2024-03-25T22:27:47,671 Created temporary directory: /tmp/pip-build-tracker-gc14cxfg 2024-03-25T22:27:47,672 Initialized build tracking at /tmp/pip-build-tracker-gc14cxfg 2024-03-25T22:27:47,673 Created build tracker: /tmp/pip-build-tracker-gc14cxfg 2024-03-25T22:27:47,673 Entered build tracker: /tmp/pip-build-tracker-gc14cxfg 2024-03-25T22:27:47,674 Created temporary directory: /tmp/pip-wheel-texibgwi 2024-03-25T22:27:47,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-bp9ahgwm 2024-03-25T22:27:47,701 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-25T22:27:47,705 2 location(s) to search for versions of nmdc-runtime: 2024-03-25T22:27:47,705 * https://pypi.org/simple/nmdc-runtime/ 2024-03-25T22:27:47,705 * https://www.piwheels.org/simple/nmdc-runtime/ 2024-03-25T22:27:47,706 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2024-03-25T22:27:47,707 Getting page https://pypi.org/simple/nmdc-runtime/ 2024-03-25T22:27:47,708 Found index url https://pypi.org/simple/ 2024-03-25T22:27:47,927 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2024-03-25T22:27:47,936 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:47,937 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2024-03-25T22:27:47,938 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:47,939 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2024-03-25T22:27:47,939 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:47,940 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2024-03-25T22:27:47,941 Skipping link: No binaries permitted for nmdc-runtime: 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https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2024-03-25T22:27:47,957 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7c/80/a8c1f0d64d6a38faa36be239477f893488fa2e80bbd9d3699996544fd35a/nmdc_runtime-1.0.13-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:47,958 Found link https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.13 2024-03-25T22:27:47,959 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/17/8d/0c38aaa9d5581eda908809321eb9218b90b859c2087483513edfe30e0ae9/nmdc_runtime-1.0.14-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:47,959 Found link https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.14 2024-03-25T22:27:47,960 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/24/60/40b5389c4d34db0aefc25a4f407a1965d297a51ce443ffcc54fcf5f0a30f/nmdc_runtime-1.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:47,961 Found link https://files.pythonhosted.org/packages/f1/af/d3edeb153597d1918967ef00cf6be6621c21043ba1549fa0f37273a01a7d/nmdc_runtime-1.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.1.0 2024-03-25T22:27:47,962 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/2d/7b/c1998db0a46f571bbc7e208e7b3a55afb254a6d1413a5fbd500368128aa9/nmdc_runtime-1.2.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:47,962 Found link https://files.pythonhosted.org/packages/67/bc/bd9a296ea7257aaa0c72a1f9be3a197f6e2d71c337574e3d16198cd6242e/nmdc_runtime-1.2.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.2.0 2024-03-25T22:27:47,963 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/b9/49/7b595d1c88a2b6de2769a572b80f625239a3ac06eef26ca283051c875498/nmdc_runtime-1.3.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:47,964 Found link https://files.pythonhosted.org/packages/fc/5b/4468b0402403aeecb9bf10b5381dd759e1b8ca11a5793c7c1f7e600f8068/nmdc_runtime-1.3.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), 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nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.2.0-py3-none-any.whl#sha256=21a501b7fa193fe956a1a992fdcd4388ae80f57fa6354e14e2855edde761c39d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,562 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.1.0-py3-none-any.whl#sha256=d53b1a410a95e2e14bfd7a88dd3ea3163a079acd47eb8f2b197e6aef02689ac3 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,562 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.14-py3-none-any.whl#sha256=7ea5bd4e9b9348aee578b0f6c64bdc35467a36da334a44d91c50fa1417405f13 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,563 Skipping link: No binaries permitted for nmdc-runtime: 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https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,565 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,566 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,566 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,567 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,567 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,568 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-03-25T22:27:48,568 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:48,569 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:48,569 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:48,570 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-03-25T22:27:48,571 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2024-03-25T22:27:48,572 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2024-03-25T22:27:48,593 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2024-03-25T22:27:48,611 Collecting nmdc-runtime==1.4.2 2024-03-25T22:27:48,613 Created temporary directory: /tmp/pip-unpack-fqoq7xfz 2024-03-25T22:27:49,087 Downloading nmdc_runtime-1.4.2.tar.gz (63.7 MB) 2024-03-25T22:28:04,254 Added nmdc-runtime==1.4.2 from https://files.pythonhosted.org/packages/56/3a/a1f9f57b1f9141b0ed2d994f6cf80f087448513e33b930ed1b26ee348e5a/nmdc_runtime-1.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-gc14cxfg' 2024-03-25T22:28:04,256 Running setup.py (path:/tmp/pip-wheel-texibgwi/nmdc-runtime_ddd4edda7ea94057b8a2c0e3c2744afe/setup.py) egg_info for package nmdc-runtime 2024-03-25T22:28:04,257 Created temporary directory: /tmp/pip-pip-egg-info-2zliapd2 2024-03-25T22:28:04,257 Preparing metadata (setup.py): started 2024-03-25T22:28:04,258 Running command python setup.py egg_info 2024-03-25T22:28:04,981 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-03-25T22:28:04,982 !! 2024-03-25T22:28:04,983 ******************************************************************************** 2024-03-25T22:28:04,983 Requirements should be satisfied by a PEP 517 installer. 2024-03-25T22:28:04,984 If you are using pip, you can try `pip install --use-pep517`. 2024-03-25T22:28:04,984 ******************************************************************************** 2024-03-25T22:28:04,985 !! 2024-03-25T22:28:04,986 dist.fetch_build_eggs(dist.setup_requires) 2024-03-25T22:28:08,091 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-03-25T22:28:08,192 running egg_info 2024-03-25T22:28:08,193 creating /tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info 2024-03-25T22:28:08,220 writing /tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/PKG-INFO 2024-03-25T22:28:08,223 writing dependency_links to /tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/dependency_links.txt 2024-03-25T22:28:08,225 writing entry points to /tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/entry_points.txt 2024-03-25T22:28:08,226 writing top-level names to /tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/top_level.txt 2024-03-25T22:28:08,228 writing manifest file '/tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/SOURCES.txt' 2024-03-25T22:28:08,419 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-03-25T22:28:08,425 reading manifest file '/tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/SOURCES.txt' 2024-03-25T22:28:08,426 adding license file 'LICENSE' 2024-03-25T22:28:08,430 writing manifest file '/tmp/pip-pip-egg-info-2zliapd2/nmdc_runtime.egg-info/SOURCES.txt' 2024-03-25T22:28:08,545 Preparing metadata (setup.py): finished with status 'done' 2024-03-25T22:28:08,549 Source in /tmp/pip-wheel-texibgwi/nmdc-runtime_ddd4edda7ea94057b8a2c0e3c2744afe has version 1.4.2, which satisfies requirement nmdc-runtime==1.4.2 from https://files.pythonhosted.org/packages/56/3a/a1f9f57b1f9141b0ed2d994f6cf80f087448513e33b930ed1b26ee348e5a/nmdc_runtime-1.4.2.tar.gz 2024-03-25T22:28:08,550 Removed nmdc-runtime==1.4.2 from https://files.pythonhosted.org/packages/56/3a/a1f9f57b1f9141b0ed2d994f6cf80f087448513e33b930ed1b26ee348e5a/nmdc_runtime-1.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-gc14cxfg' 2024-03-25T22:28:08,556 Created temporary directory: /tmp/pip-unpack-t0ivspxk 2024-03-25T22:28:08,557 Created temporary directory: /tmp/pip-unpack-s3f9i3dx 2024-03-25T22:28:08,560 Building wheels for collected packages: nmdc-runtime 2024-03-25T22:28:08,564 Created temporary directory: /tmp/pip-wheel-e4ue24xv 2024-03-25T22:28:08,565 Building wheel for nmdc-runtime (setup.py): started 2024-03-25T22:28:08,566 Destination directory: /tmp/pip-wheel-e4ue24xv 2024-03-25T22:28:08,567 Running command python setup.py bdist_wheel 2024-03-25T22:28:09,249 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-03-25T22:28:09,249 !! 2024-03-25T22:28:09,250 ******************************************************************************** 2024-03-25T22:28:09,251 Requirements should be satisfied by a PEP 517 installer. 2024-03-25T22:28:09,251 If you are using pip, you can try `pip install --use-pep517`. 2024-03-25T22:28:09,251 ******************************************************************************** 2024-03-25T22:28:09,252 !! 2024-03-25T22:28:09,253 dist.fetch_build_eggs(dist.setup_requires) 2024-03-25T22:28:09,805 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-03-25T22:28:09,898 running bdist_wheel 2024-03-25T22:28:10,004 running build 2024-03-25T22:28:10,004 running build_py 2024-03-25T22:28:10,034 creating build 2024-03-25T22:28:10,035 creating build/lib 2024-03-25T22:28:10,035 creating build/lib/nmdc_runtime 2024-03-25T22:28:10,036 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2024-03-25T22:28:10,039 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2024-03-25T22:28:10,040 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2024-03-25T22:28:10,042 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2024-03-25T22:28:10,044 creating build/lib/nmdc_runtime/site 2024-03-25T22:28:10,045 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2024-03-25T22:28:10,047 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2024-03-25T22:28:10,050 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2024-03-25T22:28:10,052 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2024-03-25T22:28:10,054 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2024-03-25T22:28:10,055 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2024-03-25T22:28:10,058 creating build/lib/nmdc_runtime/minter 2024-03-25T22:28:10,059 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2024-03-25T22:28:10,061 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2024-03-25T22:28:10,062 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2024-03-25T22:28:10,064 creating build/lib/nmdc_runtime/client 2024-03-25T22:28:10,065 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2024-03-25T22:28:10,067 creating build/lib/nmdc_runtime/core 2024-03-25T22:28:10,068 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2024-03-25T22:28:10,070 creating build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,071 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,074 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,076 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,079 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,081 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,083 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-03-25T22:28:10,085 creating build/lib/nmdc_runtime/domain 2024-03-25T22:28:10,086 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2024-03-25T22:28:10,089 creating build/lib/nmdc_runtime/infrastructure 2024-03-25T22:28:10,090 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2024-03-25T22:28:10,092 creating build/lib/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,093 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,095 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,097 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,099 creating build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,100 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,102 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,105 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,107 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,109 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,112 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,114 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,116 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,118 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,121 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,123 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2024-03-25T22:28:10,127 creating build/lib/nmdc_runtime/site/validation 2024-03-25T22:28:10,128 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2024-03-25T22:28:10,130 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2024-03-25T22:28:10,132 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2024-03-25T22:28:10,134 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2024-03-25T22:28:10,136 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2024-03-25T22:28:10,138 creating build/lib/nmdc_runtime/site/export 2024-03-25T22:28:10,139 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2024-03-25T22:28:10,141 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2024-03-25T22:28:10,144 creating build/lib/nmdc_runtime/site/normalization 2024-03-25T22:28:10,145 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2024-03-25T22:28:10,147 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2024-03-25T22:28:10,149 creating build/lib/nmdc_runtime/site/backup 2024-03-25T22:28:10,151 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2024-03-25T22:28:10,153 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2024-03-25T22:28:10,155 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2024-03-25T22:28:10,157 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2024-03-25T22:28:10,159 creating build/lib/nmdc_runtime/site/changesheets 2024-03-25T22:28:10,161 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2024-03-25T22:28:10,163 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2024-03-25T22:28:10,165 creating build/lib/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,166 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,169 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,173 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,174 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,177 creating build/lib/nmdc_runtime/minter/entrypoints 2024-03-25T22:28:10,178 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2024-03-25T22:28:10,180 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2024-03-25T22:28:10,182 creating build/lib/nmdc_runtime/minter/adapters 2024-03-25T22:28:10,183 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2024-03-25T22:28:10,185 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2024-03-25T22:28:10,187 creating build/lib/nmdc_runtime/minter/domain 2024-03-25T22:28:10,188 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2024-03-25T22:28:10,190 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2024-03-25T22:28:10,192 creating build/lib/nmdc_runtime/core/db 2024-03-25T22:28:10,193 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2024-03-25T22:28:10,195 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2024-03-25T22:28:10,197 creating build/lib/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,198 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,200 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,202 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,205 creating build/lib/nmdc_runtime/domain/users 2024-03-25T22:28:10,206 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2024-03-25T22:28:10,208 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2024-03-25T22:28:10,209 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2024-03-25T22:28:10,211 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2024-03-25T22:28:10,213 creating build/lib/nmdc_runtime/infrastructure/database 2024-03-25T22:28:10,215 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2024-03-25T22:28:10,217 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2024-03-25T22:28:10,219 creating build/lib/nmdc_runtime/infrastructure/database/models 2024-03-25T22:28:10,220 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2024-03-25T22:28:10,222 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2024-03-25T22:28:10,269 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-03-25T22:28:10,269 !! 2024-03-25T22:28:10,270 ******************************************************************************** 2024-03-25T22:28:10,271 Please avoid running ``setup.py`` directly. 2024-03-25T22:28:10,271 Instead, use pypa/build, pypa/installer or other 2024-03-25T22:28:10,272 standards-based tools. 2024-03-25T22:28:10,273 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-03-25T22:28:10,274 ******************************************************************************** 2024-03-25T22:28:10,275 !! 2024-03-25T22:28:10,276 self.initialize_options() 2024-03-25T22:28:10,299 installing to build/bdist.linux-armv7l/wheel 2024-03-25T22:28:10,299 running install 2024-03-25T22:28:10,324 running install_lib 2024-03-25T22:28:10,354 creating build/bdist.linux-armv7l 2024-03-25T22:28:10,354 creating build/bdist.linux-armv7l/wheel 2024-03-25T22:28:10,356 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-03-25T22:28:10,358 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,359 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,363 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,364 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,366 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,368 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-03-25T22:28:10,370 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,373 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,375 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,377 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,379 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,396 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,398 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,400 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,403 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,406 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,408 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,410 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,412 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,414 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-03-25T22:28:10,418 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-03-25T22:28:10,419 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-03-25T22:28:10,421 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-03-25T22:28:10,423 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-03-25T22:28:10,425 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-03-25T22:28:10,427 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-03-25T22:28:10,430 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-03-25T22:28:10,431 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-03-25T22:28:10,433 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-03-25T22:28:10,435 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,438 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-03-25T22:28:10,440 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-03-25T22:28:10,442 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-03-25T22:28:10,443 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,446 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-03-25T22:28:10,447 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-03-25T22:28:10,449 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-03-25T22:28:10,451 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-03-25T22:28:10,453 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-03-25T22:28:10,455 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-03-25T22:28:10,459 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-03-25T22:28:10,460 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-03-25T22:28:10,462 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-03-25T22:28:10,464 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,465 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,468 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,473 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,475 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2024-03-25T22:28:10,478 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-03-25T22:28:10,479 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-03-25T22:28:10,481 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-03-25T22:28:10,483 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-03-25T22:28:10,485 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-03-25T22:28:10,487 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-03-25T22:28:10,488 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-03-25T22:28:10,491 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-03-25T22:28:10,493 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-03-25T22:28:10,496 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-03-25T22:28:10,498 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-03-25T22:28:10,499 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-03-25T22:28:10,502 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-03-25T22:28:10,504 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-03-25T22:28:10,507 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2024-03-25T22:28:10,508 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2024-03-25T22:28:10,510 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-03-25T22:28:10,512 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2024-03-25T22:28:10,513 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-03-25T22:28:10,515 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-03-25T22:28:10,517 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-03-25T22:28:10,519 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,520 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,522 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,525 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-03-25T22:28:10,526 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2024-03-25T22:28:10,529 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,530 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,533 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,535 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,538 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,542 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,544 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-03-25T22:28:10,546 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-03-25T22:28:10,548 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2024-03-25T22:28:10,550 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-03-25T22:28:10,551 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-03-25T22:28:10,554 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-03-25T22:28:10,555 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-03-25T22:28:10,558 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-03-25T22:28:10,559 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2024-03-25T22:28:10,562 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2024-03-25T22:28:10,563 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-03-25T22:28:10,565 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-03-25T22:28:10,567 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-03-25T22:28:10,568 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-03-25T22:28:10,570 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-03-25T22:28:10,572 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-03-25T22:28:10,574 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2024-03-25T22:28:10,576 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-03-25T22:28:10,577 running install_egg_info 2024-03-25T22:28:10,634 running egg_info 2024-03-25T22:28:10,660 writing nmdc_runtime.egg-info/PKG-INFO 2024-03-25T22:28:10,664 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2024-03-25T22:28:10,666 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2024-03-25T22:28:10,668 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2024-03-25T22:28:10,776 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-03-25T22:28:10,779 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2024-03-25T22:28:10,838 adding license file 'LICENSE' 2024-03-25T22:28:10,855 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2024-03-25T22:28:10,858 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.4.2-py3.11.egg-info 2024-03-25T22:28:10,868 running install_scripts 2024-03-25T22:28:10,882 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.4.2.dist-info/WHEEL 2024-03-25T22:28:10,885 creating '/tmp/pip-wheel-e4ue24xv/nmdc_runtime-1.4.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-25T22:28:10,888 adding 'nmdc_runtime/__init__.py' 2024-03-25T22:28:10,889 adding 'nmdc_runtime/containers.py' 2024-03-25T22:28:10,891 adding 'nmdc_runtime/main.py' 2024-03-25T22:28:10,894 adding 'nmdc_runtime/util.py' 2024-03-25T22:28:10,897 adding 'nmdc_runtime/client/__init__.py' 2024-03-25T22:28:10,899 adding 'nmdc_runtime/core/__init__.py' 2024-03-25T22:28:10,901 adding 'nmdc_runtime/core/db/Database.py' 2024-03-25T22:28:10,902 adding 'nmdc_runtime/core/db/__init__.py' 2024-03-25T22:28:10,905 adding 'nmdc_runtime/core/exceptions/__init__.py' 2024-03-25T22:28:10,906 adding 'nmdc_runtime/core/exceptions/base.py' 2024-03-25T22:28:10,908 adding 'nmdc_runtime/core/exceptions/token.py' 2024-03-25T22:28:10,910 adding 'nmdc_runtime/domain/__init__.py' 2024-03-25T22:28:10,912 adding 'nmdc_runtime/domain/users/__init__.py' 2024-03-25T22:28:10,913 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2024-03-25T22:28:10,915 adding 'nmdc_runtime/domain/users/userSchema.py' 2024-03-25T22:28:10,916 adding 'nmdc_runtime/domain/users/userService.py' 2024-03-25T22:28:10,918 adding 'nmdc_runtime/infrastructure/__init__.py' 2024-03-25T22:28:10,920 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2024-03-25T22:28:10,922 adding 'nmdc_runtime/infrastructure/database/db.py' 2024-03-25T22:28:10,924 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2024-03-25T22:28:10,925 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2024-03-25T22:28:10,927 adding 'nmdc_runtime/lib/__init__.py' 2024-03-25T22:28:10,929 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2024-03-25T22:28:10,931 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2024-03-25T22:28:10,934 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2024-03-25T22:28:10,937 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2024-03-25T22:28:10,943 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2024-03-25T22:28:10,945 adding 'nmdc_runtime/minter/__init__.py' 2024-03-25T22:28:10,947 adding 'nmdc_runtime/minter/bootstrap.py' 2024-03-25T22:28:10,948 adding 'nmdc_runtime/minter/config.py' 2024-03-25T22:28:10,950 adding 'nmdc_runtime/minter/adapters/__init__.py' 2024-03-25T22:28:10,952 adding 'nmdc_runtime/minter/adapters/repository.py' 2024-03-25T22:28:10,954 adding 'nmdc_runtime/minter/domain/__init__.py' 2024-03-25T22:28:10,956 adding 'nmdc_runtime/minter/domain/model.py' 2024-03-25T22:28:10,958 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2024-03-25T22:28:10,959 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2024-03-25T22:28:10,961 adding 'nmdc_runtime/site/__init__.py' 2024-03-25T22:28:10,963 adding 'nmdc_runtime/site/graphs.py' 2024-03-25T22:28:10,968 adding 'nmdc_runtime/site/ops.py' 2024-03-25T22:28:10,971 adding 'nmdc_runtime/site/repository.py' 2024-03-25T22:28:10,974 adding 'nmdc_runtime/site/resources.py' 2024-03-25T22:28:10,975 adding 'nmdc_runtime/site/util.py' 2024-03-25T22:28:10,977 adding 'nmdc_runtime/site/backup/__init__.py' 2024-03-25T22:28:10,979 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2024-03-25T22:28:10,981 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2024-03-25T22:28:10,982 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2024-03-25T22:28:10,984 adding 'nmdc_runtime/site/changesheets/__init__.py' 2024-03-25T22:28:10,986 adding 'nmdc_runtime/site/changesheets/base.py' 2024-03-25T22:28:10,987 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2024-03-25T22:28:10,989 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2024-03-25T22:28:10,991 adding 'nmdc_runtime/site/drsobjects/registration.py' 2024-03-25T22:28:10,993 adding 'nmdc_runtime/site/export/__init__.py' 2024-03-25T22:28:10,994 adding 'nmdc_runtime/site/export/study_metadata.py' 2024-03-25T22:28:10,996 adding 'nmdc_runtime/site/normalization/__init__.py' 2024-03-25T22:28:10,998 adding 'nmdc_runtime/site/normalization/gold.py' 2024-03-25T22:28:11,000 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2024-03-25T22:28:11,001 adding 'nmdc_runtime/site/terminusdb/generate.py' 2024-03-25T22:28:11,003 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2024-03-25T22:28:11,012 adding 'nmdc_runtime/site/terminusdb/schema.py' 2024-03-25T22:28:11,014 adding 'nmdc_runtime/site/translation/__init__.py' 2024-03-25T22:28:11,016 adding 'nmdc_runtime/site/translation/emsl.py' 2024-03-25T22:28:11,018 adding 'nmdc_runtime/site/translation/gold.py' 2024-03-25T22:28:11,021 adding 'nmdc_runtime/site/translation/gold_translator.py' 2024-03-25T22:28:11,023 adding 'nmdc_runtime/site/translation/jgi.py' 2024-03-25T22:28:11,026 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2024-03-25T22:28:11,030 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2024-03-25T22:28:11,032 adding 'nmdc_runtime/site/translation/neon_utils.py' 2024-03-25T22:28:11,035 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2024-03-25T22:28:11,037 adding 'nmdc_runtime/site/translation/translator.py' 2024-03-25T22:28:11,039 adding 'nmdc_runtime/site/translation/util.py' 2024-03-25T22:28:11,041 adding 'nmdc_runtime/site/validation/__init__.py' 2024-03-25T22:28:11,042 adding 'nmdc_runtime/site/validation/emsl.py' 2024-03-25T22:28:11,044 adding 'nmdc_runtime/site/validation/gold.py' 2024-03-25T22:28:11,045 adding 'nmdc_runtime/site/validation/jgi.py' 2024-03-25T22:28:11,047 adding 'nmdc_runtime/site/validation/util.py' 2024-03-25T22:28:11,049 adding 'nmdc_runtime-1.4.2.dist-info/LICENSE' 2024-03-25T22:28:11,051 adding 'nmdc_runtime-1.4.2.dist-info/METADATA' 2024-03-25T22:28:11,052 adding 'nmdc_runtime-1.4.2.dist-info/WHEEL' 2024-03-25T22:28:11,053 adding 'nmdc_runtime-1.4.2.dist-info/entry_points.txt' 2024-03-25T22:28:11,055 adding 'nmdc_runtime-1.4.2.dist-info/top_level.txt' 2024-03-25T22:28:11,056 adding 'nmdc_runtime-1.4.2.dist-info/RECORD' 2024-03-25T22:28:11,060 removing build/bdist.linux-armv7l/wheel 2024-03-25T22:28:11,200 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2024-03-25T22:28:11,203 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.4.2-py3-none-any.whl size=127811 sha256=1a519af1939692b35d8139c1d1c7b24a696479dc8d4cfe7d575e7ef6db175160 2024-03-25T22:28:11,204 Stored in directory: /tmp/pip-ephem-wheel-cache-bp9ahgwm/wheels/36/87/94/c794fdb24b707d1c0307f84f71b45eef58e555f4849610dfce 2024-03-25T22:28:11,217 Successfully built nmdc-runtime 2024-03-25T22:28:11,224 Removed build tracker: '/tmp/pip-build-tracker-gc14cxfg'