2024-03-25T18:02:03,187 Created temporary directory: /tmp/pip-build-tracker-isn143lg
2024-03-25T18:02:03,188 Initialized build tracking at /tmp/pip-build-tracker-isn143lg
2024-03-25T18:02:03,189 Created build tracker: /tmp/pip-build-tracker-isn143lg
2024-03-25T18:02:03,189 Entered build tracker: /tmp/pip-build-tracker-isn143lg
2024-03-25T18:02:03,190 Created temporary directory: /tmp/pip-wheel-gqu5up4_
2024-03-25T18:02:03,193 Created temporary directory: /tmp/pip-ephem-wheel-cache-i55mvj2e
2024-03-25T18:02:03,219 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-25T18:02:03,223 2 location(s) to search for versions of carrot-cdm:
2024-03-25T18:02:03,223 * https://pypi.org/simple/carrot-cdm/
2024-03-25T18:02:03,223 * https://www.piwheels.org/simple/carrot-cdm/
2024-03-25T18:02:03,223 Fetching project page and analyzing links: https://pypi.org/simple/carrot-cdm/
2024-03-25T18:02:03,224 Getting page https://pypi.org/simple/carrot-cdm/
2024-03-25T18:02:03,226 Found index url https://pypi.org/simple/
2024-03-25T18:02:03,362 Fetched page https://pypi.org/simple/carrot-cdm/ as application/vnd.pypi.simple.v1+json
2024-03-25T18:02:03,369   Found link https://files.pythonhosted.org/packages/cf/02/b81bc7e4313c59e0668d3ec5f76488f039d51e1a8b923dc5ac5dc8f4d756/carrot-cdm-0.0.0.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.0.0
2024-03-25T18:02:03,369   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/4e/8d/e709b8aa4bc9df1526cbb30fe4c71d3e507df3c0b0f824bbee7675a6e06d/carrot_cdm-0.0.0-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,370   Found link https://files.pythonhosted.org/packages/0e/e3/affc81e61878436f7d2c66b958f6eb1f0e33cc19348e004be7bc52985c1e/carrot-cdm-0.6.0.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.0
2024-03-25T18:02:03,371   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/82/dd/4fb04cc3f5c1c362d7859c990e95d3f58c3ebfefa26c95b7e17f7b4b7b7e/carrot_cdm-0.6.0-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,372   Found link https://files.pythonhosted.org/packages/b8/79/c84342f579c70b417a54072015fcbae71275277a585915438f88643a6887/carrot-cdm-0.6.1.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.1
2024-03-25T18:02:03,373   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/94/cf/0b0bf50f4b6cf2819f48e1489f9be5abaac7dbc4d433e0c329f696bc9912/carrot_cdm-0.6.1-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,374   Found link https://files.pythonhosted.org/packages/d2/e6/35a83c38911f022eef82b933a1e7610cfe422dbd54b2cd8e309137129098/carrot-cdm-0.6.2.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.2
2024-03-25T18:02:03,374   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/98/52/79da4ead031613a7771f1a81475820d6882beda6b38aadaf4c6dd53e2d3e/carrot_cdm-0.6.2-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,375   Found link https://files.pythonhosted.org/packages/23/b0/db2a8fc547b33b3fc771c8d6279f2fb8b5243404e8d22102725761b475b0/carrot-cdm-0.6.3.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.3
2024-03-25T18:02:03,376   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/c3/b8/434e4d5bd0e0e2796f8d2c964b4c3a013fd9aedbdb49344103c3e343267b/carrot_cdm-0.6.3-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,377   Found link https://files.pythonhosted.org/packages/b1/83/5de1b6064fb07a93efc463fe247a858b91a8a2f1fcca364608cae7a90a66/carrot-cdm-0.6.4.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.4
2024-03-25T18:02:03,378   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/bd/8b/26a705e135ae9a0ed826a82d56c85fbe9107e0bf72b8771877bcf5f8ef73/carrot_cdm-0.6.4-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,379   Found link https://files.pythonhosted.org/packages/6d/e2/1087ac4e72fae3be3fe6cc0ea691ef9c788bc85b53626a2c0b143851af64/carrot-cdm-0.6.5.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.5
2024-03-25T18:02:03,380   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/67/e8/b742af08f4d537d916d1d7c45c6b8e98a7bd75cf1f5aae4c6d5f51101f7f/carrot_cdm-0.6.5-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,380   Found link https://files.pythonhosted.org/packages/13/8f/3d15d22e51b15907a14ed8060d6b2d0dd64f1f87943a74202c18c1fda59a/carrot-cdm-0.6.6.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.6
2024-03-25T18:02:03,381   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/96/78/15a009f5a19360a22734921aa856187b7febb29b41b3e670b5ae9f5c2e40/carrot_cdm-0.6.6-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,382   Found link https://files.pythonhosted.org/packages/cd/c5/47490003c83c6e1ad6cf0d5e27d5be52aab1fb71467a07a6ae25f11a5d57/carrot-cdm-0.6.6.1.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.6.1
2024-03-25T18:02:03,382   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/92/ab/ca06891004f07d8507253df57106450006c7bc3efa9484b6e39314d7ba74/carrot_cdm-0.6.6.1-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,383   Found link https://files.pythonhosted.org/packages/77/04/7016325d3b2128c51e9b60fe0bd8b37bd99130c5f8a515066324ce586d94/carrot-cdm-0.6.7.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.7
2024-03-25T18:02:03,384   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/c2/4b/9375e7641ba0846edd5b7606ce555b43fc27f48ac0b6864a24178913897a/carrot_cdm-0.6.7-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,385   Found link https://files.pythonhosted.org/packages/13/0f/8322b12f037278f514efe7a55415155cce52983323874f7a5de81be6e7ce/carrot-cdm-0.6.8.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.8
2024-03-25T18:02:03,386   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/6d/83/daba2c6f8e2ef11d44b156a7b2221a3f467032277f1266453c7df4d78c21/carrot_cdm-0.6.8-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,386   Found link https://files.pythonhosted.org/packages/fb/4e/4cf8cdaf1e6e5b7a07489f71f2184b033be631470c7f5a010f20bf3d0e0e/carrot-cdm-0.6.9.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.9
2024-03-25T18:02:03,387   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/9f/47/d5e84984c21212d07f8f2dbe57268cceccf89f93cb65b56a22462fba5857/carrot_cdm-0.6.9-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,388   Found link https://files.pythonhosted.org/packages/c7/d2/33aa81975470e5dce281915101d9c46fd86800a63ca94a386a627d2c382e/carrot-cdm-0.6.10.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.10
2024-03-25T18:02:03,389   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/59/66/5041c26ae96743f54514f08e35dcfa624113e3b76cbe3768aabace867de0/carrot_cdm-0.6.10-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,390   Found link https://files.pythonhosted.org/packages/ad/ae/08d01034f4286737b89cf43085c508ccf6710c899fdc30e40a3655522aaf/carrot-cdm-0.6.11.tar.gz (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6), version: 0.6.11
2024-03-25T18:02:03,390   Skipping link: No binaries permitted for carrot-cdm: https://files.pythonhosted.org/packages/c6/02/47b9900cfd40b8d53a1f80397a8f2642d73bfe2b1e251efc5cb30235a6fd/carrot_cdm-0.6.11-py3-none-any.whl (from https://pypi.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,392 Fetching project page and analyzing links: https://www.piwheels.org/simple/carrot-cdm/
2024-03-25T18:02:03,392 Getting page https://www.piwheels.org/simple/carrot-cdm/
2024-03-25T18:02:03,394 Found index url https://www.piwheels.org/simple/
2024-03-25T18:02:03,835 Fetched page https://www.piwheels.org/simple/carrot-cdm/ as text/html
2024-03-25T18:02:03,839   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.10-py3-none-any.whl#sha256=4d4cd844bbb849d354f4b414752e88031c7522dfb7ecf4b01204baf138881a19 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,840   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.9-py3-none-any.whl#sha256=96df110d4366842eaf7ddb1fbf77bee1e9b31ec591ed9e0574dbd14f30dd88d6 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,840   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.8-py3-none-any.whl#sha256=d4d791c61850b16d200cc4929b99b2a87c4ae75c58b07554281e8a7a3c28718b (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,841   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.7-py3-none-any.whl#sha256=7470effa789545cf1ed22dfe41bb784e79fc0899faa69a124bb904b21191a7a8 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,841   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.6.1-py3-none-any.whl#sha256=c30ac28c6611a765a71a49ca2eae6ea7d85f4436e190be2a9a3fe930f3172fb7 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,842   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.6-py3-none-any.whl#sha256=7b929bd8e4739196f58b7f29acf1bb9fc83b4df44358f2fb2475a82eea152147 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,842   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.5-py3-none-any.whl#sha256=b82bee6537f0c56b238713ef24fbdce1b2511391604261d38ab9a748f91746e7 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,843   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.4-py3-none-any.whl#sha256=b1c94312af88c21a3b1f965471a2b2bb76ab57d3d660217865c2dad5d1e4b99a (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,843   Skipping link: No binaries permitted for carrot-cdm: https://www.piwheels.org/simple/carrot-cdm/carrot_cdm-0.6.3-py3-none-any.whl#sha256=39239603bf82d193df75e74636f7c3c0f438ae9c1444c6d8435b5b4884a9d247 (from https://www.piwheels.org/simple/carrot-cdm/) (requires-python:>=3.6)
2024-03-25T18:02:03,844 Skipping link: not a file: https://www.piwheels.org/simple/carrot-cdm/
2024-03-25T18:02:03,845 Skipping link: not a file: https://pypi.org/simple/carrot-cdm/
2024-03-25T18:02:03,864 Given no hashes to check 1 links for project 'carrot-cdm': discarding no candidates
2024-03-25T18:02:03,883 Collecting carrot-cdm==0.6.11
2024-03-25T18:02:03,885   Created temporary directory: /tmp/pip-unpack-vvpc9908
2024-03-25T18:02:04,103   Downloading carrot-cdm-0.6.11.tar.gz (73 kB)
2024-03-25T18:02:04,289   Added carrot-cdm==0.6.11 from https://files.pythonhosted.org/packages/ad/ae/08d01034f4286737b89cf43085c508ccf6710c899fdc30e40a3655522aaf/carrot-cdm-0.6.11.tar.gz to build tracker '/tmp/pip-build-tracker-isn143lg'
2024-03-25T18:02:04,291   Running setup.py (path:/tmp/pip-wheel-gqu5up4_/carrot-cdm_eb7381a8e7f540f798cfdf7bffa29724/setup.py) egg_info for package carrot-cdm
2024-03-25T18:02:04,292   Created temporary directory: /tmp/pip-pip-egg-info-1zvmsk2z
2024-03-25T18:02:04,293   Preparing metadata (setup.py): started
2024-03-25T18:02:04,294   Running command python setup.py egg_info
2024-03-25T18:02:04,756   LICENSE
2024-03-25T18:02:04,756   PKG-INFO
2024-03-25T18:02:04,757   README.md
2024-03-25T18:02:04,757   carrot
2024-03-25T18:02:04,758   carrot_cdm.egg-info
2024-03-25T18:02:04,758   setup.cfg
2024-03-25T18:02:04,759   setup.py
2024-03-25T18:02:05,423   All documentation relating to the CaRROT-CDM builder can be found here:

2024-03-25T18:02:05,424   ## [https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/](https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/)

2024-03-25T18:02:05,425   running egg_info
2024-03-25T18:02:05,425   creating /tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info
2024-03-25T18:02:05,450   writing /tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/PKG-INFO
2024-03-25T18:02:05,454   writing dependency_links to /tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/dependency_links.txt
2024-03-25T18:02:05,455   writing entry points to /tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/entry_points.txt
2024-03-25T18:02:05,457   writing requirements to /tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/requires.txt
2024-03-25T18:02:05,458   writing top-level names to /tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/top_level.txt
2024-03-25T18:02:05,460   writing manifest file '/tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/SOURCES.txt'
2024-03-25T18:02:05,552   reading manifest file '/tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/SOURCES.txt'
2024-03-25T18:02:05,554   adding license file 'LICENSE'
2024-03-25T18:02:05,557   writing manifest file '/tmp/pip-pip-egg-info-1zvmsk2z/carrot_cdm.egg-info/SOURCES.txt'
2024-03-25T18:02:05,665   Preparing metadata (setup.py): finished with status 'done'
2024-03-25T18:02:05,669   Source in /tmp/pip-wheel-gqu5up4_/carrot-cdm_eb7381a8e7f540f798cfdf7bffa29724 has version 0.6.11, which satisfies requirement carrot-cdm==0.6.11 from https://files.pythonhosted.org/packages/ad/ae/08d01034f4286737b89cf43085c508ccf6710c899fdc30e40a3655522aaf/carrot-cdm-0.6.11.tar.gz
2024-03-25T18:02:05,670   Removed carrot-cdm==0.6.11 from https://files.pythonhosted.org/packages/ad/ae/08d01034f4286737b89cf43085c508ccf6710c899fdc30e40a3655522aaf/carrot-cdm-0.6.11.tar.gz from build tracker '/tmp/pip-build-tracker-isn143lg'
2024-03-25T18:02:05,675 Created temporary directory: /tmp/pip-unpack-ylfrguab
2024-03-25T18:02:05,676 Created temporary directory: /tmp/pip-unpack-5thuhitd
2024-03-25T18:02:05,702 Building wheels for collected packages: carrot-cdm
2024-03-25T18:02:05,706   Created temporary directory: /tmp/pip-wheel-9jv7dyb4
2024-03-25T18:02:05,707   Building wheel for carrot-cdm (setup.py): started
2024-03-25T18:02:05,708   Destination directory: /tmp/pip-wheel-9jv7dyb4
2024-03-25T18:02:05,709   Running command python setup.py bdist_wheel
2024-03-25T18:02:06,112   All documentation relating to the CaRROT-CDM builder can be found here:

2024-03-25T18:02:06,113   ## [https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/](https://hdruk.github.io/CaRROT-Docs/CaRROT-CDM/About/)

2024-03-25T18:02:06,121   LICENSE
2024-03-25T18:02:06,121   PKG-INFO
2024-03-25T18:02:06,122   README.md
2024-03-25T18:02:06,123   carrot
2024-03-25T18:02:06,123   carrot_cdm.egg-info
2024-03-25T18:02:06,124   setup.cfg
2024-03-25T18:02:06,124   setup.py
2024-03-25T18:02:06,782   running bdist_wheel
2024-03-25T18:02:06,877   running build
2024-03-25T18:02:06,878   running build_py
2024-03-25T18:02:06,905   creating build
2024-03-25T18:02:06,905   creating build/lib
2024-03-25T18:02:06,906   creating build/lib/carrot
2024-03-25T18:02:06,908   copying carrot/_version.py -> build/lib/carrot
2024-03-25T18:02:06,910   copying carrot/__init__.py -> build/lib/carrot
2024-03-25T18:02:06,912   creating build/lib/carrot/analyses
2024-03-25T18:02:06,912   copying carrot/analyses/example_serology.py -> build/lib/carrot/analyses
2024-03-25T18:02:06,914   copying carrot/analyses/__init__.py -> build/lib/carrot/analyses
2024-03-25T18:02:06,916   creating build/lib/carrot/cdm
2024-03-25T18:02:06,917   copying carrot/cdm/operations.py -> build/lib/carrot/cdm
2024-03-25T18:02:06,919   copying carrot/cdm/model.py -> build/lib/carrot/cdm
2024-03-25T18:02:06,922   copying carrot/cdm/decorators.py -> build/lib/carrot/cdm
2024-03-25T18:02:06,923   copying carrot/cdm/__init__.py -> build/lib/carrot/cdm
2024-03-25T18:02:06,925   creating build/lib/carrot/tools
2024-03-25T18:02:06,926   copying carrot/tools/profiling.py -> build/lib/carrot/tools
2024-03-25T18:02:06,928   copying carrot/tools/logger.py -> build/lib/carrot/tools
2024-03-25T18:02:06,930   copying carrot/tools/bash_helpers.py -> build/lib/carrot/tools
2024-03-25T18:02:06,932   copying carrot/tools/file_helpers.py -> build/lib/carrot/tools
2024-03-25T18:02:06,934   copying carrot/tools/dag.py -> build/lib/carrot/tools
2024-03-25T18:02:06,936   copying carrot/tools/metrics.py -> build/lib/carrot/tools
2024-03-25T18:02:06,938   copying carrot/tools/mappingrules.py -> build/lib/carrot/tools
2024-03-25T18:02:06,940   copying carrot/tools/omopcdm.py -> build/lib/carrot/tools
2024-03-25T18:02:06,942   copying carrot/tools/__init__.py -> build/lib/carrot/tools
2024-03-25T18:02:06,944   copying carrot/tools/bclink_helpers.py -> build/lib/carrot/tools
2024-03-25T18:02:06,946   copying carrot/tools/rules_helpers.py -> build/lib/carrot/tools
2024-03-25T18:02:06,949   creating build/lib/carrot/io
2024-03-25T18:02:06,949   copying carrot/io/common.py -> build/lib/carrot/io
2024-03-25T18:02:06,952   copying carrot/io/__init__.py -> build/lib/carrot/io
2024-03-25T18:02:06,954   creating build/lib/carrot/cli
2024-03-25T18:02:06,955   copying carrot/cli/cli.py -> build/lib/carrot/cli
2024-03-25T18:02:06,956   copying carrot/cli/__init__.py -> build/lib/carrot/cli
2024-03-25T18:02:06,958   creating build/lib/carrot/cdm/classes
2024-03-25T18:02:06,959   copying carrot/cdm/classes/__init__.py -> build/lib/carrot/cdm/classes
2024-03-25T18:02:06,961   creating build/lib/carrot/cdm/objects
2024-03-25T18:02:06,962   copying carrot/cdm/objects/common.py -> build/lib/carrot/cdm/objects
2024-03-25T18:02:06,965   copying carrot/cdm/objects/__init__.py -> build/lib/carrot/cdm/objects
2024-03-25T18:02:06,967   creating build/lib/carrot/cdm/objects/versions
2024-03-25T18:02:06,968   copying carrot/cdm/objects/versions/__init__.py -> build/lib/carrot/cdm/objects/versions
2024-03-25T18:02:06,970   creating build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,971   copying carrot/cdm/objects/versions/v5_3_1/observation.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,973   copying carrot/cdm/objects/versions/v5_3_1/procedure_occurrence.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,975   copying carrot/cdm/objects/versions/v5_3_1/visit_occurrence.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,976   copying carrot/cdm/objects/versions/v5_3_1/drug_exposure.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,978   copying carrot/cdm/objects/versions/v5_3_1/measurement.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,980   copying carrot/cdm/objects/versions/v5_3_1/specimen.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,982   copying carrot/cdm/objects/versions/v5_3_1/person.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,983   copying carrot/cdm/objects/versions/v5_3_1/__init__.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,985   copying carrot/cdm/objects/versions/v5_3_1/condition_occurrence.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,987   copying carrot/cdm/objects/versions/v5_3_1/death.py -> build/lib/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:06,989   creating build/lib/carrot/tools/extract
2024-03-25T18:02:06,990   copying carrot/tools/extract/templates.py -> build/lib/carrot/tools/extract
2024-03-25T18:02:06,992   copying carrot/tools/extract/__init__.py -> build/lib/carrot/tools/extract
2024-03-25T18:02:06,994   creating build/lib/carrot/io/plugins
2024-03-25T18:02:06,995   copying carrot/io/plugins/bclink.py -> build/lib/carrot/io/plugins
2024-03-25T18:02:06,996   copying carrot/io/plugins/sql.py -> build/lib/carrot/io/plugins
2024-03-25T18:02:06,998   copying carrot/io/plugins/local.py -> build/lib/carrot/io/plugins
2024-03-25T18:02:07,000   copying carrot/io/plugins/__init__.py -> build/lib/carrot/io/plugins
2024-03-25T18:02:07,002   creating build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,003   copying carrot/cli/subcommands/pseudonymise.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,005   copying carrot/cli/subcommands/run.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,008   copying carrot/cli/subcommands/airflow.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,009   copying carrot/cli/subcommands/generate.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,012   copying carrot/cli/subcommands/etl.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,014   copying carrot/cli/subcommands/search.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,016   copying carrot/cli/subcommands/display.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,018   copying carrot/cli/subcommands/get.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,020   copying carrot/cli/subcommands/info.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,022   copying carrot/cli/subcommands/__init__.py -> build/lib/carrot/cli/subcommands
2024-03-25T18:02:07,023   running egg_info
2024-03-25T18:02:07,079   writing carrot_cdm.egg-info/PKG-INFO
2024-03-25T18:02:07,083   writing dependency_links to carrot_cdm.egg-info/dependency_links.txt
2024-03-25T18:02:07,085   writing entry points to carrot_cdm.egg-info/entry_points.txt
2024-03-25T18:02:07,087   writing requirements to carrot_cdm.egg-info/requires.txt
2024-03-25T18:02:07,088   writing top-level names to carrot_cdm.egg-info/top_level.txt
2024-03-25T18:02:07,125   reading manifest file 'carrot_cdm.egg-info/SOURCES.txt'
2024-03-25T18:02:07,128   adding license file 'LICENSE'
2024-03-25T18:02:07,132   writing manifest file 'carrot_cdm.egg-info/SOURCES.txt'
2024-03-25T18:02:07,168   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-03-25T18:02:07,169   !!

2024-03-25T18:02:07,170           ********************************************************************************
2024-03-25T18:02:07,170           Please avoid running ``setup.py`` directly.
2024-03-25T18:02:07,171           Instead, use pypa/build, pypa/installer or other
2024-03-25T18:02:07,171           standards-based tools.

2024-03-25T18:02:07,172           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-03-25T18:02:07,173           ********************************************************************************

2024-03-25T18:02:07,174   !!
2024-03-25T18:02:07,175     self.initialize_options()
2024-03-25T18:02:07,193   installing to build/bdist.linux-armv7l/wheel
2024-03-25T18:02:07,194   running install
2024-03-25T18:02:07,218   running install_lib
2024-03-25T18:02:07,243   creating build/bdist.linux-armv7l
2024-03-25T18:02:07,243   creating build/bdist.linux-armv7l/wheel
2024-03-25T18:02:07,245   creating build/bdist.linux-armv7l/wheel/carrot
2024-03-25T18:02:07,246   creating build/bdist.linux-armv7l/wheel/carrot/analyses
2024-03-25T18:02:07,247   copying build/lib/carrot/analyses/example_serology.py -> build/bdist.linux-armv7l/wheel/carrot/analyses
2024-03-25T18:02:07,249   copying build/lib/carrot/analyses/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/analyses
2024-03-25T18:02:07,252   creating build/bdist.linux-armv7l/wheel/carrot/cdm
2024-03-25T18:02:07,253   copying build/lib/carrot/cdm/operations.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2024-03-25T18:02:07,254   copying build/lib/carrot/cdm/model.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2024-03-25T18:02:07,257   copying build/lib/carrot/cdm/decorators.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2024-03-25T18:02:07,259   copying build/lib/carrot/cdm/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm
2024-03-25T18:02:07,261   creating build/bdist.linux-armv7l/wheel/carrot/cdm/classes
2024-03-25T18:02:07,262   copying build/lib/carrot/cdm/classes/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/classes
2024-03-25T18:02:07,264   creating build/bdist.linux-armv7l/wheel/carrot/cdm/objects
2024-03-25T18:02:07,264   copying build/lib/carrot/cdm/objects/common.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects
2024-03-25T18:02:07,267   copying build/lib/carrot/cdm/objects/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects
2024-03-25T18:02:07,269   creating build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions
2024-03-25T18:02:07,270   copying build/lib/carrot/cdm/objects/versions/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions
2024-03-25T18:02:07,272   creating build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,273   copying build/lib/carrot/cdm/objects/versions/v5_3_1/observation.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,275   copying build/lib/carrot/cdm/objects/versions/v5_3_1/procedure_occurrence.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,277   copying build/lib/carrot/cdm/objects/versions/v5_3_1/visit_occurrence.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,279   copying build/lib/carrot/cdm/objects/versions/v5_3_1/drug_exposure.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,281   copying build/lib/carrot/cdm/objects/versions/v5_3_1/measurement.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,282   copying build/lib/carrot/cdm/objects/versions/v5_3_1/specimen.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,284   copying build/lib/carrot/cdm/objects/versions/v5_3_1/person.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,286   copying build/lib/carrot/cdm/objects/versions/v5_3_1/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,288   copying build/lib/carrot/cdm/objects/versions/v5_3_1/condition_occurrence.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,290   copying build/lib/carrot/cdm/objects/versions/v5_3_1/death.py -> build/bdist.linux-armv7l/wheel/carrot/cdm/objects/versions/v5_3_1
2024-03-25T18:02:07,291   copying build/lib/carrot/_version.py -> build/bdist.linux-armv7l/wheel/carrot
2024-03-25T18:02:07,293   copying build/lib/carrot/__init__.py -> build/bdist.linux-armv7l/wheel/carrot
2024-03-25T18:02:07,295   creating build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,296   copying build/lib/carrot/tools/profiling.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,298   copying build/lib/carrot/tools/logger.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,300   copying build/lib/carrot/tools/bash_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,302   copying build/lib/carrot/tools/file_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,304   copying build/lib/carrot/tools/dag.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,306   copying build/lib/carrot/tools/metrics.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,309   copying build/lib/carrot/tools/mappingrules.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,311   copying build/lib/carrot/tools/omopcdm.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,313   creating build/bdist.linux-armv7l/wheel/carrot/tools/extract
2024-03-25T18:02:07,314   copying build/lib/carrot/tools/extract/templates.py -> build/bdist.linux-armv7l/wheel/carrot/tools/extract
2024-03-25T18:02:07,316   copying build/lib/carrot/tools/extract/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/tools/extract
2024-03-25T18:02:07,318   copying build/lib/carrot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,320   copying build/lib/carrot/tools/bclink_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,322   copying build/lib/carrot/tools/rules_helpers.py -> build/bdist.linux-armv7l/wheel/carrot/tools
2024-03-25T18:02:07,324   creating build/bdist.linux-armv7l/wheel/carrot/io
2024-03-25T18:02:07,325   creating build/bdist.linux-armv7l/wheel/carrot/io/plugins
2024-03-25T18:02:07,326   copying build/lib/carrot/io/plugins/bclink.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2024-03-25T18:02:07,328   copying build/lib/carrot/io/plugins/sql.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2024-03-25T18:02:07,330   copying build/lib/carrot/io/plugins/local.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2024-03-25T18:02:07,332   copying build/lib/carrot/io/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/io/plugins
2024-03-25T18:02:07,333   copying build/lib/carrot/io/common.py -> build/bdist.linux-armv7l/wheel/carrot/io
2024-03-25T18:02:07,335   copying build/lib/carrot/io/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/io
2024-03-25T18:02:07,337   creating build/bdist.linux-armv7l/wheel/carrot/cli
2024-03-25T18:02:07,339   creating build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,340   copying build/lib/carrot/cli/subcommands/pseudonymise.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,342   copying build/lib/carrot/cli/subcommands/run.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,345   copying build/lib/carrot/cli/subcommands/airflow.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,347   copying build/lib/carrot/cli/subcommands/generate.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,350   copying build/lib/carrot/cli/subcommands/etl.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,353   copying build/lib/carrot/cli/subcommands/search.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,355   copying build/lib/carrot/cli/subcommands/display.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,358   copying build/lib/carrot/cli/subcommands/get.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,361   copying build/lib/carrot/cli/subcommands/info.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,363   copying build/lib/carrot/cli/subcommands/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cli/subcommands
2024-03-25T18:02:07,364   copying build/lib/carrot/cli/cli.py -> build/bdist.linux-armv7l/wheel/carrot/cli
2024-03-25T18:02:07,366   copying build/lib/carrot/cli/__init__.py -> build/bdist.linux-armv7l/wheel/carrot/cli
2024-03-25T18:02:07,367   running install_egg_info
2024-03-25T18:02:07,399   Copying carrot_cdm.egg-info to build/bdist.linux-armv7l/wheel/carrot_cdm-0.6.11-py3.11.egg-info
2024-03-25T18:02:07,410   running install_scripts
2024-03-25T18:02:07,429   creating build/bdist.linux-armv7l/wheel/carrot_cdm-0.6.11.dist-info/WHEEL
2024-03-25T18:02:07,431   creating '/tmp/pip-wheel-9jv7dyb4/carrot_cdm-0.6.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-25T18:02:07,433   adding 'carrot/__init__.py'
2024-03-25T18:02:07,434   adding 'carrot/_version.py'
2024-03-25T18:02:07,436   adding 'carrot/analyses/__init__.py'
2024-03-25T18:02:07,437   adding 'carrot/analyses/example_serology.py'
2024-03-25T18:02:07,439   adding 'carrot/cdm/__init__.py'
2024-03-25T18:02:07,440   adding 'carrot/cdm/decorators.py'
2024-03-25T18:02:07,444   adding 'carrot/cdm/model.py'
2024-03-25T18:02:07,446   adding 'carrot/cdm/operations.py'
2024-03-25T18:02:07,447   adding 'carrot/cdm/classes/__init__.py'
2024-03-25T18:02:07,449   adding 'carrot/cdm/objects/__init__.py'
2024-03-25T18:02:07,452   adding 'carrot/cdm/objects/common.py'
2024-03-25T18:02:07,453   adding 'carrot/cdm/objects/versions/__init__.py'
2024-03-25T18:02:07,455   adding 'carrot/cdm/objects/versions/v5_3_1/__init__.py'
2024-03-25T18:02:07,456   adding 'carrot/cdm/objects/versions/v5_3_1/condition_occurrence.py'
2024-03-25T18:02:07,458   adding 'carrot/cdm/objects/versions/v5_3_1/death.py'
2024-03-25T18:02:07,459   adding 'carrot/cdm/objects/versions/v5_3_1/drug_exposure.py'
2024-03-25T18:02:07,460   adding 'carrot/cdm/objects/versions/v5_3_1/measurement.py'
2024-03-25T18:02:07,462   adding 'carrot/cdm/objects/versions/v5_3_1/observation.py'
2024-03-25T18:02:07,463   adding 'carrot/cdm/objects/versions/v5_3_1/person.py'
2024-03-25T18:02:07,464   adding 'carrot/cdm/objects/versions/v5_3_1/procedure_occurrence.py'
2024-03-25T18:02:07,466   adding 'carrot/cdm/objects/versions/v5_3_1/specimen.py'
2024-03-25T18:02:07,467   adding 'carrot/cdm/objects/versions/v5_3_1/visit_occurrence.py'
2024-03-25T18:02:07,468   adding 'carrot/cli/__init__.py'
2024-03-25T18:02:07,470   adding 'carrot/cli/cli.py'
2024-03-25T18:02:07,471   adding 'carrot/cli/subcommands/__init__.py'
2024-03-25T18:02:07,473   adding 'carrot/cli/subcommands/airflow.py'
2024-03-25T18:02:07,474   adding 'carrot/cli/subcommands/display.py'
2024-03-25T18:02:07,479   adding 'carrot/cli/subcommands/etl.py'
2024-03-25T18:02:07,482   adding 'carrot/cli/subcommands/generate.py'
2024-03-25T18:02:07,484   adding 'carrot/cli/subcommands/get.py'
2024-03-25T18:02:07,485   adding 'carrot/cli/subcommands/info.py'
2024-03-25T18:02:07,486   adding 'carrot/cli/subcommands/pseudonymise.py'
2024-03-25T18:02:07,496   adding 'carrot/cli/subcommands/run.py'
2024-03-25T18:02:07,499   adding 'carrot/cli/subcommands/search.py'
2024-03-25T18:02:07,719   adding 'carrot/io/__init__.py'
2024-03-25T18:02:07,720   adding 'carrot/io/common.py'
2024-03-25T18:02:07,722   adding 'carrot/io/plugins/__init__.py'
2024-03-25T18:02:07,723   adding 'carrot/io/plugins/bclink.py'
2024-03-25T18:02:07,725   adding 'carrot/io/plugins/local.py'
2024-03-25T18:02:07,726   adding 'carrot/io/plugins/sql.py'
2024-03-25T18:02:07,728   adding 'carrot/tools/__init__.py'
2024-03-25T18:02:07,730   adding 'carrot/tools/bash_helpers.py'
2024-03-25T18:02:07,732   adding 'carrot/tools/bclink_helpers.py'
2024-03-25T18:02:07,734   adding 'carrot/tools/dag.py'
2024-03-25T18:02:07,736   adding 'carrot/tools/file_helpers.py'
2024-03-25T18:02:07,737   adding 'carrot/tools/logger.py'
2024-03-25T18:02:07,739   adding 'carrot/tools/mappingrules.py'
2024-03-25T18:02:07,740   adding 'carrot/tools/metrics.py'
2024-03-25T18:02:07,742   adding 'carrot/tools/omopcdm.py'
2024-03-25T18:02:07,743   adding 'carrot/tools/profiling.py'
2024-03-25T18:02:07,745   adding 'carrot/tools/rules_helpers.py'
2024-03-25T18:02:07,747   adding 'carrot/tools/extract/__init__.py'
2024-03-25T18:02:07,748   adding 'carrot/tools/extract/templates.py'
2024-03-25T18:02:07,750   adding 'carrot_cdm-0.6.11.dist-info/LICENSE'
2024-03-25T18:02:07,751   adding 'carrot_cdm-0.6.11.dist-info/METADATA'
2024-03-25T18:02:07,752   adding 'carrot_cdm-0.6.11.dist-info/WHEEL'
2024-03-25T18:02:07,753   adding 'carrot_cdm-0.6.11.dist-info/entry_points.txt'
2024-03-25T18:02:07,754   adding 'carrot_cdm-0.6.11.dist-info/top_level.txt'
2024-03-25T18:02:07,755   adding 'carrot_cdm-0.6.11.dist-info/RECORD'
2024-03-25T18:02:07,759   removing build/bdist.linux-armv7l/wheel
2024-03-25T18:02:07,887   Building wheel for carrot-cdm (setup.py): finished with status 'done'
2024-03-25T18:02:07,890   Created wheel for carrot-cdm: filename=carrot_cdm-0.6.11-py3-none-any.whl size=91834 sha256=3c68172167458f402313b5b931444d5553ce7f32b5c4c8f65af527eafa03a92d
2024-03-25T18:02:07,892   Stored in directory: /tmp/pip-ephem-wheel-cache-i55mvj2e/wheels/05/db/8c/740686dc27381d9793f297688209a8b7a407f14d7f040fd2af
2024-03-25T18:02:07,903 Successfully built carrot-cdm
2024-03-25T18:02:07,909 Removed build tracker: '/tmp/pip-build-tracker-isn143lg'