2024-03-20T20:33:30,865 Created temporary directory: /tmp/pip-build-tracker-o8joi1y3 2024-03-20T20:33:30,866 Initialized build tracking at /tmp/pip-build-tracker-o8joi1y3 2024-03-20T20:33:30,866 Created build tracker: /tmp/pip-build-tracker-o8joi1y3 2024-03-20T20:33:30,867 Entered build tracker: /tmp/pip-build-tracker-o8joi1y3 2024-03-20T20:33:30,868 Created temporary directory: /tmp/pip-wheel-x71bauon 2024-03-20T20:33:30,871 Created temporary directory: /tmp/pip-ephem-wheel-cache-4jdm9n5b 2024-03-20T20:33:30,893 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T20:33:30,896 2 location(s) to search for versions of scarcc: 2024-03-20T20:33:30,896 * https://pypi.org/simple/scarcc/ 2024-03-20T20:33:30,896 * https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:33:30,897 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-20T20:33:30,897 Getting page https://pypi.org/simple/scarcc/ 2024-03-20T20:33:30,899 Found index url https://pypi.org/simple/ 2024-03-20T20:33:31,039 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-20T20:33:31,042 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-20T20:33:31,042 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-20T20:33:31,043 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-20T20:33:31,043 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:33:31,044 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-20T20:33:31,045 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:33:31,046 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-03-20T20:33:31,047 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:33:31,048 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-03-20T20:33:31,048 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:33:31,049 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:33:31,051 Found index url https://www.piwheels.org/simple/ 2024-03-20T20:33:31,301 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-20T20:33:31,303 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:33:31,304 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-20T20:33:31,304 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-20T20:33:31,305 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-20T20:33:31,306 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-20T20:33:31,324 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-20T20:33:31,342 Collecting scarcc==0.1.0 2024-03-20T20:33:31,344 Created temporary directory: /tmp/pip-unpack-n23mwi5b 2024-03-20T20:33:31,562 Downloading scarcc-0.1.0.tar.gz (50 kB) 2024-03-20T20:33:31,725 Added scarcc==0.1.0 from https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-o8joi1y3' 2024-03-20T20:33:31,730 Created temporary directory: /tmp/pip-build-env-lvo_plbh 2024-03-20T20:33:31,734 Installing build dependencies: started 2024-03-20T20:33:31,736 Running command pip subprocess to install build dependencies 2024-03-20T20:33:33,141 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-20T20:33:33,895 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-20T20:33:35,570 Collecting setuptools>=40.6.0 2024-03-20T20:33:38,285 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-20T20:33:38,577 Collecting wheel 2024-03-20T20:33:41,897 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-20T20:33:44,817 Installing collected packages: wheel, setuptools 2024-03-20T20:33:45,442 Creating /tmp/pip-build-env-lvo_plbh/overlay/local/bin 2024-03-20T20:33:45,444 changing mode of /tmp/pip-build-env-lvo_plbh/overlay/local/bin/wheel to 755 2024-03-20T20:33:48,667 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-20T20:33:49,248 Installing build dependencies: finished with status 'done' 2024-03-20T20:33:49,251 Getting requirements to build wheel: started 2024-03-20T20:33:49,253 Running command Getting requirements to build wheel 2024-03-20T20:33:49,784 running egg_info 2024-03-20T20:33:49,788 writing src/scarcc.egg-info/PKG-INFO 2024-03-20T20:33:49,791 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-20T20:33:49,793 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-20T20:33:49,794 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-20T20:33:49,828 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:49,831 adding license file 'LICENSE' 2024-03-20T20:33:49,835 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:49,912 Getting requirements to build wheel: finished with status 'done' 2024-03-20T20:33:49,921 Created temporary directory: /tmp/pip-modern-metadata-bdiwjez5 2024-03-20T20:33:49,923 Preparing metadata (pyproject.toml): started 2024-03-20T20:33:49,924 Running command Preparing metadata (pyproject.toml) 2024-03-20T20:33:50,429 running dist_info 2024-03-20T20:33:50,434 creating /tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info 2024-03-20T20:33:50,438 writing /tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/PKG-INFO 2024-03-20T20:33:50,441 writing dependency_links to /tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/dependency_links.txt 2024-03-20T20:33:50,443 writing requirements to /tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/requires.txt 2024-03-20T20:33:50,444 writing top-level names to /tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/top_level.txt 2024-03-20T20:33:50,446 writing manifest file '/tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:50,474 reading manifest file '/tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:50,476 adding license file 'LICENSE' 2024-03-20T20:33:50,479 writing manifest file '/tmp/pip-modern-metadata-bdiwjez5/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:50,480 creating '/tmp/pip-modern-metadata-bdiwjez5/scarcc-0.1.0.dist-info' 2024-03-20T20:33:50,665 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-20T20:33:50,669 Source in /tmp/pip-wheel-x71bauon/scarcc_ba1eb68ec4b440a0b54cd817081dbf29 has version 0.1.0, which satisfies requirement scarcc==0.1.0 from https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz 2024-03-20T20:33:50,670 Removed scarcc==0.1.0 from https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-o8joi1y3' 2024-03-20T20:33:50,675 Created temporary directory: /tmp/pip-unpack-hgkgnvu4 2024-03-20T20:33:50,676 Created temporary directory: /tmp/pip-unpack-_7ymm182 2024-03-20T20:33:50,683 Building wheels for collected packages: scarcc 2024-03-20T20:33:50,687 Created temporary directory: /tmp/pip-wheel-44daenzw 2024-03-20T20:33:50,687 Destination directory: /tmp/pip-wheel-44daenzw 2024-03-20T20:33:50,689 Building wheel for scarcc (pyproject.toml): started 2024-03-20T20:33:50,690 Running command Building wheel for scarcc (pyproject.toml) 2024-03-20T20:33:51,223 running bdist_wheel 2024-03-20T20:33:51,264 running build 2024-03-20T20:33:51,265 running build_py 2024-03-20T20:33:51,271 creating build 2024-03-20T20:33:51,272 creating build/lib 2024-03-20T20:33:51,273 creating build/lib/scarcc 2024-03-20T20:33:51,274 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-20T20:33:51,277 creating build/lib/scarcc/utils 2024-03-20T20:33:51,278 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-20T20:33:51,279 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-20T20:33:51,282 creating build/lib/scarcc/preparation 2024-03-20T20:33:51,283 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-20T20:33:51,284 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-20T20:33:51,287 creating build/lib/scarcc/sim_engine 2024-03-20T20:33:51,288 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-20T20:33:51,289 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-20T20:33:51,292 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-20T20:33:51,295 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-20T20:33:51,297 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-20T20:33:51,299 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-20T20:33:51,301 creating build/lib/scarcc/data_analysis 2024-03-20T20:33:51,302 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-20T20:33:51,304 creating build/lib/scarcc/preparation/target_gene 2024-03-20T20:33:51,305 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-20T20:33:51,307 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-20T20:33:51,310 creating build/lib/scarcc/preparation/metabolic_model 2024-03-20T20:33:51,311 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-20T20:33:51,313 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-20T20:33:51,316 creating build/lib/scarcc/preparation/perturbation 2024-03-20T20:33:51,317 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-20T20:33:51,321 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,322 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,323 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,325 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,327 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,330 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,331 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,333 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,335 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,338 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,340 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,344 creating build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,345 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,347 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,349 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,351 creating build/lib/scarcc/data_analysis/growth 2024-03-20T20:33:51,352 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:33:51,354 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:33:51,356 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:33:51,358 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:33:51,361 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-20T20:33:51,364 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T20:33:51,365 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T20:33:51,367 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-20T20:33:51,370 creating build/lib/scarcc/data_analysis/flux 2024-03-20T20:33:51,371 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:33:51,372 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:33:51,375 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:33:51,376 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:33:51,379 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-20T20:33:51,382 creating build/lib/scarcc/data_analysis/plot 2024-03-20T20:33:51,383 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:33:51,385 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:33:51,387 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:33:51,389 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:33:51,391 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-20T20:33:51,415 installing to build/bdist.linux-armv7l/wheel 2024-03-20T20:33:51,415 running install 2024-03-20T20:33:51,439 running install_lib 2024-03-20T20:33:51,446 creating build/bdist.linux-armv7l 2024-03-20T20:33:51,447 creating build/bdist.linux-armv7l/wheel 2024-03-20T20:33:51,448 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-20T20:33:51,449 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-20T20:33:51,452 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T20:33:51,453 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T20:33:51,455 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-20T20:33:51,457 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T20:33:51,459 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T20:33:51,460 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T20:33:51,462 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-20T20:33:51,464 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T20:33:51,466 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T20:33:51,468 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T20:33:51,471 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,472 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,474 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,477 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,480 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-20T20:33:51,484 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-20T20:33:51,489 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-20T20:33:51,711 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-20T20:33:51,712 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-20T20:33:51,714 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,715 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,717 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,720 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,722 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,725 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-20T20:33:51,728 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,729 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,731 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,733 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-20T20:33:51,735 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,736 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,737 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,739 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,741 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,743 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,745 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-20T20:33:51,747 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-20T20:33:51,749 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:33:51,750 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:33:51,752 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:33:51,753 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:33:51,755 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:33:51,758 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-20T20:33:51,760 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-20T20:33:51,762 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T20:33:51,763 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T20:33:51,765 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-20T20:33:51,768 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:33:51,769 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:33:51,770 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:33:51,773 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:33:51,776 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:33:51,781 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-20T20:33:51,785 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:33:51,786 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:33:51,787 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:33:51,789 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:33:51,791 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:33:51,794 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-20T20:33:51,797 running install_egg_info 2024-03-20T20:33:51,809 running egg_info 2024-03-20T20:33:51,812 writing src/scarcc.egg-info/PKG-INFO 2024-03-20T20:33:51,815 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-20T20:33:51,816 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-20T20:33:51,817 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-20T20:33:51,834 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:51,837 adding license file 'LICENSE' 2024-03-20T20:33:51,841 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-20T20:33:51,843 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.0-py3.11.egg-info 2024-03-20T20:33:51,855 running install_scripts 2024-03-20T20:33:51,867 creating build/bdist.linux-armv7l/wheel/scarcc-0.1.0.dist-info/WHEEL 2024-03-20T20:33:51,869 creating '/tmp/pip-wheel-44daenzw/.tmp-1yn3di83/scarcc-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-20T20:33:51,872 adding 'scarcc/__init__.py' 2024-03-20T20:33:51,874 adding 'scarcc/data_analysis/__init__.py' 2024-03-20T20:33:51,875 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-20T20:33:51,876 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-20T20:33:51,878 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-20T20:33:51,880 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-20T20:33:51,881 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-20T20:33:51,883 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-20T20:33:51,885 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-20T20:33:51,887 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-20T20:33:51,889 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-20T20:33:51,890 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-20T20:33:51,892 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-20T20:33:51,893 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-20T20:33:51,895 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-20T20:33:51,896 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-20T20:33:51,898 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-20T20:33:51,899 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-20T20:33:51,900 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-20T20:33:51,902 adding 'scarcc/preparation/__init__.py' 2024-03-20T20:33:51,903 adding 'scarcc/preparation/find_directory.py' 2024-03-20T20:33:51,905 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-20T20:33:51,907 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-20T20:33:51,908 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-20T20:33:51,910 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-20T20:33:51,911 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-20T20:33:51,912 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-20T20:33:51,914 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-20T20:33:51,916 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-20T20:33:51,918 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-20T20:33:51,919 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-20T20:33:51,921 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-20T20:33:51,924 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-20T20:33:51,925 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-20T20:33:51,926 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-20T20:33:51,928 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-20T20:33:51,929 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-20T20:33:51,930 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-20T20:33:51,932 adding 'scarcc/sim_engine/__init__.py' 2024-03-20T20:33:51,933 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-20T20:33:51,935 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-20T20:33:51,936 adding 'scarcc/sim_engine/output.py' 2024-03-20T20:33:51,938 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-20T20:33:51,940 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-20T20:33:51,941 adding 'scarcc/utils/__init__.py' 2024-03-20T20:33:51,943 adding 'scarcc/utils/util.py' 2024-03-20T20:33:51,945 adding 'scarcc-0.1.0.dist-info/LICENSE' 2024-03-20T20:33:51,946 adding 'scarcc-0.1.0.dist-info/METADATA' 2024-03-20T20:33:51,946 adding 'scarcc-0.1.0.dist-info/WHEEL' 2024-03-20T20:33:51,947 adding 'scarcc-0.1.0.dist-info/top_level.txt' 2024-03-20T20:33:51,949 adding 'scarcc-0.1.0.dist-info/RECORD' 2024-03-20T20:33:51,953 removing build/bdist.linux-armv7l/wheel 2024-03-20T20:33:52,064 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-20T20:33:52,072 Created wheel for scarcc: filename=scarcc-0.1.0-py3-none-any.whl size=62356 sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 2024-03-20T20:33:52,074 Stored in directory: /tmp/pip-ephem-wheel-cache-4jdm9n5b/wheels/4a/fc/e3/67b48df8fabc52e0c2b7005f1ab8b30a464df1db8206a11abc 2024-03-20T20:33:52,090 Successfully built scarcc 2024-03-20T20:33:52,098 Removed build tracker: '/tmp/pip-build-tracker-o8joi1y3'