2024-03-21T12:10:50,033 Created temporary directory: /tmp/pip-build-tracker-d_bngdd7 2024-03-21T12:10:50,034 Initialized build tracking at /tmp/pip-build-tracker-d_bngdd7 2024-03-21T12:10:50,035 Created build tracker: /tmp/pip-build-tracker-d_bngdd7 2024-03-21T12:10:50,035 Entered build tracker: /tmp/pip-build-tracker-d_bngdd7 2024-03-21T12:10:50,036 Created temporary directory: /tmp/pip-wheel-qjjpw158 2024-03-21T12:10:50,039 Created temporary directory: /tmp/pip-ephem-wheel-cache-ebfh8xh2 2024-03-21T12:10:50,062 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T12:10:50,065 2 location(s) to search for versions of mitos: 2024-03-21T12:10:50,065 * https://pypi.org/simple/mitos/ 2024-03-21T12:10:50,065 * https://www.piwheels.org/simple/mitos/ 2024-03-21T12:10:50,066 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2024-03-21T12:10:50,067 Getting page https://pypi.org/simple/mitos/ 2024-03-21T12:10:50,068 Found index url https://pypi.org/simple/ 2024-03-21T12:10:50,283 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2024-03-21T12:10:50,289 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2024-03-21T12:10:50,290 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2024-03-21T12:10:50,291 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2024-03-21T12:10:50,291 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2024-03-21T12:10:50,292 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2024-03-21T12:10:50,293 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2024-03-21T12:10:50,293 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2024-03-21T12:10:50,294 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2024-03-21T12:10:50,295 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2024-03-21T12:10:50,296 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2024-03-21T12:10:50,296 Found link https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.2 2024-03-21T12:10:50,297 Found link https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.3 2024-03-21T12:10:50,298 Found link https://files.pythonhosted.org/packages/fc/39/368668a4250e85f2a596f996a4067528a2e13ad69d18404d4dac5ca4118f/mitos-1.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.4 2024-03-21T12:10:50,298 Found link https://files.pythonhosted.org/packages/aa/6d/1bb441bdbf6da2df6d00bafbcc3bcdca90a5ca20c4c66af513b54741a841/mitos-1.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.5 2024-03-21T12:10:50,299 Found link https://files.pythonhosted.org/packages/3a/fa/7f7ad2bc263f9006f3ac6d65bc0644dcff4f36be038e2848d819b55f963e/mitos-1.1.6.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.6 2024-03-21T12:10:50,300 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2024-03-21T12:10:50,301 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2024-03-21T12:10:50,301 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2024-03-21T12:10:50,302 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2024-03-21T12:10:50,302 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2024-03-21T12:10:50,303 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2024-03-21T12:10:50,303 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2024-03-21T12:10:50,304 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2024-03-21T12:10:50,305 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2024-03-21T12:10:50,305 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2024-03-21T12:10:50,306 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2024-03-21T12:10:50,307 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2024-03-21T12:10:50,307 Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3 2024-03-21T12:10:50,308 Found link https://files.pythonhosted.org/packages/ff/1f/af7beaaaa133f2f55cdbfbf5430c0e9a3102b101dd0a8d2c6f22376af56b/mitos-2.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.4 2024-03-21T12:10:50,309 Found link https://files.pythonhosted.org/packages/c9/6d/853d05a3ec8c81c73bb23ba0862ded05aa4c2fdc74cdc796c982c6896476/mitos-2.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.5 2024-03-21T12:10:50,310 Found link https://files.pythonhosted.org/packages/96/9a/97d5e59e6680b450e24d0c3313f112b8818f7d2f6c6fbc90d685cf7fe47c/mitos-2.1.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.6 2024-03-21T12:10:50,310 Found link https://files.pythonhosted.org/packages/ae/13/4befcffdab2028eaed3986939d74736846d66cde1d2c66a464d03a70c860/mitos-2.1.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.7 2024-03-21T12:10:50,311 Found link https://files.pythonhosted.org/packages/2d/87/fa237a6183642f2470b3dfe1273f0dd2a64fd46480cd1c2bc41b05233a63/mitos-2.1.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.8 2024-03-21T12:10:50,312 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2024-03-21T12:10:50,318 Getting page https://www.piwheels.org/simple/mitos/ 2024-03-21T12:10:50,319 Found index url https://www.piwheels.org/simple/ 2024-03-21T12:10:50,991 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2024-03-21T12:10:51,010 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.7-py3-none-any.whl#sha256=d4ac25651e00beb38a546bef9ff493efdfedc7dc904f673b5b079bb056214850 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,011 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.6-py3-none-any.whl#sha256=bed8aeda4eebf1ce891081ec67cf34897f2e5da8800cfb51c78593616a3304ea (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,012 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.5-py3-none-any.whl#sha256=c404e62da7a2d919a7cf0999ba3ce479541d935e38999ed75c09dc9a38f6b6bd (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,013 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.4-py3-none-any.whl#sha256=249c87e42350fbefa1e3281d0e81f795c7710a95303b226bdc818b51615162e0 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,014 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.3-py3-none-any.whl#sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,015 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,016 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,017 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,018 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,019 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,020 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,021 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,022 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,023 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,024 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,025 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,026 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.5-py3-none-any.whl#sha256=ae7a240619a3688130de5e6be1d0c3ee8dbcfaf3aab6f5f193d8485e02dc29df (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,027 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.4-py3-none-any.whl#sha256=94e72cf1eb3cbbe067f3996d78d50a7fe9e91350bbd146f7babf90321ecb9ffc (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,028 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.3-py3-none-any.whl#sha256=92bec0ea93c83f4d494767e69401c1dcc1dd8f562917c3d110ec0a525d142a6a (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,029 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.2-py3-none-any.whl#sha256=b237b128b553848c12c5d387b10a20bbcb734b8672b3bf56fb2f3995e169c03d (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,029 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,030 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,031 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,032 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,033 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,034 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,035 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,036 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2024-03-21T12:10:51,037 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2024-03-21T12:10:51,038 Skipping link: not a file: https://pypi.org/simple/mitos/ 2024-03-21T12:10:51,085 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2024-03-21T12:10:51,103 Collecting mitos==2.1.8 2024-03-21T12:10:51,105 Created temporary directory: /tmp/pip-unpack-c2zzeqqk 2024-03-21T12:10:51,326 Downloading mitos-2.1.8.tar.gz (273 kB) 2024-03-21T12:10:51,616 Added mitos==2.1.8 from https://files.pythonhosted.org/packages/2d/87/fa237a6183642f2470b3dfe1273f0dd2a64fd46480cd1c2bc41b05233a63/mitos-2.1.8.tar.gz to build tracker '/tmp/pip-build-tracker-d_bngdd7' 2024-03-21T12:10:51,618 Running setup.py (path:/tmp/pip-wheel-qjjpw158/mitos_985d68922407462f95532f4950f5928d/setup.py) egg_info for package mitos 2024-03-21T12:10:51,619 Created temporary directory: /tmp/pip-pip-egg-info-z_monnai 2024-03-21T12:10:51,620 Preparing metadata (setup.py): started 2024-03-21T12:10:51,621 Running command python setup.py egg_info 2024-03-21T12:10:52,728 running egg_info 2024-03-21T12:10:52,730 creating /tmp/pip-pip-egg-info-z_monnai/mitos.egg-info 2024-03-21T12:10:52,756 writing /tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/PKG-INFO 2024-03-21T12:10:52,759 writing dependency_links to /tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/dependency_links.txt 2024-03-21T12:10:52,762 writing requirements to /tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/requires.txt 2024-03-21T12:10:52,763 writing top-level names to /tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/top_level.txt 2024-03-21T12:10:52,765 writing manifest file '/tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/SOURCES.txt' 2024-03-21T12:10:52,887 reading manifest file '/tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/SOURCES.txt' 2024-03-21T12:10:52,889 reading manifest template 'MANIFEST.in' 2024-03-21T12:10:52,890 warning: no files found matching 'mitos/codons/gc.prt' 2024-03-21T12:10:52,892 adding license file 'LICENSE' 2024-03-21T12:10:52,895 writing manifest file '/tmp/pip-pip-egg-info-z_monnai/mitos.egg-info/SOURCES.txt' 2024-03-21T12:10:53,004 Preparing metadata (setup.py): finished with status 'done' 2024-03-21T12:10:53,008 Source in /tmp/pip-wheel-qjjpw158/mitos_985d68922407462f95532f4950f5928d has version 2.1.8, which satisfies requirement mitos==2.1.8 from https://files.pythonhosted.org/packages/2d/87/fa237a6183642f2470b3dfe1273f0dd2a64fd46480cd1c2bc41b05233a63/mitos-2.1.8.tar.gz 2024-03-21T12:10:53,010 Removed mitos==2.1.8 from https://files.pythonhosted.org/packages/2d/87/fa237a6183642f2470b3dfe1273f0dd2a64fd46480cd1c2bc41b05233a63/mitos-2.1.8.tar.gz from build tracker '/tmp/pip-build-tracker-d_bngdd7' 2024-03-21T12:10:53,015 Created temporary directory: /tmp/pip-unpack-35bq3hu5 2024-03-21T12:10:53,016 Created temporary directory: /tmp/pip-unpack-n0ui2q3f 2024-03-21T12:10:53,021 Building wheels for collected packages: mitos 2024-03-21T12:10:53,025 Created temporary directory: /tmp/pip-wheel-4p1u0r8s 2024-03-21T12:10:53,026 Building wheel for mitos (setup.py): started 2024-03-21T12:10:53,027 Destination directory: /tmp/pip-wheel-4p1u0r8s 2024-03-21T12:10:53,028 Running command python setup.py bdist_wheel 2024-03-21T12:10:54,075 running bdist_wheel 2024-03-21T12:10:54,171 running build 2024-03-21T12:10:54,172 running build_py 2024-03-21T12:10:54,199 creating build 2024-03-21T12:10:54,200 creating build/lib 2024-03-21T12:10:54,201 creating build/lib/mitos 2024-03-21T12:10:54,202 copying mitos/trnascan_parse_separate.py -> build/lib/mitos 2024-03-21T12:10:54,205 copying mitos/mitos-extension2.py -> build/lib/mitos 2024-03-21T12:10:54,207 copying mitos/trnadist.py -> build/lib/mitos 2024-03-21T12:10:54,211 copying mitos/trna-cm.py -> build/lib/mitos 2024-03-21T12:10:54,216 copying mitos/names.py -> build/lib/mitos 2024-03-21T12:10:54,218 copying mitos/inihit.py -> build/lib/mitos 2024-03-21T12:10:54,221 copying mitos/codoncount.py -> build/lib/mitos 2024-03-21T12:10:54,223 copying mitos/__init__.py -> build/lib/mitos 2024-03-21T12:10:54,225 copying mitos/ogre-geneorder.py -> build/lib/mitos 2024-03-21T12:10:54,227 copying mitos/skew.py -> build/lib/mitos 2024-03-21T12:10:54,230 copying mitos/merge_results.py -> build/lib/mitos 2024-03-21T12:10:54,232 copying mitos/mitos-extension.py -> build/lib/mitos 2024-03-21T12:10:54,235 copying mitos/mumcmp.py -> build/lib/mitos 2024-03-21T12:10:54,237 copying mitos/removegene.py -> build/lib/mitos 2024-03-21T12:10:54,239 copying mitos/booreparser.py -> build/lib/mitos 2024-03-21T12:10:54,243 copying mitos/convert_tree.py -> build/lib/mitos 2024-03-21T12:10:54,246 copying mitos/get-wancy.py -> build/lib/mitos 2024-03-21T12:10:54,248 copying mitos/cmsearch_parse_separate.py -> build/lib/mitos 2024-03-21T12:10:54,250 copying mitos/CONFIG.py -> build/lib/mitos 2024-03-21T12:10:54,253 copying mitos/create_prot_fasta.py -> build/lib/mitos 2024-03-21T12:10:54,256 copying mitos/update-mitolog.py -> build/lib/mitos 2024-03-21T12:10:54,259 copying mitos/mitoloc.py -> build/lib/mitos 2024-03-21T12:10:54,262 copying mitos/mitoch_revisions.py -> build/lib/mitos 2024-03-21T12:10:54,265 copying mitos/prepareFiles.py -> build/lib/mitos 2024-03-21T12:10:54,268 creating build/lib/mitos/util 2024-03-21T12:10:54,269 copying mitos/util/__init__.py -> build/lib/mitos/util 2024-03-21T12:10:54,271 creating build/lib/mitos/tax 2024-03-21T12:10:54,273 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2024-03-21T12:10:54,275 creating build/lib/mitos/mito 2024-03-21T12:10:54,277 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2024-03-21T12:10:54,280 creating build/lib/mitos/draw 2024-03-21T12:10:54,282 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2024-03-21T12:10:54,285 creating build/lib/mitos/sequence 2024-03-21T12:10:54,287 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2024-03-21T12:10:54,290 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2024-03-21T12:10:54,294 creating build/lib/mitos/mitfi 2024-03-21T12:10:54,295 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2024-03-21T12:10:54,300 creating build/lib/mitos/protfeat 2024-03-21T12:10:54,301 copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat 2024-03-21T12:10:54,306 creating build/lib/mitos/mitofile 2024-03-21T12:10:54,307 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2024-03-21T12:10:54,310 creating build/lib/mitos/rna 2024-03-21T12:10:54,312 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2024-03-21T12:10:54,319 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2024-03-21T12:10:54,322 copying mitos/rna/forester.py -> build/lib/mitos/rna 2024-03-21T12:10:54,324 creating build/lib/mitos/update 2024-03-21T12:10:54,326 copying mitos/update/__init__.py -> build/lib/mitos/update 2024-03-21T12:10:54,329 creating build/lib/mitos/tbl 2024-03-21T12:10:54,331 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2024-03-21T12:10:54,334 creating build/lib/mitos/webserver 2024-03-21T12:10:54,335 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2024-03-21T12:10:54,338 creating build/lib/mitos/extprog 2024-03-21T12:10:54,340 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2024-03-21T12:10:54,344 creating build/lib/mitos/blast 2024-03-21T12:10:54,345 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2024-03-21T12:10:54,351 creating build/lib/mitos/gfffile 2024-03-21T12:10:54,352 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2024-03-21T12:10:54,355 creating build/lib/mitos/trna 2024-03-21T12:10:54,356 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2024-03-21T12:10:54,359 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2024-03-21T12:10:54,362 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2024-03-21T12:10:54,365 creating build/lib/mitos/feature 2024-03-21T12:10:54,366 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2024-03-21T12:10:54,370 creating build/lib/mitos/mergefeature 2024-03-21T12:10:54,371 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2024-03-21T12:10:54,375 creating build/lib/mitos/bedfile 2024-03-21T12:10:54,376 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2024-03-21T12:10:54,379 creating build/lib/mitos/gb 2024-03-21T12:10:54,380 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2024-03-21T12:10:54,384 copying mitos/gb/unify.py -> build/lib/mitos/gb 2024-03-21T12:10:54,386 running egg_info 2024-03-21T12:10:54,443 writing mitos.egg-info/PKG-INFO 2024-03-21T12:10:54,447 writing dependency_links to mitos.egg-info/dependency_links.txt 2024-03-21T12:10:54,448 writing requirements to mitos.egg-info/requires.txt 2024-03-21T12:10:54,450 writing top-level names to mitos.egg-info/top_level.txt 2024-03-21T12:10:54,492 reading manifest file 'mitos.egg-info/SOURCES.txt' 2024-03-21T12:10:54,496 reading manifest template 'MANIFEST.in' 2024-03-21T12:10:54,497 warning: no files found matching 'mitos/codons/gc.prt' 2024-03-21T12:10:54,499 adding license file 'LICENSE' 2024-03-21T12:10:54,504 writing manifest file 'mitos.egg-info/SOURCES.txt' 2024-03-21T12:10:54,507 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.mitfi.parser' is absent from the `packages` configuration. 2024-03-21T12:10:54,508 !! 2024-03-21T12:10:54,509 ******************************************************************************** 2024-03-21T12:10:54,509 ############################ 2024-03-21T12:10:54,510 # Package would be ignored # 2024-03-21T12:10:54,510 ############################ 2024-03-21T12:10:54,510 Python recognizes 'mitos.mitfi.parser' as an importable package[^1], 2024-03-21T12:10:54,511 but it is absent from setuptools' `packages` configuration. 2024-03-21T12:10:54,512 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T12:10:54,512 package, please make sure that 'mitos.mitfi.parser' is explicitly added 2024-03-21T12:10:54,513 to the `packages` configuration field. 2024-03-21T12:10:54,514 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T12:10:54,514 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T12:10:54,515 instead of `find_packages(...)`/`find:`). 2024-03-21T12:10:54,516 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T12:10:54,517 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T12:10:54,518 If you don't want 'mitos.mitfi.parser' to be distributed and are 2024-03-21T12:10:54,519 already explicitly excluding 'mitos.mitfi.parser' via 2024-03-21T12:10:54,519 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T12:10:54,520 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T12:10:54,520 combination with a more fine grained `package-data` configuration. 2024-03-21T12:10:54,521 You can read more about "package data files" on setuptools documentation page: 2024-03-21T12:10:54,522 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T12:10:54,524 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T12:10:54,525 even if it does not contain any `.py` files. 2024-03-21T12:10:54,525 On the other hand, currently there is no concept of package data 2024-03-21T12:10:54,526 directory, all directories are treated like packages. 2024-03-21T12:10:54,526 ******************************************************************************** 2024-03-21T12:10:54,528 !! 2024-03-21T12:10:54,528 check.warn(importable) 2024-03-21T12:10:54,534 copying mitos/plotprot.R -> build/lib/mitos 2024-03-21T12:10:54,539 copying mitos/plotrna.R -> build/lib/mitos 2024-03-21T12:10:54,542 copying mitos/plotstst.R -> build/lib/mitos 2024-03-21T12:10:54,548 creating build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,549 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,552 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,555 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,558 copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,561 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,564 copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,567 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2024-03-21T12:10:54,570 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2024-03-21T12:10:54,573 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2024-03-21T12:10:54,575 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2024-03-21T12:10:54,578 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2024-03-21T12:10:54,580 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2024-03-21T12:10:54,582 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2024-03-21T12:10:54,591 running build_scripts 2024-03-21T12:10:54,591 creating build/scripts-3.11 2024-03-21T12:10:54,592 copying and adjusting runmitos.py -> build/scripts-3.11 2024-03-21T12:10:54,596 copying and adjusting drawmitos.py -> build/scripts-3.11 2024-03-21T12:10:54,598 copying and adjusting analyse.py -> build/scripts-3.11 2024-03-21T12:10:54,600 copying and adjusting gcpp.py -> build/scripts-3.11 2024-03-21T12:10:54,602 copying and adjusting geneorder.py -> build/scripts-3.11 2024-03-21T12:10:54,604 copying and adjusting getfeatures.py -> build/scripts-3.11 2024-03-21T12:10:54,606 copying and adjusting getinfo.py -> build/scripts-3.11 2024-03-21T12:10:54,607 copying and adjusting refseqsplit.py -> build/scripts-3.11 2024-03-21T12:10:54,609 copying and adjusting subseq.py -> build/scripts-3.11 2024-03-21T12:10:54,611 copying and adjusting taxtree.py -> build/scripts-3.11 2024-03-21T12:10:54,613 copying update-blastdb.py -> build/scripts-3.11 2024-03-21T12:10:54,615 copying mitos/plotprot.R -> build/scripts-3.11 2024-03-21T12:10:54,617 copying mitos/plotstst.R -> build/scripts-3.11 2024-03-21T12:10:54,620 copying mitos/plotrna.R -> build/scripts-3.11 2024-03-21T12:10:54,621 changing mode of build/scripts-3.11/runmitos.py from 644 to 755 2024-03-21T12:10:54,622 changing mode of build/scripts-3.11/drawmitos.py from 644 to 755 2024-03-21T12:10:54,622 changing mode of build/scripts-3.11/analyse.py from 644 to 755 2024-03-21T12:10:54,623 changing mode of build/scripts-3.11/gcpp.py from 644 to 755 2024-03-21T12:10:54,623 changing mode of build/scripts-3.11/geneorder.py from 644 to 755 2024-03-21T12:10:54,624 changing mode of build/scripts-3.11/getfeatures.py from 644 to 755 2024-03-21T12:10:54,624 changing mode of build/scripts-3.11/getinfo.py from 644 to 755 2024-03-21T12:10:54,625 changing mode of build/scripts-3.11/refseqsplit.py from 644 to 755 2024-03-21T12:10:54,625 changing mode of build/scripts-3.11/subseq.py from 644 to 755 2024-03-21T12:10:54,626 changing mode of build/scripts-3.11/taxtree.py from 644 to 755 2024-03-21T12:10:54,627 changing mode of build/scripts-3.11/update-blastdb.py from 644 to 755 2024-03-21T12:10:54,653 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-21T12:10:54,654 !! 2024-03-21T12:10:54,655 ******************************************************************************** 2024-03-21T12:10:54,655 Please avoid running ``setup.py`` directly. 2024-03-21T12:10:54,656 Instead, use pypa/build, pypa/installer or other 2024-03-21T12:10:54,657 standards-based tools. 2024-03-21T12:10:54,658 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-21T12:10:54,658 ******************************************************************************** 2024-03-21T12:10:54,660 !! 2024-03-21T12:10:54,660 self.initialize_options() 2024-03-21T12:10:54,679 installing to build/bdist.linux-armv7l/wheel 2024-03-21T12:10:54,680 running install 2024-03-21T12:10:54,703 running install_lib 2024-03-21T12:10:54,738 creating build/bdist.linux-armv7l 2024-03-21T12:10:54,739 creating build/bdist.linux-armv7l/wheel 2024-03-21T12:10:54,741 creating build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,743 creating build/bdist.linux-armv7l/wheel/mitos/util 2024-03-21T12:10:54,744 copying build/lib/mitos/util/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/util 2024-03-21T12:10:54,747 copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,750 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,754 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,757 creating build/bdist.linux-armv7l/wheel/mitos/tax 2024-03-21T12:10:54,758 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2024-03-21T12:10:54,761 creating build/bdist.linux-armv7l/wheel/mitos/mito 2024-03-21T12:10:54,762 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2024-03-21T12:10:54,765 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,769 creating build/bdist.linux-armv7l/wheel/mitos/draw 2024-03-21T12:10:54,770 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2024-03-21T12:10:54,774 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2024-03-21T12:10:54,775 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2024-03-21T12:10:54,778 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2024-03-21T12:10:54,781 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2024-03-21T12:10:54,782 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2024-03-21T12:10:54,787 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,788 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,792 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,796 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,799 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,802 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,805 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,809 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2024-03-21T12:10:54,812 creating build/bdist.linux-armv7l/wheel/mitos/protfeat 2024-03-21T12:10:54,813 copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat 2024-03-21T12:10:54,816 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,818 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2024-03-21T12:10:54,819 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2024-03-21T12:10:54,822 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,828 copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,830 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,832 copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,834 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,836 creating build/bdist.linux-armv7l/wheel/mitos/rna 2024-03-21T12:10:54,837 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-03-21T12:10:54,840 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-03-21T12:10:54,842 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2024-03-21T12:10:54,844 copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,846 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,847 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,850 copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,852 creating build/bdist.linux-armv7l/wheel/mitos/update 2024-03-21T12:10:54,853 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2024-03-21T12:10:54,856 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,858 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2024-03-21T12:10:54,859 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2024-03-21T12:10:54,862 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,863 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,865 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,867 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,869 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,872 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,874 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,876 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2024-03-21T12:10:54,878 copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,880 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,881 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,884 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2024-03-21T12:10:54,885 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2024-03-21T12:10:54,887 creating build/bdist.linux-armv7l/wheel/mitos/blast 2024-03-21T12:10:54,888 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2024-03-21T12:10:54,892 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,896 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2024-03-21T12:10:54,897 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2024-03-21T12:10:54,899 copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,902 creating build/bdist.linux-armv7l/wheel/mitos/trna 2024-03-21T12:10:54,903 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-03-21T12:10:54,905 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-03-21T12:10:54,908 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2024-03-21T12:10:54,911 creating build/bdist.linux-armv7l/wheel/mitos/feature 2024-03-21T12:10:54,912 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2024-03-21T12:10:54,916 copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,918 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2024-03-21T12:10:54,919 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2024-03-21T12:10:54,923 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,925 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,927 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,929 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,932 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,936 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2024-03-21T12:10:54,937 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2024-03-21T12:10:54,940 creating build/bdist.linux-armv7l/wheel/mitos/gb 2024-03-21T12:10:54,941 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2024-03-21T12:10:54,944 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2024-03-21T12:10:54,946 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2024-03-21T12:10:54,948 running install_egg_info 2024-03-21T12:10:54,980 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.1.8-py3.11.egg-info 2024-03-21T12:10:54,989 running install_scripts 2024-03-21T12:10:54,990 creating build/bdist.linux-armv7l/wheel/mitos-2.1.8.data 2024-03-21T12:10:54,991 creating build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:54,992 copying build/scripts-3.11/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:54,994 copying build/scripts-3.11/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:54,996 copying build/scripts-3.11/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:54,998 copying build/scripts-3.11/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,000 copying build/scripts-3.11/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,003 copying build/scripts-3.11/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,006 copying build/scripts-3.11/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,008 copying build/scripts-3.11/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,011 copying build/scripts-3.11/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,013 copying build/scripts-3.11/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,015 copying build/scripts-3.11/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,018 copying build/scripts-3.11/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,021 copying build/scripts-3.11/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,023 copying build/scripts-3.11/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts 2024-03-21T12:10:55,024 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/refseqsplit.py to 755 2024-03-21T12:10:55,025 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/plotprot.R to 755 2024-03-21T12:10:55,025 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/plotrna.R to 755 2024-03-21T12:10:55,026 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/taxtree.py to 755 2024-03-21T12:10:55,026 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/runmitos.py to 755 2024-03-21T12:10:55,027 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/plotstst.R to 755 2024-03-21T12:10:55,027 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/analyse.py to 755 2024-03-21T12:10:55,028 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/gcpp.py to 755 2024-03-21T12:10:55,029 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/getinfo.py to 755 2024-03-21T12:10:55,029 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/getfeatures.py to 755 2024-03-21T12:10:55,030 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/subseq.py to 755 2024-03-21T12:10:55,030 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/geneorder.py to 755 2024-03-21T12:10:55,031 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/update-blastdb.py to 755 2024-03-21T12:10:55,031 changing mode of build/bdist.linux-armv7l/wheel/mitos-2.1.8.data/scripts/drawmitos.py to 755 2024-03-21T12:10:55,042 creating build/bdist.linux-armv7l/wheel/mitos-2.1.8.dist-info/WHEEL 2024-03-21T12:10:55,045 creating '/tmp/pip-wheel-4p1u0r8s/mitos-2.1.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-21T12:10:55,048 adding 'mitos/CONFIG.py' 2024-03-21T12:10:55,049 adding 'mitos/__init__.py' 2024-03-21T12:10:55,051 adding 'mitos/booreparser.py' 2024-03-21T12:10:55,052 adding 'mitos/cmsearch_parse_separate.py' 2024-03-21T12:10:55,053 adding 'mitos/codoncount.py' 2024-03-21T12:10:55,057 adding 'mitos/convert_tree.py' 2024-03-21T12:10:55,059 adding 'mitos/create_prot_fasta.py' 2024-03-21T12:10:55,061 adding 'mitos/get-wancy.py' 2024-03-21T12:10:55,063 adding 'mitos/inihit.py' 2024-03-21T12:10:55,064 adding 'mitos/merge_results.py' 2024-03-21T12:10:55,069 adding 'mitos/mitoch_revisions.py' 2024-03-21T12:10:55,071 adding 'mitos/mitoloc.py' 2024-03-21T12:10:55,073 adding 'mitos/mitos-extension.py' 2024-03-21T12:10:55,076 adding 'mitos/mitos-extension2.py' 2024-03-21T12:10:55,077 adding 'mitos/mumcmp.py' 2024-03-21T12:10:55,078 adding 'mitos/names.py' 2024-03-21T12:10:55,080 adding 'mitos/ogre-geneorder.py' 2024-03-21T12:10:55,081 adding 'mitos/plotprot.R' 2024-03-21T12:10:55,083 adding 'mitos/plotrna.R' 2024-03-21T12:10:55,084 adding 'mitos/plotstst.R' 2024-03-21T12:10:55,086 adding 'mitos/prepareFiles.py' 2024-03-21T12:10:55,087 adding 'mitos/removegene.py' 2024-03-21T12:10:55,090 adding 'mitos/skew.py' 2024-03-21T12:10:55,105 adding 'mitos/trna-cm.py' 2024-03-21T12:10:55,109 adding 'mitos/trnadist.py' 2024-03-21T12:10:55,111 adding 'mitos/trnascan_parse_separate.py' 2024-03-21T12:10:55,113 adding 'mitos/update-mitolog.py' 2024-03-21T12:10:55,115 adding 'mitos/bedfile/__init__.py' 2024-03-21T12:10:55,126 adding 'mitos/blast/__init__.py' 2024-03-21T12:10:55,128 adding 'mitos/draw/__init__.py' 2024-03-21T12:10:55,130 adding 'mitos/extprog/__init__.py' 2024-03-21T12:10:55,136 adding 'mitos/feature/__init__.py' 2024-03-21T12:10:55,142 adding 'mitos/gb/__init__.py' 2024-03-21T12:10:55,144 adding 'mitos/gb/unify.py' 2024-03-21T12:10:55,146 adding 'mitos/gfffile/__init__.py' 2024-03-21T12:10:55,150 adding 'mitos/mergefeature/__init__.py' 2024-03-21T12:10:55,153 adding 'mitos/mitfi/__init__.py' 2024-03-21T12:10:55,155 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2024-03-21T12:10:55,157 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2024-03-21T12:10:55,161 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2024-03-21T12:10:55,165 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.old' 2024-03-21T12:10:55,169 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org' 2024-03-21T12:10:55,173 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ' 2024-03-21T12:10:55,177 adding 'mitos/mitfi/parser/mitfi_import.jar' 2024-03-21T12:10:55,179 adding 'mitos/mito/__init__.py' 2024-03-21T12:10:55,181 adding 'mitos/mitofile/__init__.py' 2024-03-21T12:10:55,185 adding 'mitos/protfeat/__init__.py' 2024-03-21T12:10:55,187 adding 'mitos/rna/__init__.py' 2024-03-21T12:10:55,188 adding 'mitos/rna/forester.py' 2024-03-21T12:10:55,190 adding 'mitos/rna/vienna.py' 2024-03-21T12:10:55,192 adding 'mitos/sequence/__init__.py' 2024-03-21T12:10:55,194 adding 'mitos/sequence/degenerate.py' 2024-03-21T12:10:55,196 adding 'mitos/tax/__init__.py' 2024-03-21T12:10:55,197 adding 'mitos/tbl/__init__.py' 2024-03-21T12:10:55,199 adding 'mitos/trna/__init__.py' 2024-03-21T12:10:55,201 adding 'mitos/trna/arwenscan.py' 2024-03-21T12:10:55,203 adding 'mitos/trna/trnascan.py' 2024-03-21T12:10:55,207 adding 'mitos/update/__init__.py' 2024-03-21T12:10:55,208 adding 'mitos/util/__init__.py' 2024-03-21T12:10:55,211 adding 'mitos/webserver/__init__.py' 2024-03-21T12:10:55,215 adding 'mitos/webserver/help.txt' 2024-03-21T12:10:55,216 adding 'mitos/webserver/history.txt' 2024-03-21T12:10:55,218 adding 'mitos/webserver/index.txt' 2024-03-21T12:10:55,219 adding 'mitos/webserver/news.txt' 2024-03-21T12:10:55,220 adding 'mitos/webserver/upload.txt' 2024-03-21T12:10:55,222 adding 'mitos/webserver/wait.txt' 2024-03-21T12:10:55,225 adding 'mitos-2.1.8.data/scripts/analyse.py' 2024-03-21T12:10:55,226 adding 'mitos-2.1.8.data/scripts/drawmitos.py' 2024-03-21T12:10:55,228 adding 'mitos-2.1.8.data/scripts/gcpp.py' 2024-03-21T12:10:55,230 adding 'mitos-2.1.8.data/scripts/geneorder.py' 2024-03-21T12:10:55,231 adding 'mitos-2.1.8.data/scripts/getfeatures.py' 2024-03-21T12:10:55,233 adding 'mitos-2.1.8.data/scripts/getinfo.py' 2024-03-21T12:10:55,234 adding 'mitos-2.1.8.data/scripts/plotprot.R' 2024-03-21T12:10:55,236 adding 'mitos-2.1.8.data/scripts/plotrna.R' 2024-03-21T12:10:55,237 adding 'mitos-2.1.8.data/scripts/plotstst.R' 2024-03-21T12:10:55,238 adding 'mitos-2.1.8.data/scripts/refseqsplit.py' 2024-03-21T12:10:55,244 adding 'mitos-2.1.8.data/scripts/runmitos.py' 2024-03-21T12:10:55,246 adding 'mitos-2.1.8.data/scripts/subseq.py' 2024-03-21T12:10:55,247 adding 'mitos-2.1.8.data/scripts/taxtree.py' 2024-03-21T12:10:55,248 adding 'mitos-2.1.8.data/scripts/update-blastdb.py' 2024-03-21T12:10:55,251 adding 'mitos-2.1.8.dist-info/LICENSE' 2024-03-21T12:10:55,252 adding 'mitos-2.1.8.dist-info/METADATA' 2024-03-21T12:10:55,253 adding 'mitos-2.1.8.dist-info/WHEEL' 2024-03-21T12:10:55,254 adding 'mitos-2.1.8.dist-info/top_level.txt' 2024-03-21T12:10:55,256 adding 'mitos-2.1.8.dist-info/RECORD' 2024-03-21T12:10:55,306 removing build/bdist.linux-armv7l/wheel 2024-03-21T12:10:55,446 Building wheel for mitos (setup.py): finished with status 'done' 2024-03-21T12:10:55,452 Created wheel for mitos: filename=mitos-2.1.8-py3-none-any.whl size=332256 sha256=c68c4708043cf10b33dd71b30ee207ed4d3923e12ca21421cdf8c98b1cb64451 2024-03-21T12:10:55,453 Stored in directory: /tmp/pip-ephem-wheel-cache-ebfh8xh2/wheels/b9/a9/da/71df201cb0bc2a3cd3f4d5a445eb33845ad4e463b579fd8c03 2024-03-21T12:10:55,467 Successfully built mitos 2024-03-21T12:10:55,482 Removed build tracker: '/tmp/pip-build-tracker-d_bngdd7'