2024-03-26T21:35:37,890 Created temporary directory: /tmp/pip-build-tracker-adpw_yf3 2024-03-26T21:35:37,891 Initialized build tracking at /tmp/pip-build-tracker-adpw_yf3 2024-03-26T21:35:37,891 Created build tracker: /tmp/pip-build-tracker-adpw_yf3 2024-03-26T21:35:37,892 Entered build tracker: /tmp/pip-build-tracker-adpw_yf3 2024-03-26T21:35:37,893 Created temporary directory: /tmp/pip-wheel-u0yh_mll 2024-03-26T21:35:37,896 Created temporary directory: /tmp/pip-ephem-wheel-cache-m4u0q5ob 2024-03-26T21:35:37,920 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-26T21:35:37,924 2 location(s) to search for versions of scarcc: 2024-03-26T21:35:37,924 * https://pypi.org/simple/scarcc/ 2024-03-26T21:35:37,924 * https://www.piwheels.org/simple/scarcc/ 2024-03-26T21:35:37,925 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-26T21:35:37,925 Getting page https://pypi.org/simple/scarcc/ 2024-03-26T21:35:37,927 Found index url https://pypi.org/simple/ 2024-03-26T21:35:38,147 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-26T21:35:38,151 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-26T21:35:38,151 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-26T21:35:38,152 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-26T21:35:38,153 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,154 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-26T21:35:38,154 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,155 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-03-26T21:35:38,156 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,157 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-03-26T21:35:38,158 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/75/6b/711a0973554042f8eab900c92381eba54d1b5d869140a32887d25d8986e9/scarcc-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,159 Found link https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.1 2024-03-26T21:35:38,160 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/28/69/e00f174ae9649ccda95c44ef7d68190bfb4d806757682cd0ed448b86fc58/scarcc-0.1.2-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,161 Found link https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.2 2024-03-26T21:35:38,162 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-26T21:35:38,162 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-26T21:35:38,164 Found index url https://www.piwheels.org/simple/ 2024-03-26T21:35:38,390 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-26T21:35:38,394 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.1-py3-none-any.whl#sha256=49bc30639987874b31a8133c4976179ca76d46070620c5e00fb2c342f83a5164 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,394 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.0-py3-none-any.whl#sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,395 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,396 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-26T21:35:38,396 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-26T21:35:38,397 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-26T21:35:38,398 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-26T21:35:38,426 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-26T21:35:38,452 Collecting scarcc==0.1.2 2024-03-26T21:35:38,455 Created temporary directory: /tmp/pip-unpack-ieym84tj 2024-03-26T21:35:38,700 Downloading scarcc-0.1.2.tar.gz (52 kB) 2024-03-26T21:35:38,866 Added scarcc==0.1.2 from https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-adpw_yf3' 2024-03-26T21:35:38,870 Created temporary directory: /tmp/pip-build-env-11j8el0e 2024-03-26T21:35:38,875 Installing build dependencies: started 2024-03-26T21:35:38,876 Running command pip subprocess to install build dependencies 2024-03-26T21:35:40,031 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-26T21:35:40,525 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-26T21:35:42,171 Collecting setuptools>=40.6.0 2024-03-26T21:35:46,633 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-26T21:35:46,928 Collecting wheel 2024-03-26T21:35:51,191 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/wheel/wheel-0.43.0-py3-none-any.whl 2024-03-26T21:35:51,650 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-26T21:35:54,280 Installing collected packages: wheel, setuptools 2024-03-26T21:35:54,512 Creating /tmp/pip-build-env-11j8el0e/overlay/local/bin 2024-03-26T21:35:54,514 changing mode of /tmp/pip-build-env-11j8el0e/overlay/local/bin/wheel to 755 2024-03-26T21:35:56,818 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-26T21:35:57,313 Installing build dependencies: finished with status 'done' 2024-03-26T21:35:57,316 Getting requirements to build wheel: started 2024-03-26T21:35:57,317 Running command Getting requirements to build wheel 2024-03-26T21:35:57,837 running egg_info 2024-03-26T21:35:57,841 writing src/scarcc.egg-info/PKG-INFO 2024-03-26T21:35:57,845 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-26T21:35:57,848 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-26T21:35:57,849 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-26T21:35:57,882 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:57,885 adding license file 'LICENSE' 2024-03-26T21:35:57,889 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:57,965 Getting requirements to build wheel: finished with status 'done' 2024-03-26T21:35:57,974 Created temporary directory: /tmp/pip-modern-metadata-wfenmxgn 2024-03-26T21:35:57,976 Preparing metadata (pyproject.toml): started 2024-03-26T21:35:57,977 Running command Preparing metadata (pyproject.toml) 2024-03-26T21:35:58,465 running dist_info 2024-03-26T21:35:58,469 creating /tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info 2024-03-26T21:35:58,473 writing /tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/PKG-INFO 2024-03-26T21:35:58,477 writing dependency_links to /tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/dependency_links.txt 2024-03-26T21:35:58,479 writing requirements to /tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/requires.txt 2024-03-26T21:35:58,480 writing top-level names to /tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/top_level.txt 2024-03-26T21:35:58,482 writing manifest file '/tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:58,509 reading manifest file '/tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:58,511 adding license file 'LICENSE' 2024-03-26T21:35:58,515 writing manifest file '/tmp/pip-modern-metadata-wfenmxgn/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:58,516 creating '/tmp/pip-modern-metadata-wfenmxgn/scarcc-0.1.2.dist-info' 2024-03-26T21:35:58,698 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-26T21:35:58,703 Source in /tmp/pip-wheel-u0yh_mll/scarcc_7d740a6fda314a828753d211cb2c4173 has version 0.1.2, which satisfies requirement scarcc==0.1.2 from https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz 2024-03-26T21:35:58,704 Removed scarcc==0.1.2 from https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-adpw_yf3' 2024-03-26T21:35:58,709 Created temporary directory: /tmp/pip-unpack-ztr_40f9 2024-03-26T21:35:58,710 Created temporary directory: /tmp/pip-unpack-po2sa4vw 2024-03-26T21:35:58,723 Building wheels for collected packages: scarcc 2024-03-26T21:35:58,728 Created temporary directory: /tmp/pip-wheel-_gkz50ht 2024-03-26T21:35:58,729 Destination directory: /tmp/pip-wheel-_gkz50ht 2024-03-26T21:35:58,731 Building wheel for scarcc (pyproject.toml): started 2024-03-26T21:35:58,732 Running command Building wheel for scarcc (pyproject.toml) 2024-03-26T21:35:59,260 running bdist_wheel 2024-03-26T21:35:59,300 running build 2024-03-26T21:35:59,301 running build_py 2024-03-26T21:35:59,307 creating build 2024-03-26T21:35:59,308 creating build/lib 2024-03-26T21:35:59,309 creating build/lib/scarcc 2024-03-26T21:35:59,310 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-26T21:35:59,313 creating build/lib/scarcc/preparation 2024-03-26T21:35:59,314 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-26T21:35:59,316 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-26T21:35:59,318 creating build/lib/scarcc/utils 2024-03-26T21:35:59,319 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-26T21:35:59,321 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-26T21:35:59,323 creating build/lib/scarcc/sim_engine 2024-03-26T21:35:59,324 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-26T21:35:59,326 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-26T21:35:59,329 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-26T21:35:59,331 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-26T21:35:59,332 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-26T21:35:59,334 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-26T21:35:59,337 creating build/lib/scarcc/data_analysis 2024-03-26T21:35:59,337 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-26T21:35:59,340 creating build/lib/scarcc/preparation/perturbation 2024-03-26T21:35:59,341 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-26T21:35:59,343 creating build/lib/scarcc/preparation/target_gene 2024-03-26T21:35:59,344 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-26T21:35:59,346 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-26T21:35:59,348 creating build/lib/scarcc/preparation/metabolic_model 2024-03-26T21:35:59,349 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-26T21:35:59,351 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-26T21:35:59,353 creating build/lib/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,354 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,356 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,358 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,360 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,361 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,364 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,366 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,368 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,370 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,373 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,374 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,376 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,378 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,380 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,382 creating build/lib/scarcc/data_analysis/flux 2024-03-26T21:35:59,383 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T21:35:59,385 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T21:35:59,386 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T21:35:59,388 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T21:35:59,389 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-26T21:35:59,392 creating build/lib/scarcc/data_analysis/plot 2024-03-26T21:35:59,393 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T21:35:59,395 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T21:35:59,396 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T21:35:59,398 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T21:35:59,400 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-26T21:35:59,402 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-26T21:35:59,402 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-26T21:35:59,404 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-26T21:35:59,406 creating build/lib/scarcc/data_analysis/growth 2024-03-26T21:35:59,407 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T21:35:59,409 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T21:35:59,412 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T21:35:59,413 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T21:35:59,415 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-26T21:35:59,438 installing to build/bdist.linux-armv7l/wheel 2024-03-26T21:35:59,439 running install 2024-03-26T21:35:59,462 running install_lib 2024-03-26T21:35:59,468 creating build/bdist.linux-armv7l 2024-03-26T21:35:59,468 creating build/bdist.linux-armv7l/wheel 2024-03-26T21:35:59,470 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-26T21:35:59,471 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-26T21:35:59,473 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-26T21:35:59,474 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,475 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,477 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,480 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-26T21:35:59,482 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,483 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,485 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,488 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,490 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,492 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-26T21:35:59,494 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-26T21:35:59,496 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-26T21:35:59,498 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-26T21:35:59,499 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-26T21:35:59,501 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-26T21:35:59,502 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-26T21:35:59,504 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-26T21:35:59,505 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-26T21:35:59,508 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-26T21:35:59,510 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,510 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,513 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,515 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,516 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-26T21:35:59,519 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-26T21:35:59,520 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-26T21:35:59,521 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-26T21:35:59,523 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-26T21:35:59,525 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,526 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,529 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,531 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,533 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,535 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,537 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-26T21:35:59,540 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-26T21:35:59,542 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T21:35:59,543 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T21:35:59,545 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T21:35:59,547 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T21:35:59,549 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T21:35:59,551 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-26T21:35:59,553 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T21:35:59,554 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T21:35:59,556 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T21:35:59,558 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T21:35:59,559 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T21:35:59,561 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-26T21:35:59,563 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-26T21:35:59,564 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-26T21:35:59,565 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-26T21:35:59,567 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-26T21:35:59,569 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T21:35:59,570 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T21:35:59,572 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T21:35:59,574 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T21:35:59,576 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T21:35:59,578 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-26T21:35:59,579 running install_egg_info 2024-03-26T21:35:59,590 running egg_info 2024-03-26T21:35:59,594 writing src/scarcc.egg-info/PKG-INFO 2024-03-26T21:35:59,597 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-26T21:35:59,599 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-26T21:35:59,600 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-26T21:35:59,618 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:59,621 adding license file 'LICENSE' 2024-03-26T21:35:59,625 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-26T21:35:59,627 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.2-py3.11.egg-info 2024-03-26T21:35:59,636 running install_scripts 2024-03-26T21:35:59,650 creating build/bdist.linux-armv7l/wheel/scarcc-0.1.2.dist-info/WHEEL 2024-03-26T21:35:59,652 creating '/tmp/pip-wheel-_gkz50ht/.tmp-6st47uhx/scarcc-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-26T21:35:59,654 adding 'scarcc/__init__.py' 2024-03-26T21:35:59,656 adding 'scarcc/data_analysis/__init__.py' 2024-03-26T21:35:59,658 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-26T21:35:59,659 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-26T21:35:59,661 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-26T21:35:59,662 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-26T21:35:59,664 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-26T21:35:59,665 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-26T21:35:59,667 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-26T21:35:59,668 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-26T21:35:59,670 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-26T21:35:59,671 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-26T21:35:59,673 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-26T21:35:59,674 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-26T21:35:59,676 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-26T21:35:59,677 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-26T21:35:59,678 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-26T21:35:59,680 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-26T21:35:59,681 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-26T21:35:59,683 adding 'scarcc/preparation/__init__.py' 2024-03-26T21:35:59,684 adding 'scarcc/preparation/find_directory.py' 2024-03-26T21:35:59,685 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-26T21:35:59,687 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-26T21:35:59,688 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-26T21:35:59,690 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-26T21:35:59,691 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-26T21:35:59,692 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-26T21:35:59,694 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-26T21:35:59,695 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-26T21:35:59,697 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-26T21:35:59,699 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-26T21:35:59,702 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-26T21:35:59,704 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-26T21:35:59,706 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-26T21:35:59,707 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-26T21:35:59,709 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-26T21:35:59,710 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-26T21:35:59,712 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-26T21:35:59,713 adding 'scarcc/sim_engine/__init__.py' 2024-03-26T21:35:59,715 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-26T21:35:59,716 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-26T21:35:59,718 adding 'scarcc/sim_engine/output.py' 2024-03-26T21:35:59,720 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-26T21:35:59,722 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-26T21:35:59,723 adding 'scarcc/utils/__init__.py' 2024-03-26T21:35:59,725 adding 'scarcc/utils/util.py' 2024-03-26T21:35:59,727 adding 'scarcc-0.1.2.dist-info/LICENSE' 2024-03-26T21:35:59,728 adding 'scarcc-0.1.2.dist-info/METADATA' 2024-03-26T21:35:59,729 adding 'scarcc-0.1.2.dist-info/WHEEL' 2024-03-26T21:35:59,730 adding 'scarcc-0.1.2.dist-info/top_level.txt' 2024-03-26T21:35:59,731 adding 'scarcc-0.1.2.dist-info/RECORD' 2024-03-26T21:35:59,734 removing build/bdist.linux-armv7l/wheel 2024-03-26T21:35:59,840 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-26T21:35:59,846 Created wheel for scarcc: filename=scarcc-0.1.2-py3-none-any.whl size=64033 sha256=a465928c10fba6025f08f5eeb9d6d01113e5ce57f6ee6f2b96ab57315293fef3 2024-03-26T21:35:59,847 Stored in directory: /tmp/pip-ephem-wheel-cache-m4u0q5ob/wheels/8c/48/56/80ecaa1d2cd548f02aaacccd24d5b887353ab14126bdc8bcb4 2024-03-26T21:35:59,859 Successfully built scarcc 2024-03-26T21:35:59,863 Removed build tracker: '/tmp/pip-build-tracker-adpw_yf3'