2024-03-21T16:55:18,405 Created temporary directory: /tmp/pip-build-tracker-07auqkld 2024-03-21T16:55:18,407 Initialized build tracking at /tmp/pip-build-tracker-07auqkld 2024-03-21T16:55:18,407 Created build tracker: /tmp/pip-build-tracker-07auqkld 2024-03-21T16:55:18,408 Entered build tracker: /tmp/pip-build-tracker-07auqkld 2024-03-21T16:55:18,408 Created temporary directory: /tmp/pip-wheel-5v_cbs8d 2024-03-21T16:55:18,412 Created temporary directory: /tmp/pip-ephem-wheel-cache-t7gd8pae 2024-03-21T16:55:18,434 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T16:55:18,437 2 location(s) to search for versions of rna-fm: 2024-03-21T16:55:18,437 * https://pypi.org/simple/rna-fm/ 2024-03-21T16:55:18,437 * https://www.piwheels.org/simple/rna-fm/ 2024-03-21T16:55:18,438 Fetching project page and analyzing links: https://pypi.org/simple/rna-fm/ 2024-03-21T16:55:18,439 Getting page https://pypi.org/simple/rna-fm/ 2024-03-21T16:55:18,440 Found index url https://pypi.org/simple/ 2024-03-21T16:55:18,651 Fetched page https://pypi.org/simple/rna-fm/ as application/vnd.pypi.simple.v1+json 2024-03-21T16:55:18,653 Found link https://files.pythonhosted.org/packages/9e/51/35430b11dccb5116032abee50a8f12014a6334a0814d437c8685cc0b814f/rna-fm-0.1.0.tar.gz (from https://pypi.org/simple/rna-fm/), version: 0.1.0 2024-03-21T16:55:18,654 Found link https://files.pythonhosted.org/packages/32/33/609fe4bb731c1054d24d92a8e5573b898f5d2b8f8338c69cdf3a885b202f/rna-fm-0.1.2.tar.gz (from https://pypi.org/simple/rna-fm/), version: 0.1.2 2024-03-21T16:55:18,655 Found link https://files.pythonhosted.org/packages/40/2c/e15eadcc21c8cbcf324fb44cddca0f2014a6d1e0b566e2c3f61bee10ad1d/rna-fm-0.2.0.tar.gz (from https://pypi.org/simple/rna-fm/), version: 0.2.0 2024-03-21T16:55:18,655 Skipping link: No binaries permitted for rna-fm: https://files.pythonhosted.org/packages/94/da/d6f9eab6c1211aff033ca5879752219f6dcf83b68c36eee8bb5e04f0c827/rna_fm-0.2.0-py3-none-any.whl (from https://pypi.org/simple/rna-fm/) 2024-03-21T16:55:18,656 Found link https://files.pythonhosted.org/packages/67/36/04fcd112b2ce9b2da3a66d1fb00933491903d24405315d2f5e86599e0df3/rna-fm-0.2.1.tar.gz (from https://pypi.org/simple/rna-fm/), version: 0.2.1 2024-03-21T16:55:18,656 Skipping link: No binaries permitted for rna-fm: https://files.pythonhosted.org/packages/32/e2/ef14f788df7fafb092c6f7abdc552b43ec1069d14387e4d0d0638cad09b2/rna_fm-0.2.1-py3-none-any.whl (from https://pypi.org/simple/rna-fm/) 2024-03-21T16:55:18,657 Fetching project page and analyzing links: https://www.piwheels.org/simple/rna-fm/ 2024-03-21T16:55:18,658 Getting page https://www.piwheels.org/simple/rna-fm/ 2024-03-21T16:55:18,659 Found index url https://www.piwheels.org/simple/ 2024-03-21T16:55:19,002 Fetched page https://www.piwheels.org/simple/rna-fm/ as text/html 2024-03-21T16:55:19,004 Skipping link: No binaries permitted for rna-fm: https://www.piwheels.org/simple/rna-fm/rna_fm-0.2.0-py3-none-any.whl#sha256=b5bcaeca67c48ea69865c514c3955626650732f4e1e44ec894a636c4948e24f8 (from https://www.piwheels.org/simple/rna-fm/) 2024-03-21T16:55:19,004 Skipping link: No binaries permitted for rna-fm: https://www.piwheels.org/simple/rna-fm/rna_fm-0.1.2-py3-none-any.whl#sha256=d8e6a21e21d0847d8dbcbcdd2981c7c1604ad5a98595582fd91499a9f15b6065 (from https://www.piwheels.org/simple/rna-fm/) 2024-03-21T16:55:19,005 Skipping link: No binaries permitted for rna-fm: https://www.piwheels.org/simple/rna-fm/rna_fm-0.1.0-py3-none-any.whl#sha256=cd824beb1d2767fbc78d3b06b7bda248f6ba1170804dc04c967b9b0b3b4d5012 (from https://www.piwheels.org/simple/rna-fm/) 2024-03-21T16:55:19,005 Skipping link: not a file: https://www.piwheels.org/simple/rna-fm/ 2024-03-21T16:55:19,006 Skipping link: not a file: https://pypi.org/simple/rna-fm/ 2024-03-21T16:55:19,025 Given no hashes to check 1 links for project 'rna-fm': discarding no candidates 2024-03-21T16:55:19,043 Collecting rna-fm==0.2.1 2024-03-21T16:55:19,046 Created temporary directory: /tmp/pip-unpack-bn6io9fp 2024-03-21T16:55:19,257 Downloading rna-fm-0.2.1.tar.gz (37 kB) 2024-03-21T16:55:19,364 Added rna-fm==0.2.1 from https://files.pythonhosted.org/packages/67/36/04fcd112b2ce9b2da3a66d1fb00933491903d24405315d2f5e86599e0df3/rna-fm-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-07auqkld' 2024-03-21T16:55:19,366 Running setup.py (path:/tmp/pip-wheel-5v_cbs8d/rna-fm_8d73c7b49c754ee993c1c7b99fb6ec10/setup.py) egg_info for package rna-fm 2024-03-21T16:55:19,367 Created temporary directory: /tmp/pip-pip-egg-info-07ir5n_s 2024-03-21T16:55:19,367 Preparing metadata (setup.py): started 2024-03-21T16:55:19,369 Running command python setup.py egg_info 2024-03-21T16:55:20,462 running egg_info 2024-03-21T16:55:20,463 creating /tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info 2024-03-21T16:55:20,490 writing /tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/PKG-INFO 2024-03-21T16:55:20,496 writing dependency_links to /tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/dependency_links.txt 2024-03-21T16:55:20,498 writing requirements to /tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/requires.txt 2024-03-21T16:55:20,500 writing top-level names to /tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/top_level.txt 2024-03-21T16:55:20,502 writing manifest file '/tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/SOURCES.txt' 2024-03-21T16:55:20,588 reading manifest file '/tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/SOURCES.txt' 2024-03-21T16:55:20,590 adding license file 'LICENSE' 2024-03-21T16:55:20,592 writing manifest file '/tmp/pip-pip-egg-info-07ir5n_s/rna_fm.egg-info/SOURCES.txt' 2024-03-21T16:55:20,701 Preparing metadata (setup.py): finished with status 'done' 2024-03-21T16:55:20,706 Source in /tmp/pip-wheel-5v_cbs8d/rna-fm_8d73c7b49c754ee993c1c7b99fb6ec10 has version 0.2.1, which satisfies requirement rna-fm==0.2.1 from https://files.pythonhosted.org/packages/67/36/04fcd112b2ce9b2da3a66d1fb00933491903d24405315d2f5e86599e0df3/rna-fm-0.2.1.tar.gz 2024-03-21T16:55:20,707 Removed rna-fm==0.2.1 from https://files.pythonhosted.org/packages/67/36/04fcd112b2ce9b2da3a66d1fb00933491903d24405315d2f5e86599e0df3/rna-fm-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-07auqkld' 2024-03-21T16:55:20,712 Created temporary directory: /tmp/pip-unpack-bzwafktj 2024-03-21T16:55:20,714 Created temporary directory: /tmp/pip-unpack-fs7fndyc 2024-03-21T16:55:20,723 Building wheels for collected packages: rna-fm 2024-03-21T16:55:20,728 Created temporary directory: /tmp/pip-wheel-wlappo0c 2024-03-21T16:55:20,728 Building wheel for rna-fm (setup.py): started 2024-03-21T16:55:20,730 Destination directory: /tmp/pip-wheel-wlappo0c 2024-03-21T16:55:20,730 Running command python setup.py bdist_wheel 2024-03-21T16:55:22,048 running bdist_wheel 2024-03-21T16:55:22,146 running build 2024-03-21T16:55:22,147 running build_py 2024-03-21T16:55:22,174 creating build 2024-03-21T16:55:22,175 creating build/lib 2024-03-21T16:55:22,176 creating build/lib/fm 2024-03-21T16:55:22,177 copying fm/constants.py -> build/lib/fm 2024-03-21T16:55:22,180 copying fm/version.py -> build/lib/fm 2024-03-21T16:55:22,182 copying fm/__init__.py -> build/lib/fm 2024-03-21T16:55:22,183 copying fm/model.py -> build/lib/fm 2024-03-21T16:55:22,186 copying fm/multihead_attention.py -> build/lib/fm 2024-03-21T16:55:22,189 copying fm/pretrained.py -> build/lib/fm 2024-03-21T16:55:22,191 copying fm/axial_attention.py -> build/lib/fm 2024-03-21T16:55:22,194 copying fm/data.py -> build/lib/fm 2024-03-21T16:55:22,196 copying fm/modules.py -> build/lib/fm 2024-03-21T16:55:22,199 creating build/lib/fm/model 2024-03-21T16:55:22,201 copying fm/model/__init__.py -> build/lib/fm/model 2024-03-21T16:55:22,203 copying fm/model/esm1.py -> build/lib/fm/model 2024-03-21T16:55:22,206 creating build/lib/fm/downstream 2024-03-21T16:55:22,207 copying fm/downstream/baseline.py -> build/lib/fm/downstream 2024-03-21T16:55:22,210 copying fm/downstream/downstream_module.py -> build/lib/fm/downstream 2024-03-21T16:55:22,213 copying fm/downstream/backbones.py -> build/lib/fm/downstream 2024-03-21T16:55:22,215 copying fm/downstream/__init__.py -> build/lib/fm/downstream 2024-03-21T16:55:22,217 copying fm/downstream/weights_init.py -> build/lib/fm/downstream 2024-03-21T16:55:22,219 copying fm/downstream/weights_load.py -> build/lib/fm/downstream 2024-03-21T16:55:22,221 creating build/lib/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,222 copying fm/downstream/pairwise_predictor/__init__.py -> build/lib/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,225 copying fm/downstream/pairwise_predictor/linear_dot_product.py -> build/lib/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,227 copying fm/downstream/pairwise_predictor/pairwise_concat.py -> build/lib/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,259 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-21T16:55:22,260 !! 2024-03-21T16:55:22,261 ******************************************************************************** 2024-03-21T16:55:22,261 Please avoid running ``setup.py`` directly. 2024-03-21T16:55:22,261 Instead, use pypa/build, pypa/installer or other 2024-03-21T16:55:22,262 standards-based tools. 2024-03-21T16:55:22,263 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-21T16:55:22,263 ******************************************************************************** 2024-03-21T16:55:22,264 !! 2024-03-21T16:55:22,265 self.initialize_options() 2024-03-21T16:55:22,284 installing to build/bdist.linux-armv7l/wheel 2024-03-21T16:55:22,284 running install 2024-03-21T16:55:22,307 running install_lib 2024-03-21T16:55:22,333 creating build/bdist.linux-armv7l 2024-03-21T16:55:22,333 creating build/bdist.linux-armv7l/wheel 2024-03-21T16:55:22,335 creating build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,336 copying build/lib/fm/constants.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,338 copying build/lib/fm/version.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,340 copying build/lib/fm/__init__.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,342 copying build/lib/fm/model.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,344 copying build/lib/fm/multihead_attention.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,347 copying build/lib/fm/pretrained.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,351 creating build/bdist.linux-armv7l/wheel/fm/model 2024-03-21T16:55:22,352 copying build/lib/fm/model/__init__.py -> build/bdist.linux-armv7l/wheel/fm/model 2024-03-21T16:55:22,354 copying build/lib/fm/model/esm1.py -> build/bdist.linux-armv7l/wheel/fm/model 2024-03-21T16:55:22,357 copying build/lib/fm/axial_attention.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,360 creating build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,361 copying build/lib/fm/downstream/baseline.py -> build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,364 copying build/lib/fm/downstream/downstream_module.py -> build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,366 copying build/lib/fm/downstream/backbones.py -> build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,368 copying build/lib/fm/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,371 copying build/lib/fm/downstream/weights_init.py -> build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,373 creating build/bdist.linux-armv7l/wheel/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,374 copying build/lib/fm/downstream/pairwise_predictor/__init__.py -> build/bdist.linux-armv7l/wheel/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,376 copying build/lib/fm/downstream/pairwise_predictor/linear_dot_product.py -> build/bdist.linux-armv7l/wheel/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,378 copying build/lib/fm/downstream/pairwise_predictor/pairwise_concat.py -> build/bdist.linux-armv7l/wheel/fm/downstream/pairwise_predictor 2024-03-21T16:55:22,381 copying build/lib/fm/downstream/weights_load.py -> build/bdist.linux-armv7l/wheel/fm/downstream 2024-03-21T16:55:22,384 copying build/lib/fm/data.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,386 copying build/lib/fm/modules.py -> build/bdist.linux-armv7l/wheel/fm 2024-03-21T16:55:22,388 running install_data 2024-03-21T16:55:22,415 creating build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.data 2024-03-21T16:55:22,416 creating build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.data/data 2024-03-21T16:55:22,417 creating build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.data/data/source_docs 2024-03-21T16:55:22,418 creating build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.data/data/source_docs/fm 2024-03-21T16:55:22,419 copying LICENSE -> build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.data/data/source_docs/fm 2024-03-21T16:55:22,422 copying README.md -> build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.data/data/source_docs/fm 2024-03-21T16:55:22,424 running install_egg_info 2024-03-21T16:55:22,484 running egg_info 2024-03-21T16:55:22,511 writing rna_fm.egg-info/PKG-INFO 2024-03-21T16:55:22,515 writing dependency_links to rna_fm.egg-info/dependency_links.txt 2024-03-21T16:55:22,516 writing requirements to rna_fm.egg-info/requires.txt 2024-03-21T16:55:22,518 writing top-level names to rna_fm.egg-info/top_level.txt 2024-03-21T16:55:22,558 reading manifest file 'rna_fm.egg-info/SOURCES.txt' 2024-03-21T16:55:22,561 adding license file 'LICENSE' 2024-03-21T16:55:22,564 writing manifest file 'rna_fm.egg-info/SOURCES.txt' 2024-03-21T16:55:22,566 Copying rna_fm.egg-info to build/bdist.linux-armv7l/wheel/rna_fm-0.2.1-py3.11.egg-info 2024-03-21T16:55:22,581 running install_scripts 2024-03-21T16:55:22,603 creating build/bdist.linux-armv7l/wheel/rna_fm-0.2.1.dist-info/WHEEL 2024-03-21T16:55:22,605 creating '/tmp/pip-wheel-wlappo0c/rna_fm-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-21T16:55:22,608 adding 'fm/__init__.py' 2024-03-21T16:55:22,610 adding 'fm/axial_attention.py' 2024-03-21T16:55:22,612 adding 'fm/constants.py' 2024-03-21T16:55:22,615 adding 'fm/data.py' 2024-03-21T16:55:22,619 adding 'fm/model.py' 2024-03-21T16:55:22,622 adding 'fm/modules.py' 2024-03-21T16:55:22,625 adding 'fm/multihead_attention.py' 2024-03-21T16:55:22,627 adding 'fm/pretrained.py' 2024-03-21T16:55:22,628 adding 'fm/version.py' 2024-03-21T16:55:22,629 adding 'fm/downstream/__init__.py' 2024-03-21T16:55:22,631 adding 'fm/downstream/backbones.py' 2024-03-21T16:55:22,633 adding 'fm/downstream/baseline.py' 2024-03-21T16:55:22,634 adding 'fm/downstream/downstream_module.py' 2024-03-21T16:55:22,636 adding 'fm/downstream/weights_init.py' 2024-03-21T16:55:22,637 adding 'fm/downstream/weights_load.py' 2024-03-21T16:55:22,639 adding 'fm/downstream/pairwise_predictor/__init__.py' 2024-03-21T16:55:22,640 adding 'fm/downstream/pairwise_predictor/linear_dot_product.py' 2024-03-21T16:55:22,642 adding 'fm/downstream/pairwise_predictor/pairwise_concat.py' 2024-03-21T16:55:22,644 adding 'fm/model/__init__.py' 2024-03-21T16:55:22,646 adding 'fm/model/esm1.py' 2024-03-21T16:55:22,649 adding 'rna_fm-0.2.1.data/data/source_docs/fm/LICENSE' 2024-03-21T16:55:22,651 adding 'rna_fm-0.2.1.data/data/source_docs/fm/README.md' 2024-03-21T16:55:22,653 adding 'rna_fm-0.2.1.dist-info/LICENSE' 2024-03-21T16:55:22,655 adding 'rna_fm-0.2.1.dist-info/METADATA' 2024-03-21T16:55:22,656 adding 'rna_fm-0.2.1.dist-info/WHEEL' 2024-03-21T16:55:22,657 adding 'rna_fm-0.2.1.dist-info/top_level.txt' 2024-03-21T16:55:22,658 adding 'rna_fm-0.2.1.dist-info/zip-safe' 2024-03-21T16:55:22,659 adding 'rna_fm-0.2.1.dist-info/RECORD' 2024-03-21T16:55:22,661 removing build/bdist.linux-armv7l/wheel 2024-03-21T16:55:22,782 Building wheel for rna-fm (setup.py): finished with status 'done' 2024-03-21T16:55:22,785 Created wheel for rna-fm: filename=rna_fm-0.2.1-py3-none-any.whl size=46593 sha256=a9c4d2e45a94663e84f67663d3d17d444681cdbe40ac0330671024df5ff112da 2024-03-21T16:55:22,786 Stored in directory: /tmp/pip-ephem-wheel-cache-t7gd8pae/wheels/56/6b/aa/da7f3ef1d6d959364e45988bf23522deaef41384095c234f7a 2024-03-21T16:55:22,797 Successfully built rna-fm 2024-03-21T16:55:22,802 Removed build tracker: '/tmp/pip-build-tracker-07auqkld'