2024-03-27T09:01:52,003 Created temporary directory: /tmp/pip-build-tracker-ydogqzmr
2024-03-27T09:01:52,004 Initialized build tracking at /tmp/pip-build-tracker-ydogqzmr
2024-03-27T09:01:52,005 Created build tracker: /tmp/pip-build-tracker-ydogqzmr
2024-03-27T09:01:52,005 Entered build tracker: /tmp/pip-build-tracker-ydogqzmr
2024-03-27T09:01:52,006 Created temporary directory: /tmp/pip-wheel-6kq4p0s3
2024-03-27T09:01:52,009 Created temporary directory: /tmp/pip-ephem-wheel-cache-u2ifm_zs
2024-03-27T09:01:52,031 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-27T09:01:52,034 2 location(s) to search for versions of moleculekit:
2024-03-27T09:01:52,034 * https://pypi.org/simple/moleculekit/
2024-03-27T09:01:52,034 * https://www.piwheels.org/simple/moleculekit/
2024-03-27T09:01:52,035 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-03-27T09:01:52,036 Getting page https://pypi.org/simple/moleculekit/
2024-03-27T09:01:52,037 Found index url https://pypi.org/simple/
2024-03-27T09:01:52,300 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-03-27T09:01:52,341   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,341   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-03-27T09:01:52,342   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,343   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-03-27T09:01:52,343   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,344   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-03-27T09:01:52,345   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,346   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-03-27T09:01:52,346   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,347   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-03-27T09:01:52,348   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,348   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-03-27T09:01:52,349   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,350   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-03-27T09:01:52,350   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,351   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-03-27T09:01:52,351   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,352   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-03-27T09:01:52,353   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,353   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-03-27T09:01:52,354   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,354   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-03-27T09:01:52,355   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,356   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-03-27T09:01:52,356   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,357   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-03-27T09:01:52,358   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,358   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-03-27T09:01:52,359   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,360   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-03-27T09:01:52,361   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,361   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-03-27T09:01:52,362   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,362   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-03-27T09:01:52,363   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,363   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-03-27T09:01:52,364   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,364   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-03-27T09:01:52,365   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,366   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-03-27T09:01:52,366   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,367   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-03-27T09:01:52,368   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,368   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-03-27T09:01:52,369   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,370   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-03-27T09:01:52,371   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,371   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-03-27T09:01:52,372   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,372   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-03-27T09:01:52,373   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,373   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-03-27T09:01:52,374   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,374   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-03-27T09:01:52,375   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,375   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-03-27T09:01:52,376   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,377   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-03-27T09:01:52,377   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,378   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-03-27T09:01:52,379   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,379   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-03-27T09:01:52,380   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,381   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-03-27T09:01:52,382   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,382   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-03-27T09:01:52,383   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,383   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-03-27T09:01:52,384   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-03-27T09:01:52,385   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2024-03-27T09:01:52,387   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
2024-03-27T09:01:52,387   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/94/5a/b800d3737fc73a0197bf983ce179f8bedaa71a331029a733aefedc2a8a0c/moleculekit-0.3.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,388   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2024-03-27T09:01:52,391   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
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2024-03-27T09:01:52,392   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-03-27T09:01:52,392   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,393   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-03-27T09:01:52,393   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,394   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
2024-03-27T09:01:52,394   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ed/8c/cf4a2f026f7b867bcc33cfac6c1fede5ee244c962112f0dc245fcac0939b/moleculekit-0.4.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,395   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-03-27T09:01:52,396   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,396   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
2024-03-27T09:01:52,397   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/26/45/55b970222953abfaff88d3ee5bbe64b544af8e686254b80f9dbcdc027754/moleculekit-0.4.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,398   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-03-27T09:01:52,398   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,399   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
2024-03-27T09:01:52,400   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3f/a5/68b5af554f766d3dceef94275a75af28358200e0f741a86d38db878c60e1/moleculekit-0.4.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,400   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
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2024-03-27T09:01:52,402   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
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2024-03-27T09:01:52,403   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
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2024-03-27T09:01:52,404   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
2024-03-27T09:01:52,405   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/c2/ae/6dcb36295ba009458f4ac17d3099f65f30ef7b52ee289ce857eaa09901e9/moleculekit-0.5.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-27T09:01:52,406   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-27T09:01:52,408   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,409   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T09:01:52,409   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-27T09:01:52,412   Found link https://files.pythonhosted.org/packages/ab/f4/62f8b76e0a25ee6b464bdbc1091fcd00f7a573f812621a25dd317ba75abc/moleculekit-0.6.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.6.8
2024-03-27T09:01:52,412   Found link https://files.pythonhosted.org/packages/17/1c/02715b1ba7af95549df42e637af515cc5f062c0a6fb8bdeca03404949043/moleculekit-0.7.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.0
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2024-03-27T09:01:52,427   Found link https://files.pythonhosted.org/packages/b9/00/f8d458320556166424a904edf41546e5d55d31743c27c8f63467f607ac62/moleculekit-0.9.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.5
2024-03-27T09:01:52,428   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-03-27T09:01:52,429   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-03-27T09:01:52,429   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-03-27T09:01:52,430   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-03-27T09:01:52,431   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-03-27T09:01:52,432   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-03-27T09:01:52,432   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-03-27T09:01:52,433   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-03-27T09:01:52,434   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-03-27T09:01:52,434   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-03-27T09:01:52,436   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-03-27T09:01:52,436   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-03-27T09:01:52,437   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-03-27T09:01:52,437   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-03-27T09:01:52,438   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-03-27T09:01:52,438   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-03-27T09:01:52,439   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-03-27T09:01:52,439   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-03-27T09:01:52,440   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-03-27T09:01:52,441   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-03-27T09:01:52,442   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-03-27T09:01:52,442   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-03-27T09:01:52,443   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-03-27T09:01:52,444   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-03-27T09:01:52,444   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-03-27T09:01:52,445   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-03-27T09:01:52,446   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-03-27T09:01:52,447   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-03-27T09:01:52,448   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-03-27T09:01:52,448   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-03-27T09:01:52,449   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-03-27T09:01:52,449   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-03-27T09:01:52,450   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-03-27T09:01:52,450   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-03-27T09:01:52,451   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-03-27T09:01:52,452   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-03-27T09:01:52,452   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-03-27T09:01:52,453   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-03-27T09:01:52,454   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-03-27T09:01:52,455   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-03-27T09:01:52,455   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-03-27T09:01:52,456   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-03-27T09:01:52,457   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-03-27T09:01:52,457   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-03-27T09:01:52,458   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-03-27T09:01:52,459   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-03-27T09:01:52,460   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-03-27T09:01:52,460   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-03-27T09:01:52,461   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-03-27T09:01:52,462   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-03-27T09:01:52,463   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-03-27T09:01:52,464   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-03-27T09:01:52,465   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-03-27T09:01:52,466   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-03-27T09:01:52,467   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-03-27T09:01:52,468   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-03-27T09:01:52,469   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-03-27T09:01:52,470   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-03-27T09:01:52,471   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-03-27T09:01:52,472   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-03-27T09:01:52,473   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-03-27T09:01:52,474   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-03-27T09:01:52,475   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-03-27T09:01:52,476   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-03-27T09:01:52,477   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-03-27T09:01:52,478   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-03-27T09:01:52,478   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-03-27T09:01:52,479   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-03-27T09:01:52,480   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-03-27T09:01:52,481   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-03-27T09:01:52,482   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-03-27T09:01:52,483   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-03-27T09:01:52,483   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-03-27T09:01:52,484   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-03-27T09:01:52,485   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-03-27T09:01:52,486   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-03-27T09:01:52,487   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-03-27T09:01:52,488   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-03-27T09:01:52,489   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-03-27T09:01:52,490   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-03-27T09:01:52,491   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-03-27T09:01:52,492   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-03-27T09:01:52,493   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-03-27T09:01:52,494   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-03-27T09:01:52,495   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-03-27T09:01:52,496   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-03-27T09:01:52,497   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-03-27T09:01:52,498   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-03-27T09:01:52,500   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-03-27T09:01:52,501   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-03-27T09:01:52,502   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-03-27T09:01:52,503   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-03-27T09:01:52,505   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-03-27T09:01:52,506   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-03-27T09:01:52,507   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-03-27T09:01:52,509   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-03-27T09:01:52,510   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-03-27T09:01:52,511   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-03-27T09:01:52,512   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-03-27T09:01:52,514   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-03-27T09:01:52,515   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-03-27T09:01:52,516   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-03-27T09:01:52,517   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-03-27T09:01:52,518   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-03-27T09:01:52,519   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-03-27T09:01:52,521   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-03-27T09:01:52,522   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-03-27T09:01:52,523 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-03-27T09:01:52,524 Getting page https://www.piwheels.org/simple/moleculekit/
2024-03-27T09:01:52,526 Found index url https://www.piwheels.org/simple/
2024-03-27T09:01:53,104 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-03-27T09:01:53,189   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,190   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,191   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv6l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,192   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,192   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,193   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,193   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv6l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,194   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,194   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,195   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv7l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv6l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,196   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv6l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,197   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv7l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,198   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv6l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv7l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,199   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,200   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv6l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp39-cp39-linux_armv7l.whl#sha256=cf4ada47c2ea30339425f65c3707cc59e00ed62cca2560b1aebadd2639a198ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,201   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv6l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,202   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp311-cp311-linux_armv7l.whl#sha256=03de975f4606a6b37e60bcdb2357aa334c90c398875557283fe7c02b4f65dbc9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv6l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T09:01:53,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.21-cp39-cp39-linux_armv7l.whl#sha256=65e25cf453c606d795f3baffce7e164e18d499295c8cb10ffd1a76bda8c01179 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-27T09:01:53,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv6l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T09:01:53,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,316   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,317   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,317   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,318   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,319   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,320   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,321   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,322   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,323   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,324   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,336   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,336   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,337   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,338   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,339   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,339   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,340   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,341   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,342   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,343   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,343   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,344   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,345   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,346   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,347   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,348   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T09:01:53,349   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T09:01:53,357   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T09:01:53,359   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,360   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,363   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,364   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,367   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,369   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,370   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,372   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,373   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,375   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,375   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,376   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,377   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,378   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,379   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,380   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,381   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,382   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,382   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,383   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,384   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,384   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,390   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,392   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T09:01:53,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T09:01:53,412   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T09:01:53,412 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-03-27T09:01:53,413 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-03-27T09:01:53,453 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-03-27T09:01:53,472 Collecting moleculekit==1.8.28
2024-03-27T09:01:53,475   Created temporary directory: /tmp/pip-unpack-9q1srnpm
2024-03-27T09:01:53,805   Downloading moleculekit-1.8.28.tar.gz (6.8 MB)
2024-03-27T09:01:57,094   Added moleculekit==1.8.28 from https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz to build tracker '/tmp/pip-build-tracker-ydogqzmr'
2024-03-27T09:01:57,103   Created temporary directory: /tmp/pip-build-env-z_6iankf
2024-03-27T09:01:57,107   Installing build dependencies: started
2024-03-27T09:01:57,109   Running command pip subprocess to install build dependencies
2024-03-27T09:01:58,277   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-27T09:01:58,837   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-27T09:02:00,440   Collecting setuptools
2024-03-27T09:02:05,401     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB)
2024-03-27T09:02:06,053     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T09:02:06,057     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T09:02:06,061     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T09:02:06,065     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T09:02:06,069     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T09:02:06,367   Collecting numpy>=1.18.5
2024-03-27T09:02:06,578     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-03-27T09:02:09,079   Collecting Cython>=0.29.21
2024-03-27T09:02:09,217     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp311-cp311-linux_armv7l.whl (11.7 MB)
2024-03-27T09:02:10,708   Collecting toml
2024-03-27T09:02:10,806     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-03-27T09:02:11,084   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-03-27T09:02:11,264     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-03-27T09:02:13,900   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-03-27T09:02:13,932     Creating /tmp/pip-build-env-z_6iankf/overlay/local/bin
2024-03-27T09:02:13,934     changing mode of /tmp/pip-build-env-z_6iankf/overlay/local/bin/versioneer to 755
2024-03-27T09:02:29,438     changing mode of /tmp/pip-build-env-z_6iankf/overlay/local/bin/f2py to 755
2024-03-27T09:02:35,796     changing mode of /tmp/pip-build-env-z_6iankf/overlay/local/bin/cygdb to 755
2024-03-27T09:02:35,798     changing mode of /tmp/pip-build-env-z_6iankf/overlay/local/bin/cython to 755
2024-03-27T09:02:35,801     changing mode of /tmp/pip-build-env-z_6iankf/overlay/local/bin/cythonize to 755
2024-03-27T09:02:35,851   Successfully installed Cython-3.0.9 numpy-1.26.4 setuptools-69.2.0 toml-0.10.2 versioneer-0.28
2024-03-27T09:02:36,603   Installing build dependencies: finished with status 'done'
2024-03-27T09:02:36,607   Getting requirements to build wheel: started
2024-03-27T09:02:36,609   Running command Getting requirements to build wheel
2024-03-27T09:03:12,348   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-03-27T09:03:20,837   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,838   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,838   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,839   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,839   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,840   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,840   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,841   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,841   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,842   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,842   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T09:03:20,843   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T09:03:20,843   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T09:03:20,844   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T09:03:20,845   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T09:03:20,846   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-03-27T09:03:20,846   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-03-27T09:03:20,847   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-03-27T09:03:20,847   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-03-27T09:03:20,848   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-03-27T09:03:20,849   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-03-27T09:03:20,849   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-03-27T09:03:20,850   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-03-27T09:03:20,851   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-03-27T09:03:20,851   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-03-27T09:03:20,852   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-03-27T09:03:20,853   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-03-27T09:03:20,854   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-03-27T09:03:20,854   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-03-27T09:03:20,855   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-03-27T09:03:21,119   running egg_info
2024-03-27T09:03:21,126   writing moleculekit.egg-info/PKG-INFO
2024-03-27T09:03:21,129   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-27T09:03:21,132   writing requirements to moleculekit.egg-info/requires.txt
2024-03-27T09:03:21,133   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-27T09:03:21,166   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,167   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,167   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,168   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,168   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,169   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,169   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,170   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,171   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,171   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,172   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,172   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,173   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,174   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,174   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,175   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,175   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,176   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:21,176   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T09:03:21,205   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T09:03:21,232   reading manifest template 'MANIFEST.in'
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2024-03-27T09:03:21,539   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T09:03:23,200   Getting requirements to build wheel: finished with status 'done'
2024-03-27T09:03:23,215   Installing backend dependencies: started
2024-03-27T09:03:23,216   Running command pip subprocess to install backend dependencies
2024-03-27T09:03:25,164   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-27T09:03:25,759   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-27T09:03:26,844   Collecting wheel
2024-03-27T09:03:26,859     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
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2024-03-27T09:03:29,637     Creating /tmp/pip-build-env-z_6iankf/normal/local/bin
2024-03-27T09:03:29,639     changing mode of /tmp/pip-build-env-z_6iankf/normal/local/bin/wheel to 755
2024-03-27T09:03:29,650   Successfully installed wheel-0.43.0
2024-03-27T09:03:30,185   Installing backend dependencies: finished with status 'done'
2024-03-27T09:03:30,187   Created temporary directory: /tmp/pip-modern-metadata-yymzubqp
2024-03-27T09:03:30,190   Preparing metadata (pyproject.toml): started
2024-03-27T09:03:30,191   Running command Preparing metadata (pyproject.toml)
2024-03-27T09:03:33,109   running dist_info
2024-03-27T09:03:33,111   creating /tmp/pip-modern-metadata-yymzubqp/moleculekit.egg-info
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2024-03-27T09:03:33,174   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,174   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,175   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,175   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,176   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,176   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,177   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,178   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,178   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,178   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,179   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,179   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,180   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,180   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,181   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,181   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,182   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,182   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,183   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,184   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,184   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,185   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,185   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,186   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,187   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,187   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,188   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,188   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,189   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,189   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,189   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,190   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,190   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,191   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,192   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,192   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,193   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,193   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,193   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,194   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,195   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,195   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:33,199   reading manifest file '/tmp/pip-modern-metadata-yymzubqp/moleculekit.egg-info/SOURCES.txt'
2024-03-27T09:03:33,201   reading manifest template 'MANIFEST.in'
2024-03-27T09:03:33,490   no previously-included directories found matching 'moleculekit/test-data'
2024-03-27T09:03:33,491   no previously-included directories found matching 'moleculekit/tests'
2024-03-27T09:03:33,491   no previously-included directories found matching 'package'
2024-03-27T09:03:33,492   adding license file 'LICENSE'
2024-03-27T09:03:33,504   writing manifest file '/tmp/pip-modern-metadata-yymzubqp/moleculekit.egg-info/SOURCES.txt'
2024-03-27T09:03:33,511   creating '/tmp/pip-modern-metadata-yymzubqp/moleculekit-1.8.28.dist-info'
2024-03-27T09:03:33,773   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-27T09:03:33,778   Source in /tmp/pip-wheel-6kq4p0s3/moleculekit_68cd24780f2040709846fcbdb3f3a887 has version 1.8.28, which satisfies requirement moleculekit==1.8.28 from https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz
2024-03-27T09:03:33,779   Removed moleculekit==1.8.28 from https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz from build tracker '/tmp/pip-build-tracker-ydogqzmr'
2024-03-27T09:03:33,784 Created temporary directory: /tmp/pip-unpack-7u9dxb4i
2024-03-27T09:03:33,785 Created temporary directory: /tmp/pip-unpack-blpfsm_i
2024-03-27T09:03:33,793 Building wheels for collected packages: moleculekit
2024-03-27T09:03:33,797   Created temporary directory: /tmp/pip-wheel-yar1rkuy
2024-03-27T09:03:33,798   Destination directory: /tmp/pip-wheel-yar1rkuy
2024-03-27T09:03:33,801   Building wheel for moleculekit (pyproject.toml): started
2024-03-27T09:03:33,802   Running command Building wheel for moleculekit (pyproject.toml)
2024-03-27T09:03:36,051   running bdist_wheel
2024-03-27T09:03:36,065   running build
2024-03-27T09:03:36,066   running build_py
2024-03-27T09:03:36,072   creating build
2024-03-27T09:03:36,073   creating build/lib.linux-armv7l-cpython-311
2024-03-27T09:03:36,074   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,075   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,079   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,081   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,084   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,085   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,087   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,088   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,093   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,096   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,099   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,101   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,103   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,105   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,107   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,109   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,111   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,113   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,115   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,117   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,119   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,121   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:36,123   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T09:03:36,124   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T09:03:36,126   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T09:03:36,130   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T09:03:36,133   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-03-27T09:03:36,134   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-03-27T09:03:36,136   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T09:03:36,137   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T09:03:36,138   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T09:03:36,141   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T09:03:36,144   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T09:03:36,145   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T09:03:36,147   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T09:03:36,151   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,152   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,155   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,157   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,159   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,163   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,165   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T09:03:36,168   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T09:03:36,169   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T09:03:36,170   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T09:03:36,173   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T09:03:36,175   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T09:03:36,178   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,179   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,182   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,184   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,186   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,188   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,190   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,193   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,195   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,198   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,200   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,203   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,205   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,208   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,211   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,213   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T09:03:36,216   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,218   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,221   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,222   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,224   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,227   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,229   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,232   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,234   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,237   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,239   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,243   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,246   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,248   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,250   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T09:03:36,253   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-27T09:03:36,254   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-27T09:03:36,256   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-27T09:03:36,259   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T09:03:36,260   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T09:03:36,263   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T09:03:36,264   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T09:03:36,266   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T09:03:36,270   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T09:03:36,271   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T09:03:36,273   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T09:03:36,275   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T09:03:36,277   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T09:03:36,280   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T09:03:36,281   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T09:03:36,283   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T09:03:36,284   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T09:03:36,286   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T09:03:36,289   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-27T09:03:36,290   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-27T09:03:36,292   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-27T09:03:36,293   running egg_info
2024-03-27T09:03:36,298   writing moleculekit.egg-info/PKG-INFO
2024-03-27T09:03:36,301   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-27T09:03:36,302   writing requirements to moleculekit.egg-info/requires.txt
2024-03-27T09:03:36,303   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-27T09:03:36,320   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,321   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,322   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,322   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,323   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,323   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,324   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,325   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,325   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,326   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,327   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,327   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,328   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,328   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,329   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,329   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,330   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,330   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,331   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,331   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,332   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,333   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,333   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,334   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,334   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,335   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,336   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,336   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,337   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,337   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,338   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,338   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,339   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,339   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,340   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,340   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,341   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,342   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,342   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,343   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,343   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,344   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,344   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,345   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,345   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,346   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,347   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,347   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,348   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,348   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,349   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,349   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,350   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,350   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,351   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,351   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,352   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,352   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,353   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,354   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,354   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,355   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,355   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,356   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,356   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,357   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,357   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,358   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,358   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,359   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,359   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,360   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,360   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,361   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,361   dependency /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T09:03:36,362   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T09:03:36,362   reading manifest template 'MANIFEST.in'
2024-03-27T09:03:36,828   no previously-included directories found matching 'moleculekit/test-data'
2024-03-27T09:03:36,829   no previously-included directories found matching 'moleculekit/tests'
2024-03-27T09:03:36,831   no previously-included directories found matching 'package'
2024-03-27T09:03:36,831   adding license file 'LICENSE'
2024-03-27T09:03:36,846   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T09:03:36,855   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-03-27T09:03:36,856   !!

2024-03-27T09:03:36,857           ********************************************************************************
2024-03-27T09:03:36,858           ############################
2024-03-27T09:03:36,859           # Package would be ignored #
2024-03-27T09:03:36,859           ############################
2024-03-27T09:03:36,860           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-03-27T09:03:36,861           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,862           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,862           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-03-27T09:03:36,863           to the `packages` configuration field.

2024-03-27T09:03:36,865           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,865           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,866           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,867           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,867           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,868           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-03-27T09:03:36,868           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-03-27T09:03:36,869           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,869           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,869           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,870           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,871           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,872           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,873                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,873                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,873                 directory, all directories are treated like packages.
2024-03-27T09:03:36,874           ********************************************************************************

2024-03-27T09:03:36,875   !!
2024-03-27T09:03:36,875     check.warn(importable)
2024-03-27T09:03:36,876   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-03-27T09:03:36,877   !!

2024-03-27T09:03:36,878           ********************************************************************************
2024-03-27T09:03:36,879           ############################
2024-03-27T09:03:36,879           # Package would be ignored #
2024-03-27T09:03:36,880           ############################
2024-03-27T09:03:36,881           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-03-27T09:03:36,881           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,882           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,883           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-03-27T09:03:36,883           to the `packages` configuration field.

2024-03-27T09:03:36,884           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,885           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,885           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,886           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,887           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,888           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-03-27T09:03:36,888           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-03-27T09:03:36,889           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,889           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,890           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,892           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,893           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,894           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,894                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,895                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,895                 directory, all directories are treated like packages.
2024-03-27T09:03:36,895           ********************************************************************************

2024-03-27T09:03:36,896   !!
2024-03-27T09:03:36,897     check.warn(importable)
2024-03-27T09:03:36,897   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-03-27T09:03:36,897   !!

2024-03-27T09:03:36,898           ********************************************************************************
2024-03-27T09:03:36,899           ############################
2024-03-27T09:03:36,899           # Package would be ignored #
2024-03-27T09:03:36,900           ############################
2024-03-27T09:03:36,900           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-03-27T09:03:36,900           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,901           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,902           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-03-27T09:03:36,902           to the `packages` configuration field.

2024-03-27T09:03:36,903           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,903           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,904           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,905           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,906           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,907           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-03-27T09:03:36,908           already explicitly excluding 'moleculekit.cython_utils' via
2024-03-27T09:03:36,909           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,909           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,910           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,911           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,912           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,913           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,914                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,914                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,915                 directory, all directories are treated like packages.
2024-03-27T09:03:36,915           ********************************************************************************

2024-03-27T09:03:36,916   !!
2024-03-27T09:03:36,917     check.warn(importable)
2024-03-27T09:03:36,918   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-03-27T09:03:36,918   !!

2024-03-27T09:03:36,919           ********************************************************************************
2024-03-27T09:03:36,920           ############################
2024-03-27T09:03:36,920           # Package would be ignored #
2024-03-27T09:03:36,921           ############################
2024-03-27T09:03:36,922           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-03-27T09:03:36,922           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,923           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,923           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-03-27T09:03:36,924           to the `packages` configuration field.

2024-03-27T09:03:36,925           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,925           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,925           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,926           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,927           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,928           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-03-27T09:03:36,928           already explicitly excluding 'moleculekit.distance_utils' via
2024-03-27T09:03:36,928           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,929           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,929           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,930           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,931           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,932           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,933                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,933                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,934                 directory, all directories are treated like packages.
2024-03-27T09:03:36,934           ********************************************************************************

2024-03-27T09:03:36,935   !!
2024-03-27T09:03:36,936     check.warn(importable)
2024-03-27T09:03:36,936   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-03-27T09:03:36,937   !!

2024-03-27T09:03:36,938           ********************************************************************************
2024-03-27T09:03:36,939           ############################
2024-03-27T09:03:36,939           # Package would be ignored #
2024-03-27T09:03:36,940           ############################
2024-03-27T09:03:36,940           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-03-27T09:03:36,941           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,942           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,942           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-03-27T09:03:36,943           to the `packages` configuration field.

2024-03-27T09:03:36,944           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,945           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,945           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,946           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,948           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,949           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-03-27T09:03:36,949           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-03-27T09:03:36,950           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,950           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,951           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,952           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,952           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,953           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,954                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,954                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,955                 directory, all directories are treated like packages.
2024-03-27T09:03:36,955           ********************************************************************************

2024-03-27T09:03:36,956   !!
2024-03-27T09:03:36,957     check.warn(importable)
2024-03-27T09:03:36,957   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-03-27T09:03:36,957   !!

2024-03-27T09:03:36,958           ********************************************************************************
2024-03-27T09:03:36,959           ############################
2024-03-27T09:03:36,959           # Package would be ignored #
2024-03-27T09:03:36,960           ############################
2024-03-27T09:03:36,961           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-03-27T09:03:36,961           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,962           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,963           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-03-27T09:03:36,963           to the `packages` configuration field.

2024-03-27T09:03:36,965           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,965           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,966           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,967           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,968           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,969           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-03-27T09:03:36,970           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-03-27T09:03:36,970           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,971           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,971           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,972           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,973           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,975           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,975                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,976                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,976                 directory, all directories are treated like packages.
2024-03-27T09:03:36,977           ********************************************************************************

2024-03-27T09:03:36,978   !!
2024-03-27T09:03:36,979     check.warn(importable)
2024-03-27T09:03:36,979   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-03-27T09:03:36,980   !!

2024-03-27T09:03:36,981           ********************************************************************************
2024-03-27T09:03:36,981           ############################
2024-03-27T09:03:36,982           # Package would be ignored #
2024-03-27T09:03:36,982           ############################
2024-03-27T09:03:36,982           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-03-27T09:03:36,983           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:36,984           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:36,984           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-03-27T09:03:36,984           to the `packages` configuration field.

2024-03-27T09:03:36,985           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:36,985           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:36,986           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:36,987           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:36,988           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:36,989           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-03-27T09:03:36,989           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-03-27T09:03:36,990           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:36,990           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:36,991           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:36,992           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:36,993           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:36,995           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:36,996                 even if it does not contain any `.py` files.
2024-03-27T09:03:36,996                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:36,997                 directory, all directories are treated like packages.
2024-03-27T09:03:36,998           ********************************************************************************

2024-03-27T09:03:36,998   !!
2024-03-27T09:03:36,999     check.warn(importable)
2024-03-27T09:03:36,999   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-03-27T09:03:37,000   !!

2024-03-27T09:03:37,001           ********************************************************************************
2024-03-27T09:03:37,001           ############################
2024-03-27T09:03:37,002           # Package would be ignored #
2024-03-27T09:03:37,002           ############################
2024-03-27T09:03:37,003           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-03-27T09:03:37,004           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,005           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,005           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-03-27T09:03:37,006           to the `packages` configuration field.

2024-03-27T09:03:37,007           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,007           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,008           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,009           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,009           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,010           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-03-27T09:03:37,010           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-03-27T09:03:37,011           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,011           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,012           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,012           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,013           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,014           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,015                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,015                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,016                 directory, all directories are treated like packages.
2024-03-27T09:03:37,016           ********************************************************************************

2024-03-27T09:03:37,017   !!
2024-03-27T09:03:37,017     check.warn(importable)
2024-03-27T09:03:37,018   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-03-27T09:03:37,019   !!

2024-03-27T09:03:37,020           ********************************************************************************
2024-03-27T09:03:37,020           ############################
2024-03-27T09:03:37,021           # Package would be ignored #
2024-03-27T09:03:37,022           ############################
2024-03-27T09:03:37,022           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-03-27T09:03:37,023           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,024           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,024           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-03-27T09:03:37,025           to the `packages` configuration field.

2024-03-27T09:03:37,026           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,026           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,027           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,028           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,029           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,030           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-03-27T09:03:37,030           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-03-27T09:03:37,031           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,032           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,033           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,034           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,036           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,038           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,038                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,038                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,039                 directory, all directories are treated like packages.
2024-03-27T09:03:37,039           ********************************************************************************

2024-03-27T09:03:37,040   !!
2024-03-27T09:03:37,041     check.warn(importable)
2024-03-27T09:03:37,041   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-03-27T09:03:37,041   !!

2024-03-27T09:03:37,042           ********************************************************************************
2024-03-27T09:03:37,043           ############################
2024-03-27T09:03:37,043           # Package would be ignored #
2024-03-27T09:03:37,044           ############################
2024-03-27T09:03:37,044           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-03-27T09:03:37,045           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,046           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,046           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-03-27T09:03:37,047           to the `packages` configuration field.

2024-03-27T09:03:37,048           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,048           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,049           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,050           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,052           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,053           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-03-27T09:03:37,053           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-03-27T09:03:37,054           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,054           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,055           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,056           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,057           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,059           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,059                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,060                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,061                 directory, all directories are treated like packages.
2024-03-27T09:03:37,062           ********************************************************************************

2024-03-27T09:03:37,063   !!
2024-03-27T09:03:37,063     check.warn(importable)
2024-03-27T09:03:37,064   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-03-27T09:03:37,065   !!

2024-03-27T09:03:37,068           ********************************************************************************
2024-03-27T09:03:37,078           ############################
2024-03-27T09:03:37,087           # Package would be ignored #
2024-03-27T09:03:37,088           ############################
2024-03-27T09:03:37,089           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-03-27T09:03:37,090           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,091           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,091           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-03-27T09:03:37,092           to the `packages` configuration field.

2024-03-27T09:03:37,093           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,093           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,094           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,095           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,096           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,097           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-03-27T09:03:37,097           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-03-27T09:03:37,098           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,098           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,099           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,100           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,101           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,103           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,104                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,104                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,105                 directory, all directories are treated like packages.
2024-03-27T09:03:37,105           ********************************************************************************

2024-03-27T09:03:37,107   !!
2024-03-27T09:03:37,108     check.warn(importable)
2024-03-27T09:03:37,108   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-03-27T09:03:37,109   !!

2024-03-27T09:03:37,110           ********************************************************************************
2024-03-27T09:03:37,111           ############################
2024-03-27T09:03:37,112           # Package would be ignored #
2024-03-27T09:03:37,112           ############################
2024-03-27T09:03:37,113           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-03-27T09:03:37,113           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,115           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,115           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-03-27T09:03:37,116           to the `packages` configuration field.

2024-03-27T09:03:37,117           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,118           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,119           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,123           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,126           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,127           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-03-27T09:03:37,128           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-03-27T09:03:37,128           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,129           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,129           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,130           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,131           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,134           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,135                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,135                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,136                 directory, all directories are treated like packages.
2024-03-27T09:03:37,137           ********************************************************************************

2024-03-27T09:03:37,138   !!
2024-03-27T09:03:37,139     check.warn(importable)
2024-03-27T09:03:37,140   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-03-27T09:03:37,143   !!

2024-03-27T09:03:37,146           ********************************************************************************
2024-03-27T09:03:37,151           ############################
2024-03-27T09:03:37,157           # Package would be ignored #
2024-03-27T09:03:37,158           ############################
2024-03-27T09:03:37,159           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-03-27T09:03:37,159           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,160           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,161           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-03-27T09:03:37,161           to the `packages` configuration field.

2024-03-27T09:03:37,162           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,163           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,163           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,165           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,166           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,167           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-03-27T09:03:37,168           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-03-27T09:03:37,168           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,169           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,169           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,171           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,172           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,174           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,175                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,175                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,176                 directory, all directories are treated like packages.
2024-03-27T09:03:37,177           ********************************************************************************

2024-03-27T09:03:37,178   !!
2024-03-27T09:03:37,179     check.warn(importable)
2024-03-27T09:03:37,180   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-03-27T09:03:37,180   !!

2024-03-27T09:03:37,182           ********************************************************************************
2024-03-27T09:03:37,182           ############################
2024-03-27T09:03:37,183           # Package would be ignored #
2024-03-27T09:03:37,184           ############################
2024-03-27T09:03:37,184           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-03-27T09:03:37,185           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,186           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,187           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-03-27T09:03:37,187           to the `packages` configuration field.

2024-03-27T09:03:37,188           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,189           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,190           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,191           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,199           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,200           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-03-27T09:03:37,201           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-03-27T09:03:37,201           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,202           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,203           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,204           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,205           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,211           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,212                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,218                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,230                 directory, all directories are treated like packages.
2024-03-27T09:03:37,238           ********************************************************************************

2024-03-27T09:03:37,240   !!
2024-03-27T09:03:37,241     check.warn(importable)
2024-03-27T09:03:37,242   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-03-27T09:03:37,242   !!

2024-03-27T09:03:37,244           ********************************************************************************
2024-03-27T09:03:37,245           ############################
2024-03-27T09:03:37,246           # Package would be ignored #
2024-03-27T09:03:37,246           ############################
2024-03-27T09:03:37,247           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-03-27T09:03:37,248           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,250           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,251           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-03-27T09:03:37,252           to the `packages` configuration field.

2024-03-27T09:03:37,254           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,255           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,256           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,257           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,259           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,261           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-03-27T09:03:37,261           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-03-27T09:03:37,262           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,263           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,264           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,265           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,267           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,269           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,270                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,271                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,272                 directory, all directories are treated like packages.
2024-03-27T09:03:37,273           ********************************************************************************

2024-03-27T09:03:37,274   !!
2024-03-27T09:03:37,275     check.warn(importable)
2024-03-27T09:03:37,276   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-03-27T09:03:37,277   !!

2024-03-27T09:03:37,279           ********************************************************************************
2024-03-27T09:03:37,280           ############################
2024-03-27T09:03:37,280           # Package would be ignored #
2024-03-27T09:03:37,281           ############################
2024-03-27T09:03:37,282           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-03-27T09:03:37,283           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,285           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,286           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-03-27T09:03:37,287           to the `packages` configuration field.

2024-03-27T09:03:37,289           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,290           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,291           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,292           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,294           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,296           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-03-27T09:03:37,297           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-03-27T09:03:37,298           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,299           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,300           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,301           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,304           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,306           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,306                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,307                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,308                 directory, all directories are treated like packages.
2024-03-27T09:03:37,309           ********************************************************************************

2024-03-27T09:03:37,310   !!
2024-03-27T09:03:37,311     check.warn(importable)
2024-03-27T09:03:37,312   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-03-27T09:03:37,313   !!

2024-03-27T09:03:37,314           ********************************************************************************
2024-03-27T09:03:37,314           ############################
2024-03-27T09:03:37,315           # Package would be ignored #
2024-03-27T09:03:37,316           ############################
2024-03-27T09:03:37,316           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-03-27T09:03:37,317           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,318           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,319           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-03-27T09:03:37,319           to the `packages` configuration field.

2024-03-27T09:03:37,320           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,321           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,322           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,323           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,325           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,326           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-03-27T09:03:37,327           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-03-27T09:03:37,327           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,328           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,328           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,330           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,331           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,333           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,333                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,334                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,334                 directory, all directories are treated like packages.
2024-03-27T09:03:37,335           ********************************************************************************

2024-03-27T09:03:37,344   !!
2024-03-27T09:03:37,363     check.warn(importable)
2024-03-27T09:03:37,397   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-03-27T09:03:37,429   !!

2024-03-27T09:03:37,534           ********************************************************************************
2024-03-27T09:03:37,565           ############################
2024-03-27T09:03:37,596           # Package would be ignored #
2024-03-27T09:03:37,629           ############################
2024-03-27T09:03:37,630           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-03-27T09:03:37,630           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,631           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,632           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-03-27T09:03:37,632           to the `packages` configuration field.

2024-03-27T09:03:37,633           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,634           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,634           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,636           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,637           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,638           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-03-27T09:03:37,638           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-03-27T09:03:37,639           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,639           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,640           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,642           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,643           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,645           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,645                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,646                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,646                 directory, all directories are treated like packages.
2024-03-27T09:03:37,647           ********************************************************************************

2024-03-27T09:03:37,648   !!
2024-03-27T09:03:37,649     check.warn(importable)
2024-03-27T09:03:37,649   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-03-27T09:03:37,650   !!

2024-03-27T09:03:37,651           ********************************************************************************
2024-03-27T09:03:37,651           ############################
2024-03-27T09:03:37,652           # Package would be ignored #
2024-03-27T09:03:37,653           ############################
2024-03-27T09:03:37,653           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-03-27T09:03:37,654           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,655           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,655           package, please make sure that 'moleculekit.share' is explicitly added
2024-03-27T09:03:37,656           to the `packages` configuration field.

2024-03-27T09:03:37,657           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,658           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,658           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,659           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,660           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,661           If you don't want 'moleculekit.share' to be distributed and are
2024-03-27T09:03:37,662           already explicitly excluding 'moleculekit.share' via
2024-03-27T09:03:37,663           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,663           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,664           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,665           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,666           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,667           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,668                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,669                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,669                 directory, all directories are treated like packages.
2024-03-27T09:03:37,670           ********************************************************************************

2024-03-27T09:03:37,671   !!
2024-03-27T09:03:37,672     check.warn(importable)
2024-03-27T09:03:37,672   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-03-27T09:03:37,673   !!

2024-03-27T09:03:37,674           ********************************************************************************
2024-03-27T09:03:37,675           ############################
2024-03-27T09:03:37,676           # Package would be ignored #
2024-03-27T09:03:37,677           ############################
2024-03-27T09:03:37,677           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-03-27T09:03:37,678           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,680           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,681           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-03-27T09:03:37,681           to the `packages` configuration field.

2024-03-27T09:03:37,682           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,683           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,683           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,685           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,686           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,687           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-03-27T09:03:37,688           already explicitly excluding 'moleculekit.share.atomselect' via
2024-03-27T09:03:37,688           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,689           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,690           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,692           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,694           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,696           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,697                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,698                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,699                 directory, all directories are treated like packages.
2024-03-27T09:03:37,700           ********************************************************************************

2024-03-27T09:03:37,702   !!
2024-03-27T09:03:37,703     check.warn(importable)
2024-03-27T09:03:37,704   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-03-27T09:03:37,704   !!

2024-03-27T09:03:37,705           ********************************************************************************
2024-03-27T09:03:37,706           ############################
2024-03-27T09:03:37,706           # Package would be ignored #
2024-03-27T09:03:37,707           ############################
2024-03-27T09:03:37,707           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-03-27T09:03:37,708           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,708           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,709           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-03-27T09:03:37,709           to the `packages` configuration field.

2024-03-27T09:03:37,710           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,711           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,711           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,712           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,713           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,714           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-03-27T09:03:37,715           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-03-27T09:03:37,715           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,716           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,716           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,717           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,718           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,720           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,721                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,722                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,723                 directory, all directories are treated like packages.
2024-03-27T09:03:37,724           ********************************************************************************

2024-03-27T09:03:37,726   !!
2024-03-27T09:03:37,727     check.warn(importable)
2024-03-27T09:03:37,728   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-03-27T09:03:37,729   !!

2024-03-27T09:03:37,811           ********************************************************************************
2024-03-27T09:03:37,812           ############################
2024-03-27T09:03:37,812           # Package would be ignored #
2024-03-27T09:03:37,813           ############################
2024-03-27T09:03:37,813           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-03-27T09:03:37,814           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,815           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,816           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-03-27T09:03:37,816           to the `packages` configuration field.

2024-03-27T09:03:37,818           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,818           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,819           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,820           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,821           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,822           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-03-27T09:03:37,823           already explicitly excluding 'moleculekit.tmalign' via
2024-03-27T09:03:37,823           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,824           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,824           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,825           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,826           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,828           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,829                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,830                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,830                 directory, all directories are treated like packages.
2024-03-27T09:03:37,831           ********************************************************************************

2024-03-27T09:03:37,832   !!
2024-03-27T09:03:37,832     check.warn(importable)
2024-03-27T09:03:37,833   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-03-27T09:03:37,834   !!

2024-03-27T09:03:37,835           ********************************************************************************
2024-03-27T09:03:37,835           ############################
2024-03-27T09:03:37,836           # Package would be ignored #
2024-03-27T09:03:37,837           ############################
2024-03-27T09:03:37,837           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-03-27T09:03:37,838           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,839           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,840           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-03-27T09:03:37,840           to the `packages` configuration field.

2024-03-27T09:03:37,841           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,842           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,842           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,844           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,845           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,846           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-03-27T09:03:37,846           already explicitly excluding 'moleculekit.tmalign.include' via
2024-03-27T09:03:37,847           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,848           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,848           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,849           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,851           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,852           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,853                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,854                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,855                 directory, all directories are treated like packages.
2024-03-27T09:03:37,855           ********************************************************************************

2024-03-27T09:03:37,856   !!
2024-03-27T09:03:37,857     check.warn(importable)
2024-03-27T09:03:37,857   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-03-27T09:03:37,857   !!

2024-03-27T09:03:37,859           ********************************************************************************
2024-03-27T09:03:37,859           ############################
2024-03-27T09:03:37,860           # Package would be ignored #
2024-03-27T09:03:37,860           ############################
2024-03-27T09:03:37,861           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-03-27T09:03:37,861           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,862           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,863           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-03-27T09:03:37,863           to the `packages` configuration field.

2024-03-27T09:03:37,864           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,864           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,865           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,866           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,867           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,868           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-03-27T09:03:37,869           already explicitly excluding 'moleculekit.tmalign.src' via
2024-03-27T09:03:37,869           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,870           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,870           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,871           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,872           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,874           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,875                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,875                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,876                 directory, all directories are treated like packages.
2024-03-27T09:03:37,876           ********************************************************************************

2024-03-27T09:03:37,877   !!
2024-03-27T09:03:37,878     check.warn(importable)
2024-03-27T09:03:37,878   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-03-27T09:03:37,879   !!

2024-03-27T09:03:37,880           ********************************************************************************
2024-03-27T09:03:37,881           ############################
2024-03-27T09:03:37,882           # Package would be ignored #
2024-03-27T09:03:37,882           ############################
2024-03-27T09:03:37,883           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-03-27T09:03:37,883           but it is absent from setuptools' `packages` configuration.

2024-03-27T09:03:37,885           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T09:03:37,885           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-03-27T09:03:37,886           to the `packages` configuration field.

2024-03-27T09:03:37,887           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T09:03:37,887           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T09:03:37,888           instead of `find_packages(...)`/`find:`).

2024-03-27T09:03:37,889           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T09:03:37,890           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T09:03:37,891           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-03-27T09:03:37,891           already explicitly excluding 'moleculekit.wrapping' via
2024-03-27T09:03:37,892           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T09:03:37,892           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T09:03:37,893           combination with a more fine grained `package-data` configuration.

2024-03-27T09:03:37,894           You can read more about "package data files" on setuptools documentation page:

2024-03-27T09:03:37,895           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T09:03:37,897           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T09:03:37,897                 even if it does not contain any `.py` files.
2024-03-27T09:03:37,898                 On the other hand, currently there is no concept of package data
2024-03-27T09:03:37,898                 directory, all directories are treated like packages.
2024-03-27T09:03:37,899           ********************************************************************************

2024-03-27T09:03:37,900   !!
2024-03-27T09:03:37,901     check.warn(importable)
2024-03-27T09:03:37,901   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:37,902   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:37,902   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T09:03:37,903   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T09:03:37,903   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T09:03:37,904   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T09:03:37,904   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T09:03:37,905   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T09:03:37,906   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T09:03:37,906   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T09:03:37,907   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T09:03:37,907   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T09:03:37,908   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T09:03:37,909   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T09:03:37,909   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T09:03:37,910   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T09:03:37,910   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T09:03:37,911   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T09:03:37,912   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T09:03:37,912   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T09:03:37,913   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T09:03:37,913   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-03-27T09:03:37,914   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-03-27T09:03:37,914   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-03-27T09:03:37,915   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,916   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,916   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,917   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,918   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,918   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,919   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,919   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,920   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,920   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,921   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,921   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,922   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,922   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,923   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,923   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,924   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,924   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,925   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,926   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,926   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,927   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,927   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,928   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,928   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,929   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,929   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,930   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,930   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,931   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,931   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,932   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,932   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,933   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,933   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,933   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,934   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,934   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,935   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,935   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,936   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,936   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,937   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,937   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,938   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,938   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,939   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,939   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,940   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,941   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,941   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,942   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,942   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,943   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,943   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,944   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,944   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,945   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,945   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,946   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,946   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,947   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,947   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,948   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,948   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,949   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,949   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,950   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,950   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,951   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,951   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,952   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,953   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,953   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,954   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,954   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,955   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,956   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,956   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,956   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,957   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,958   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,958   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,959   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,959   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,960   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,960   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,960   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,961   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,961   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,962   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,963   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,963   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,965   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,967   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,969   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,972   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,973   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,975   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,977   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,979   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,981   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,983   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,985   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,988   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,990   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,992   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,993   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,995   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,997   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:37,999   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,001   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,003   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,005   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,007   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,009   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,011   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,013   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,015   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,017   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,019   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,022   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,024   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,027   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,030   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,033   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,036   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,038   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,041   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,044   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,046   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,049   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,051   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,054   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,056   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,058   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,061   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,063   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,066   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,068   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,071   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,074   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,076   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,079   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,081   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,083   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,086   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,088   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,091   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,093   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,096   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,098   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,101   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,103   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,106   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,108   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,111   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,114   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,117   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,119   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,122   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,124   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,126   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,128   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,130   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,133   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,135   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,138   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,141   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,143   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,145   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,148   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,150   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,152   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,155   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,157   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T09:03:38,159   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T09:03:38,160   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T09:03:38,186   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T09:03:38,188   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T09:03:38,190   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-03-27T09:03:38,191   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-03-27T09:03:38,193   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-27T09:03:38,194   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-27T09:03:38,201   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T09:03:38,202   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T09:03:38,224   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T09:03:38,226   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T09:03:38,227   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T09:03:38,241   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T09:03:38,244   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T09:03:38,245   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T09:03:38,246   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T09:03:38,249   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T09:03:38,251   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T09:03:38,254   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-27T09:03:38,255   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-27T09:03:38,258   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T09:03:38,258   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T09:03:38,277   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T09:03:38,280   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T09:03:38,282   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T09:03:38,283   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T09:03:38,285   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T09:03:38,287   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T09:03:38,289   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T09:03:38,291   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T09:03:38,294   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-27T09:03:38,295   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-27T09:03:38,298   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,298   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,329   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,332   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,334   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,336   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,366   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,368   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:03:38,370   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,371   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,374   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,376   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,379   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,381   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,384   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T09:03:38,387   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:03:38,387   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:03:38,390   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:03:38,395   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:03:38,398   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:03:38,401   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:03:38,404   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T09:03:38,405   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T09:03:38,444   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T09:03:38,447   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T09:03:38,448   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T09:03:38,520   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T09:03:38,523   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T09:03:38,524   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T09:03:38,605   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T09:03:38,608   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T09:03:38,609   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T09:03:38,642   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T09:03:38,654   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-03-27T09:03:38,655   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.28'
2024-03-27T09:03:38,656   running build_ext
2024-03-27T09:03:38,665   building 'moleculekit.interactions.hbonds' extension
2024-03-27T09:03:38,665   creating build/temp.linux-armv7l-cpython-311
2024-03-27T09:03:38,666   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-03-27T09:03:38,667   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T09:03:38,668   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T09:03:38,669   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-03-27T09:03:39,074   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:03:39,075                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:03:39,075                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:03:39,076                    from moleculekit/interactions/hbonds/hbonds.cpp:1235:
2024-03-27T09:03:39,076   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:03:39,077      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:03:39,077         |  ^~~~~~~
2024-03-27T09:04:06,653   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-03-27T09:04:06,653       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19959:68:
2024-03-27T09:04:06,654   moleculekit/interactions/hbonds/hbonds.cpp:20989:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:04:06,655   20989 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-03-27T09:04:06,655         |                                                    ^~~~~~~~~~~~~~~
2024-03-27T09:04:06,656   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-27T09:04:06,657   moleculekit/interactions/hbonds/hbonds.cpp:20002:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-03-27T09:04:06,658   20002 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-03-27T09:04:06,659         |                                                         ^~~~~~~~~~~~~~~
2024-03-27T09:04:10,105   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:04:10,415   building 'moleculekit.interactions.pipi' extension
2024-03-27T09:04:10,415   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T09:04:10,416   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-03-27T09:04:10,751   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:04:10,752                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:04:10,752                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:04:10,753                    from moleculekit/interactions/pipi/pipi.cpp:1235:
2024-03-27T09:04:10,754   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:04:10,754      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:04:10,755         |  ^~~~~~~
2024-03-27T09:04:43,967   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:04:44,267   building 'moleculekit.interactions.cationpi' extension
2024-03-27T09:04:44,268   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T09:04:44,268   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-03-27T09:04:44,815   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:04:44,815                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:04:44,816                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:04:44,817                    from moleculekit/interactions/cationpi/cationpi.cpp:1235:
2024-03-27T09:04:44,817   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:04:44,818      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:04:44,819         |  ^~~~~~~
2024-03-27T09:05:17,359   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:05:17,698   building 'moleculekit.interactions.sigmahole' extension
2024-03-27T09:05:17,699   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T09:05:17,700   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-03-27T09:05:18,071   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:05:18,072                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:05:18,073                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:05:18,074                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1235:
2024-03-27T09:05:18,074   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:05:18,075      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:05:18,075         |  ^~~~~~~
2024-03-27T09:05:50,268   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:05:50,561   building 'moleculekit.wrapping' extension
2024-03-27T09:05:50,562   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T09:05:50,563   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-03-27T09:05:50,886   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:05:50,886                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:05:50,887                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:05:50,888                    from moleculekit/wrapping/wrapping.cpp:1235:
2024-03-27T09:05:50,888   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:05:50,889      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:05:50,889         |  ^~~~~~~
2024-03-27T09:06:21,311   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:06:21,509   building 'moleculekit.bondguesser_utils' extension
2024-03-27T09:06:21,510   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T09:06:21,511   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-03-27T09:06:21,845   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:06:21,846                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:06:21,846                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:06:21,847                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1235:
2024-03-27T09:06:21,848   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:06:21,848      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:06:21,850         |  ^~~~~~~
2024-03-27T09:06:24,208   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-03-27T09:06:24,209   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-27T09:06:24,209   19771 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-27T09:06:24,210         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T09:06:24,210   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-27T09:06:24,211   19783 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-27T09:06:24,212         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T09:06:24,212   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-27T09:06:24,213   19795 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-03-27T09:06:24,213         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T09:06:24,214   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19834:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,214   19834 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T09:06:24,215         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,216   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19873:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,216   19873 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T09:06:24,217         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,218   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19912:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,218   19912 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,219         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,220   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,221   19951 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T09:06:24,221         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,222   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19957:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,223   19957 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T09:06:24,223         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,224   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19998:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,225   19998 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T09:06:24,226         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,226   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20004:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,226   20004 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,227         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,227   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20045:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,228   20045 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T09:06:24,229         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,229   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20051:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,230   20051 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,230         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,231   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20092:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,232   20092 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T09:06:24,232         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,234   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20145:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,234   20145 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,235         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,236   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20192:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,237   20192 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,237         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,238   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,239   20233 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T09:06:24,239         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,240   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20239:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,240   20239 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T09:06:24,241         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,242   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,243   20245 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,243         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,244   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20292:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,245   20292 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T09:06:24,245         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,246   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20298:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,247   20298 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,247         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,248   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,249   20339 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T09:06:24,249         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,250   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,250   20351 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,251         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,252   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20404:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T09:06:24,252   20404 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T09:06:24,253         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,278   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-03-27T09:06:24,279   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21026:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:06:24,280   21026 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-03-27T09:06:24,281         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-03-27T09:06:24,281   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21063:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:06:24,282   21063 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-03-27T09:06:24,282         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-27T09:06:51,275   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:06:51,553   building 'moleculekit.atomselect_utils' extension
2024-03-27T09:06:51,554   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T09:06:51,554   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-03-27T09:06:51,876   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:06:51,877                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:06:51,878                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:06:51,879                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1252:
2024-03-27T09:06:51,879   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:06:51,880      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:06:51,880         |  ^~~~~~~
2024-03-27T09:06:54,407   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-03-27T09:06:54,408   moleculekit/atomselect_utils/atomselect_utils.cpp:23225:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:06:54,408   23225 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-03-27T09:06:54,409         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-27T09:06:54,415   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-27T09:06:54,415   moleculekit/atomselect_utils/atomselect_utils.cpp:23477:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:06:54,416   23477 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-27T09:06:54,417         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T09:06:54,423   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-27T09:06:54,423   moleculekit/atomselect_utils/atomselect_utils.cpp:23744:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:06:54,424   23744 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-27T09:06:54,425         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T09:07:29,013   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:07:29,362   building 'moleculekit.distance_utils' extension
2024-03-27T09:07:29,363   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T09:07:29,363   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-03-27T09:07:29,680   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:07:29,681                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:07:29,681                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:07:29,682                    from moleculekit/distance_utils/distance_utils.cpp:1235:
2024-03-27T09:07:29,683   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:07:29,683      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:07:29,684         |  ^~~~~~~
2024-03-27T09:07:32,579   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-03-27T09:07:32,580   moleculekit/distance_utils/distance_utils.cpp:21329:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:07:32,581   21329 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-27T09:07:32,581         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T09:07:32,582   moleculekit/distance_utils/distance_utils.cpp:21341:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T09:07:32,583   21341 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-27T09:07:32,584         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T09:08:10,429   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:08:10,741   building 'moleculekit.occupancy_utils' extension
2024-03-27T09:08:10,742   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T09:08:10,743   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-03-27T09:08:11,087   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:08:11,088                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:08:11,089                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:08:11,090                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1235:
2024-03-27T09:08:11,090   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:08:11,091      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:08:11,091         |  ^~~~~~~
2024-03-27T09:08:38,675   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:08:39,148   building 'moleculekit.cython_utils' extension
2024-03-27T09:08:39,148   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T09:08:39,149   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-03-27T09:08:39,503   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:08:39,504                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:08:39,504                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:08:39,505                    from moleculekit/cython_utils/cython_utils.cpp:1235:
2024-03-27T09:08:39,506   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:08:39,506      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:08:39,507         |  ^~~~~~~
2024-03-27T09:09:09,702   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:09:10,019   building 'moleculekit.xtc' extension
2024-03-27T09:09:10,020   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T09:09:10,020   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T09:09:10,021   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T09:09:10,023   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-27T09:09:10,699   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,700      66 |         "OK",
2024-03-27T09:09:10,701         |         ^~~~
2024-03-27T09:09:10,702   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,702      67 |         "Header",
2024-03-27T09:09:10,703         |         ^~~~~~~~
2024-03-27T09:09:10,704   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,704      68 |         "String",
2024-03-27T09:09:10,705         |         ^~~~~~~~
2024-03-27T09:09:10,705   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,706      69 |         "Double",
2024-03-27T09:09:10,707         |         ^~~~~~~~
2024-03-27T09:09:10,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,708      70 |         "Integer",
2024-03-27T09:09:10,709         |         ^~~~~~~~~
2024-03-27T09:09:10,709   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,710      71 |         "Float",
2024-03-27T09:09:10,711         |         ^~~~~~~
2024-03-27T09:09:10,711   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,712      72 |         "Unsigned integer",
2024-03-27T09:09:10,713         |         ^~~~~~~~~~~~~~~~~~
2024-03-27T09:09:10,713   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,714      73 |         "Compressed 3D coordinate",
2024-03-27T09:09:10,715         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:10,715   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,716      74 |         "Closing file",
2024-03-27T09:09:10,717         |         ^~~~~~~~~~~~~~
2024-03-27T09:09:10,717   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,718      75 |         "Magic number",
2024-03-27T09:09:10,719         |         ^~~~~~~~~~~~~~
2024-03-27T09:09:10,719   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,720      76 |         "Not enough memory",
2024-03-27T09:09:10,721         |         ^~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:10,721   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,722      77 |         "End of file",
2024-03-27T09:09:10,723         |         ^~~~~~~~~~~~~
2024-03-27T09:09:10,723   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:10,724      78 |         "File not found"
2024-03-27T09:09:10,725         |         ^~~~~~~~~~~~~~~~
2024-03-27T09:09:10,726   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-27T09:09:10,726   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,727     459 |     while (size >= num && num_of_bits < 32)
2024-03-27T09:09:10,728         |            ~~~~~^~~~~~
2024-03-27T09:09:10,729   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-27T09:09:10,729   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,730     505 |     while (bytes[num_of_bytes] >= num)
2024-03-27T09:09:10,731         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T09:09:10,732   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-27T09:09:10,732   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,733     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-27T09:09:10,734         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:10,735   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,735     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-03-27T09:09:10,736         |                             ~~^~~~~~~~~~~~~~
2024-03-27T09:09:10,736   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,737     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-03-27T09:09:10,738         |                             ~~^~~~~~~~~~~~~~~~
2024-03-27T09:09:10,738   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-27T09:09:10,739   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,740     664 |                 if (lastbits < num_of_bits)
2024-03-27T09:09:10,740         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-03-27T09:09:10,741   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-27T09:09:10,741   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,742     785 |         if(size3>xfp->buf1size)
2024-03-27T09:09:10,743         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:10,743   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,744     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:10,744         |                          ^
2024-03-27T09:09:10,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,746     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:10,746         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:10,747   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,748     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:10,748         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:10,749   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,750     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:10,750         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:10,751   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,752     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:10,753         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:10,754   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,754     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:10,755         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:10,755   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,756     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:10,756         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:10,757   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:10,758     756 |         int smallidx,  minidx, maxidx;
2024-03-27T09:09:10,758         |                        ^~~~~~
2024-03-27T09:09:10,759   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:10,759     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T09:09:10,760         |                                ^~~~~~
2024-03-27T09:09:10,760   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T09:09:10,761     763 |         int errval=1;
2024-03-27T09:09:10,761         |             ^~~~~~
2024-03-27T09:09:10,762   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-27T09:09:10,763   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,764    1011 |         if(size3>xfp->buf1size)
2024-03-27T09:09:10,764         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:10,765   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,766    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T09:09:10,766         |                                 ~~~~~~~~^~~~~~~
2024-03-27T09:09:10,767   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,768    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T09:09:10,768         |                           ~~~~~~~~^~~~~~~
2024-03-27T09:09:10,769   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,770    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T09:09:10,771         |                           ~~~~~~~~^~~~~~~
2024-03-27T09:09:10,771   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,772    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-27T09:09:10,773         |                         ^
2024-03-27T09:09:10,773   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,774    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:10,775         |                          ^
2024-03-27T09:09:10,776   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,777    1275 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T09:09:10,778         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:10,778   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:10,779    1001 |         int errval;
2024-03-27T09:09:10,779         |             ^~~~~~
2024-03-27T09:09:10,780   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-27T09:09:10,780   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,781    1316 |         if(size3>xfp->buf1size)
2024-03-27T09:09:10,781         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:10,782   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,782    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:10,783         |                          ^
2024-03-27T09:09:10,784   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:10,784    1289 |         int smallidx,  maxidx, minidx;
2024-03-27T09:09:10,785         |                                ^~~~~~
2024-03-27T09:09:10,785   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:10,786    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T09:09:10,786         |                                ^~~~~~
2024-03-27T09:09:10,787   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T09:09:10,788    1297 |         int errval=1;
2024-03-27T09:09:10,788         |             ^~~~~~
2024-03-27T09:09:10,789   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-27T09:09:10,790   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,791    1513 |         if(size3>xfp->buf1size) {
2024-03-27T09:09:10,791         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:10,792   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,793    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-27T09:09:10,793         |                         ^
2024-03-27T09:09:10,794   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:10,795    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:10,795         |                          ^
2024-03-27T09:09:10,797   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:10,798    1743 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T09:09:10,798         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:10,799   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:10,800    1504 |         int errval=1;
2024-03-27T09:09:10,800         |             ^~~~~~
2024-03-27T09:09:13,670   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-03-27T09:09:13,943   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-03-27T09:09:14,742   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-03-27T09:09:14,743   moleculekit/fileformats/xtc/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:14,743     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-03-27T09:09:14,744         |                                ~~~~~^~~~~~~~
2024-03-27T09:09:14,756   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-03-27T09:09:14,756   moleculekit/fileformats/xtc/src/xtc.cpp:546:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:14,757     546 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-03-27T09:09:14,758         |                                        ~~~~~^~~~~~~~
2024-03-27T09:09:14,760   moleculekit/fileformats/xtc/src/xtc.cpp:615:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:14,761     615 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-03-27T09:09:14,762         |                                        ~~~~~^~~~~~~~
2024-03-27T09:09:15,756   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-03-27T09:09:16,099   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:09:16,100                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:09:16,100                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:09:16,101                    from moleculekit/fileformats/xtc/xtc.cpp:1239:
2024-03-27T09:09:16,102   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:09:16,102      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:09:16,103         |  ^~~~~~~
2024-03-27T09:09:40,404   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:09:40,736   building 'moleculekit.trr' extension
2024-03-27T09:09:40,737   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-03-27T09:09:40,888   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-27T09:09:41,522   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,523      66 |         "OK",
2024-03-27T09:09:41,524         |         ^~~~
2024-03-27T09:09:41,525   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,525      67 |         "Header",
2024-03-27T09:09:41,526         |         ^~~~~~~~
2024-03-27T09:09:41,527   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,527      68 |         "String",
2024-03-27T09:09:41,528         |         ^~~~~~~~
2024-03-27T09:09:41,529   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,530      69 |         "Double",
2024-03-27T09:09:41,530         |         ^~~~~~~~
2024-03-27T09:09:41,531   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,532      70 |         "Integer",
2024-03-27T09:09:41,533         |         ^~~~~~~~~
2024-03-27T09:09:41,533   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,534      71 |         "Float",
2024-03-27T09:09:41,535         |         ^~~~~~~
2024-03-27T09:09:41,536   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,536      72 |         "Unsigned integer",
2024-03-27T09:09:41,537         |         ^~~~~~~~~~~~~~~~~~
2024-03-27T09:09:41,537   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,538      73 |         "Compressed 3D coordinate",
2024-03-27T09:09:41,539         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:41,540   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,541      74 |         "Closing file",
2024-03-27T09:09:41,542         |         ^~~~~~~~~~~~~~
2024-03-27T09:09:41,543   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,543      75 |         "Magic number",
2024-03-27T09:09:41,544         |         ^~~~~~~~~~~~~~
2024-03-27T09:09:41,545   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,546      76 |         "Not enough memory",
2024-03-27T09:09:41,546         |         ^~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:41,547   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,548      77 |         "End of file",
2024-03-27T09:09:41,548         |         ^~~~~~~~~~~~~
2024-03-27T09:09:41,549   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T09:09:41,549      78 |         "File not found"
2024-03-27T09:09:41,550         |         ^~~~~~~~~~~~~~~~
2024-03-27T09:09:41,550   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-27T09:09:41,551   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,552     459 |     while (size >= num && num_of_bits < 32)
2024-03-27T09:09:41,552         |            ~~~~~^~~~~~
2024-03-27T09:09:41,553   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-27T09:09:41,554   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,555     505 |     while (bytes[num_of_bytes] >= num)
2024-03-27T09:09:41,556         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T09:09:41,557   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-27T09:09:41,558   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,601     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-27T09:09:41,602         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:41,603   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,604     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-03-27T09:09:41,605         |                             ~~^~~~~~~~~~~~~~
2024-03-27T09:09:41,605   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,606     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-03-27T09:09:41,607         |                             ~~^~~~~~~~~~~~~~~~
2024-03-27T09:09:41,608   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-27T09:09:41,608   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,609     664 |                 if (lastbits < num_of_bits)
2024-03-27T09:09:41,610         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-03-27T09:09:41,611   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-27T09:09:41,612   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,612     785 |         if(size3>xfp->buf1size)
2024-03-27T09:09:41,613         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:41,614   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,615     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:41,616         |                          ^
2024-03-27T09:09:41,616   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,617     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:41,617         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:41,618   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,619     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:41,619         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:41,620   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,620     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:41,621         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:41,622   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,622     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:41,623         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:41,624   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,624     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:41,625         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:41,626   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,626     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T09:09:41,627         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T09:09:41,628   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:41,629     756 |         int smallidx,  minidx, maxidx;
2024-03-27T09:09:41,629         |                        ^~~~~~
2024-03-27T09:09:41,630   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:41,631     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T09:09:41,632         |                                ^~~~~~
2024-03-27T09:09:41,632   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T09:09:41,633     763 |         int errval=1;
2024-03-27T09:09:41,634         |             ^~~~~~
2024-03-27T09:09:41,635   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-27T09:09:41,635   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,636    1011 |         if(size3>xfp->buf1size)
2024-03-27T09:09:41,637         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:41,638   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,638    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T09:09:41,639         |                                 ~~~~~~~~^~~~~~~
2024-03-27T09:09:41,640   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,640    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T09:09:41,641         |                           ~~~~~~~~^~~~~~~
2024-03-27T09:09:41,642   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,642    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T09:09:41,643         |                           ~~~~~~~~^~~~~~~
2024-03-27T09:09:41,643   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,644    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-27T09:09:41,645         |                         ^
2024-03-27T09:09:41,646   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,646    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:41,647         |                          ^
2024-03-27T09:09:41,648   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,648    1275 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T09:09:41,649         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:41,650   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:41,650    1001 |         int errval;
2024-03-27T09:09:41,651         |             ^~~~~~
2024-03-27T09:09:41,651   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-27T09:09:41,652   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,653    1316 |         if(size3>xfp->buf1size)
2024-03-27T09:09:41,654         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:41,654   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,655    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:41,656         |                          ^
2024-03-27T09:09:41,656   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:41,657    1289 |         int smallidx,  maxidx, minidx;
2024-03-27T09:09:41,658         |                                ^~~~~~
2024-03-27T09:09:41,659   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:41,659    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T09:09:41,660         |                                ^~~~~~
2024-03-27T09:09:41,661   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T09:09:41,661    1297 |         int errval=1;
2024-03-27T09:09:41,662         |             ^~~~~~
2024-03-27T09:09:41,663   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-27T09:09:41,664   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,665    1513 |         if(size3>xfp->buf1size) {
2024-03-27T09:09:41,665         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T09:09:41,666   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,666    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-27T09:09:41,667         |                         ^
2024-03-27T09:09:41,667   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:09:41,668    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T09:09:41,669         |                          ^
2024-03-27T09:09:41,669   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:09:41,670    1743 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T09:09:41,670         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:09:41,671   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T09:09:41,671    1504 |         int errval=1;
2024-03-27T09:09:41,672         |             ^~~~~~
2024-03-27T09:09:44,513   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-03-27T09:09:44,845   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-03-27T09:09:44,846   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-27T09:09:44,846     111 |         if (slen != strlen(version)+1)
2024-03-27T09:09:44,847         |                  ^~
2024-03-27T09:09:44,848   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-27T09:09:44,849     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-03-27T09:09:44,851         |                                              ^~
2024-03-27T09:09:45,584   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-03-27T09:09:46,139   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:09:46,140                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:09:46,141                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:09:46,141                    from moleculekit/fileformats/xtc/trr.c:1231:
2024-03-27T09:09:46,142   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:09:46,143      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:09:46,143         |  ^~~~~~~
2024-03-27T09:09:46,925   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-03-27T09:09:46,940   moleculekit/fileformats/xtc/trr.c:16322:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-27T09:09:46,941   16322 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-03-27T09:09:46,941         |                                     ^~
2024-03-27T09:10:10,377   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-03-27T09:10:10,377   moleculekit/fileformats/xtc/trr.c:1133:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:10,378    1133 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-27T09:10:10,378         |                                        ^~~~~~~~~~~~~~~
2024-03-27T09:10:10,391   moleculekit/fileformats/xtc/trr.c:14230:7: note: ‘__pyx_v_status’ was declared here
2024-03-27T09:10:10,392   14230 |   int __pyx_v_status;
2024-03-27T09:10:10,393         |       ^~~~~~~~~~~~~~
2024-03-27T09:10:22,063   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-03-27T09:10:22,075   moleculekit/fileformats/xtc/trr.c:11529:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,075   11529 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-27T09:10:22,076         |                   ^
2024-03-27T09:10:22,085   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-03-27T09:10:22,085   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T09:10:22,086         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,095   moleculekit/fileformats/xtc/trr.c:11525:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,096   11525 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T09:10:22,097         |                   ^
2024-03-27T09:10:22,105   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-03-27T09:10:22,106   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T09:10:22,106         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,107   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,108    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-27T09:10:22,108         |                                                                                               ^
2024-03-27T09:10:22,117   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-03-27T09:10:22,117   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T09:10:22,118         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,127   moleculekit/fileformats/xtc/trr.c:11519:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,128   11519 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-03-27T09:10:22,129         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T09:10:22,137   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-03-27T09:10:22,138   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T09:10:22,138         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,148   moleculekit/fileformats/xtc/trr.c:11472:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,148   11472 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-27T09:10:22,149         |                   ^
2024-03-27T09:10:22,157   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-03-27T09:10:22,158   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T09:10:22,159         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,168   moleculekit/fileformats/xtc/trr.c:11468:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,169   11468 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T09:10:22,169         |                   ^
2024-03-27T09:10:22,178   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-03-27T09:10:22,178   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T09:10:22,179         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,180   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,180    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-27T09:10:22,181         |                                                                                               ^
2024-03-27T09:10:22,189   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-03-27T09:10:22,190   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T09:10:22,191         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,200   moleculekit/fileformats/xtc/trr.c:11462:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,201   11462 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-03-27T09:10:22,202         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T09:10:22,210   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-03-27T09:10:22,211   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T09:10:22,211         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,221   moleculekit/fileformats/xtc/trr.c:11861:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,222   11861 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T09:10:22,222         |                 ^
2024-03-27T09:10:22,231   moleculekit/fileformats/xtc/trr.c:10083:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-03-27T09:10:22,231   10083 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-03-27T09:10:22,232         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,241   moleculekit/fileformats/xtc/trr.c:11857:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,242   11857 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-27T09:10:22,243         |                 ^
2024-03-27T09:10:22,252   moleculekit/fileformats/xtc/trr.c:10083:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-03-27T09:10:22,252   10083 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-03-27T09:10:22,253         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,262   moleculekit/fileformats/xtc/trr.c:11702:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,263   11702 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T09:10:22,264         |                   ^
2024-03-27T09:10:22,273   moleculekit/fileformats/xtc/trr.c:10079:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-03-27T09:10:22,273   10079 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-03-27T09:10:22,274         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,283   moleculekit/fileformats/xtc/trr.c:11698:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,284   11698 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-27T09:10:22,284         |                   ^
2024-03-27T09:10:22,293   moleculekit/fileformats/xtc/trr.c:10079:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-03-27T09:10:22,294   10079 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-03-27T09:10:22,295         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,310   moleculekit/fileformats/xtc/trr.c:11754:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,311   11754 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T09:10:22,312         |                   ^
2024-03-27T09:10:22,314   moleculekit/fileformats/xtc/trr.c:10063:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-03-27T09:10:22,315   10063 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-03-27T09:10:22,315         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:22,325   moleculekit/fileformats/xtc/trr.c:11750:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:22,326   11750 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-27T09:10:22,326         |                   ^
2024-03-27T09:10:22,335   moleculekit/fileformats/xtc/trr.c:10063:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-03-27T09:10:22,336   10063 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-03-27T09:10:22,336         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T09:10:29,017   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:10:29,190   building 'moleculekit.dcd' extension
2024-03-27T09:10:29,191   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T09:10:29,192   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-27T09:10:29,193   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-03-27T09:10:29,600   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:10:29,601                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:10:29,601                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:10:29,601                    from moleculekit/fileformats/dcd/dcd.c:1226:
2024-03-27T09:10:29,602   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:10:29,602      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:10:29,603         |  ^~~~~~~
2024-03-27T09:10:30,895   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-03-27T09:10:30,896                    from moleculekit/fileformats/dcd/dcd.c:1232:
2024-03-27T09:10:30,897   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,897     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-27T09:10:30,898         |            ^~~~~~~~~~~~~
2024-03-27T09:10:30,899   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,899     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-27T09:10:30,900         |            ^~~~~~~~~~~~~~
2024-03-27T09:10:30,900   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,901     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-03-27T09:10:30,902         |            ^~~~~~~~~~~~~~~
2024-03-27T09:10:30,902   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,903     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-03-27T09:10:30,904         |                   ^~~~~~~~~
2024-03-27T09:10:30,904   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,905     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-03-27T09:10:30,906         |                   ^~~~~~~~~
2024-03-27T09:10:30,907   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,908     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-03-27T09:10:30,909         |                   ^~~~~~~~~
2024-03-27T09:10:30,910   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,910     394 | static int fio_fclose(fio_fd fd) {
2024-03-27T09:10:30,911         |            ^~~~~~~~~~
2024-03-27T09:10:30,912   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-03-27T09:10:30,913     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-03-27T09:10:30,913         |            ^~~~~~~~
2024-03-27T09:10:45,382   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-03-27T09:10:45,382   moleculekit/fileformats/dcd/dcd.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:10:45,383    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-27T09:10:45,384         |                                        ^~~~~~~~~~~~~~~
2024-03-27T09:10:45,390   moleculekit/fileformats/dcd/dcd.c:7992:7: note: ‘__pyx_v_i’ was declared here
2024-03-27T09:10:45,390    7992 |   int __pyx_v_i;
2024-03-27T09:10:45,391         |       ^~~~~~~~~
2024-03-27T09:10:48,764   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-03-27T09:10:48,997   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-03-27T09:10:48,997   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:10:48,998     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-27T09:10:48,999         |                                                       ^~
2024-03-27T09:10:48,999   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:10:49,000     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-27T09:10:49,001         |                                                      ^~
2024-03-27T09:10:49,001   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:10:49,002     194 |     if (input_integer[0] != dcdcordmagic)
2024-03-27T09:10:49,003         |                          ^~
2024-03-27T09:10:49,004   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:10:49,004     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-27T09:10:49,005         |                                               ^~
2024-03-27T09:10:49,006   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T09:10:49,007     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-27T09:10:49,007         |                                               ^~
2024-03-27T09:10:49,010   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-03-27T09:10:49,011   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:10:49,011     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-03-27T09:10:49,012         |                       ^~
2024-03-27T09:10:49,013   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T09:10:49,013     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-03-27T09:10:49,014         |                                                 ^~
2024-03-27T09:10:49,041   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-03-27T09:10:49,041   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-03-27T09:10:49,042   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-03-27T09:10:49,043      96 | static void swap2_aligned(void *v, long ndata) {
2024-03-27T09:10:49,044         |             ^~~~~~~~~~~~~
2024-03-27T09:10:49,045   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-03-27T09:10:49,045      32 | static void swap2_unaligned(void *v, long ndata) {
2024-03-27T09:10:49,045         |             ^~~~~~~~~~~~~~~
2024-03-27T09:10:49,046   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-03-27T09:10:49,047   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-27T09:10:49,047     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-27T09:10:49,048         |            ^~~~~~~~~~~~~
2024-03-27T09:10:49,048   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-27T09:10:49,049     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-27T09:10:49,049         |            ^~~~~~~~~~~~~~
2024-03-27T09:10:50,330   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:10:50,463   building 'moleculekit.binpos' extension
2024-03-27T09:10:50,464   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T09:10:50,465   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-27T09:10:50,466   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-03-27T09:10:50,875   In file included from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T09:10:50,876                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T09:10:50,876                    from /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T09:10:50,877                    from moleculekit/fileformats/binpos/binpos.c:1226:
2024-03-27T09:10:50,877   /tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T09:10:50,878      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T09:10:50,879         |  ^~~~~~~
2024-03-27T09:11:05,410   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-03-27T09:11:05,411       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7474:13:
2024-03-27T09:11:05,419   moleculekit/fileformats/binpos/binpos.c:8015:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:11:05,420    8015 |   if (__pyx_t_1) {
2024-03-27T09:11:05,420         |      ^
2024-03-27T09:11:05,421   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-03-27T09:11:05,427   moleculekit/fileformats/binpos/binpos.c:7492:7: note: ‘__pyx_v_status’ was declared here
2024-03-27T09:11:05,428    7492 |   int __pyx_v_status;
2024-03-27T09:11:05,429         |       ^~~~~~~~~~~~~~
2024-03-27T09:11:05,430   moleculekit/fileformats/binpos/binpos.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T09:11:05,431    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-27T09:11:05,431         |                                        ^~~~~~~~~~~~~~~
2024-03-27T09:11:05,438   moleculekit/fileformats/binpos/binpos.c:7489:7: note: ‘__pyx_v_i’ was declared here
2024-03-27T09:11:05,439    7489 |   int __pyx_v_i;
2024-03-27T09:11:05,439         |       ^~~~~~~~~
2024-03-27T09:11:08,934   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-03-27T09:11:09,268   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:11:09,397   building 'moleculekit.tmalign' extension
2024-03-27T09:11:09,398   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T09:11:09,399   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-27T09:11:09,400   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-03-27T09:11:43,698   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-z_6iankf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-03-27T09:12:06,254   In file included from /usr/include/c++/12/vector:70,
2024-03-27T09:12:06,255                    from moleculekit/tmalign/tmalign_util.cpp:1250:
2024-03-27T09:12:06,256   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-03-27T09:12:06,257   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-03-27T09:12:06,257     439 |       vector<_Tp, _Alloc>::
2024-03-27T09:12:06,258         |       ^~~~~~~~~~~~~~~~~~~
2024-03-27T09:12:07,061   In file included from /usr/include/c++/12/vector:64:
2024-03-27T09:12:07,062   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-27T09:12:07,063       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20749:32,
2024-03-27T09:12:07,064       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20234:52:
2024-03-27T09:12:07,065   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-27T09:12:07,066    1287 |           _M_realloc_insert(end(), __x);
2024-03-27T09:12:07,066         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T09:12:07,067   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-27T09:12:07,067       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20763:33,
2024-03-27T09:12:07,068       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20234:52:
2024-03-27T09:12:07,068   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-27T09:12:07,069    1287 |           _M_realloc_insert(end(), __x);
2024-03-27T09:12:07,069         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T09:12:07,070   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-27T09:12:07,071       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20848:34,
2024-03-27T09:12:07,071       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20234:52:
2024-03-27T09:12:07,072   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-27T09:12:07,072    1287 |           _M_realloc_insert(end(), __x);
2024-03-27T09:12:07,073         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T09:12:09,665   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-03-27T09:12:10,171   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-03-27T09:12:10,172   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.28'
2024-03-27T09:12:10,173   installing to build/bdist.linux-armv7l/wheel
2024-03-27T09:12:10,174   running install
2024-03-27T09:12:10,207   running install_lib
2024-03-27T09:12:10,215   creating build/bdist.linux-armv7l
2024-03-27T09:12:10,216   creating build/bdist.linux-armv7l/wheel
2024-03-27T09:12:10,219   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,221   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T09:12:10,222   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T09:12:10,225   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T09:12:10,231   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T09:12:10,236   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-27T09:12:10,237   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-27T09:12:10,356   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-27T09:12:10,358   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,368   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,373   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-27T09:12:10,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-27T09:12:10,378   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-27T09:12:10,379   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-27T09:12:10,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-27T09:12:10,384   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T09:12:10,385   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T09:12:10,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T09:12:10,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T09:12:10,393   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T09:12:10,397   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T09:12:10,398   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T09:12:10,401   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T09:12:10,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T09:12:10,406   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T09:12:10,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,496   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T09:12:10,497   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T09:12:10,499   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T09:12:10,502   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,545   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T09:12:10,546   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T09:12:10,548   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T09:12:10,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T09:12:10,554   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T09:12:10,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T09:12:10,560   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,615   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,617   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,621   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,624   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,634   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T09:12:10,636   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T09:12:10,639   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T09:12:10,640   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T09:12:10,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T09:12:10,666   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-27T09:12:10,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-27T09:12:10,670   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T09:12:10,673   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T09:12:10,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T09:12:10,677   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T09:12:10,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T09:12:10,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T09:12:10,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T09:12:10,690   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T09:12:10,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T09:12:10,716   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-27T09:12:10,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-27T09:12:10,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T09:12:10,722   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T09:12:10,726   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T09:12:10,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T09:12:10,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T09:12:10,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T09:12:10,737   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T09:12:10,740   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T09:12:10,741   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T09:12:10,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T09:12:10,885   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-27T09:12:10,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-27T09:12:10,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T09:12:10,899   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-27T09:12:10,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-27T09:12:10,903   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,930   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-27T09:12:10,931   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-27T09:12:10,986   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-27T09:12:10,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:10,991   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:11,040   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-27T09:12:11,041   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-27T09:12:11,045   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-27T09:12:11,099   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:11,106   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,141   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,143   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,150   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-27T09:12:11,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-27T09:12:11,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-27T09:12:11,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,258   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-27T09:12:11,259   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-27T09:12:11,262   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-27T09:12:11,290   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-27T09:12:11,291   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-27T09:12:11,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-27T09:12:11,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T09:12:11,421   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-27T09:12:11,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-27T09:12:11,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-27T09:12:11,459   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:11,494   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T09:12:11,495   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T09:12:11,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T09:12:11,841   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-27T09:12:11,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-27T09:12:11,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T09:12:11,848   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-03-27T09:12:11,853   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,861   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,863   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,870   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,872   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,874   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,880   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,887   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,890   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,903   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,905   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,911   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,914   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,917   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,919   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,922   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,925   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,928   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,931   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,937   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,939   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,945   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,948   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,951   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,954   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,957   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,960   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,966   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,971   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,976   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,980   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,982   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,984   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,986   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,987   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,989   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,991   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,993   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,995   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,997   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:11,999   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,001   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,006   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,008   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,010   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,012   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,014   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,016   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,022   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,024   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,025   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,029   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,031   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,033   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,037   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,038   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,040   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,046   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,052   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,054   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,056   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,060   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,065   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,075   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,099   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,105   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,108   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,114   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,116   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,120   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,121   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,127   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,131   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,133   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,135   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,137   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,139   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,142   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,144   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,149   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,156   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,158   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,160   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,162   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,164   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,167   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,169   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,171   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2024-03-27T09:12:12,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,178   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,182   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,185   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,189   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,198   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,201   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,203   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,209   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,211   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,213   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,215   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,217   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,218   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,220   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,222   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,224   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,226   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,228   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,230   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,233   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,238   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,239   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,243   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,245   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T09:12:12,247   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,250   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,255   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,259   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,262   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,264   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T09:12:12,270   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T09:12:12,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T09:12:12,273   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T09:12:12,276   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T09:12:12,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T09:12:12,281   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,283   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,286   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-27T09:12:12,287   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-27T09:12:12,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-27T09:12:12,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,321   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,362   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T09:12:12,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T09:12:12,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T09:12:12,368   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T09:12:12,372   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T09:12:12,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,381   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,382   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,388   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,394   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,399   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,404   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,407   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,411   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,416   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,429   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T09:12:12,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,507   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,510   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,535   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,649   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-27T09:12:12,650   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-27T09:12:12,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-27T09:12:12,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:12,928   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-27T09:12:12,929   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-27T09:12:13,014   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-27T09:12:13,018   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:13,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:13,025   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,026   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,029   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,032   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,038   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,045   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,052   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-27T09:12:13,054   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-27T09:12:13,057   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-27T09:12:13,060   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,070   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,075   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,082   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T09:12:13,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:13,090   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:13,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T09:12:13,123   running install_egg_info
2024-03-27T09:12:13,131   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.28-py3.11.egg-info
2024-03-27T09:12:13,154   running install_scripts
2024-03-27T09:12:13,223   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.28.dist-info/WHEEL
2024-03-27T09:12:13,227   creating '/tmp/pip-wheel-yar1rkuy/.tmp-r7ocid_h/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-27T09:12:13,230   adding 'moleculekit/__init__.py'
2024-03-27T09:12:13,232   adding 'moleculekit/_version.py'
2024-03-27T09:12:13,234   adding 'moleculekit/align.py'
2024-03-27T09:12:13,556   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:13,717   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:13,723   adding 'moleculekit/bondguesser.py'
2024-03-27T09:12:13,967   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:13,975   adding 'moleculekit/config.py'
2024-03-27T09:12:14,236   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:14,396   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:14,402   adding 'moleculekit/dihedral.py'
2024-03-27T09:12:14,404   adding 'moleculekit/distance.py'
2024-03-27T09:12:14,723   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:14,734   adding 'moleculekit/home.py'
2024-03-27T09:12:14,735   adding 'moleculekit/logging.ini'
2024-03-27T09:12:14,750   adding 'moleculekit/molecule.py'
2024-03-27T09:12:14,979   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:14,987   adding 'moleculekit/opm.py'
2024-03-27T09:12:14,990   adding 'moleculekit/periodictable.py'
2024-03-27T09:12:14,991   adding 'moleculekit/pymolgraphics.py'
2024-03-27T09:12:14,992   adding 'moleculekit/rcsb.py'
2024-03-27T09:12:14,994   adding 'moleculekit/rdkitintegration.py'
2024-03-27T09:12:15,007   adding 'moleculekit/readers.py'
2024-03-27T09:12:15,609   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:15,913   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:15,925   adding 'moleculekit/util.py'
2024-03-27T09:12:15,926   adding 'moleculekit/version.py'
2024-03-27T09:12:15,928   adding 'moleculekit/viewer.py'
2024-03-27T09:12:15,929   adding 'moleculekit/vmd_wrapper'
2024-03-27T09:12:15,931   adding 'moleculekit/vmdgraphics.py'
2024-03-27T09:12:15,933   adding 'moleculekit/vmdviewer.py'
2024-03-27T09:12:16,188   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:16,202   adding 'moleculekit/writers.py'
2024-03-27T09:12:16,464   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:16,473   adding 'moleculekit/atomselect/__init__.py'
2024-03-27T09:12:16,474   adding 'moleculekit/atomselect/analyze.py'
2024-03-27T09:12:16,477   adding 'moleculekit/atomselect/atomselect.py'
2024-03-27T09:12:16,479   adding 'moleculekit/atomselect/languageparser.py'
2024-03-27T09:12:16,583   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-03-27T09:12:16,594   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-03-27T09:12:16,706   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-03-27T09:12:16,715   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-03-27T09:12:16,804   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-03-27T09:12:16,814   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-03-27T09:12:16,916   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-03-27T09:12:16,927   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-03-27T09:12:16,929   adding 'moleculekit/fileformats/__init__.py'
2024-03-27T09:12:16,934   adding 'moleculekit/fileformats/netcdf.py'
2024-03-27T09:12:16,936   adding 'moleculekit/fileformats/utils.py'
2024-03-27T09:12:16,997   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-03-27T09:12:17,004   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-03-27T09:12:17,006   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-03-27T09:12:17,009   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-03-27T09:12:17,010   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-03-27T09:12:17,016   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-03-27T09:12:17,019   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-03-27T09:12:17,082   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-03-27T09:12:17,090   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-03-27T09:12:17,091   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-03-27T09:12:17,094   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-03-27T09:12:17,095   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-03-27T09:12:17,097   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-03-27T09:12:17,099   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-03-27T09:12:17,104   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-03-27T09:12:17,109   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-03-27T09:12:17,204   adding 'moleculekit/fileformats/xtc/trr.c'
2024-03-27T09:12:17,216   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-03-27T09:12:17,217   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-03-27T09:12:17,218   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-03-27T09:12:17,307   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-03-27T09:12:17,316   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-03-27T09:12:17,317   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-03-27T09:12:17,319   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-03-27T09:12:17,321   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-03-27T09:12:17,323   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-03-27T09:12:17,325   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-03-27T09:12:17,326   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-03-27T09:12:17,328   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-03-27T09:12:17,330   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-03-27T09:12:17,336   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-03-27T09:12:17,339   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-03-27T09:12:17,340   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-03-27T09:12:17,343   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-03-27T09:12:17,345   adding 'moleculekit/interactions/__init__.py'
2024-03-27T09:12:17,626   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:17,895   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:17,906   adding 'moleculekit/interactions/interactions.py'
2024-03-27T09:12:18,185   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:18,471   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T09:12:18,571   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-03-27T09:12:18,580   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-03-27T09:12:18,671   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-03-27T09:12:18,680   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-03-27T09:12:18,771   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-03-27T09:12:18,780   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-03-27T09:12:18,871   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-03-27T09:12:18,880   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-03-27T09:12:18,967   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-03-27T09:12:18,976   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-03-27T09:12:18,977   adding 'moleculekit/pdbx/__init__.py'
2024-03-27T09:12:18,981   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-03-27T09:12:18,984   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-03-27T09:12:18,986   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-03-27T09:12:18,987   adding 'moleculekit/pdbx/reader/__init__.py'
2024-03-27T09:12:18,990   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-03-27T09:12:18,992   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-03-27T09:12:18,993   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-03-27T09:12:18,994   adding 'moleculekit/pdbx/tests/__init__.py'
2024-03-27T09:12:18,996   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-03-27T09:12:18,997   adding 'moleculekit/pdbx/writer/__init__.py'
2024-03-27T09:12:18,999   adding 'moleculekit/ply/__init__.py'
2024-03-27T09:12:19,003   adding 'moleculekit/ply/lex.py'
2024-03-27T09:12:19,014   adding 'moleculekit/ply/yacc.py'
2024-03-27T09:12:19,017   adding 'moleculekit/projections/__init__.py'
2024-03-27T09:12:19,019   adding 'moleculekit/projections/metriccoordinate.py'
2024-03-27T09:12:19,022   adding 'moleculekit/projections/metricdihedral.py'
2024-03-27T09:12:19,026   adding 'moleculekit/projections/metricdistance.py'
2024-03-27T09:12:19,029   adding 'moleculekit/projections/metricfluctuation.py'
2024-03-27T09:12:19,030   adding 'moleculekit/projections/metricgyration.py'
2024-03-27T09:12:19,034   adding 'moleculekit/projections/metricplumed2.py'
2024-03-27T09:12:19,036   adding 'moleculekit/projections/metricrmsd.py'
2024-03-27T09:12:19,038   adding 'moleculekit/projections/metricsasa.py'
2024-03-27T09:12:19,040   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-03-27T09:12:19,042   adding 'moleculekit/projections/metricshell.py'
2024-03-27T09:12:19,044   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-03-27T09:12:19,046   adding 'moleculekit/projections/metrictmscore.py'
2024-03-27T09:12:19,047   adding 'moleculekit/projections/projection.py'
2024-03-27T09:12:19,049   adding 'moleculekit/projections/util.py'
2024-03-27T09:12:19,051   adding 'moleculekit/share/ALA.cif'
2024-03-27T09:12:19,052   adding 'moleculekit/share/backbone.cif'
2024-03-27T09:12:20,356   adding 'moleculekit/share/opm_sequences.json'
2024-03-27T09:12:20,441   adding 'moleculekit/share/atomselect/atomselect.json'
2024-03-27T09:12:20,447   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-03-27T09:12:20,448   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-03-27T09:12:20,449   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-03-27T09:12:20,450   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-03-27T09:12:20,452   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-03-27T09:12:20,454   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-03-27T09:12:20,456   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-03-27T09:12:20,458   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-03-27T09:12:20,461   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-03-27T09:12:20,463   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-03-27T09:12:20,465   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-03-27T09:12:20,467   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-03-27T09:12:20,468   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-03-27T09:12:20,469   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-03-27T09:12:20,471   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-03-27T09:12:20,472   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-03-27T09:12:20,474   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-03-27T09:12:20,475   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-03-27T09:12:20,477   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-03-27T09:12:20,478   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-03-27T09:12:20,479   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-03-27T09:12:20,481   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-03-27T09:12:20,482   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-03-27T09:12:20,484   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-03-27T09:12:20,485   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-03-27T09:12:20,486   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-03-27T09:12:20,488   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-03-27T09:12:20,489   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-03-27T09:12:20,490   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-03-27T09:12:20,491   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-03-27T09:12:20,493   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-03-27T09:12:20,494   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-03-27T09:12:20,495   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-03-27T09:12:20,496   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-03-27T09:12:20,498   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-03-27T09:12:20,499   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-03-27T09:12:20,501   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-03-27T09:12:20,502   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-03-27T09:12:20,503   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-03-27T09:12:20,506   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-03-27T09:12:20,507   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-03-27T09:12:20,509   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-03-27T09:12:20,510   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-03-27T09:12:20,512   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-03-27T09:12:20,513   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-03-27T09:12:20,515   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-03-27T09:12:20,516   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-03-27T09:12:20,518   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-03-27T09:12:20,521   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-03-27T09:12:20,523   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-03-27T09:12:20,524   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-03-27T09:12:20,526   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-03-27T09:12:20,528   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-03-27T09:12:20,529   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-03-27T09:12:20,531   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-03-27T09:12:20,532   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-03-27T09:12:20,534   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-03-27T09:12:20,536   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-03-27T09:12:20,537   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-03-27T09:12:20,539   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-03-27T09:12:20,540   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-03-27T09:12:20,542   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-03-27T09:12:20,544   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-03-27T09:12:20,545   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-03-27T09:12:20,547   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-03-27T09:12:20,548   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-03-27T09:12:20,549   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-03-27T09:12:20,551   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-03-27T09:12:20,552   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-03-27T09:12:20,553   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-03-27T09:12:20,555   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-03-27T09:12:20,557   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-03-27T09:12:20,558   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-03-27T09:12:20,559   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-03-27T09:12:20,561   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-03-27T09:12:20,562   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-03-27T09:12:20,564   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-03-27T09:12:20,565   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-03-27T09:12:20,566   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-03-27T09:12:20,568   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-03-27T09:12:20,569   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-03-27T09:12:20,571   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-03-27T09:12:20,572   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-03-27T09:12:20,574   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-03-27T09:12:20,575   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-03-27T09:12:20,577   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-03-27T09:12:20,578   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-03-27T09:12:20,580   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-03-27T09:12:20,581   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-03-27T09:12:20,583   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-03-27T09:12:20,585   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-03-27T09:12:20,586   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-03-27T09:12:20,587   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-03-27T09:12:20,589   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-03-27T09:12:20,590   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-03-27T09:12:20,592   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-03-27T09:12:20,593   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-03-27T09:12:20,595   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-03-27T09:12:20,596   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-03-27T09:12:20,597   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-03-27T09:12:20,599   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-03-27T09:12:20,600   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-03-27T09:12:20,601   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-03-27T09:12:20,603   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-03-27T09:12:20,604   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-03-27T09:12:20,605   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-03-27T09:12:20,606   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-03-27T09:12:20,608   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-03-27T09:12:20,609   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-03-27T09:12:20,611   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-03-27T09:12:20,612   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-03-27T09:12:20,614   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-03-27T09:12:20,615   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-03-27T09:12:20,616   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-03-27T09:12:20,618   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-03-27T09:12:20,620   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-03-27T09:12:20,621   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-03-27T09:12:20,623   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-03-27T09:12:20,624   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-03-27T09:12:20,626   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-03-27T09:12:20,627   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-03-27T09:12:20,629   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-03-27T09:12:20,631   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-03-27T09:12:20,632   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-03-27T09:12:20,634   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-03-27T09:12:20,636   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-03-27T09:12:20,638   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-03-27T09:12:20,640   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-03-27T09:12:20,642   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-03-27T09:12:20,644   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-03-27T09:12:20,646   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-03-27T09:12:20,648   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-03-27T09:12:20,650   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-03-27T09:12:20,651   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-03-27T09:12:20,652   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-03-27T09:12:20,654   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-03-27T09:12:20,655   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-03-27T09:12:20,656   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-03-27T09:12:20,657   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-03-27T09:12:20,659   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-03-27T09:12:20,660   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-03-27T09:12:20,661   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-03-27T09:12:20,663   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-03-27T09:12:20,664   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-03-27T09:12:20,665   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-03-27T09:12:20,666   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-03-27T09:12:20,667   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-03-27T09:12:20,669   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-03-27T09:12:20,670   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-03-27T09:12:20,671   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-03-27T09:12:20,673   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-03-27T09:12:20,674   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-03-27T09:12:20,675   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-03-27T09:12:20,676   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-03-27T09:12:20,678   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-03-27T09:12:20,679   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-03-27T09:12:20,681   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-03-27T09:12:20,682   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-03-27T09:12:20,684   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-03-27T09:12:20,685   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-03-27T09:12:20,687   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-03-27T09:12:20,688   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-03-27T09:12:20,690   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-03-27T09:12:20,691   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-03-27T09:12:20,693   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-03-27T09:12:20,694   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-03-27T09:12:20,695   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-03-27T09:12:20,697   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-03-27T09:12:20,698   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-03-27T09:12:20,699   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-03-27T09:12:20,701   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-03-27T09:12:20,702   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-03-27T09:12:20,703   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-03-27T09:12:20,705   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-03-27T09:12:20,706   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-03-27T09:12:20,708   adding 'moleculekit/smallmol/__init__.py'
2024-03-27T09:12:20,713   adding 'moleculekit/smallmol/smallmol.py'
2024-03-27T09:12:20,716   adding 'moleculekit/smallmol/smallmollib.py'
2024-03-27T09:12:20,718   adding 'moleculekit/smallmol/test_smallmol.py'
2024-03-27T09:12:20,719   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-03-27T09:12:20,721   adding 'moleculekit/smallmol/util.py'
2024-03-27T09:12:20,723   adding 'moleculekit/smallmol/tools/__init__.py'
2024-03-27T09:12:20,724   adding 'moleculekit/smallmol/tools/clustering.py'
2024-03-27T09:12:20,726   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-03-27T09:12:20,727   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-03-27T09:12:20,817   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-03-27T09:12:20,826   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-03-27T09:12:20,827   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-03-27T09:12:20,829   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-03-27T09:12:20,847   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-03-27T09:12:20,850   adding 'moleculekit/tools/__init__.py'
2024-03-27T09:12:20,852   adding 'moleculekit/tools/atomtyper.py'
2024-03-27T09:12:20,854   adding 'moleculekit/tools/autosegment.py'
2024-03-27T09:12:20,856   adding 'moleculekit/tools/crystalpacking.py'
2024-03-27T09:12:20,860   adding 'moleculekit/tools/detect.py'
2024-03-27T09:12:20,862   adding 'moleculekit/tools/docking.py'
2024-03-27T09:12:20,864   adding 'moleculekit/tools/graphalignment.py'
2024-03-27T09:12:20,865   adding 'moleculekit/tools/hhblitsprofile.py'
2024-03-27T09:12:20,867   adding 'moleculekit/tools/modelling.py'
2024-03-27T09:12:20,868   adding 'moleculekit/tools/moleculechecks.py'
2024-03-27T09:12:20,874   adding 'moleculekit/tools/preparation.py'
2024-03-27T09:12:20,877   adding 'moleculekit/tools/preparation_customres.py'
2024-03-27T09:12:20,879   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-03-27T09:12:20,882   adding 'moleculekit/tools/voxeldescriptors.py'
2024-03-27T09:12:20,884   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-03-27T09:12:20,885   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-03-27T09:12:20,977   adding 'moleculekit/wrapping/wrapping.cpp'
2024-03-27T09:12:20,986   adding 'moleculekit/wrapping/wrapping.pyx'
2024-03-27T09:12:20,988   adding 'moleculekit-1.8.28.dist-info/LICENSE'
2024-03-27T09:12:20,990   adding 'moleculekit-1.8.28.dist-info/METADATA'
2024-03-27T09:12:20,991   adding 'moleculekit-1.8.28.dist-info/WHEEL'
2024-03-27T09:12:20,992   adding 'moleculekit-1.8.28.dist-info/top_level.txt'
2024-03-27T09:12:20,997   adding 'moleculekit-1.8.28.dist-info/RECORD'
2024-03-27T09:12:21,475   removing build/bdist.linux-armv7l/wheel
2024-03-27T09:12:21,816   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-03-27T09:12:22,138   Created wheel for moleculekit: filename=moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl size=15271424 sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582
2024-03-27T09:12:22,139   Stored in directory: /tmp/pip-ephem-wheel-cache-u2ifm_zs/wheels/0d/ae/73/ed8f1ed37b7c4508d5cfba391e96456f6b2ddae80485e8ee87
2024-03-27T09:12:22,167 Successfully built moleculekit
2024-03-27T09:12:22,821 Removed build tracker: '/tmp/pip-build-tracker-ydogqzmr'