2024-03-21T18:41:40,856 Created temporary directory: /tmp/pip-build-tracker-uyvh86mj 2024-03-21T18:41:40,857 Initialized build tracking at /tmp/pip-build-tracker-uyvh86mj 2024-03-21T18:41:40,858 Created build tracker: /tmp/pip-build-tracker-uyvh86mj 2024-03-21T18:41:40,858 Entered build tracker: /tmp/pip-build-tracker-uyvh86mj 2024-03-21T18:41:40,859 Created temporary directory: /tmp/pip-wheel-tqof96nq 2024-03-21T18:41:40,862 Created temporary directory: /tmp/pip-ephem-wheel-cache-r0nv1f3i 2024-03-21T18:41:40,884 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T18:41:40,887 2 location(s) to search for versions of figeno: 2024-03-21T18:41:40,887 * https://pypi.org/simple/figeno/ 2024-03-21T18:41:40,887 * https://www.piwheels.org/simple/figeno/ 2024-03-21T18:41:40,888 Fetching project page and analyzing links: https://pypi.org/simple/figeno/ 2024-03-21T18:41:40,889 Getting page https://pypi.org/simple/figeno/ 2024-03-21T18:41:40,890 Found index url https://pypi.org/simple/ 2024-03-21T18:41:41,112 Fetched page https://pypi.org/simple/figeno/ as application/vnd.pypi.simple.v1+json 2024-03-21T18:41:41,115 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/ee/c3/54db836641d4a607bc395ab2a5672923216c04f27d64c4836262babe0677/figeno-0.0.2-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,116 Found link https://files.pythonhosted.org/packages/53/e4/a9bd6b3ec25130d0168be05940cf1053a2c45e6de2ddfaea31ed52b7541c/figeno-0.0.2.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.0.2 2024-03-21T18:41:41,116 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/7d/72/2ad97a122d46f6749cf47e22417a143a62d6486f68f7a854ff24c3cf107f/figeno-0.3.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,117 Found link https://files.pythonhosted.org/packages/ad/b7/9248f8efba4e9c58e5fe317b995dc5c7c89f783bfaab7a87e60a3304f324/figeno-0.3.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.0 2024-03-21T18:41:41,118 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/15/c6/28eb3b1ef01132bf31f692d8d9cff5e3b0097317925ec03976a574b3c45e/figeno-0.3.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,119 Found link https://files.pythonhosted.org/packages/cb/22/db1fba1f5fa16f9ca9ee81f6ab607325f5ebfdce63312a220828aff3963b/figeno-0.3.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.1 2024-03-21T18:41:41,120 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/29/be/106c231fcd52ced3c0e2b3ea11f035c075e13c99a080a5924982aba28830/figeno-1.0.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,121 Found link https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.0 2024-03-21T18:41:41,121 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/3d/05/bfae29040060d48f1e2c3752dc5f862752d97900375229aaf9f53e2e5543/figeno-1.0.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,122 Found link https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.1 2024-03-21T18:41:41,123 Fetching project page and analyzing links: https://www.piwheels.org/simple/figeno/ 2024-03-21T18:41:41,124 Getting page https://www.piwheels.org/simple/figeno/ 2024-03-21T18:41:41,125 Found index url https://www.piwheels.org/simple/ 2024-03-21T18:41:41,621 Fetched page https://www.piwheels.org/simple/figeno/ as text/html 2024-03-21T18:41:41,624 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.1-py3-none-any.whl#sha256=0a2fa01b4e74455ad540ac82d0f36fc48571690fb8c1d1cdfeba1112693d143a (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,624 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.0-py3-none-any.whl#sha256=410880abf37efd537f26d07d0c783dbef02bd16e9cf91779167f8de1c5dc7f0f (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,625 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.0.2-py3-none-any.whl#sha256=f6d27564c7ff816ff67439cd0ed3db2adbb6d161ac221f9acb3322b0062632d7 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:41:41,626 Skipping link: not a file: https://www.piwheels.org/simple/figeno/ 2024-03-21T18:41:41,626 Skipping link: not a file: https://pypi.org/simple/figeno/ 2024-03-21T18:41:41,645 Given no hashes to check 1 links for project 'figeno': discarding no candidates 2024-03-21T18:41:41,662 Collecting figeno==1.0.0 2024-03-21T18:41:41,665 Created temporary directory: /tmp/pip-unpack-z7xalrnx 2024-03-21T18:41:42,167 Downloading figeno-1.0.0.tar.gz (14.4 MB) 2024-03-21T18:41:45,518 Added figeno==1.0.0 from https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-uyvh86mj' 2024-03-21T18:41:45,523 Created temporary directory: /tmp/pip-build-env-_vxdfzlb 2024-03-21T18:41:45,527 Installing build dependencies: started 2024-03-21T18:41:45,528 Running command pip subprocess to install build dependencies 2024-03-21T18:41:46,669 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-21T18:41:47,161 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T18:41:49,108 Collecting setuptools>=61.0 2024-03-21T18:41:49,123 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-21T18:41:51,726 Installing collected packages: setuptools 2024-03-21T18:41:53,956 Successfully installed setuptools-69.2.0 2024-03-21T18:41:54,440 Installing build dependencies: finished with status 'done' 2024-03-21T18:41:54,443 Getting requirements to build wheel: started 2024-03-21T18:41:54,444 Running command Getting requirements to build wheel 2024-03-21T18:41:55,175 running egg_info 2024-03-21T18:41:55,178 writing figeno.egg-info/PKG-INFO 2024-03-21T18:41:55,181 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-03-21T18:41:55,183 writing entry points to figeno.egg-info/entry_points.txt 2024-03-21T18:41:55,185 writing requirements to figeno.egg-info/requires.txt 2024-03-21T18:41:55,186 writing top-level names to figeno.egg-info/top_level.txt 2024-03-21T18:41:55,204 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:41:55,209 reading manifest template 'MANIFEST.in' 2024-03-21T18:41:55,219 adding license file 'LICENSE' 2024-03-21T18:41:55,223 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:41:55,334 Getting requirements to build wheel: finished with status 'done' 2024-03-21T18:41:55,342 Installing backend dependencies: started 2024-03-21T18:41:55,343 Running command pip subprocess to install backend dependencies 2024-03-21T18:41:56,472 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-21T18:41:56,963 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T18:41:57,653 Collecting wheel 2024-03-21T18:41:57,798 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-21T18:42:00,060 Installing collected packages: wheel 2024-03-21T18:42:00,284 Creating /tmp/pip-build-env-_vxdfzlb/normal/local/bin 2024-03-21T18:42:00,286 changing mode of /tmp/pip-build-env-_vxdfzlb/normal/local/bin/wheel to 755 2024-03-21T18:42:00,298 Successfully installed wheel-0.43.0 2024-03-21T18:42:00,746 Installing backend dependencies: finished with status 'done' 2024-03-21T18:42:00,748 Created temporary directory: /tmp/pip-modern-metadata-vdpguue5 2024-03-21T18:42:00,750 Preparing metadata (pyproject.toml): started 2024-03-21T18:42:00,751 Running command Preparing metadata (pyproject.toml) 2024-03-21T18:42:01,554 running dist_info 2024-03-21T18:42:01,559 creating /tmp/pip-modern-metadata-vdpguue5/figeno.egg-info 2024-03-21T18:42:01,563 writing /tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/PKG-INFO 2024-03-21T18:42:01,566 writing dependency_links to /tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/dependency_links.txt 2024-03-21T18:42:01,568 writing entry points to /tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/entry_points.txt 2024-03-21T18:42:01,570 writing requirements to /tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/requires.txt 2024-03-21T18:42:01,571 writing top-level names to /tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/top_level.txt 2024-03-21T18:42:01,572 writing manifest file '/tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/SOURCES.txt' 2024-03-21T18:42:01,592 reading manifest file '/tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/SOURCES.txt' 2024-03-21T18:42:01,594 reading manifest template 'MANIFEST.in' 2024-03-21T18:42:01,605 adding license file 'LICENSE' 2024-03-21T18:42:01,608 writing manifest file '/tmp/pip-modern-metadata-vdpguue5/figeno.egg-info/SOURCES.txt' 2024-03-21T18:42:01,609 creating '/tmp/pip-modern-metadata-vdpguue5/figeno-1.0.0.dist-info' 2024-03-21T18:42:01,759 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-21T18:42:01,764 Source in /tmp/pip-wheel-tqof96nq/figeno_2a7405c100634507a8914cdfbee42a48 has version 1.0.0, which satisfies requirement figeno==1.0.0 from https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz 2024-03-21T18:42:01,765 Removed figeno==1.0.0 from https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-uyvh86mj' 2024-03-21T18:42:01,770 Created temporary directory: /tmp/pip-unpack-424ulb3j 2024-03-21T18:42:01,771 Created temporary directory: /tmp/pip-unpack-h3klzy8a 2024-03-21T18:42:01,786 Building wheels for collected packages: figeno 2024-03-21T18:42:01,790 Created temporary directory: /tmp/pip-wheel-yw7o6wjn 2024-03-21T18:42:01,790 Destination directory: /tmp/pip-wheel-yw7o6wjn 2024-03-21T18:42:01,792 Building wheel for figeno (pyproject.toml): started 2024-03-21T18:42:01,794 Running command Building wheel for figeno (pyproject.toml) 2024-03-21T18:42:02,528 running bdist_wheel 2024-03-21T18:42:02,543 running build 2024-03-21T18:42:02,544 running build_py 2024-03-21T18:42:02,548 creating build 2024-03-21T18:42:02,549 creating build/lib 2024-03-21T18:42:02,550 creating build/lib/figeno 2024-03-21T18:42:02,551 copying figeno/ase.py -> build/lib/figeno 2024-03-21T18:42:02,553 copying figeno/genes.py -> build/lib/figeno 2024-03-21T18:42:02,556 copying figeno/track_hic.py -> build/lib/figeno 2024-03-21T18:42:02,559 copying figeno/utils.py -> build/lib/figeno 2024-03-21T18:42:02,561 copying figeno/track_genes.py -> build/lib/figeno 2024-03-21T18:42:02,563 copying figeno/track_ase.py -> build/lib/figeno 2024-03-21T18:42:02,565 copying figeno/vcf.py -> build/lib/figeno 2024-03-21T18:42:02,567 copying figeno/track_bed.py -> build/lib/figeno 2024-03-21T18:42:02,569 copying figeno/track_coverage.py -> build/lib/figeno 2024-03-21T18:42:02,571 copying figeno/track_copynumber.py -> build/lib/figeno 2024-03-21T18:42:02,574 copying figeno/__init__.py -> build/lib/figeno 2024-03-21T18:42:02,575 copying figeno/track_chr.py -> build/lib/figeno 2024-03-21T18:42:02,578 copying figeno/figeno.py -> build/lib/figeno 2024-03-21T18:42:02,580 copying figeno/track_sv.py -> build/lib/figeno 2024-03-21T18:42:02,583 copying figeno/track_basemodfreq.py -> build/lib/figeno 2024-03-21T18:42:02,585 copying figeno/track_alignments.py -> build/lib/figeno 2024-03-21T18:42:02,588 copying figeno/track_bigwig.py -> build/lib/figeno 2024-03-21T18:42:02,590 copying figeno/bam.py -> build/lib/figeno 2024-03-21T18:42:02,593 creating build/lib/figeno/data 2024-03-21T18:42:02,593 copying figeno/data/__init__.py -> build/lib/figeno/data 2024-03-21T18:42:02,595 creating build/lib/figeno/cli 2024-03-21T18:42:02,596 copying figeno/cli/make.py -> build/lib/figeno/cli 2024-03-21T18:42:02,598 copying figeno/cli/cli.py -> build/lib/figeno/cli 2024-03-21T18:42:02,599 copying figeno/cli/gui.py -> build/lib/figeno/cli 2024-03-21T18:42:02,601 copying figeno/cli/__init__.py -> build/lib/figeno/cli 2024-03-21T18:42:02,602 copying figeno/cli/init.py -> build/lib/figeno/cli 2024-03-21T18:42:02,605 creating build/lib/figeno/gui 2024-03-21T18:42:02,605 copying figeno/gui/gui_server.py -> build/lib/figeno/gui 2024-03-21T18:42:02,607 copying figeno/gui/gui_browser.py -> build/lib/figeno/gui 2024-03-21T18:42:02,609 copying figeno/gui/gui_webview.py -> build/lib/figeno/gui 2024-03-21T18:42:02,611 copying figeno/gui/__init__.py -> build/lib/figeno/gui 2024-03-21T18:42:02,612 running egg_info 2024-03-21T18:42:02,615 writing figeno.egg-info/PKG-INFO 2024-03-21T18:42:02,618 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-03-21T18:42:02,620 writing entry points to figeno.egg-info/entry_points.txt 2024-03-21T18:42:02,622 writing requirements to figeno.egg-info/requires.txt 2024-03-21T18:42:02,623 writing top-level names to figeno.egg-info/top_level.txt 2024-03-21T18:42:02,632 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:42:02,635 reading manifest template 'MANIFEST.in' 2024-03-21T18:42:02,645 adding license file 'LICENSE' 2024-03-21T18:42:02,648 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:42:02,651 /tmp/pip-build-env-_vxdfzlb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build' is absent from the `packages` configuration. 2024-03-21T18:42:02,651 !! 2024-03-21T18:42:02,652 ******************************************************************************** 2024-03-21T18:42:02,653 ############################ 2024-03-21T18:42:02,654 # Package would be ignored # 2024-03-21T18:42:02,654 ############################ 2024-03-21T18:42:02,655 Python recognizes 'figeno.gui.build' as an importable package[^1], 2024-03-21T18:42:02,655 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:42:02,656 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:42:02,656 package, please make sure that 'figeno.gui.build' is explicitly added 2024-03-21T18:42:02,657 to the `packages` configuration field. 2024-03-21T18:42:02,658 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:42:02,658 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:42:02,659 instead of `find_packages(...)`/`find:`). 2024-03-21T18:42:02,660 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:42:02,661 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:42:02,662 If you don't want 'figeno.gui.build' to be distributed and are 2024-03-21T18:42:02,663 already explicitly excluding 'figeno.gui.build' via 2024-03-21T18:42:02,663 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:42:02,664 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:42:02,664 combination with a more fine grained `package-data` configuration. 2024-03-21T18:42:02,665 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:42:02,667 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:42:02,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:42:02,669 even if it does not contain any `.py` files. 2024-03-21T18:42:02,669 On the other hand, currently there is no concept of package data 2024-03-21T18:42:02,669 directory, all directories are treated like packages. 2024-03-21T18:42:02,670 ******************************************************************************** 2024-03-21T18:42:02,671 !! 2024-03-21T18:42:02,671 check.warn(importable) 2024-03-21T18:42:02,672 /tmp/pip-build-env-_vxdfzlb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.css' is absent from the `packages` configuration. 2024-03-21T18:42:02,672 !! 2024-03-21T18:42:02,673 ******************************************************************************** 2024-03-21T18:42:02,673 ############################ 2024-03-21T18:42:02,674 # Package would be ignored # 2024-03-21T18:42:02,674 ############################ 2024-03-21T18:42:02,675 Python recognizes 'figeno.gui.build.static.css' as an importable package[^1], 2024-03-21T18:42:02,675 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:42:02,676 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:42:02,677 package, please make sure that 'figeno.gui.build.static.css' is explicitly added 2024-03-21T18:42:02,677 to the `packages` configuration field. 2024-03-21T18:42:02,678 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:42:02,679 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:42:02,679 instead of `find_packages(...)`/`find:`). 2024-03-21T18:42:02,680 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:42:02,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:42:02,682 If you don't want 'figeno.gui.build.static.css' to be distributed and are 2024-03-21T18:42:02,683 already explicitly excluding 'figeno.gui.build.static.css' via 2024-03-21T18:42:02,684 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:42:02,685 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:42:02,685 combination with a more fine grained `package-data` configuration. 2024-03-21T18:42:02,687 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:42:02,688 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:42:02,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:42:02,690 even if it does not contain any `.py` files. 2024-03-21T18:42:02,691 On the other hand, currently there is no concept of package data 2024-03-21T18:42:02,691 directory, all directories are treated like packages. 2024-03-21T18:42:02,692 ******************************************************************************** 2024-03-21T18:42:02,693 !! 2024-03-21T18:42:02,694 check.warn(importable) 2024-03-21T18:42:02,694 /tmp/pip-build-env-_vxdfzlb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.js' is absent from the `packages` configuration. 2024-03-21T18:42:02,695 !! 2024-03-21T18:42:02,696 ******************************************************************************** 2024-03-21T18:42:02,697 ############################ 2024-03-21T18:42:02,698 # Package would be ignored # 2024-03-21T18:42:02,704 ############################ 2024-03-21T18:42:02,710 Python recognizes 'figeno.gui.build.static.js' as an importable package[^1], 2024-03-21T18:42:02,713 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:42:02,725 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:42:02,731 package, please make sure that 'figeno.gui.build.static.js' is explicitly added 2024-03-21T18:42:02,733 to the `packages` configuration field. 2024-03-21T18:42:02,736 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:42:02,736 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:42:02,737 instead of `find_packages(...)`/`find:`). 2024-03-21T18:42:02,738 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:42:02,739 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:42:02,740 If you don't want 'figeno.gui.build.static.js' to be distributed and are 2024-03-21T18:42:02,741 already explicitly excluding 'figeno.gui.build.static.js' via 2024-03-21T18:42:02,741 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:42:02,741 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:42:02,742 combination with a more fine grained `package-data` configuration. 2024-03-21T18:42:02,748 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:42:02,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:42:02,751 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:42:02,752 even if it does not contain any `.py` files. 2024-03-21T18:42:02,753 On the other hand, currently there is no concept of package data 2024-03-21T18:42:02,753 directory, all directories are treated like packages. 2024-03-21T18:42:02,754 ******************************************************************************** 2024-03-21T18:42:02,755 !! 2024-03-21T18:42:02,756 check.warn(importable) 2024-03-21T18:42:02,757 /tmp/pip-build-env-_vxdfzlb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.media' is absent from the `packages` configuration. 2024-03-21T18:42:02,757 !! 2024-03-21T18:42:02,759 ******************************************************************************** 2024-03-21T18:42:02,760 ############################ 2024-03-21T18:42:02,760 # Package would be ignored # 2024-03-21T18:42:02,761 ############################ 2024-03-21T18:42:02,762 Python recognizes 'figeno.gui.build.static.media' as an importable package[^1], 2024-03-21T18:42:02,762 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:42:02,763 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:42:02,764 package, please make sure that 'figeno.gui.build.static.media' is explicitly added 2024-03-21T18:42:02,764 to the `packages` configuration field. 2024-03-21T18:42:02,765 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:42:02,766 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:42:02,767 instead of `find_packages(...)`/`find:`). 2024-03-21T18:42:02,768 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:42:02,769 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:42:02,770 If you don't want 'figeno.gui.build.static.media' to be distributed and are 2024-03-21T18:42:02,771 already explicitly excluding 'figeno.gui.build.static.media' via 2024-03-21T18:42:02,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:42:02,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:42:02,773 combination with a more fine grained `package-data` configuration. 2024-03-21T18:42:02,773 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:42:02,774 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:42:02,780 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:42:02,795 even if it does not contain any `.py` files. 2024-03-21T18:42:02,816 On the other hand, currently there is no concept of package data 2024-03-21T18:42:02,849 directory, all directories are treated like packages. 2024-03-21T18:42:02,856 ******************************************************************************** 2024-03-21T18:42:02,857 !! 2024-03-21T18:42:02,857 check.warn(importable) 2024-03-21T18:42:02,858 copying figeno/data/hg19_chrarms.txt -> build/lib/figeno/data 2024-03-21T18:42:02,858 copying figeno/data/hg19_cytobands.tsv -> build/lib/figeno/data 2024-03-21T18:42:02,859 copying figeno/data/hg19_genes.txt.gz -> build/lib/figeno/data 2024-03-21T18:42:02,859 copying figeno/data/hg38_chrarms.txt -> build/lib/figeno/data 2024-03-21T18:42:02,860 copying figeno/data/hg38_cytobands.tsv -> build/lib/figeno/data 2024-03-21T18:42:02,860 copying figeno/data/hg38_genes.txt.gz -> build/lib/figeno/data 2024-03-21T18:42:02,861 creating build/lib/figeno/gui/build 2024-03-21T18:42:02,861 copying figeno/gui/build/asset-manifest.json -> build/lib/figeno/gui/build 2024-03-21T18:42:02,864 copying figeno/gui/build/figeno_icon.png -> build/lib/figeno/gui/build 2024-03-21T18:42:02,866 copying figeno/gui/build/index.html -> build/lib/figeno/gui/build 2024-03-21T18:42:02,868 copying figeno/gui/build/manifest.json -> build/lib/figeno/gui/build 2024-03-21T18:42:02,870 creating build/lib/figeno/gui/build/static 2024-03-21T18:42:02,871 creating build/lib/figeno/gui/build/static/css 2024-03-21T18:42:02,872 copying figeno/gui/build/static/css/main.a05bb635.css -> build/lib/figeno/gui/build/static/css 2024-03-21T18:42:02,874 copying figeno/gui/build/static/css/main.a05bb635.css.map -> build/lib/figeno/gui/build/static/css 2024-03-21T18:42:02,877 creating build/lib/figeno/gui/build/static/js 2024-03-21T18:42:02,878 copying figeno/gui/build/static/js/main.93a84bf3.js -> build/lib/figeno/gui/build/static/js 2024-03-21T18:42:02,886 copying figeno/gui/build/static/js/main.93a84bf3.js.LICENSE.txt -> build/lib/figeno/gui/build/static/js 2024-03-21T18:42:02,888 copying figeno/gui/build/static/js/main.93a84bf3.js.map -> build/lib/figeno/gui/build/static/js 2024-03-21T18:42:02,909 creating build/lib/figeno/gui/build/static/media 2024-03-21T18:42:02,910 copying figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:42:02,918 copying figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:42:02,922 copying figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:42:02,928 copying figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:42:02,933 copying figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:42:02,968 installing to build/bdist.linux-armv7l/wheel 2024-03-21T18:42:02,969 running install 2024-03-21T18:42:02,993 running install_lib 2024-03-21T18:42:02,997 creating build/bdist.linux-armv7l 2024-03-21T18:42:02,997 creating build/bdist.linux-armv7l/wheel 2024-03-21T18:42:02,999 creating build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,000 copying build/lib/figeno/ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,002 creating build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,003 copying build/lib/figeno/data/hg19_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,006 copying build/lib/figeno/data/hg38_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,009 copying build/lib/figeno/data/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,010 copying build/lib/figeno/data/hg38_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,012 copying build/lib/figeno/data/hg19_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,074 copying build/lib/figeno/data/hg38_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,183 copying build/lib/figeno/data/hg19_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:42:03,185 copying build/lib/figeno/genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,187 copying build/lib/figeno/track_hic.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,190 copying build/lib/figeno/utils.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,192 copying build/lib/figeno/track_genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,194 copying build/lib/figeno/track_ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,196 copying build/lib/figeno/vcf.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,198 copying build/lib/figeno/track_bed.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,200 copying build/lib/figeno/track_coverage.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,202 copying build/lib/figeno/track_copynumber.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,205 copying build/lib/figeno/__init__.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,207 copying build/lib/figeno/track_chr.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,209 copying build/lib/figeno/figeno.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,212 copying build/lib/figeno/track_sv.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,214 copying build/lib/figeno/track_basemodfreq.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,217 copying build/lib/figeno/track_alignments.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,219 copying build/lib/figeno/track_bigwig.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,223 copying build/lib/figeno/bam.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:42:03,226 creating build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:42:03,227 copying build/lib/figeno/gui/gui_server.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:42:03,229 copying build/lib/figeno/gui/gui_browser.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:42:03,231 copying build/lib/figeno/gui/gui_webview.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:42:03,234 copying build/lib/figeno/gui/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:42:03,236 creating build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:42:03,237 copying build/lib/figeno/gui/build/figeno_icon.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:42:03,239 copying build/lib/figeno/gui/build/index.html -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:42:03,241 copying build/lib/figeno/gui/build/asset-manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:42:03,243 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static 2024-03-21T18:42:03,245 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-21T18:42:03,246 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-21T18:42:03,248 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-21T18:42:03,251 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:42:03,252 copying build/lib/figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:42:03,257 copying build/lib/figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:42:03,263 copying build/lib/figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:42:03,270 copying build/lib/figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:42:03,298 copying build/lib/figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:42:03,302 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:42:03,302 copying build/lib/figeno/gui/build/static/js/main.93a84bf3.js.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:42:03,319 copying build/lib/figeno/gui/build/static/js/main.93a84bf3.js -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:42:03,326 copying build/lib/figeno/gui/build/static/js/main.93a84bf3.js.LICENSE.txt -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:42:03,328 copying build/lib/figeno/gui/build/manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:42:03,330 creating build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:42:03,331 copying build/lib/figeno/cli/make.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:42:03,333 copying build/lib/figeno/cli/cli.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:42:03,335 copying build/lib/figeno/cli/gui.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:42:03,337 copying build/lib/figeno/cli/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:42:03,339 copying build/lib/figeno/cli/init.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:42:03,341 running install_egg_info 2024-03-21T18:42:03,345 Copying figeno.egg-info to build/bdist.linux-armv7l/wheel/figeno-1.0.0-py3.11.egg-info 2024-03-21T18:42:03,357 running install_scripts 2024-03-21T18:42:03,375 creating build/bdist.linux-armv7l/wheel/figeno-1.0.0.dist-info/WHEEL 2024-03-21T18:42:03,377 creating '/tmp/pip-wheel-yw7o6wjn/.tmp-j785vne7/figeno-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-21T18:42:03,380 adding 'figeno/__init__.py' 2024-03-21T18:42:03,381 adding 'figeno/ase.py' 2024-03-21T18:42:03,384 adding 'figeno/bam.py' 2024-03-21T18:42:03,386 adding 'figeno/figeno.py' 2024-03-21T18:42:03,388 adding 'figeno/genes.py' 2024-03-21T18:42:03,392 adding 'figeno/track_alignments.py' 2024-03-21T18:42:03,393 adding 'figeno/track_ase.py' 2024-03-21T18:42:03,395 adding 'figeno/track_basemodfreq.py' 2024-03-21T18:42:03,397 adding 'figeno/track_bed.py' 2024-03-21T18:42:03,398 adding 'figeno/track_bigwig.py' 2024-03-21T18:42:03,401 adding 'figeno/track_chr.py' 2024-03-21T18:42:03,403 adding 'figeno/track_copynumber.py' 2024-03-21T18:42:03,405 adding 'figeno/track_coverage.py' 2024-03-21T18:42:03,407 adding 'figeno/track_genes.py' 2024-03-21T18:42:03,409 adding 'figeno/track_hic.py' 2024-03-21T18:42:03,411 adding 'figeno/track_sv.py' 2024-03-21T18:42:03,413 adding 'figeno/utils.py' 2024-03-21T18:42:03,414 adding 'figeno/vcf.py' 2024-03-21T18:42:03,416 adding 'figeno/cli/__init__.py' 2024-03-21T18:42:03,417 adding 'figeno/cli/cli.py' 2024-03-21T18:42:03,418 adding 'figeno/cli/gui.py' 2024-03-21T18:42:03,420 adding 'figeno/cli/init.py' 2024-03-21T18:42:03,421 adding 'figeno/cli/make.py' 2024-03-21T18:42:03,422 adding 'figeno/data/__init__.py' 2024-03-21T18:42:03,423 adding 'figeno/data/hg19_chrarms.txt' 2024-03-21T18:42:03,427 adding 'figeno/data/hg19_cytobands.tsv' 2024-03-21T18:42:03,929 adding 'figeno/data/hg19_genes.txt.gz' 2024-03-21T18:42:03,957 adding 'figeno/data/hg38_chrarms.txt' 2024-03-21T18:42:03,964 adding 'figeno/data/hg38_cytobands.tsv' 2024-03-21T18:42:04,810 adding 'figeno/data/hg38_genes.txt.gz' 2024-03-21T18:42:04,857 adding 'figeno/gui/__init__.py' 2024-03-21T18:42:04,859 adding 'figeno/gui/gui_browser.py' 2024-03-21T18:42:04,860 adding 'figeno/gui/gui_server.py' 2024-03-21T18:42:04,861 adding 'figeno/gui/gui_webview.py' 2024-03-21T18:42:04,863 adding 'figeno/gui/build/asset-manifest.json' 2024-03-21T18:42:04,865 adding 'figeno/gui/build/figeno_icon.png' 2024-03-21T18:42:04,866 adding 'figeno/gui/build/index.html' 2024-03-21T18:42:04,867 adding 'figeno/gui/build/manifest.json' 2024-03-21T18:42:04,869 adding 'figeno/gui/build/static/css/main.a05bb635.css' 2024-03-21T18:42:04,872 adding 'figeno/gui/build/static/css/main.a05bb635.css.map' 2024-03-21T18:42:04,909 adding 'figeno/gui/build/static/js/main.93a84bf3.js' 2024-03-21T18:42:04,912 adding 'figeno/gui/build/static/js/main.93a84bf3.js.LICENSE.txt' 2024-03-21T18:42:05,053 adding 'figeno/gui/build/static/js/main.93a84bf3.js.map' 2024-03-21T18:42:05,091 adding 'figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png' 2024-03-21T18:42:05,099 adding 'figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png' 2024-03-21T18:42:05,128 adding 'figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png' 2024-03-21T18:42:05,148 adding 'figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png' 2024-03-21T18:42:05,384 adding 'figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png' 2024-03-21T18:42:05,401 adding 'figeno-1.0.0.dist-info/LICENSE' 2024-03-21T18:42:05,403 adding 'figeno-1.0.0.dist-info/METADATA' 2024-03-21T18:42:05,404 adding 'figeno-1.0.0.dist-info/WHEEL' 2024-03-21T18:42:05,405 adding 'figeno-1.0.0.dist-info/entry_points.txt' 2024-03-21T18:42:05,406 adding 'figeno-1.0.0.dist-info/top_level.txt' 2024-03-21T18:42:05,407 adding 'figeno-1.0.0.dist-info/RECORD' 2024-03-21T18:42:05,566 removing build/bdist.linux-armv7l/wheel 2024-03-21T18:42:05,706 Building wheel for figeno (pyproject.toml): finished with status 'done' 2024-03-21T18:42:06,011 Created wheel for figeno: filename=figeno-1.0.0-py3-none-any.whl size=14362445 sha256=45b3110c25c2f7b613131d1fe9e2030de18dee2f1c408c207f5dce90e1b9cc92 2024-03-21T18:42:06,013 Stored in directory: /tmp/pip-ephem-wheel-cache-r0nv1f3i/wheels/96/0c/be/36cb8038aba002780f989a4cb580f2a5f56ecaab0a2d497f8a 2024-03-21T18:42:06,030 Successfully built figeno 2024-03-21T18:42:06,371 Removed build tracker: '/tmp/pip-build-tracker-uyvh86mj'