2024-03-27T00:33:52,420 Created temporary directory: /tmp/pip-build-tracker-gg7igqyj 2024-03-27T00:33:52,421 Initialized build tracking at /tmp/pip-build-tracker-gg7igqyj 2024-03-27T00:33:52,422 Created build tracker: /tmp/pip-build-tracker-gg7igqyj 2024-03-27T00:33:52,422 Entered build tracker: /tmp/pip-build-tracker-gg7igqyj 2024-03-27T00:33:52,423 Created temporary directory: /tmp/pip-wheel-trrbf_kw 2024-03-27T00:33:52,426 Created temporary directory: /tmp/pip-ephem-wheel-cache-hmw_l19x 2024-03-27T00:33:52,448 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-27T00:33:52,451 2 location(s) to search for versions of scarcc: 2024-03-27T00:33:52,451 * https://pypi.org/simple/scarcc/ 2024-03-27T00:33:52,451 * https://www.piwheels.org/simple/scarcc/ 2024-03-27T00:33:52,452 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-27T00:33:52,453 Getting page https://pypi.org/simple/scarcc/ 2024-03-27T00:33:52,454 Found index url https://pypi.org/simple/ 2024-03-27T00:33:52,674 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-27T00:33:52,678 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-27T00:33:52,678 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-27T00:33:52,679 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-27T00:33:52,679 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,680 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-27T00:33:52,681 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,682 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-03-27T00:33:52,683 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,684 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-03-27T00:33:52,685 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/75/6b/711a0973554042f8eab900c92381eba54d1b5d869140a32887d25d8986e9/scarcc-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,685 Found link https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.1 2024-03-27T00:33:52,686 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/28/69/e00f174ae9649ccda95c44ef7d68190bfb4d806757682cd0ed448b86fc58/scarcc-0.1.2-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,687 Found link https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.2 2024-03-27T00:33:52,688 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/20/e1/4040d4340571bfda4c1684de44829cd2b4d9acf65640fd8e94dea7485bd1/scarcc-0.1.3-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,689 Found link https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.3 2024-03-27T00:33:52,690 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-27T00:33:52,690 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-27T00:33:52,691 Found index url https://www.piwheels.org/simple/ 2024-03-27T00:33:52,854 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-27T00:33:52,857 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.2-py3-none-any.whl#sha256=a465928c10fba6025f08f5eeb9d6d01113e5ce57f6ee6f2b96ab57315293fef3 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,857 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.1-py3-none-any.whl#sha256=49bc30639987874b31a8133c4976179ca76d46070620c5e00fb2c342f83a5164 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,858 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.0-py3-none-any.whl#sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,858 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,859 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-27T00:33:52,859 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-27T00:33:52,860 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-27T00:33:52,861 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-27T00:33:52,879 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-27T00:33:52,897 Collecting scarcc==0.1.3 2024-03-27T00:33:52,900 Created temporary directory: /tmp/pip-unpack-g4x25ih8 2024-03-27T00:33:53,111 Downloading scarcc-0.1.3.tar.gz (52 kB) 2024-03-27T00:33:53,272 Added scarcc==0.1.3 from https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-gg7igqyj' 2024-03-27T00:33:53,277 Created temporary directory: /tmp/pip-build-env-t_ue1rh5 2024-03-27T00:33:53,281 Installing build dependencies: started 2024-03-27T00:33:53,282 Running command pip subprocess to install build dependencies 2024-03-27T00:33:54,411 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-27T00:33:54,908 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-27T00:33:56,628 Collecting setuptools>=40.6.0 2024-03-27T00:33:56,642 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-27T00:33:56,874 Collecting wheel 2024-03-27T00:33:56,888 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-27T00:33:59,511 Installing collected packages: wheel, setuptools 2024-03-27T00:33:59,733 Creating /tmp/pip-build-env-t_ue1rh5/overlay/local/bin 2024-03-27T00:33:59,736 changing mode of /tmp/pip-build-env-t_ue1rh5/overlay/local/bin/wheel to 755 2024-03-27T00:34:01,954 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-27T00:34:02,446 Installing build dependencies: finished with status 'done' 2024-03-27T00:34:02,449 Getting requirements to build wheel: started 2024-03-27T00:34:02,450 Running command Getting requirements to build wheel 2024-03-27T00:34:02,980 running egg_info 2024-03-27T00:34:02,984 writing src/scarcc.egg-info/PKG-INFO 2024-03-27T00:34:02,988 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-27T00:34:02,990 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-27T00:34:02,992 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-27T00:34:03,026 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:03,029 adding license file 'LICENSE' 2024-03-27T00:34:03,033 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:03,109 Getting requirements to build wheel: finished with status 'done' 2024-03-27T00:34:03,117 Created temporary directory: /tmp/pip-modern-metadata-_j9iwx49 2024-03-27T00:34:03,120 Preparing metadata (pyproject.toml): started 2024-03-27T00:34:03,121 Running command Preparing metadata (pyproject.toml) 2024-03-27T00:34:03,609 running dist_info 2024-03-27T00:34:03,614 creating /tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info 2024-03-27T00:34:03,618 writing /tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/PKG-INFO 2024-03-27T00:34:03,622 writing dependency_links to /tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/dependency_links.txt 2024-03-27T00:34:03,624 writing requirements to /tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/requires.txt 2024-03-27T00:34:03,625 writing top-level names to /tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/top_level.txt 2024-03-27T00:34:03,626 writing manifest file '/tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:03,654 reading manifest file '/tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:03,656 adding license file 'LICENSE' 2024-03-27T00:34:03,659 writing manifest file '/tmp/pip-modern-metadata-_j9iwx49/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:03,660 creating '/tmp/pip-modern-metadata-_j9iwx49/scarcc-0.1.3.dist-info' 2024-03-27T00:34:03,839 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-27T00:34:03,843 Source in /tmp/pip-wheel-trrbf_kw/scarcc_375abb1459d3424e9eb2548bac92c69b has version 0.1.3, which satisfies requirement scarcc==0.1.3 from https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz 2024-03-27T00:34:03,844 Removed scarcc==0.1.3 from https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-gg7igqyj' 2024-03-27T00:34:03,849 Created temporary directory: /tmp/pip-unpack-hf2f11mv 2024-03-27T00:34:03,850 Created temporary directory: /tmp/pip-unpack-o5b4roi5 2024-03-27T00:34:03,864 Building wheels for collected packages: scarcc 2024-03-27T00:34:03,868 Created temporary directory: /tmp/pip-wheel-yovgcf7r 2024-03-27T00:34:03,869 Destination directory: /tmp/pip-wheel-yovgcf7r 2024-03-27T00:34:03,871 Building wheel for scarcc (pyproject.toml): started 2024-03-27T00:34:03,872 Running command Building wheel for scarcc (pyproject.toml) 2024-03-27T00:34:04,404 running bdist_wheel 2024-03-27T00:34:04,445 running build 2024-03-27T00:34:04,446 running build_py 2024-03-27T00:34:04,452 creating build 2024-03-27T00:34:04,453 creating build/lib 2024-03-27T00:34:04,453 creating build/lib/scarcc 2024-03-27T00:34:04,454 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-27T00:34:04,457 creating build/lib/scarcc/preparation 2024-03-27T00:34:04,458 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-27T00:34:04,459 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-27T00:34:04,461 creating build/lib/scarcc/utils 2024-03-27T00:34:04,462 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-27T00:34:04,464 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-27T00:34:04,466 creating build/lib/scarcc/sim_engine 2024-03-27T00:34:04,467 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-27T00:34:04,469 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-27T00:34:04,471 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-27T00:34:04,473 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-27T00:34:04,474 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-27T00:34:04,477 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-27T00:34:04,479 creating build/lib/scarcc/data_analysis 2024-03-27T00:34:04,480 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-27T00:34:04,482 creating build/lib/scarcc/preparation/perturbation 2024-03-27T00:34:04,483 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-27T00:34:04,485 creating build/lib/scarcc/preparation/target_gene 2024-03-27T00:34:04,486 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-27T00:34:04,488 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-27T00:34:04,490 creating build/lib/scarcc/preparation/metabolic_model 2024-03-27T00:34:04,491 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-27T00:34:04,493 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-27T00:34:04,495 creating build/lib/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,496 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,498 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,500 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,502 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,503 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,506 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,508 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,509 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,512 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,514 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,515 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,517 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,520 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,521 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,523 creating build/lib/scarcc/data_analysis/flux 2024-03-27T00:34:04,524 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-27T00:34:04,526 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-27T00:34:04,527 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-27T00:34:04,529 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-27T00:34:04,531 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-27T00:34:04,533 creating build/lib/scarcc/data_analysis/plot 2024-03-27T00:34:04,534 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-27T00:34:04,536 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-27T00:34:04,538 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-27T00:34:04,543 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-27T00:34:04,545 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-27T00:34:04,547 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-27T00:34:04,548 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-27T00:34:04,550 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-27T00:34:04,551 creating build/lib/scarcc/data_analysis/growth 2024-03-27T00:34:04,552 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-27T00:34:04,554 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-27T00:34:04,556 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-27T00:34:04,558 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-27T00:34:04,560 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-27T00:34:04,583 installing to build/bdist.linux-armv7l/wheel 2024-03-27T00:34:04,583 running install 2024-03-27T00:34:04,606 running install_lib 2024-03-27T00:34:04,612 creating build/bdist.linux-armv7l 2024-03-27T00:34:04,613 creating build/bdist.linux-armv7l/wheel 2024-03-27T00:34:04,614 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-27T00:34:04,616 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-27T00:34:04,617 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-27T00:34:04,619 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,620 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,622 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,624 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-27T00:34:04,626 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,627 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,629 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,631 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,633 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,635 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-27T00:34:04,637 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-27T00:34:04,639 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-27T00:34:04,641 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-27T00:34:04,642 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-27T00:34:04,645 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-27T00:34:04,646 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-27T00:34:04,648 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-27T00:34:04,649 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-27T00:34:04,651 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-27T00:34:04,654 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,655 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,656 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,659 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,660 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-27T00:34:04,662 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-27T00:34:04,663 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-27T00:34:04,665 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-27T00:34:04,667 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-27T00:34:04,670 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,671 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,674 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,676 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,678 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,680 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,682 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-27T00:34:04,684 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-27T00:34:04,686 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-27T00:34:04,687 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-27T00:34:04,689 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-27T00:34:04,690 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-27T00:34:04,692 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-27T00:34:04,693 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-27T00:34:04,696 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-27T00:34:04,697 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-27T00:34:04,699 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-27T00:34:04,701 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-27T00:34:04,703 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-27T00:34:04,704 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-27T00:34:04,706 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-27T00:34:04,707 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-27T00:34:04,709 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-27T00:34:04,710 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-27T00:34:04,713 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-27T00:34:04,713 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-27T00:34:04,715 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-27T00:34:04,718 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-27T00:34:04,720 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-27T00:34:04,722 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-27T00:34:04,723 running install_egg_info 2024-03-27T00:34:04,735 running egg_info 2024-03-27T00:34:04,739 writing src/scarcc.egg-info/PKG-INFO 2024-03-27T00:34:04,742 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-27T00:34:04,744 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-27T00:34:04,745 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-27T00:34:04,762 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:04,765 adding license file 'LICENSE' 2024-03-27T00:34:04,769 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-27T00:34:04,771 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.3-py3.11.egg-info 2024-03-27T00:34:04,780 running install_scripts 2024-03-27T00:34:04,792 creating build/bdist.linux-armv7l/wheel/scarcc-0.1.3.dist-info/WHEEL 2024-03-27T00:34:04,795 creating '/tmp/pip-wheel-yovgcf7r/.tmp-i7ou05wc/scarcc-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-27T00:34:04,797 adding 'scarcc/__init__.py' 2024-03-27T00:34:04,798 adding 'scarcc/data_analysis/__init__.py' 2024-03-27T00:34:04,800 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-27T00:34:04,801 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-27T00:34:04,802 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-27T00:34:04,804 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-27T00:34:04,805 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-27T00:34:04,807 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-27T00:34:04,808 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-27T00:34:04,810 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-27T00:34:04,811 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-27T00:34:04,813 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-27T00:34:04,814 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-27T00:34:04,815 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-27T00:34:04,817 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-27T00:34:04,819 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-27T00:34:04,820 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-27T00:34:04,821 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-27T00:34:04,823 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-27T00:34:04,824 adding 'scarcc/preparation/__init__.py' 2024-03-27T00:34:04,825 adding 'scarcc/preparation/find_directory.py' 2024-03-27T00:34:04,827 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-27T00:34:04,828 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-27T00:34:04,830 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-27T00:34:04,832 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-27T00:34:04,833 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-27T00:34:04,834 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-27T00:34:04,836 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-27T00:34:04,838 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-27T00:34:04,840 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-27T00:34:04,842 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-27T00:34:04,844 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-27T00:34:04,847 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-27T00:34:04,848 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-27T00:34:04,850 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-27T00:34:04,851 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-27T00:34:04,853 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-27T00:34:04,854 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-27T00:34:04,856 adding 'scarcc/sim_engine/__init__.py' 2024-03-27T00:34:04,858 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-27T00:34:04,859 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-27T00:34:04,861 adding 'scarcc/sim_engine/output.py' 2024-03-27T00:34:04,863 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-27T00:34:04,865 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-27T00:34:04,866 adding 'scarcc/utils/__init__.py' 2024-03-27T00:34:04,868 adding 'scarcc/utils/util.py' 2024-03-27T00:34:04,870 adding 'scarcc-0.1.3.dist-info/LICENSE' 2024-03-27T00:34:04,871 adding 'scarcc-0.1.3.dist-info/METADATA' 2024-03-27T00:34:04,872 adding 'scarcc-0.1.3.dist-info/WHEEL' 2024-03-27T00:34:04,872 adding 'scarcc-0.1.3.dist-info/top_level.txt' 2024-03-27T00:34:04,874 adding 'scarcc-0.1.3.dist-info/RECORD' 2024-03-27T00:34:04,876 removing build/bdist.linux-armv7l/wheel 2024-03-27T00:34:04,981 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-27T00:34:04,987 Created wheel for scarcc: filename=scarcc-0.1.3-py3-none-any.whl size=64122 sha256=b903747d0529e1a6a14bf17b79a839c1e515a4e550ac462f1041e98516686c1d 2024-03-27T00:34:04,988 Stored in directory: /tmp/pip-ephem-wheel-cache-hmw_l19x/wheels/76/5f/07/8fd2d83150d38c63eae333a470dfd31437000e8091eba2b439 2024-03-27T00:34:04,999 Successfully built scarcc 2024-03-27T00:34:05,004 Removed build tracker: '/tmp/pip-build-tracker-gg7igqyj'