2024-03-21T18:53:34,138 Created temporary directory: /tmp/pip-build-tracker-777e0ydc 2024-03-21T18:53:34,139 Initialized build tracking at /tmp/pip-build-tracker-777e0ydc 2024-03-21T18:53:34,139 Created build tracker: /tmp/pip-build-tracker-777e0ydc 2024-03-21T18:53:34,140 Entered build tracker: /tmp/pip-build-tracker-777e0ydc 2024-03-21T18:53:34,141 Created temporary directory: /tmp/pip-wheel-56hri7ln 2024-03-21T18:53:34,144 Created temporary directory: /tmp/pip-ephem-wheel-cache-klsl0uqk 2024-03-21T18:53:34,171 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T18:53:34,175 2 location(s) to search for versions of figeno: 2024-03-21T18:53:34,175 * https://pypi.org/simple/figeno/ 2024-03-21T18:53:34,175 * https://www.piwheels.org/simple/figeno/ 2024-03-21T18:53:34,176 Fetching project page and analyzing links: https://pypi.org/simple/figeno/ 2024-03-21T18:53:34,176 Getting page https://pypi.org/simple/figeno/ 2024-03-21T18:53:34,178 Found index url https://pypi.org/simple/ 2024-03-21T18:53:34,318 Fetched page https://pypi.org/simple/figeno/ as application/vnd.pypi.simple.v1+json 2024-03-21T18:53:34,321 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/ee/c3/54db836641d4a607bc395ab2a5672923216c04f27d64c4836262babe0677/figeno-0.0.2-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,322 Found link https://files.pythonhosted.org/packages/53/e4/a9bd6b3ec25130d0168be05940cf1053a2c45e6de2ddfaea31ed52b7541c/figeno-0.0.2.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.0.2 2024-03-21T18:53:34,322 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/7d/72/2ad97a122d46f6749cf47e22417a143a62d6486f68f7a854ff24c3cf107f/figeno-0.3.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,323 Found link https://files.pythonhosted.org/packages/ad/b7/9248f8efba4e9c58e5fe317b995dc5c7c89f783bfaab7a87e60a3304f324/figeno-0.3.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.0 2024-03-21T18:53:34,324 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/15/c6/28eb3b1ef01132bf31f692d8d9cff5e3b0097317925ec03976a574b3c45e/figeno-0.3.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,325 Found link https://files.pythonhosted.org/packages/cb/22/db1fba1f5fa16f9ca9ee81f6ab607325f5ebfdce63312a220828aff3963b/figeno-0.3.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.1 2024-03-21T18:53:34,326 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/29/be/106c231fcd52ced3c0e2b3ea11f035c075e13c99a080a5924982aba28830/figeno-1.0.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,327 Found link https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.0 2024-03-21T18:53:34,327 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/3d/05/bfae29040060d48f1e2c3752dc5f862752d97900375229aaf9f53e2e5543/figeno-1.0.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,328 Found link https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.1 2024-03-21T18:53:34,329 Fetching project page and analyzing links: https://www.piwheels.org/simple/figeno/ 2024-03-21T18:53:34,330 Getting page https://www.piwheels.org/simple/figeno/ 2024-03-21T18:53:34,331 Found index url https://www.piwheels.org/simple/ 2024-03-21T18:53:34,652 Fetched page https://www.piwheels.org/simple/figeno/ as text/html 2024-03-21T18:53:34,655 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-1.0.0-py3-none-any.whl#sha256=45b3110c25c2f7b613131d1fe9e2030de18dee2f1c408c207f5dce90e1b9cc92 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,655 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.1-py3-none-any.whl#sha256=0a2fa01b4e74455ad540ac82d0f36fc48571690fb8c1d1cdfeba1112693d143a (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,656 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.0-py3-none-any.whl#sha256=410880abf37efd537f26d07d0c783dbef02bd16e9cf91779167f8de1c5dc7f0f (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,657 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.0.2-py3-none-any.whl#sha256=f6d27564c7ff816ff67439cd0ed3db2adbb6d161ac221f9acb3322b0062632d7 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-21T18:53:34,657 Skipping link: not a file: https://www.piwheels.org/simple/figeno/ 2024-03-21T18:53:34,658 Skipping link: not a file: https://pypi.org/simple/figeno/ 2024-03-21T18:53:34,676 Given no hashes to check 1 links for project 'figeno': discarding no candidates 2024-03-21T18:53:34,695 Collecting figeno==1.0.1 2024-03-21T18:53:34,697 Created temporary directory: /tmp/pip-unpack-fw2h4vti 2024-03-21T18:53:34,915 Downloading figeno-1.0.1.tar.gz (14.4 MB) 2024-03-21T18:53:38,494 Added figeno==1.0.1 from https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-777e0ydc' 2024-03-21T18:53:38,498 Created temporary directory: /tmp/pip-build-env-fh0_rkl3 2024-03-21T18:53:38,504 Installing build dependencies: started 2024-03-21T18:53:38,505 Running command pip subprocess to install build dependencies 2024-03-21T18:53:39,721 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-21T18:53:40,274 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T18:53:42,405 Collecting setuptools>=61.0 2024-03-21T18:53:42,421 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-21T18:53:45,076 Installing collected packages: setuptools 2024-03-21T18:53:47,920 Successfully installed setuptools-69.2.0 2024-03-21T18:53:48,495 Installing build dependencies: finished with status 'done' 2024-03-21T18:53:48,498 Getting requirements to build wheel: started 2024-03-21T18:53:48,500 Running command Getting requirements to build wheel 2024-03-21T18:53:49,291 running egg_info 2024-03-21T18:53:49,295 writing figeno.egg-info/PKG-INFO 2024-03-21T18:53:49,298 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-03-21T18:53:49,300 writing entry points to figeno.egg-info/entry_points.txt 2024-03-21T18:53:49,306 writing requirements to figeno.egg-info/requires.txt 2024-03-21T18:53:49,307 writing top-level names to figeno.egg-info/top_level.txt 2024-03-21T18:53:49,326 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:49,331 reading manifest template 'MANIFEST.in' 2024-03-21T18:53:49,354 adding license file 'LICENSE' 2024-03-21T18:53:49,358 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:49,470 Getting requirements to build wheel: finished with status 'done' 2024-03-21T18:53:49,479 Installing backend dependencies: started 2024-03-21T18:53:49,481 Running command pip subprocess to install backend dependencies 2024-03-21T18:53:50,651 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-21T18:53:51,205 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-21T18:53:51,738 Collecting wheel 2024-03-21T18:53:51,756 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-21T18:53:54,055 Installing collected packages: wheel 2024-03-21T18:53:54,301 Creating /tmp/pip-build-env-fh0_rkl3/normal/local/bin 2024-03-21T18:53:54,304 changing mode of /tmp/pip-build-env-fh0_rkl3/normal/local/bin/wheel to 755 2024-03-21T18:53:54,317 Successfully installed wheel-0.43.0 2024-03-21T18:53:54,858 Installing backend dependencies: finished with status 'done' 2024-03-21T18:53:54,860 Created temporary directory: /tmp/pip-modern-metadata-wtn952ve 2024-03-21T18:53:54,863 Preparing metadata (pyproject.toml): started 2024-03-21T18:53:54,864 Running command Preparing metadata (pyproject.toml) 2024-03-21T18:53:55,698 running dist_info 2024-03-21T18:53:55,703 creating /tmp/pip-modern-metadata-wtn952ve/figeno.egg-info 2024-03-21T18:53:55,707 writing /tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/PKG-INFO 2024-03-21T18:53:55,710 writing dependency_links to /tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/dependency_links.txt 2024-03-21T18:53:55,712 writing entry points to /tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/entry_points.txt 2024-03-21T18:53:55,714 writing requirements to /tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/requires.txt 2024-03-21T18:53:55,715 writing top-level names to /tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/top_level.txt 2024-03-21T18:53:55,716 writing manifest file '/tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:55,738 reading manifest file '/tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:55,740 reading manifest template 'MANIFEST.in' 2024-03-21T18:53:55,753 adding license file 'LICENSE' 2024-03-21T18:53:55,756 writing manifest file '/tmp/pip-modern-metadata-wtn952ve/figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:55,757 creating '/tmp/pip-modern-metadata-wtn952ve/figeno-1.0.1.dist-info' 2024-03-21T18:53:55,920 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-21T18:53:55,926 Source in /tmp/pip-wheel-56hri7ln/figeno_2d640aac4cc3432c87cce63af31d38a1 has version 1.0.1, which satisfies requirement figeno==1.0.1 from https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz 2024-03-21T18:53:55,927 Removed figeno==1.0.1 from https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-777e0ydc' 2024-03-21T18:53:55,932 Created temporary directory: /tmp/pip-unpack-6l3z68__ 2024-03-21T18:53:55,933 Created temporary directory: /tmp/pip-unpack-4l52npw6 2024-03-21T18:53:55,950 Building wheels for collected packages: figeno 2024-03-21T18:53:55,956 Created temporary directory: /tmp/pip-wheel-zc5qo_xt 2024-03-21T18:53:55,956 Destination directory: /tmp/pip-wheel-zc5qo_xt 2024-03-21T18:53:55,959 Building wheel for figeno (pyproject.toml): started 2024-03-21T18:53:55,960 Running command Building wheel for figeno (pyproject.toml) 2024-03-21T18:53:56,731 running bdist_wheel 2024-03-21T18:53:56,747 running build 2024-03-21T18:53:56,748 running build_py 2024-03-21T18:53:56,752 creating build 2024-03-21T18:53:56,753 creating build/lib 2024-03-21T18:53:56,754 creating build/lib/figeno 2024-03-21T18:53:56,755 copying figeno/track_sv.py -> build/lib/figeno 2024-03-21T18:53:56,758 copying figeno/__init__.py -> build/lib/figeno 2024-03-21T18:53:56,760 copying figeno/track_bigwig.py -> build/lib/figeno 2024-03-21T18:53:56,762 copying figeno/track_hic.py -> build/lib/figeno 2024-03-21T18:53:56,764 copying figeno/figeno.py -> build/lib/figeno 2024-03-21T18:53:56,767 copying figeno/genes.py -> build/lib/figeno 2024-03-21T18:53:56,770 copying figeno/track_basemodfreq.py -> build/lib/figeno 2024-03-21T18:53:56,773 copying figeno/track_genes.py -> build/lib/figeno 2024-03-21T18:53:56,775 copying figeno/track_chr.py -> build/lib/figeno 2024-03-21T18:53:56,778 copying figeno/track_ase.py -> build/lib/figeno 2024-03-21T18:53:56,780 copying figeno/ase.py -> build/lib/figeno 2024-03-21T18:53:56,782 copying figeno/bam.py -> build/lib/figeno 2024-03-21T18:53:56,785 copying figeno/track_alignments.py -> build/lib/figeno 2024-03-21T18:53:56,789 copying figeno/track_bed.py -> build/lib/figeno 2024-03-21T18:53:56,791 copying figeno/vcf.py -> build/lib/figeno 2024-03-21T18:53:56,794 copying figeno/track_coverage.py -> build/lib/figeno 2024-03-21T18:53:56,799 copying figeno/utils.py -> build/lib/figeno 2024-03-21T18:53:56,803 copying figeno/track_copynumber.py -> build/lib/figeno 2024-03-21T18:53:56,807 creating build/lib/figeno/data 2024-03-21T18:53:56,809 copying figeno/data/__init__.py -> build/lib/figeno/data 2024-03-21T18:53:56,811 creating build/lib/figeno/cli 2024-03-21T18:53:56,812 copying figeno/cli/__init__.py -> build/lib/figeno/cli 2024-03-21T18:53:56,815 copying figeno/cli/gui.py -> build/lib/figeno/cli 2024-03-21T18:53:56,817 copying figeno/cli/init.py -> build/lib/figeno/cli 2024-03-21T18:53:56,819 copying figeno/cli/make.py -> build/lib/figeno/cli 2024-03-21T18:53:56,821 copying figeno/cli/cli.py -> build/lib/figeno/cli 2024-03-21T18:53:56,824 creating build/lib/figeno/gui 2024-03-21T18:53:56,825 copying figeno/gui/__init__.py -> build/lib/figeno/gui 2024-03-21T18:53:56,826 copying figeno/gui/gui_browser.py -> build/lib/figeno/gui 2024-03-21T18:53:56,829 copying figeno/gui/gui_webview.py -> build/lib/figeno/gui 2024-03-21T18:53:56,831 copying figeno/gui/gui_server.py -> build/lib/figeno/gui 2024-03-21T18:53:56,832 running egg_info 2024-03-21T18:53:56,836 writing figeno.egg-info/PKG-INFO 2024-03-21T18:53:56,838 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-03-21T18:53:56,840 writing entry points to figeno.egg-info/entry_points.txt 2024-03-21T18:53:56,841 writing requirements to figeno.egg-info/requires.txt 2024-03-21T18:53:56,842 writing top-level names to figeno.egg-info/top_level.txt 2024-03-21T18:53:56,852 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:56,855 reading manifest template 'MANIFEST.in' 2024-03-21T18:53:56,865 adding license file 'LICENSE' 2024-03-21T18:53:56,869 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-21T18:53:56,872 /tmp/pip-build-env-fh0_rkl3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build' is absent from the `packages` configuration. 2024-03-21T18:53:56,872 !! 2024-03-21T18:53:56,874 ******************************************************************************** 2024-03-21T18:53:56,874 ############################ 2024-03-21T18:53:56,875 # Package would be ignored # 2024-03-21T18:53:56,875 ############################ 2024-03-21T18:53:56,876 Python recognizes 'figeno.gui.build' as an importable package[^1], 2024-03-21T18:53:56,877 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:53:56,878 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:53:56,878 package, please make sure that 'figeno.gui.build' is explicitly added 2024-03-21T18:53:56,879 to the `packages` configuration field. 2024-03-21T18:53:56,880 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:53:56,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:53:56,881 instead of `find_packages(...)`/`find:`). 2024-03-21T18:53:56,882 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:53:56,883 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:53:56,885 If you don't want 'figeno.gui.build' to be distributed and are 2024-03-21T18:53:56,885 already explicitly excluding 'figeno.gui.build' via 2024-03-21T18:53:56,886 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:53:56,886 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:53:56,887 combination with a more fine grained `package-data` configuration. 2024-03-21T18:53:56,888 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:53:56,889 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:53:56,891 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:53:56,891 even if it does not contain any `.py` files. 2024-03-21T18:53:56,892 On the other hand, currently there is no concept of package data 2024-03-21T18:53:56,892 directory, all directories are treated like packages. 2024-03-21T18:53:56,893 ******************************************************************************** 2024-03-21T18:53:56,894 !! 2024-03-21T18:53:56,895 check.warn(importable) 2024-03-21T18:53:56,895 /tmp/pip-build-env-fh0_rkl3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.css' is absent from the `packages` configuration. 2024-03-21T18:53:56,896 !! 2024-03-21T18:53:56,897 ******************************************************************************** 2024-03-21T18:53:56,897 ############################ 2024-03-21T18:53:56,898 # Package would be ignored # 2024-03-21T18:53:56,898 ############################ 2024-03-21T18:53:56,899 Python recognizes 'figeno.gui.build.static.css' as an importable package[^1], 2024-03-21T18:53:56,899 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:53:56,901 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:53:56,901 package, please make sure that 'figeno.gui.build.static.css' is explicitly added 2024-03-21T18:53:56,902 to the `packages` configuration field. 2024-03-21T18:53:56,904 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:53:56,905 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:53:56,905 instead of `find_packages(...)`/`find:`). 2024-03-21T18:53:56,917 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:53:57,128 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:53:57,144 If you don't want 'figeno.gui.build.static.css' to be distributed and are 2024-03-21T18:53:57,144 already explicitly excluding 'figeno.gui.build.static.css' via 2024-03-21T18:53:57,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:53:57,146 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:53:57,147 combination with a more fine grained `package-data` configuration. 2024-03-21T18:53:57,148 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:53:57,150 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:53:57,152 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:53:57,153 even if it does not contain any `.py` files. 2024-03-21T18:53:57,153 On the other hand, currently there is no concept of package data 2024-03-21T18:53:57,161 directory, all directories are treated like packages. 2024-03-21T18:53:57,162 ******************************************************************************** 2024-03-21T18:53:57,163 !! 2024-03-21T18:53:57,163 check.warn(importable) 2024-03-21T18:53:57,164 /tmp/pip-build-env-fh0_rkl3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.js' is absent from the `packages` configuration. 2024-03-21T18:53:57,164 !! 2024-03-21T18:53:57,166 ******************************************************************************** 2024-03-21T18:53:57,167 ############################ 2024-03-21T18:53:57,167 # Package would be ignored # 2024-03-21T18:53:57,168 ############################ 2024-03-21T18:53:57,169 Python recognizes 'figeno.gui.build.static.js' as an importable package[^1], 2024-03-21T18:53:57,169 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:53:57,170 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:53:57,171 package, please make sure that 'figeno.gui.build.static.js' is explicitly added 2024-03-21T18:53:57,171 to the `packages` configuration field. 2024-03-21T18:53:57,173 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:53:57,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:53:57,174 instead of `find_packages(...)`/`find:`). 2024-03-21T18:53:57,175 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:53:57,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:53:57,177 If you don't want 'figeno.gui.build.static.js' to be distributed and are 2024-03-21T18:53:57,178 already explicitly excluding 'figeno.gui.build.static.js' via 2024-03-21T18:53:57,178 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:53:57,179 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:53:57,179 combination with a more fine grained `package-data` configuration. 2024-03-21T18:53:57,181 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:53:57,182 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:53:57,185 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:53:57,185 even if it does not contain any `.py` files. 2024-03-21T18:53:57,186 On the other hand, currently there is no concept of package data 2024-03-21T18:53:57,187 directory, all directories are treated like packages. 2024-03-21T18:53:57,190 ******************************************************************************** 2024-03-21T18:53:57,259 !! 2024-03-21T18:53:57,306 check.warn(importable) 2024-03-21T18:53:57,362 /tmp/pip-build-env-fh0_rkl3/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.media' is absent from the `packages` configuration. 2024-03-21T18:53:57,443 !! 2024-03-21T18:53:57,447 ******************************************************************************** 2024-03-21T18:53:57,448 ############################ 2024-03-21T18:53:57,448 # Package would be ignored # 2024-03-21T18:53:57,449 ############################ 2024-03-21T18:53:57,450 Python recognizes 'figeno.gui.build.static.media' as an importable package[^1], 2024-03-21T18:53:57,450 but it is absent from setuptools' `packages` configuration. 2024-03-21T18:53:57,452 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-21T18:53:57,452 package, please make sure that 'figeno.gui.build.static.media' is explicitly added 2024-03-21T18:53:57,453 to the `packages` configuration field. 2024-03-21T18:53:57,454 Alternatively, you can also rely on setuptools' discovery methods 2024-03-21T18:53:57,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-21T18:53:57,455 instead of `find_packages(...)`/`find:`). 2024-03-21T18:53:57,457 You can read more about "package discovery" on setuptools documentation page: 2024-03-21T18:53:57,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-21T18:53:57,459 If you don't want 'figeno.gui.build.static.media' to be distributed and are 2024-03-21T18:53:57,459 already explicitly excluding 'figeno.gui.build.static.media' via 2024-03-21T18:53:57,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-21T18:53:57,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-21T18:53:57,461 combination with a more fine grained `package-data` configuration. 2024-03-21T18:53:57,462 You can read more about "package data files" on setuptools documentation page: 2024-03-21T18:53:57,463 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-21T18:53:57,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-21T18:53:57,466 even if it does not contain any `.py` files. 2024-03-21T18:53:57,466 On the other hand, currently there is no concept of package data 2024-03-21T18:53:57,467 directory, all directories are treated like packages. 2024-03-21T18:53:57,467 ******************************************************************************** 2024-03-21T18:53:57,469 !! 2024-03-21T18:53:57,470 check.warn(importable) 2024-03-21T18:53:57,471 copying figeno/data/hg19_chrarms.txt -> build/lib/figeno/data 2024-03-21T18:53:57,472 copying figeno/data/hg19_cytobands.tsv -> build/lib/figeno/data 2024-03-21T18:53:57,473 copying figeno/data/hg19_genes.txt.gz -> build/lib/figeno/data 2024-03-21T18:53:57,474 copying figeno/data/hg38_chrarms.txt -> build/lib/figeno/data 2024-03-21T18:53:57,475 copying figeno/data/hg38_cytobands.tsv -> build/lib/figeno/data 2024-03-21T18:53:57,476 copying figeno/data/hg38_genes.txt.gz -> build/lib/figeno/data 2024-03-21T18:53:57,477 creating build/lib/figeno/gui/build 2024-03-21T18:53:57,478 copying figeno/gui/build/asset-manifest.json -> build/lib/figeno/gui/build 2024-03-21T18:53:57,480 copying figeno/gui/build/figeno_icon.png -> build/lib/figeno/gui/build 2024-03-21T18:53:57,482 copying figeno/gui/build/index.html -> build/lib/figeno/gui/build 2024-03-21T18:53:57,489 copying figeno/gui/build/manifest.json -> build/lib/figeno/gui/build 2024-03-21T18:53:57,489 creating build/lib/figeno/gui/build/static 2024-03-21T18:53:57,490 creating build/lib/figeno/gui/build/static/css 2024-03-21T18:53:57,490 copying figeno/gui/build/static/css/main.a05bb635.css -> build/lib/figeno/gui/build/static/css 2024-03-21T18:53:57,491 copying figeno/gui/build/static/css/main.a05bb635.css.map -> build/lib/figeno/gui/build/static/css 2024-03-21T18:53:57,492 creating build/lib/figeno/gui/build/static/js 2024-03-21T18:53:57,492 copying figeno/gui/build/static/js/main.93a84bf3.js -> build/lib/figeno/gui/build/static/js 2024-03-21T18:53:57,493 copying figeno/gui/build/static/js/main.93a84bf3.js.LICENSE.txt -> build/lib/figeno/gui/build/static/js 2024-03-21T18:53:57,494 copying figeno/gui/build/static/js/main.93a84bf3.js.map -> build/lib/figeno/gui/build/static/js 2024-03-21T18:53:57,527 creating build/lib/figeno/gui/build/static/media 2024-03-21T18:53:57,529 copying figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:53:57,537 copying figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:53:57,542 copying figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:53:57,587 copying figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:53:57,596 copying figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/lib/figeno/gui/build/static/media 2024-03-21T18:53:57,670 installing to build/bdist.linux-armv7l/wheel 2024-03-21T18:53:57,670 running install 2024-03-21T18:53:57,697 running install_lib 2024-03-21T18:53:57,703 creating build/bdist.linux-armv7l 2024-03-21T18:53:57,704 creating build/bdist.linux-armv7l/wheel 2024-03-21T18:53:57,706 creating build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:57,708 copying build/lib/figeno/track_sv.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:57,712 copying build/lib/figeno/__init__.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:57,716 creating build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:57,718 copying build/lib/figeno/data/hg38_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:57,722 copying build/lib/figeno/data/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:57,726 copying build/lib/figeno/data/hg38_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:57,730 copying build/lib/figeno/data/hg19_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:58,068 copying build/lib/figeno/data/hg38_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:58,461 copying build/lib/figeno/data/hg19_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:58,464 copying build/lib/figeno/data/hg19_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-21T18:53:58,468 copying build/lib/figeno/track_bigwig.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,471 copying build/lib/figeno/track_hic.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,477 copying build/lib/figeno/figeno.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,481 copying build/lib/figeno/genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,484 creating build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:53:58,486 copying build/lib/figeno/cli/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:53:58,488 copying build/lib/figeno/cli/gui.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:53:58,491 copying build/lib/figeno/cli/init.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:53:58,494 copying build/lib/figeno/cli/make.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:53:58,496 copying build/lib/figeno/cli/cli.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-21T18:53:58,498 copying build/lib/figeno/track_basemodfreq.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,502 copying build/lib/figeno/track_genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,506 copying build/lib/figeno/track_chr.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,511 copying build/lib/figeno/track_ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,515 copying build/lib/figeno/ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,519 creating build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:53:58,521 creating build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:53:58,523 copying build/lib/figeno/gui/build/index.html -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:53:58,527 copying build/lib/figeno/gui/build/asset-manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:53:58,532 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static 2024-03-21T18:53:58,535 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:53:58,537 copying build/lib/figeno/gui/build/static/js/main.93a84bf3.js -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:53:58,654 copying build/lib/figeno/gui/build/static/js/main.93a84bf3.js.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:53:58,687 copying build/lib/figeno/gui/build/static/js/main.93a84bf3.js.LICENSE.txt -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-21T18:53:58,692 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-21T18:53:58,695 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-21T18:53:58,745 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-21T18:53:58,749 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:53:58,751 copying build/lib/figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:53:58,809 copying build/lib/figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:53:58,815 copying build/lib/figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:53:58,881 copying build/lib/figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:53:58,893 copying build/lib/figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-21T18:53:58,905 copying build/lib/figeno/gui/build/figeno_icon.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:53:58,907 copying build/lib/figeno/gui/build/manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-21T18:53:58,909 copying build/lib/figeno/gui/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:53:58,911 copying build/lib/figeno/gui/gui_browser.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:53:58,914 copying build/lib/figeno/gui/gui_webview.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:53:58,916 copying build/lib/figeno/gui/gui_server.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-21T18:53:58,918 copying build/lib/figeno/bam.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,921 copying build/lib/figeno/track_alignments.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,925 copying build/lib/figeno/track_bed.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,927 copying build/lib/figeno/vcf.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,929 copying build/lib/figeno/track_coverage.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,932 copying build/lib/figeno/utils.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,934 copying build/lib/figeno/track_copynumber.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-21T18:53:58,937 running install_egg_info 2024-03-21T18:53:58,941 Copying figeno.egg-info to build/bdist.linux-armv7l/wheel/figeno-1.0.1-py3.11.egg-info 2024-03-21T18:53:58,954 running install_scripts 2024-03-21T18:53:58,975 creating build/bdist.linux-armv7l/wheel/figeno-1.0.1.dist-info/WHEEL 2024-03-21T18:53:58,977 creating '/tmp/pip-wheel-zc5qo_xt/.tmp-acxrzdaz/figeno-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-21T18:53:58,980 adding 'figeno/__init__.py' 2024-03-21T18:53:58,981 adding 'figeno/ase.py' 2024-03-21T18:53:58,984 adding 'figeno/bam.py' 2024-03-21T18:53:58,987 adding 'figeno/figeno.py' 2024-03-21T18:53:58,989 adding 'figeno/genes.py' 2024-03-21T18:53:58,993 adding 'figeno/track_alignments.py' 2024-03-21T18:53:58,995 adding 'figeno/track_ase.py' 2024-03-21T18:53:58,997 adding 'figeno/track_basemodfreq.py' 2024-03-21T18:53:58,999 adding 'figeno/track_bed.py' 2024-03-21T18:53:59,001 adding 'figeno/track_bigwig.py' 2024-03-21T18:53:59,003 adding 'figeno/track_chr.py' 2024-03-21T18:53:59,006 adding 'figeno/track_copynumber.py' 2024-03-21T18:53:59,008 adding 'figeno/track_coverage.py' 2024-03-21T18:53:59,010 adding 'figeno/track_genes.py' 2024-03-21T18:53:59,013 adding 'figeno/track_hic.py' 2024-03-21T18:53:59,015 adding 'figeno/track_sv.py' 2024-03-21T18:53:59,017 adding 'figeno/utils.py' 2024-03-21T18:53:59,018 adding 'figeno/vcf.py' 2024-03-21T18:53:59,020 adding 'figeno/cli/__init__.py' 2024-03-21T18:53:59,021 adding 'figeno/cli/cli.py' 2024-03-21T18:53:59,022 adding 'figeno/cli/gui.py' 2024-03-21T18:53:59,024 adding 'figeno/cli/init.py' 2024-03-21T18:53:59,025 adding 'figeno/cli/make.py' 2024-03-21T18:53:59,027 adding 'figeno/data/__init__.py' 2024-03-21T18:53:59,028 adding 'figeno/data/hg19_chrarms.txt' 2024-03-21T18:53:59,033 adding 'figeno/data/hg19_cytobands.tsv' 2024-03-21T18:53:59,539 adding 'figeno/data/hg19_genes.txt.gz' 2024-03-21T18:53:59,567 adding 'figeno/data/hg38_chrarms.txt' 2024-03-21T18:53:59,574 adding 'figeno/data/hg38_cytobands.tsv' 2024-03-21T18:54:00,427 adding 'figeno/data/hg38_genes.txt.gz' 2024-03-21T18:54:00,475 adding 'figeno/gui/__init__.py' 2024-03-21T18:54:00,476 adding 'figeno/gui/gui_browser.py' 2024-03-21T18:54:00,478 adding 'figeno/gui/gui_server.py' 2024-03-21T18:54:00,479 adding 'figeno/gui/gui_webview.py' 2024-03-21T18:54:00,482 adding 'figeno/gui/build/asset-manifest.json' 2024-03-21T18:54:00,484 adding 'figeno/gui/build/figeno_icon.png' 2024-03-21T18:54:00,485 adding 'figeno/gui/build/index.html' 2024-03-21T18:54:00,486 adding 'figeno/gui/build/manifest.json' 2024-03-21T18:54:00,489 adding 'figeno/gui/build/static/css/main.a05bb635.css' 2024-03-21T18:54:00,491 adding 'figeno/gui/build/static/css/main.a05bb635.css.map' 2024-03-21T18:54:00,527 adding 'figeno/gui/build/static/js/main.93a84bf3.js' 2024-03-21T18:54:00,531 adding 'figeno/gui/build/static/js/main.93a84bf3.js.LICENSE.txt' 2024-03-21T18:54:00,674 adding 'figeno/gui/build/static/js/main.93a84bf3.js.map' 2024-03-21T18:54:00,712 adding 'figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png' 2024-03-21T18:54:00,720 adding 'figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png' 2024-03-21T18:54:00,749 adding 'figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png' 2024-03-21T18:54:00,770 adding 'figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png' 2024-03-21T18:54:01,007 adding 'figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png' 2024-03-21T18:54:01,025 adding 'figeno-1.0.1.dist-info/LICENSE' 2024-03-21T18:54:01,026 adding 'figeno-1.0.1.dist-info/METADATA' 2024-03-21T18:54:01,027 adding 'figeno-1.0.1.dist-info/WHEEL' 2024-03-21T18:54:01,028 adding 'figeno-1.0.1.dist-info/entry_points.txt' 2024-03-21T18:54:01,030 adding 'figeno-1.0.1.dist-info/top_level.txt' 2024-03-21T18:54:01,031 adding 'figeno-1.0.1.dist-info/RECORD' 2024-03-21T18:54:01,600 removing build/bdist.linux-armv7l/wheel 2024-03-21T18:54:01,755 Building wheel for figeno (pyproject.toml): finished with status 'done' 2024-03-21T18:54:02,079 Created wheel for figeno: filename=figeno-1.0.1-py3-none-any.whl size=14362423 sha256=e49ea00bfb880572dfa26b560f239961c2fa066c497ad03430b3bd10dc57923e 2024-03-21T18:54:02,080 Stored in directory: /tmp/pip-ephem-wheel-cache-klsl0uqk/wheels/14/4d/69/6a0ca88ffd9027d0d5c2f4cab552870b3d2f7b043025600199 2024-03-21T18:54:02,098 Successfully built figeno 2024-03-21T18:54:02,942 Removed build tracker: '/tmp/pip-build-tracker-777e0ydc'