2024-03-26T03:50:44,889 Created temporary directory: /tmp/pip-build-tracker-cye7lx26 2024-03-26T03:50:44,891 Initialized build tracking at /tmp/pip-build-tracker-cye7lx26 2024-03-26T03:50:44,891 Created build tracker: /tmp/pip-build-tracker-cye7lx26 2024-03-26T03:50:44,891 Entered build tracker: /tmp/pip-build-tracker-cye7lx26 2024-03-26T03:50:44,892 Created temporary directory: /tmp/pip-wheel-ow3rscy2 2024-03-26T03:50:44,895 Created temporary directory: /tmp/pip-ephem-wheel-cache-mt_wrb8d 2024-03-26T03:50:44,917 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-26T03:50:44,921 2 location(s) to search for versions of scarcc: 2024-03-26T03:50:44,921 * https://pypi.org/simple/scarcc/ 2024-03-26T03:50:44,921 * https://www.piwheels.org/simple/scarcc/ 2024-03-26T03:50:44,921 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-26T03:50:44,922 Getting page https://pypi.org/simple/scarcc/ 2024-03-26T03:50:44,924 Found index url https://pypi.org/simple/ 2024-03-26T03:50:45,144 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-26T03:50:45,147 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-26T03:50:45,147 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-26T03:50:45,148 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-26T03:50:45,149 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,150 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-26T03:50:45,150 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,151 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-03-26T03:50:45,152 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,153 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-03-26T03:50:45,154 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/75/6b/711a0973554042f8eab900c92381eba54d1b5d869140a32887d25d8986e9/scarcc-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,155 Found link https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.1 2024-03-26T03:50:45,156 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-26T03:50:45,156 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-26T03:50:45,158 Found index url https://www.piwheels.org/simple/ 2024-03-26T03:50:45,329 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-26T03:50:45,331 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.0-py3-none-any.whl#sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,332 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,332 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T03:50:45,333 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-26T03:50:45,333 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-26T03:50:45,334 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-26T03:50:45,353 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-26T03:50:45,371 Collecting scarcc==0.1.1 2024-03-26T03:50:45,373 Created temporary directory: /tmp/pip-unpack-82wmvfsd 2024-03-26T03:50:45,598 Downloading scarcc-0.1.1.tar.gz (52 kB) 2024-03-26T03:50:45,772 Added scarcc==0.1.1 from https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-cye7lx26' 2024-03-26T03:50:45,777 Created temporary directory: /tmp/pip-build-env-zn9k67z6 2024-03-26T03:50:45,781 Installing build dependencies: started 2024-03-26T03:50:45,783 Running command pip subprocess to install build dependencies 2024-03-26T03:50:46,926 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-26T03:50:47,425 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-26T03:50:49,051 Collecting setuptools>=40.6.0 2024-03-26T03:50:49,066 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-26T03:50:49,286 Collecting wheel 2024-03-26T03:50:49,300 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-26T03:50:51,918 Installing collected packages: wheel, setuptools 2024-03-26T03:50:52,141 Creating /tmp/pip-build-env-zn9k67z6/overlay/local/bin 2024-03-26T03:50:52,144 changing mode of /tmp/pip-build-env-zn9k67z6/overlay/local/bin/wheel to 755 2024-03-26T03:50:54,389 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-26T03:50:54,883 Installing build dependencies: finished with status 'done' 2024-03-26T03:50:54,887 Getting requirements to build wheel: started 2024-03-26T03:50:54,888 Running command Getting requirements to build wheel 2024-03-26T03:50:55,433 running egg_info 2024-03-26T03:50:55,437 writing src/scarcc.egg-info/PKG-INFO 2024-03-26T03:50:55,440 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-26T03:50:55,443 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-26T03:50:55,445 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-26T03:50:55,477 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:55,482 adding license file 'LICENSE' 2024-03-26T03:50:55,486 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:55,562 Getting requirements to build wheel: finished with status 'done' 2024-03-26T03:50:55,571 Created temporary directory: /tmp/pip-modern-metadata-novfpl8m 2024-03-26T03:50:55,574 Preparing metadata (pyproject.toml): started 2024-03-26T03:50:55,576 Running command Preparing metadata (pyproject.toml) 2024-03-26T03:50:56,090 running dist_info 2024-03-26T03:50:56,094 creating /tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info 2024-03-26T03:50:56,098 writing /tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/PKG-INFO 2024-03-26T03:50:56,102 writing dependency_links to /tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/dependency_links.txt 2024-03-26T03:50:56,104 writing requirements to /tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/requires.txt 2024-03-26T03:50:56,105 writing top-level names to /tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/top_level.txt 2024-03-26T03:50:56,106 writing manifest file '/tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:56,134 reading manifest file '/tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:56,137 adding license file 'LICENSE' 2024-03-26T03:50:56,140 writing manifest file '/tmp/pip-modern-metadata-novfpl8m/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:56,141 creating '/tmp/pip-modern-metadata-novfpl8m/scarcc-0.1.1.dist-info' 2024-03-26T03:50:56,324 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-26T03:50:56,328 Source in /tmp/pip-wheel-ow3rscy2/scarcc_0c2bfe4d948a486fa3777fe81d93d7d3 has version 0.1.1, which satisfies requirement scarcc==0.1.1 from https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz 2024-03-26T03:50:56,329 Removed scarcc==0.1.1 from https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-cye7lx26' 2024-03-26T03:50:56,334 Created temporary directory: /tmp/pip-unpack-96sjq9pm 2024-03-26T03:50:56,335 Created temporary directory: /tmp/pip-unpack-htv81tv4 2024-03-26T03:50:56,348 Building wheels for collected packages: scarcc 2024-03-26T03:50:56,353 Created temporary directory: /tmp/pip-wheel-vw0mvcfv 2024-03-26T03:50:56,354 Destination directory: /tmp/pip-wheel-vw0mvcfv 2024-03-26T03:50:56,356 Building wheel for scarcc (pyproject.toml): started 2024-03-26T03:50:56,357 Running command Building wheel for scarcc (pyproject.toml) 2024-03-26T03:50:56,894 running bdist_wheel 2024-03-26T03:50:56,938 running build 2024-03-26T03:50:56,939 running build_py 2024-03-26T03:50:56,946 creating build 2024-03-26T03:50:56,946 creating build/lib 2024-03-26T03:50:56,947 creating build/lib/scarcc 2024-03-26T03:50:56,949 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-26T03:50:56,951 creating build/lib/scarcc/preparation 2024-03-26T03:50:56,952 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-26T03:50:56,954 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-26T03:50:56,956 creating build/lib/scarcc/utils 2024-03-26T03:50:56,957 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-26T03:50:56,959 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-26T03:50:56,962 creating build/lib/scarcc/sim_engine 2024-03-26T03:50:56,963 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-26T03:50:56,965 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-26T03:50:56,967 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-26T03:50:56,969 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-26T03:50:56,971 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-26T03:50:56,973 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-26T03:50:56,976 creating build/lib/scarcc/data_analysis 2024-03-26T03:50:56,977 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-26T03:50:56,979 creating build/lib/scarcc/preparation/perturbation 2024-03-26T03:50:56,980 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-26T03:50:56,982 creating build/lib/scarcc/preparation/target_gene 2024-03-26T03:50:56,983 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-26T03:50:56,986 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-26T03:50:56,988 creating build/lib/scarcc/preparation/metabolic_model 2024-03-26T03:50:56,989 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-26T03:50:56,991 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-26T03:50:56,993 creating build/lib/scarcc/preparation/perturbation/function 2024-03-26T03:50:56,994 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-26T03:50:56,996 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-26T03:50:56,998 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-26T03:50:57,000 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,001 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,003 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,005 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,007 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,009 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,013 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,013 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,015 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,018 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,019 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,022 creating build/lib/scarcc/data_analysis/flux 2024-03-26T03:50:57,023 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T03:50:57,025 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T03:50:57,026 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T03:50:57,029 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T03:50:57,030 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T03:50:57,033 creating build/lib/scarcc/data_analysis/plot 2024-03-26T03:50:57,034 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T03:50:57,036 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T03:50:57,038 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T03:50:57,040 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T03:50:57,042 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T03:50:57,044 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-26T03:50:57,045 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-26T03:50:57,047 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-26T03:50:57,049 creating build/lib/scarcc/data_analysis/growth 2024-03-26T03:50:57,050 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T03:50:57,052 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T03:50:57,054 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T03:50:57,056 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T03:50:57,058 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T03:50:57,080 installing to build/bdist.linux-armv7l/wheel 2024-03-26T03:50:57,081 running install 2024-03-26T03:50:57,104 running install_lib 2024-03-26T03:50:57,110 creating build/bdist.linux-armv7l 2024-03-26T03:50:57,111 creating build/bdist.linux-armv7l/wheel 2024-03-26T03:50:57,113 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-26T03:50:57,114 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-26T03:50:57,115 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-26T03:50:57,117 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T03:50:57,118 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T03:50:57,120 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T03:50:57,122 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T03:50:57,124 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,125 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,127 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,130 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,131 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,134 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T03:50:57,136 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-26T03:50:57,138 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-26T03:50:57,140 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-26T03:50:57,141 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-26T03:50:57,144 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-26T03:50:57,145 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-26T03:50:57,148 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-26T03:50:57,148 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-26T03:50:57,151 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-26T03:50:57,153 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,154 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,156 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,158 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,160 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T03:50:57,162 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-26T03:50:57,163 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-26T03:50:57,165 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-26T03:50:57,167 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-26T03:50:57,169 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,170 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,173 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,175 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,177 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,179 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,181 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T03:50:57,184 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-26T03:50:57,185 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T03:50:57,186 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T03:50:57,189 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T03:50:57,190 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T03:50:57,204 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T03:50:57,206 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T03:50:57,209 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T03:50:57,210 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T03:50:57,212 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T03:50:57,214 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T03:50:57,216 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T03:50:57,218 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T03:50:57,219 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-26T03:50:57,220 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-26T03:50:57,222 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-26T03:50:57,223 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-26T03:50:57,226 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T03:50:57,226 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T03:50:57,228 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T03:50:57,231 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T03:50:57,232 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T03:50:57,235 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T03:50:57,236 running install_egg_info 2024-03-26T03:50:57,247 running egg_info 2024-03-26T03:50:57,251 writing src/scarcc.egg-info/PKG-INFO 2024-03-26T03:50:57,254 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-26T03:50:57,256 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-26T03:50:57,257 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-26T03:50:57,275 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:57,278 adding license file 'LICENSE' 2024-03-26T03:50:57,282 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T03:50:57,284 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.1-py3.11.egg-info 2024-03-26T03:50:57,293 running install_scripts 2024-03-26T03:50:57,307 creating build/bdist.linux-armv7l/wheel/scarcc-0.1.1.dist-info/WHEEL 2024-03-26T03:50:57,309 creating '/tmp/pip-wheel-vw0mvcfv/.tmp-ku0d04cm/scarcc-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-26T03:50:57,312 adding 'scarcc/__init__.py' 2024-03-26T03:50:57,314 adding 'scarcc/data_analysis/__init__.py' 2024-03-26T03:50:57,315 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-26T03:50:57,317 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-26T03:50:57,319 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-26T03:50:57,320 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-26T03:50:57,321 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-26T03:50:57,323 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-26T03:50:57,325 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-26T03:50:57,327 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-26T03:50:57,328 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-26T03:50:57,330 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-26T03:50:57,332 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-26T03:50:57,333 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-26T03:50:57,335 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-26T03:50:57,337 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-26T03:50:57,338 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-26T03:50:57,339 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-26T03:50:57,340 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-26T03:50:57,342 adding 'scarcc/preparation/__init__.py' 2024-03-26T03:50:57,343 adding 'scarcc/preparation/find_directory.py' 2024-03-26T03:50:57,344 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-26T03:50:57,346 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-26T03:50:57,347 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-26T03:50:57,349 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-26T03:50:57,350 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-26T03:50:57,351 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-26T03:50:57,353 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-26T03:50:57,354 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-26T03:50:57,356 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-26T03:50:57,358 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-26T03:50:57,360 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-26T03:50:57,363 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-26T03:50:57,364 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-26T03:50:57,365 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-26T03:50:57,367 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-26T03:50:57,369 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-26T03:50:57,370 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-26T03:50:57,372 adding 'scarcc/sim_engine/__init__.py' 2024-03-26T03:50:57,373 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-26T03:50:57,375 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-26T03:50:57,376 adding 'scarcc/sim_engine/output.py' 2024-03-26T03:50:57,378 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-26T03:50:57,380 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-26T03:50:57,382 adding 'scarcc/utils/__init__.py' 2024-03-26T03:50:57,383 adding 'scarcc/utils/util.py' 2024-03-26T03:50:57,385 adding 'scarcc-0.1.1.dist-info/LICENSE' 2024-03-26T03:50:57,386 adding 'scarcc-0.1.1.dist-info/METADATA' 2024-03-26T03:50:57,387 adding 'scarcc-0.1.1.dist-info/WHEEL' 2024-03-26T03:50:57,388 adding 'scarcc-0.1.1.dist-info/top_level.txt' 2024-03-26T03:50:57,389 adding 'scarcc-0.1.1.dist-info/RECORD' 2024-03-26T03:50:57,392 removing build/bdist.linux-armv7l/wheel 2024-03-26T03:50:57,498 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-26T03:50:57,503 Created wheel for scarcc: filename=scarcc-0.1.1-py3-none-any.whl size=63782 sha256=49bc30639987874b31a8133c4976179ca76d46070620c5e00fb2c342f83a5164 2024-03-26T03:50:57,505 Stored in directory: /tmp/pip-ephem-wheel-cache-mt_wrb8d/wheels/88/cf/f7/1ad1f42b258e352ac5386fb359b7415e9071f4786060224706 2024-03-26T03:50:57,516 Successfully built scarcc 2024-03-26T03:50:57,521 Removed build tracker: '/tmp/pip-build-tracker-cye7lx26'