2024-03-22T16:46:49,219 Created temporary directory: /tmp/pip-build-tracker-08zh6qta 2024-03-22T16:46:49,221 Initialized build tracking at /tmp/pip-build-tracker-08zh6qta 2024-03-22T16:46:49,221 Created build tracker: /tmp/pip-build-tracker-08zh6qta 2024-03-22T16:46:49,222 Entered build tracker: /tmp/pip-build-tracker-08zh6qta 2024-03-22T16:46:49,223 Created temporary directory: /tmp/pip-wheel-zuux2m38 2024-03-22T16:46:49,226 Created temporary directory: /tmp/pip-ephem-wheel-cache-ttw__4up 2024-03-22T16:46:49,247 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-22T16:46:49,251 2 location(s) to search for versions of figeno: 2024-03-22T16:46:49,251 * https://pypi.org/simple/figeno/ 2024-03-22T16:46:49,251 * https://www.piwheels.org/simple/figeno/ 2024-03-22T16:46:49,252 Fetching project page and analyzing links: https://pypi.org/simple/figeno/ 2024-03-22T16:46:49,252 Getting page https://pypi.org/simple/figeno/ 2024-03-22T16:46:49,254 Found index url https://pypi.org/simple/ 2024-03-22T16:46:49,470 Fetched page https://pypi.org/simple/figeno/ as application/vnd.pypi.simple.v1+json 2024-03-22T16:46:49,473 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/ee/c3/54db836641d4a607bc395ab2a5672923216c04f27d64c4836262babe0677/figeno-0.0.2-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,474 Found link https://files.pythonhosted.org/packages/53/e4/a9bd6b3ec25130d0168be05940cf1053a2c45e6de2ddfaea31ed52b7541c/figeno-0.0.2.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.0.2 2024-03-22T16:46:49,475 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/7d/72/2ad97a122d46f6749cf47e22417a143a62d6486f68f7a854ff24c3cf107f/figeno-0.3.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,475 Found link https://files.pythonhosted.org/packages/ad/b7/9248f8efba4e9c58e5fe317b995dc5c7c89f783bfaab7a87e60a3304f324/figeno-0.3.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.0 2024-03-22T16:46:49,476 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/15/c6/28eb3b1ef01132bf31f692d8d9cff5e3b0097317925ec03976a574b3c45e/figeno-0.3.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,477 Found link https://files.pythonhosted.org/packages/cb/22/db1fba1f5fa16f9ca9ee81f6ab607325f5ebfdce63312a220828aff3963b/figeno-0.3.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.1 2024-03-22T16:46:49,478 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/29/be/106c231fcd52ced3c0e2b3ea11f035c075e13c99a080a5924982aba28830/figeno-1.0.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,479 Found link https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.0 2024-03-22T16:46:49,480 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/3d/05/bfae29040060d48f1e2c3752dc5f862752d97900375229aaf9f53e2e5543/figeno-1.0.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,481 Found link https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.1 2024-03-22T16:46:49,481 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/60/88/6f39368e503a4fc9949a1c0d6f98b40527662430ac44099bc3995a752926/figeno-1.0.2-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,482 Found link https://files.pythonhosted.org/packages/d7/e4/dd54172a1c380008fbff92ff246a669dbb6074c6c82d02f577f69b09fc47/figeno-1.0.2.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.2 2024-03-22T16:46:49,483 Fetching project page and analyzing links: https://www.piwheels.org/simple/figeno/ 2024-03-22T16:46:49,484 Getting page https://www.piwheels.org/simple/figeno/ 2024-03-22T16:46:49,485 Found index url https://www.piwheels.org/simple/ 2024-03-22T16:46:49,719 Fetched page https://www.piwheels.org/simple/figeno/ as text/html 2024-03-22T16:46:49,722 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-1.0.1-py3-none-any.whl#sha256=e49ea00bfb880572dfa26b560f239961c2fa066c497ad03430b3bd10dc57923e (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,722 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-1.0.0-py3-none-any.whl#sha256=45b3110c25c2f7b613131d1fe9e2030de18dee2f1c408c207f5dce90e1b9cc92 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,723 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.1-py3-none-any.whl#sha256=0a2fa01b4e74455ad540ac82d0f36fc48571690fb8c1d1cdfeba1112693d143a (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,723 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.0-py3-none-any.whl#sha256=410880abf37efd537f26d07d0c783dbef02bd16e9cf91779167f8de1c5dc7f0f (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,724 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.0.2-py3-none-any.whl#sha256=f6d27564c7ff816ff67439cd0ed3db2adbb6d161ac221f9acb3322b0062632d7 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-03-22T16:46:49,724 Skipping link: not a file: https://www.piwheels.org/simple/figeno/ 2024-03-22T16:46:49,725 Skipping link: not a file: https://pypi.org/simple/figeno/ 2024-03-22T16:46:49,744 Given no hashes to check 1 links for project 'figeno': discarding no candidates 2024-03-22T16:46:49,762 Collecting figeno==1.0.2 2024-03-22T16:46:49,764 Created temporary directory: /tmp/pip-unpack-07xxb5gw 2024-03-22T16:46:50,288 Downloading figeno-1.0.2.tar.gz (14.4 MB) 2024-03-22T16:46:54,063 Added figeno==1.0.2 from https://files.pythonhosted.org/packages/d7/e4/dd54172a1c380008fbff92ff246a669dbb6074c6c82d02f577f69b09fc47/figeno-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-08zh6qta' 2024-03-22T16:46:54,067 Created temporary directory: /tmp/pip-build-env-7ubqt3tk 2024-03-22T16:46:54,073 Installing build dependencies: started 2024-03-22T16:46:54,074 Running command pip subprocess to install build dependencies 2024-03-22T16:46:55,726 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-22T16:46:56,268 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-22T16:46:57,810 Collecting setuptools>=61.0 2024-03-22T16:46:57,839 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-22T16:47:00,477 Installing collected packages: setuptools 2024-03-22T16:47:02,882 Successfully installed setuptools-69.2.0 2024-03-22T16:47:03,453 Installing build dependencies: finished with status 'done' 2024-03-22T16:47:03,457 Getting requirements to build wheel: started 2024-03-22T16:47:03,458 Running command Getting requirements to build wheel 2024-03-22T16:47:05,199 running egg_info 2024-03-22T16:47:05,202 writing figeno.egg-info/PKG-INFO 2024-03-22T16:47:05,206 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-03-22T16:47:05,208 writing entry points to figeno.egg-info/entry_points.txt 2024-03-22T16:47:05,210 writing requirements to figeno.egg-info/requires.txt 2024-03-22T16:47:05,211 writing top-level names to figeno.egg-info/top_level.txt 2024-03-22T16:47:05,233 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:05,238 reading manifest template 'MANIFEST.in' 2024-03-22T16:47:05,249 adding license file 'LICENSE' 2024-03-22T16:47:05,253 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:05,363 Getting requirements to build wheel: finished with status 'done' 2024-03-22T16:47:05,373 Installing backend dependencies: started 2024-03-22T16:47:05,374 Running command pip subprocess to install backend dependencies 2024-03-22T16:47:06,894 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-22T16:47:07,481 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-22T16:47:07,996 Collecting wheel 2024-03-22T16:47:08,018 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-22T16:47:10,521 Installing collected packages: wheel 2024-03-22T16:47:10,778 Creating /tmp/pip-build-env-7ubqt3tk/normal/local/bin 2024-03-22T16:47:10,781 changing mode of /tmp/pip-build-env-7ubqt3tk/normal/local/bin/wheel to 755 2024-03-22T16:47:10,793 Successfully installed wheel-0.43.0 2024-03-22T16:47:11,328 Installing backend dependencies: finished with status 'done' 2024-03-22T16:47:11,329 Created temporary directory: /tmp/pip-modern-metadata-_imyurmo 2024-03-22T16:47:11,332 Preparing metadata (pyproject.toml): started 2024-03-22T16:47:11,333 Running command Preparing metadata (pyproject.toml) 2024-03-22T16:47:12,168 running dist_info 2024-03-22T16:47:12,173 creating /tmp/pip-modern-metadata-_imyurmo/figeno.egg-info 2024-03-22T16:47:12,176 writing /tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/PKG-INFO 2024-03-22T16:47:12,180 writing dependency_links to /tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/dependency_links.txt 2024-03-22T16:47:12,181 writing entry points to /tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/entry_points.txt 2024-03-22T16:47:12,183 writing requirements to /tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/requires.txt 2024-03-22T16:47:12,184 writing top-level names to /tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/top_level.txt 2024-03-22T16:47:12,185 writing manifest file '/tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:12,204 reading manifest file '/tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:12,207 reading manifest template 'MANIFEST.in' 2024-03-22T16:47:12,217 adding license file 'LICENSE' 2024-03-22T16:47:12,220 writing manifest file '/tmp/pip-modern-metadata-_imyurmo/figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:12,221 creating '/tmp/pip-modern-metadata-_imyurmo/figeno-1.0.2.dist-info' 2024-03-22T16:47:12,373 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-22T16:47:12,378 Source in /tmp/pip-wheel-zuux2m38/figeno_04582075c28444dab0fb872d0435d0c1 has version 1.0.2, which satisfies requirement figeno==1.0.2 from https://files.pythonhosted.org/packages/d7/e4/dd54172a1c380008fbff92ff246a669dbb6074c6c82d02f577f69b09fc47/figeno-1.0.2.tar.gz 2024-03-22T16:47:12,379 Removed figeno==1.0.2 from https://files.pythonhosted.org/packages/d7/e4/dd54172a1c380008fbff92ff246a669dbb6074c6c82d02f577f69b09fc47/figeno-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-08zh6qta' 2024-03-22T16:47:12,384 Created temporary directory: /tmp/pip-unpack-8hk5nf3l 2024-03-22T16:47:12,385 Created temporary directory: /tmp/pip-unpack-liv4q5v4 2024-03-22T16:47:12,402 Building wheels for collected packages: figeno 2024-03-22T16:47:12,407 Created temporary directory: /tmp/pip-wheel-wv65ogtp 2024-03-22T16:47:12,408 Destination directory: /tmp/pip-wheel-wv65ogtp 2024-03-22T16:47:12,410 Building wheel for figeno (pyproject.toml): started 2024-03-22T16:47:12,412 Running command Building wheel for figeno (pyproject.toml) 2024-03-22T16:47:13,171 running bdist_wheel 2024-03-22T16:47:13,187 running build 2024-03-22T16:47:13,188 running build_py 2024-03-22T16:47:13,193 creating build 2024-03-22T16:47:13,193 creating build/lib 2024-03-22T16:47:13,194 creating build/lib/figeno 2024-03-22T16:47:13,196 copying figeno/figeno.py -> build/lib/figeno 2024-03-22T16:47:13,199 copying figeno/track_basemodfreq.py -> build/lib/figeno 2024-03-22T16:47:13,202 copying figeno/track_sv.py -> build/lib/figeno 2024-03-22T16:47:13,204 copying figeno/track_alignments.py -> build/lib/figeno 2024-03-22T16:47:13,207 copying figeno/track_ase.py -> build/lib/figeno 2024-03-22T16:47:13,210 copying figeno/track_chr.py -> build/lib/figeno 2024-03-22T16:47:13,212 copying figeno/track_copynumber.py -> build/lib/figeno 2024-03-22T16:47:13,430 copying figeno/track_coverage.py -> build/lib/figeno 2024-03-22T16:47:13,432 copying figeno/__init__.py -> build/lib/figeno 2024-03-22T16:47:13,435 copying figeno/utils.py -> build/lib/figeno 2024-03-22T16:47:13,438 copying figeno/track_genes.py -> build/lib/figeno 2024-03-22T16:47:13,440 copying figeno/genes.py -> build/lib/figeno 2024-03-22T16:47:13,443 copying figeno/track_hic.py -> build/lib/figeno 2024-03-22T16:47:13,446 copying figeno/track_bigwig.py -> build/lib/figeno 2024-03-22T16:47:13,448 copying figeno/ase.py -> build/lib/figeno 2024-03-22T16:47:13,450 copying figeno/vcf.py -> build/lib/figeno 2024-03-22T16:47:13,452 copying figeno/bam.py -> build/lib/figeno 2024-03-22T16:47:13,455 copying figeno/track_bed.py -> build/lib/figeno 2024-03-22T16:47:13,457 creating build/lib/figeno/data 2024-03-22T16:47:13,458 copying figeno/data/__init__.py -> build/lib/figeno/data 2024-03-22T16:47:13,460 creating build/lib/figeno/cli 2024-03-22T16:47:13,461 copying figeno/cli/gui.py -> build/lib/figeno/cli 2024-03-22T16:47:13,463 copying figeno/cli/__init__.py -> build/lib/figeno/cli 2024-03-22T16:47:13,464 copying figeno/cli/init.py -> build/lib/figeno/cli 2024-03-22T16:47:13,466 copying figeno/cli/cli.py -> build/lib/figeno/cli 2024-03-22T16:47:13,468 copying figeno/cli/make.py -> build/lib/figeno/cli 2024-03-22T16:47:13,470 creating build/lib/figeno/gui 2024-03-22T16:47:13,471 copying figeno/gui/__init__.py -> build/lib/figeno/gui 2024-03-22T16:47:13,473 copying figeno/gui/gui_webview.py -> build/lib/figeno/gui 2024-03-22T16:47:13,475 copying figeno/gui/gui_server.py -> build/lib/figeno/gui 2024-03-22T16:47:13,477 copying figeno/gui/gui_browser.py -> build/lib/figeno/gui 2024-03-22T16:47:13,479 running egg_info 2024-03-22T16:47:13,483 writing figeno.egg-info/PKG-INFO 2024-03-22T16:47:13,486 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-03-22T16:47:13,487 writing entry points to figeno.egg-info/entry_points.txt 2024-03-22T16:47:13,489 writing requirements to figeno.egg-info/requires.txt 2024-03-22T16:47:13,490 writing top-level names to figeno.egg-info/top_level.txt 2024-03-22T16:47:13,501 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:13,504 reading manifest template 'MANIFEST.in' 2024-03-22T16:47:13,516 adding license file 'LICENSE' 2024-03-22T16:47:13,519 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-03-22T16:47:13,522 /tmp/pip-build-env-7ubqt3tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build' is absent from the `packages` configuration. 2024-03-22T16:47:13,523 !! 2024-03-22T16:47:13,524 ******************************************************************************** 2024-03-22T16:47:13,525 ############################ 2024-03-22T16:47:13,525 # Package would be ignored # 2024-03-22T16:47:13,526 ############################ 2024-03-22T16:47:13,526 Python recognizes 'figeno.gui.build' as an importable package[^1], 2024-03-22T16:47:13,527 but it is absent from setuptools' `packages` configuration. 2024-03-22T16:47:13,528 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-22T16:47:13,529 package, please make sure that 'figeno.gui.build' is explicitly added 2024-03-22T16:47:13,529 to the `packages` configuration field. 2024-03-22T16:47:13,531 Alternatively, you can also rely on setuptools' discovery methods 2024-03-22T16:47:13,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-22T16:47:13,532 instead of `find_packages(...)`/`find:`). 2024-03-22T16:47:13,533 You can read more about "package discovery" on setuptools documentation page: 2024-03-22T16:47:13,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-22T16:47:13,535 If you don't want 'figeno.gui.build' to be distributed and are 2024-03-22T16:47:13,536 already explicitly excluding 'figeno.gui.build' via 2024-03-22T16:47:13,537 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-22T16:47:13,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-22T16:47:13,538 combination with a more fine grained `package-data` configuration. 2024-03-22T16:47:13,539 You can read more about "package data files" on setuptools documentation page: 2024-03-22T16:47:13,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-22T16:47:13,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-22T16:47:13,543 even if it does not contain any `.py` files. 2024-03-22T16:47:13,543 On the other hand, currently there is no concept of package data 2024-03-22T16:47:13,544 directory, all directories are treated like packages. 2024-03-22T16:47:13,544 ******************************************************************************** 2024-03-22T16:47:13,546 !! 2024-03-22T16:47:13,546 check.warn(importable) 2024-03-22T16:47:13,547 /tmp/pip-build-env-7ubqt3tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.css' is absent from the `packages` configuration. 2024-03-22T16:47:13,548 !! 2024-03-22T16:47:13,549 ******************************************************************************** 2024-03-22T16:47:13,549 ############################ 2024-03-22T16:47:13,550 # Package would be ignored # 2024-03-22T16:47:13,550 ############################ 2024-03-22T16:47:13,551 Python recognizes 'figeno.gui.build.static.css' as an importable package[^1], 2024-03-22T16:47:13,552 but it is absent from setuptools' `packages` configuration. 2024-03-22T16:47:13,553 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-22T16:47:13,553 package, please make sure that 'figeno.gui.build.static.css' is explicitly added 2024-03-22T16:47:13,554 to the `packages` configuration field. 2024-03-22T16:47:13,555 Alternatively, you can also rely on setuptools' discovery methods 2024-03-22T16:47:13,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-22T16:47:13,556 instead of `find_packages(...)`/`find:`). 2024-03-22T16:47:13,618 You can read more about "package discovery" on setuptools documentation page: 2024-03-22T16:47:13,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-22T16:47:13,815 If you don't want 'figeno.gui.build.static.css' to be distributed and are 2024-03-22T16:47:13,815 already explicitly excluding 'figeno.gui.build.static.css' via 2024-03-22T16:47:13,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-22T16:47:13,817 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-22T16:47:13,818 combination with a more fine grained `package-data` configuration. 2024-03-22T16:47:13,820 You can read more about "package data files" on setuptools documentation page: 2024-03-22T16:47:13,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-22T16:47:13,825 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-22T16:47:13,826 even if it does not contain any `.py` files. 2024-03-22T16:47:13,827 On the other hand, currently there is no concept of package data 2024-03-22T16:47:13,827 directory, all directories are treated like packages. 2024-03-22T16:47:13,829 ******************************************************************************** 2024-03-22T16:47:13,831 !! 2024-03-22T16:47:13,831 check.warn(importable) 2024-03-22T16:47:13,832 /tmp/pip-build-env-7ubqt3tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.js' is absent from the `packages` configuration. 2024-03-22T16:47:13,832 !! 2024-03-22T16:47:13,834 ******************************************************************************** 2024-03-22T16:47:13,834 ############################ 2024-03-22T16:47:13,835 # Package would be ignored # 2024-03-22T16:47:13,835 ############################ 2024-03-22T16:47:13,836 Python recognizes 'figeno.gui.build.static.js' as an importable package[^1], 2024-03-22T16:47:13,836 but it is absent from setuptools' `packages` configuration. 2024-03-22T16:47:13,838 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-22T16:47:13,838 package, please make sure that 'figeno.gui.build.static.js' is explicitly added 2024-03-22T16:47:13,839 to the `packages` configuration field. 2024-03-22T16:47:13,840 Alternatively, you can also rely on setuptools' discovery methods 2024-03-22T16:47:13,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-22T16:47:13,842 instead of `find_packages(...)`/`find:`). 2024-03-22T16:47:13,843 You can read more about "package discovery" on setuptools documentation page: 2024-03-22T16:47:13,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-22T16:47:13,846 If you don't want 'figeno.gui.build.static.js' to be distributed and are 2024-03-22T16:47:13,847 already explicitly excluding 'figeno.gui.build.static.js' via 2024-03-22T16:47:13,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-22T16:47:13,848 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-22T16:47:13,849 combination with a more fine grained `package-data` configuration. 2024-03-22T16:47:13,851 You can read more about "package data files" on setuptools documentation page: 2024-03-22T16:47:13,852 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-22T16:47:13,854 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-22T16:47:13,855 even if it does not contain any `.py` files. 2024-03-22T16:47:13,855 On the other hand, currently there is no concept of package data 2024-03-22T16:47:13,856 directory, all directories are treated like packages. 2024-03-22T16:47:13,857 ******************************************************************************** 2024-03-22T16:47:13,858 !! 2024-03-22T16:47:13,859 check.warn(importable) 2024-03-22T16:47:13,860 /tmp/pip-build-env-7ubqt3tk/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.media' is absent from the `packages` configuration. 2024-03-22T16:47:13,860 !! 2024-03-22T16:47:13,862 ******************************************************************************** 2024-03-22T16:47:13,863 ############################ 2024-03-22T16:47:13,864 # Package would be ignored # 2024-03-22T16:47:13,865 ############################ 2024-03-22T16:47:13,866 Python recognizes 'figeno.gui.build.static.media' as an importable package[^1], 2024-03-22T16:47:13,868 but it is absent from setuptools' `packages` configuration. 2024-03-22T16:47:13,870 This leads to an ambiguous overall configuration. If you want to distribute this 2024-03-22T16:47:13,871 package, please make sure that 'figeno.gui.build.static.media' is explicitly added 2024-03-22T16:47:13,872 to the `packages` configuration field. 2024-03-22T16:47:13,874 Alternatively, you can also rely on setuptools' discovery methods 2024-03-22T16:47:13,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-03-22T16:47:13,882 instead of `find_packages(...)`/`find:`). 2024-03-22T16:47:13,941 You can read more about "package discovery" on setuptools documentation page: 2024-03-22T16:47:14,071 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-03-22T16:47:14,125 If you don't want 'figeno.gui.build.static.media' to be distributed and are 2024-03-22T16:47:14,129 already explicitly excluding 'figeno.gui.build.static.media' via 2024-03-22T16:47:14,129 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-03-22T16:47:14,130 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-03-22T16:47:14,130 combination with a more fine grained `package-data` configuration. 2024-03-22T16:47:14,131 You can read more about "package data files" on setuptools documentation page: 2024-03-22T16:47:14,132 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-03-22T16:47:14,134 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-03-22T16:47:14,134 even if it does not contain any `.py` files. 2024-03-22T16:47:14,135 On the other hand, currently there is no concept of package data 2024-03-22T16:47:14,135 directory, all directories are treated like packages. 2024-03-22T16:47:14,136 ******************************************************************************** 2024-03-22T16:47:14,137 !! 2024-03-22T16:47:14,138 check.warn(importable) 2024-03-22T16:47:14,138 copying figeno/data/hg19_chrarms.txt -> build/lib/figeno/data 2024-03-22T16:47:14,139 copying figeno/data/hg19_cytobands.tsv -> build/lib/figeno/data 2024-03-22T16:47:14,140 copying figeno/data/hg19_genes.txt.gz -> build/lib/figeno/data 2024-03-22T16:47:14,141 copying figeno/data/hg38_chrarms.txt -> build/lib/figeno/data 2024-03-22T16:47:14,142 copying figeno/data/hg38_cytobands.tsv -> build/lib/figeno/data 2024-03-22T16:47:14,142 copying figeno/data/hg38_genes.txt.gz -> build/lib/figeno/data 2024-03-22T16:47:14,143 creating build/lib/figeno/gui/build 2024-03-22T16:47:14,144 copying figeno/gui/build/asset-manifest.json -> build/lib/figeno/gui/build 2024-03-22T16:47:14,144 copying figeno/gui/build/figeno_icon.png -> build/lib/figeno/gui/build 2024-03-22T16:47:14,145 copying figeno/gui/build/index.html -> build/lib/figeno/gui/build 2024-03-22T16:47:14,146 copying figeno/gui/build/manifest.json -> build/lib/figeno/gui/build 2024-03-22T16:47:14,146 creating build/lib/figeno/gui/build/static 2024-03-22T16:47:14,147 creating build/lib/figeno/gui/build/static/css 2024-03-22T16:47:14,149 copying figeno/gui/build/static/css/main.a05bb635.css -> build/lib/figeno/gui/build/static/css 2024-03-22T16:47:14,154 copying figeno/gui/build/static/css/main.a05bb635.css.map -> build/lib/figeno/gui/build/static/css 2024-03-22T16:47:14,157 creating build/lib/figeno/gui/build/static/js 2024-03-22T16:47:14,158 copying figeno/gui/build/static/js/main.b110505b.js -> build/lib/figeno/gui/build/static/js 2024-03-22T16:47:14,381 copying figeno/gui/build/static/js/main.b110505b.js.LICENSE.txt -> build/lib/figeno/gui/build/static/js 2024-03-22T16:47:14,384 copying figeno/gui/build/static/js/main.b110505b.js.map -> build/lib/figeno/gui/build/static/js 2024-03-22T16:47:14,478 creating build/lib/figeno/gui/build/static/media 2024-03-22T16:47:14,479 copying figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/lib/figeno/gui/build/static/media 2024-03-22T16:47:14,566 copying figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/lib/figeno/gui/build/static/media 2024-03-22T16:47:14,572 copying figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/lib/figeno/gui/build/static/media 2024-03-22T16:47:14,582 copying figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/lib/figeno/gui/build/static/media 2024-03-22T16:47:14,590 copying figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/lib/figeno/gui/build/static/media 2024-03-22T16:47:14,701 installing to build/bdist.linux-armv7l/wheel 2024-03-22T16:47:14,702 running install 2024-03-22T16:47:14,747 running install_lib 2024-03-22T16:47:14,754 creating build/bdist.linux-armv7l 2024-03-22T16:47:14,754 creating build/bdist.linux-armv7l/wheel 2024-03-22T16:47:14,757 creating build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,758 copying build/lib/figeno/figeno.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,761 copying build/lib/figeno/track_basemodfreq.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,764 creating build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-22T16:47:14,766 copying build/lib/figeno/cli/gui.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-22T16:47:14,768 copying build/lib/figeno/cli/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-22T16:47:14,770 copying build/lib/figeno/cli/init.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-22T16:47:14,772 copying build/lib/figeno/cli/cli.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-22T16:47:14,774 copying build/lib/figeno/cli/make.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-03-22T16:47:14,776 copying build/lib/figeno/track_sv.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,779 copying build/lib/figeno/track_alignments.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,783 copying build/lib/figeno/track_ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,785 copying build/lib/figeno/track_chr.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,790 copying build/lib/figeno/track_copynumber.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,793 copying build/lib/figeno/track_coverage.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,796 copying build/lib/figeno/__init__.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,798 copying build/lib/figeno/utils.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,801 copying build/lib/figeno/track_genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,805 copying build/lib/figeno/genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,808 copying build/lib/figeno/track_hic.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:14,812 creating build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-22T16:47:14,814 creating build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-22T16:47:14,815 copying build/lib/figeno/gui/build/index.html -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-22T16:47:14,818 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static 2024-03-22T16:47:14,820 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-22T16:47:14,821 copying build/lib/figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-22T16:47:14,825 copying build/lib/figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-22T16:47:14,834 copying build/lib/figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-22T16:47:14,846 copying build/lib/figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-22T16:47:14,855 copying build/lib/figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-03-22T16:47:14,957 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-22T16:47:14,958 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-22T16:47:14,961 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-03-22T16:47:14,965 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-22T16:47:14,966 copying build/lib/figeno/gui/build/static/js/main.b110505b.js -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-22T16:47:14,979 copying build/lib/figeno/gui/build/static/js/main.b110505b.js.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-22T16:47:15,046 copying build/lib/figeno/gui/build/static/js/main.b110505b.js.LICENSE.txt -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-03-22T16:47:15,047 copying build/lib/figeno/gui/build/figeno_icon.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-22T16:47:15,049 copying build/lib/figeno/gui/build/asset-manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-22T16:47:15,051 copying build/lib/figeno/gui/build/manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-03-22T16:47:15,053 copying build/lib/figeno/gui/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-22T16:47:15,055 copying build/lib/figeno/gui/gui_webview.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-22T16:47:15,057 copying build/lib/figeno/gui/gui_server.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-22T16:47:15,059 copying build/lib/figeno/gui/gui_browser.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-03-22T16:47:15,062 creating build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,063 copying build/lib/figeno/data/hg19_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,065 copying build/lib/figeno/data/hg19_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,067 copying build/lib/figeno/data/hg38_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,354 copying build/lib/figeno/data/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,357 copying build/lib/figeno/data/hg38_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,360 copying build/lib/figeno/data/hg38_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,362 copying build/lib/figeno/data/hg19_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-03-22T16:47:15,473 copying build/lib/figeno/track_bigwig.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:15,477 copying build/lib/figeno/ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:15,480 copying build/lib/figeno/vcf.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:15,483 copying build/lib/figeno/bam.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:15,487 copying build/lib/figeno/track_bed.py -> build/bdist.linux-armv7l/wheel/figeno 2024-03-22T16:47:15,490 running install_egg_info 2024-03-22T16:47:15,497 Copying figeno.egg-info to build/bdist.linux-armv7l/wheel/figeno-1.0.2-py3.11.egg-info 2024-03-22T16:47:15,518 running install_scripts 2024-03-22T16:47:15,763 creating build/bdist.linux-armv7l/wheel/figeno-1.0.2.dist-info/WHEEL 2024-03-22T16:47:15,767 creating '/tmp/pip-wheel-wv65ogtp/.tmp-tn_5v4l7/figeno-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-22T16:47:15,770 adding 'figeno/__init__.py' 2024-03-22T16:47:15,773 adding 'figeno/ase.py' 2024-03-22T16:47:15,776 adding 'figeno/bam.py' 2024-03-22T16:47:15,779 adding 'figeno/figeno.py' 2024-03-22T16:47:15,781 adding 'figeno/genes.py' 2024-03-22T16:47:15,785 adding 'figeno/track_alignments.py' 2024-03-22T16:47:15,788 adding 'figeno/track_ase.py' 2024-03-22T16:47:15,790 adding 'figeno/track_basemodfreq.py' 2024-03-22T16:47:15,792 adding 'figeno/track_bed.py' 2024-03-22T16:47:15,794 adding 'figeno/track_bigwig.py' 2024-03-22T16:47:15,797 adding 'figeno/track_chr.py' 2024-03-22T16:47:15,800 adding 'figeno/track_copynumber.py' 2024-03-22T16:47:15,802 adding 'figeno/track_coverage.py' 2024-03-22T16:47:15,804 adding 'figeno/track_genes.py' 2024-03-22T16:47:15,806 adding 'figeno/track_hic.py' 2024-03-22T16:47:15,809 adding 'figeno/track_sv.py' 2024-03-22T16:47:15,811 adding 'figeno/utils.py' 2024-03-22T16:47:15,813 adding 'figeno/vcf.py' 2024-03-22T16:47:15,815 adding 'figeno/cli/__init__.py' 2024-03-22T16:47:15,817 adding 'figeno/cli/cli.py' 2024-03-22T16:47:15,819 adding 'figeno/cli/gui.py' 2024-03-22T16:47:15,821 adding 'figeno/cli/init.py' 2024-03-22T16:47:15,823 adding 'figeno/cli/make.py' 2024-03-22T16:47:15,825 adding 'figeno/data/__init__.py' 2024-03-22T16:47:15,827 adding 'figeno/data/hg19_chrarms.txt' 2024-03-22T16:47:15,831 adding 'figeno/data/hg19_cytobands.tsv' 2024-03-22T16:47:16,337 adding 'figeno/data/hg19_genes.txt.gz' 2024-03-22T16:47:16,366 adding 'figeno/data/hg38_chrarms.txt' 2024-03-22T16:47:16,374 adding 'figeno/data/hg38_cytobands.tsv' 2024-03-22T16:47:17,225 adding 'figeno/data/hg38_genes.txt.gz' 2024-03-22T16:47:17,273 adding 'figeno/gui/__init__.py' 2024-03-22T16:47:17,275 adding 'figeno/gui/gui_browser.py' 2024-03-22T16:47:17,277 adding 'figeno/gui/gui_server.py' 2024-03-22T16:47:17,279 adding 'figeno/gui/gui_webview.py' 2024-03-22T16:47:17,281 adding 'figeno/gui/build/asset-manifest.json' 2024-03-22T16:47:17,283 adding 'figeno/gui/build/figeno_icon.png' 2024-03-22T16:47:17,285 adding 'figeno/gui/build/index.html' 2024-03-22T16:47:17,287 adding 'figeno/gui/build/manifest.json' 2024-03-22T16:47:17,290 adding 'figeno/gui/build/static/css/main.a05bb635.css' 2024-03-22T16:47:17,293 adding 'figeno/gui/build/static/css/main.a05bb635.css.map' 2024-03-22T16:47:17,330 adding 'figeno/gui/build/static/js/main.b110505b.js' 2024-03-22T16:47:17,333 adding 'figeno/gui/build/static/js/main.b110505b.js.LICENSE.txt' 2024-03-22T16:47:17,475 adding 'figeno/gui/build/static/js/main.b110505b.js.map' 2024-03-22T16:47:17,513 adding 'figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png' 2024-03-22T16:47:17,522 adding 'figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png' 2024-03-22T16:47:17,552 adding 'figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png' 2024-03-22T16:47:17,572 adding 'figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png' 2024-03-22T16:47:17,810 adding 'figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png' 2024-03-22T16:47:17,828 adding 'figeno-1.0.2.dist-info/LICENSE' 2024-03-22T16:47:17,831 adding 'figeno-1.0.2.dist-info/METADATA' 2024-03-22T16:47:17,832 adding 'figeno-1.0.2.dist-info/WHEEL' 2024-03-22T16:47:17,834 adding 'figeno-1.0.2.dist-info/entry_points.txt' 2024-03-22T16:47:17,835 adding 'figeno-1.0.2.dist-info/top_level.txt' 2024-03-22T16:47:17,837 adding 'figeno-1.0.2.dist-info/RECORD' 2024-03-22T16:47:18,377 removing build/bdist.linux-armv7l/wheel 2024-03-22T16:47:18,548 Building wheel for figeno (pyproject.toml): finished with status 'done' 2024-03-22T16:47:18,881 Created wheel for figeno: filename=figeno-1.0.2-py3-none-any.whl size=14362420 sha256=c37df1e1f018e0ff05daf085b8974bab9909cef7e234ba7f50dd7cb3d39ed3f1 2024-03-22T16:47:18,883 Stored in directory: /tmp/pip-ephem-wheel-cache-ttw__4up/wheels/6a/f8/10/f74830fa6e0d2e9077b431e39efae3e01715a7b94cf0e0ed14 2024-03-22T16:47:18,900 Successfully built figeno 2024-03-22T16:47:19,567 Removed build tracker: '/tmp/pip-build-tracker-08zh6qta'