheels/b5/14/09/1fbb4725ce2bd3a953ac5cefe75e48b40f808f4e9634071a12 2024-03-20T20:00:18,299 Successfully built scarcc 2024-03-20T20:00:18,304 Removed build tracker: '/tmp/pip-build-tracker-hjunqlxf'