2024-03-27T10:50:27,417 Created temporary directory: /tmp/pip-build-tracker-1y8aovoi
2024-03-27T10:50:27,419 Initialized build tracking at /tmp/pip-build-tracker-1y8aovoi
2024-03-27T10:50:27,419 Created build tracker: /tmp/pip-build-tracker-1y8aovoi
2024-03-27T10:50:27,420 Entered build tracker: /tmp/pip-build-tracker-1y8aovoi
2024-03-27T10:50:27,420 Created temporary directory: /tmp/pip-wheel-yd148t2l
2024-03-27T10:50:27,424 Created temporary directory: /tmp/pip-ephem-wheel-cache-8yd68hq6
2024-03-27T10:50:27,449 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-27T10:50:27,452 2 location(s) to search for versions of moleculekit:
2024-03-27T10:50:27,452 * https://pypi.org/simple/moleculekit/
2024-03-27T10:50:27,452 * https://www.piwheels.org/simple/moleculekit/
2024-03-27T10:50:27,453 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-03-27T10:50:27,454 Getting page https://pypi.org/simple/moleculekit/
2024-03-27T10:50:27,455 Found index url https://pypi.org/simple/
2024-03-27T10:50:27,603 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-03-27T10:50:27,643   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,644   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-03-27T10:50:27,645   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,646   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-03-27T10:50:27,646   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,647   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-03-27T10:50:27,648   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,648   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-03-27T10:50:27,649   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,650   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-03-27T10:50:27,651   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,651   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-03-27T10:50:27,652   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,653   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-03-27T10:50:27,653   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,654   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-03-27T10:50:27,654   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,655   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-03-27T10:50:27,655   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,656   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-03-27T10:50:27,657   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,657   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-03-27T10:50:27,658   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,659   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-03-27T10:50:27,659   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,660   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-03-27T10:50:27,661   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,661   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-03-27T10:50:27,662   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,662   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-03-27T10:50:27,663   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,664   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-03-27T10:50:27,665   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,665   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-03-27T10:50:27,666   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,666   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-03-27T10:50:27,667   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,668   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-03-27T10:50:27,668   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,669   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-03-27T10:50:27,669   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,670   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-03-27T10:50:27,670   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,671   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-03-27T10:50:27,672   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,673   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-03-27T10:50:27,673   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,674   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-03-27T10:50:27,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,675   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-03-27T10:50:27,676   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,676   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-03-27T10:50:27,677   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,678   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-03-27T10:50:27,678   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,679   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-03-27T10:50:27,679   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,680   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-03-27T10:50:27,681   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,681   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-03-27T10:50:27,682   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,683   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-03-27T10:50:27,684   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,685   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-03-27T10:50:27,685   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,686   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-03-27T10:50:27,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,687   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-03-27T10:50:27,688   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-03-27T10:50:27,689   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2024-03-27T10:50:27,691   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
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2024-03-27T10:50:27,692   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2024-03-27T10:50:27,697   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-03-27T10:50:27,697   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-03-27T10:50:27,698   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-03-27T10:50:27,698   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-27T10:50:27,700   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-03-27T10:50:27,701   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-03-27T10:50:27,703   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
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2024-03-27T10:50:27,704   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
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2024-03-27T10:50:27,708   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
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2024-03-27T10:50:27,717   Found link https://files.pythonhosted.org/packages/17/1c/02715b1ba7af95549df42e637af515cc5f062c0a6fb8bdeca03404949043/moleculekit-0.7.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.7.0
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2024-03-27T10:50:27,733   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-03-27T10:50:27,733   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-03-27T10:50:27,734   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-03-27T10:50:27,735   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-03-27T10:50:27,736   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-03-27T10:50:27,736   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-03-27T10:50:27,737   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-03-27T10:50:27,738   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-03-27T10:50:27,738   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-03-27T10:50:27,739   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-03-27T10:50:27,740   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-03-27T10:50:27,741   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-03-27T10:50:27,741   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-03-27T10:50:27,742   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-03-27T10:50:27,743   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-03-27T10:50:27,743   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-03-27T10:50:27,744   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-03-27T10:50:27,744   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-03-27T10:50:27,745   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-03-27T10:50:27,746   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-03-27T10:50:27,746   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-03-27T10:50:27,747   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-03-27T10:50:27,748   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-03-27T10:50:27,748   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-03-27T10:50:27,749   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-03-27T10:50:27,750   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-03-27T10:50:27,751   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-03-27T10:50:27,752   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-03-27T10:50:27,752   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-03-27T10:50:27,753   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-03-27T10:50:27,754   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-03-27T10:50:27,754   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-03-27T10:50:27,755   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-03-27T10:50:27,755   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-03-27T10:50:27,756   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-03-27T10:50:27,757   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-03-27T10:50:27,758   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-03-27T10:50:27,758   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-03-27T10:50:27,759   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-03-27T10:50:27,759   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-03-27T10:50:27,760   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-03-27T10:50:27,761   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-03-27T10:50:27,762   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-03-27T10:50:27,762   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-03-27T10:50:27,763   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-03-27T10:50:27,764   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-03-27T10:50:27,764   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-03-27T10:50:27,765   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-03-27T10:50:27,766   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-03-27T10:50:27,767   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-03-27T10:50:27,768   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-03-27T10:50:27,769   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-03-27T10:50:27,770   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-03-27T10:50:27,771   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-03-27T10:50:27,772   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-03-27T10:50:27,773   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-03-27T10:50:27,774   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-03-27T10:50:27,775   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-03-27T10:50:27,775   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-03-27T10:50:27,776   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-03-27T10:50:27,777   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-03-27T10:50:27,778   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-03-27T10:50:27,780   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-03-27T10:50:27,781   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-03-27T10:50:27,782   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-03-27T10:50:27,783   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-03-27T10:50:27,784   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-03-27T10:50:27,784   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-03-27T10:50:27,785   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-03-27T10:50:27,786   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-03-27T10:50:27,787   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-03-27T10:50:27,788   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-03-27T10:50:27,789   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-03-27T10:50:27,790   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-03-27T10:50:27,792   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-03-27T10:50:27,792   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-03-27T10:50:27,793   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-03-27T10:50:27,794   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-03-27T10:50:27,796   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-03-27T10:50:27,797   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-03-27T10:50:27,798   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-03-27T10:50:27,799   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-03-27T10:50:27,799   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-03-27T10:50:27,800   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-03-27T10:50:27,801   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-03-27T10:50:27,802   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-03-27T10:50:27,803   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-03-27T10:50:27,804   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-03-27T10:50:27,805   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-03-27T10:50:27,806   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-03-27T10:50:27,807   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-03-27T10:50:27,808   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-03-27T10:50:27,809   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-03-27T10:50:27,810   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-03-27T10:50:27,811   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-03-27T10:50:27,812   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-03-27T10:50:27,813   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-03-27T10:50:27,814   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-03-27T10:50:27,815   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-03-27T10:50:27,816   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-03-27T10:50:27,817   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-03-27T10:50:27,818   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-03-27T10:50:27,819   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-03-27T10:50:27,820   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-03-27T10:50:27,820   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-03-27T10:50:27,821   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-03-27T10:50:27,822   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-03-27T10:50:27,823 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-03-27T10:50:27,824 Getting page https://www.piwheels.org/simple/moleculekit/
2024-03-27T10:50:27,826 Found index url https://www.piwheels.org/simple/
2024-03-27T10:50:28,045 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-03-27T10:50:28,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv6l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp311-cp311-linux_armv7l.whl#sha256=0bd78844c5d2c1631992bbe75050af4b5c6a7c95431e8637867fb30717804582 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv6l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.28-cp39-cp39-linux_armv7l.whl#sha256=04c1c3834e4447c5f50b16abf23b1e9f68e8e832712398c35671d844fbf2f35e (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv6l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp311-cp311-linux_armv7l.whl#sha256=8a573033f33f4f16ba75cf9a05329b6842b25a3947b5cfd1a5c439e7a837fa1a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv6l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.27-cp39-cp39-linux_armv7l.whl#sha256=0e7b2ee30b7a5ead76d5e0591629b4c746dd586ec0da5b68f13ab66169217a9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv6l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp311-cp311-linux_armv7l.whl#sha256=49f97c74078233f9b9c45b8e685536e701ae768f527b1c4a6c6a09be4faa18e9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv6l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.26-cp39-cp39-linux_armv7l.whl#sha256=383042586b9089491f7fb534cdbcab48294ebddbd0a60b4a87bd929a5a47d553 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,139   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv6l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,139   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp311-cp311-linux_armv7l.whl#sha256=4c7c0ad147877ad9858b28bbf91bac3c9c52fc1b86d17b5cbb395816826d5795 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,140   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv6l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,141   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.24-cp39-cp39-linux_armv7l.whl#sha256=fc16c6b9060deb49db4377faa53c9889cbab863b3abe9c4ed14a551a51d9cd2d (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,141   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv6l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,142   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp311-cp311-linux_armv7l.whl#sha256=877765dd6aa49fb42e14a561a757833a39111f4f01238ad7b2d0297d4c4a48e5 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,142   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv6l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,143   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.23-cp39-cp39-linux_armv7l.whl#sha256=e41ba043b751ba58de8540c1979ac62e2673162ec1f06d8d94b8864df41a51da (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,143   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv6l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-03-27T10:50:28,144   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.22-cp311-cp311-linux_armv7l.whl#sha256=d8ea2f2f8a098e1d7c5fadaf1388bb018198ab94f1c54c9664724654a10d60f7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-03-27T10:50:28,243   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,244   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,245   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,246   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,247   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,248   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,248   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,249   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,249   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,250   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,250   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,251   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,251   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,252   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,253   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,253   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,254   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,254   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,256   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,256   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,257   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,258   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,259   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,260   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,261   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,261   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,262   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,263   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,263   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,264   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,265   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,265   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,266   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,266   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,267   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,267   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,268   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,269   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,269   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,270   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,271   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,271   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,272   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,273   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,273   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,274   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,274   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,275   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,275   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,276   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,276   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,277   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,278   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,278   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,279   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,279   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,280   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,281   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,281   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,282   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,282   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,283   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,283   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,284   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,284   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,285   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,285   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,286   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,316   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,316   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T10:50:28,322   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,323   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,324   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T10:50:28,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T10:50:28,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T10:50:28,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2024-03-27T10:50:28,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-03-27T10:50:28,333 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-03-27T10:50:28,333 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-03-27T10:50:28,374 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-03-27T10:50:28,393 Collecting moleculekit==1.8.29
2024-03-27T10:50:28,395   Created temporary directory: /tmp/pip-unpack-cw65s0oc
2024-03-27T10:50:28,612   Downloading moleculekit-1.8.29.tar.gz (6.8 MB)
2024-03-27T10:50:32,881   Added moleculekit==1.8.29 from https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz to build tracker '/tmp/pip-build-tracker-1y8aovoi'
2024-03-27T10:50:32,890   Created temporary directory: /tmp/pip-build-env-74_gb0cm
2024-03-27T10:50:32,895   Installing build dependencies: started
2024-03-27T10:50:32,896   Running command pip subprocess to install build dependencies
2024-03-27T10:50:34,091   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-27T10:50:34,644   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-27T10:50:36,120   Collecting setuptools
2024-03-27T10:50:36,136     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB)
2024-03-27T10:50:36,836     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T10:50:36,839     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T10:50:36,842     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T10:50:36,846     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T10:50:36,849     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2024-03-27T10:50:37,419   Collecting numpy>=1.18.5
2024-03-27T10:50:37,440     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.4-cp311-cp311-linux_armv7l.whl (5.6 MB)
2024-03-27T10:50:39,486   Collecting Cython>=0.29.21
2024-03-27T10:50:39,543     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp311-cp311-linux_armv7l.whl (11.7 MB)
2024-03-27T10:50:40,223   Collecting toml
2024-03-27T10:50:40,238     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-03-27T10:50:40,333   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-03-27T10:50:40,348     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-03-27T10:50:43,233   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2024-03-27T10:50:43,270     Creating /tmp/pip-build-env-74_gb0cm/overlay/local/bin
2024-03-27T10:50:43,272     changing mode of /tmp/pip-build-env-74_gb0cm/overlay/local/bin/versioneer to 755
2024-03-27T10:50:55,943     changing mode of /tmp/pip-build-env-74_gb0cm/overlay/local/bin/f2py to 755
2024-03-27T10:51:02,358     changing mode of /tmp/pip-build-env-74_gb0cm/overlay/local/bin/cygdb to 755
2024-03-27T10:51:02,360     changing mode of /tmp/pip-build-env-74_gb0cm/overlay/local/bin/cython to 755
2024-03-27T10:51:02,362     changing mode of /tmp/pip-build-env-74_gb0cm/overlay/local/bin/cythonize to 755
2024-03-27T10:51:02,411   Successfully installed Cython-3.0.9 numpy-1.26.4 setuptools-69.2.0 toml-0.10.2 versioneer-0.28
2024-03-27T10:51:03,163   Installing build dependencies: finished with status 'done'
2024-03-27T10:51:03,168   Getting requirements to build wheel: started
2024-03-27T10:51:03,169   Running command Getting requirements to build wheel
2024-03-27T10:51:39,094   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-03-27T10:51:47,775   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,776   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,776   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,777   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,777   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,778   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,779   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,779   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,780   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,780   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,781   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T10:51:47,781   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T10:51:47,782   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T10:51:47,783   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2024-03-27T10:51:47,783   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2024-03-27T10:51:47,783   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-03-27T10:51:47,784   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-03-27T10:51:47,784   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-03-27T10:51:47,785   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-03-27T10:51:47,785   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-03-27T10:51:47,786   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-03-27T10:51:47,786   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-03-27T10:51:47,787   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-03-27T10:51:47,787   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-03-27T10:51:47,788   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-03-27T10:51:47,789   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-03-27T10:51:47,790   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-03-27T10:51:47,790   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-03-27T10:51:47,793   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-03-27T10:51:47,794   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-03-27T10:51:48,070   running egg_info
2024-03-27T10:51:48,076   writing moleculekit.egg-info/PKG-INFO
2024-03-27T10:51:48,079   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-27T10:51:48,081   writing requirements to moleculekit.egg-info/requires.txt
2024-03-27T10:51:48,083   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-27T10:51:48,114   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,115   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,116   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,116   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,117   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,117   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,124   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,125   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,126   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,126   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,127   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,128   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,129   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,130   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,130   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,131   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,131   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,132   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,133   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,133   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,133   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,134   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,135   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,135   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,136   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,136   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,137   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,140   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,141   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,145   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,147   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,147   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,148   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,148   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,149   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,149   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,150   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,150   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-03-27T10:51:48,151   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,151   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,152   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,152   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,153   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,154   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:48,154   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T10:51:48,186   reading manifest template 'MANIFEST.in'
2024-03-27T10:51:48,515   no previously-included directories found matching 'moleculekit/test-data'
2024-03-27T10:51:48,516   no previously-included directories found matching 'moleculekit/tests'
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2024-03-27T10:51:48,518   adding license file 'LICENSE'
2024-03-27T10:51:48,533   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T10:51:50,203   Getting requirements to build wheel: finished with status 'done'
2024-03-27T10:51:50,217   Installing backend dependencies: started
2024-03-27T10:51:50,219   Running command pip subprocess to install backend dependencies
2024-03-27T10:51:51,511   Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-03-27T10:51:52,120   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-03-27T10:51:52,751   Collecting wheel
2024-03-27T10:51:52,767     Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB)
2024-03-27T10:51:55,259   Installing collected packages: wheel
2024-03-27T10:51:55,502     Creating /tmp/pip-build-env-74_gb0cm/normal/local/bin
2024-03-27T10:51:55,504     changing mode of /tmp/pip-build-env-74_gb0cm/normal/local/bin/wheel to 755
2024-03-27T10:51:55,516   Successfully installed wheel-0.43.0
2024-03-27T10:51:56,046   Installing backend dependencies: finished with status 'done'
2024-03-27T10:51:56,048   Created temporary directory: /tmp/pip-modern-metadata-p1v_6yco
2024-03-27T10:51:56,050   Preparing metadata (pyproject.toml): started
2024-03-27T10:51:56,052   Running command Preparing metadata (pyproject.toml)
2024-03-27T10:51:58,499   running dist_info
2024-03-27T10:51:58,501   creating /tmp/pip-modern-metadata-p1v_6yco/moleculekit.egg-info
2024-03-27T10:51:58,507   writing /tmp/pip-modern-metadata-p1v_6yco/moleculekit.egg-info/PKG-INFO
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2024-03-27T10:51:58,555   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,556   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,556   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,557   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,557   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,558   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,559   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,559   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,559   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,560   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,560   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,561   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,562   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,563   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,563   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,564   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,564   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,564   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,565   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,565   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,566   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,566   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,567   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,567   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,568   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,568   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,569   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,569   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,570   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,570   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,571   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,572   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,572   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,572   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,573   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,573   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,574   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,574   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,575   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,575   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,575   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,576   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,576   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,577   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,577   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,578   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,578   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,579   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,579   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,580   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,581   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,581   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,582   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,582   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,582   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:51:58,583   reading manifest file '/tmp/pip-modern-metadata-p1v_6yco/moleculekit.egg-info/SOURCES.txt'
2024-03-27T10:51:58,583   reading manifest template 'MANIFEST.in'
2024-03-27T10:51:58,867   no previously-included directories found matching 'moleculekit/test-data'
2024-03-27T10:51:58,868   no previously-included directories found matching 'moleculekit/tests'
2024-03-27T10:51:58,869   no previously-included directories found matching 'package'
2024-03-27T10:51:58,870   adding license file 'LICENSE'
2024-03-27T10:51:58,881   writing manifest file '/tmp/pip-modern-metadata-p1v_6yco/moleculekit.egg-info/SOURCES.txt'
2024-03-27T10:51:58,889   creating '/tmp/pip-modern-metadata-p1v_6yco/moleculekit-1.8.29.dist-info'
2024-03-27T10:51:59,118   Preparing metadata (pyproject.toml): finished with status 'done'
2024-03-27T10:51:59,124   Source in /tmp/pip-wheel-yd148t2l/moleculekit_6daf493811d6498fa06d7e2a2146c5e6 has version 1.8.29, which satisfies requirement moleculekit==1.8.29 from https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz
2024-03-27T10:51:59,125   Removed moleculekit==1.8.29 from https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz from build tracker '/tmp/pip-build-tracker-1y8aovoi'
2024-03-27T10:51:59,131 Created temporary directory: /tmp/pip-unpack-s0_37ezd
2024-03-27T10:51:59,132 Created temporary directory: /tmp/pip-unpack-kosu0oru
2024-03-27T10:51:59,140 Building wheels for collected packages: moleculekit
2024-03-27T10:51:59,146   Created temporary directory: /tmp/pip-wheel-o_1ullrx
2024-03-27T10:51:59,146   Destination directory: /tmp/pip-wheel-o_1ullrx
2024-03-27T10:51:59,149   Building wheel for moleculekit (pyproject.toml): started
2024-03-27T10:51:59,150   Running command Building wheel for moleculekit (pyproject.toml)
2024-03-27T10:52:01,423   running bdist_wheel
2024-03-27T10:52:01,437   running build
2024-03-27T10:52:01,438   running build_py
2024-03-27T10:52:01,444   creating build
2024-03-27T10:52:01,445   creating build/lib.linux-armv7l-cpython-311
2024-03-27T10:52:01,445   creating build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,447   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,452   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,454   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,457   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,458   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,460   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,462   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,467   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,470   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,472   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,475   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,477   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,479   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,480   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,482   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,484   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,486   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,488   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,490   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,492   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,494   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:01,497   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T10:52:01,498   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T10:52:01,500   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T10:52:01,504   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2024-03-27T10:52:01,508   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-03-27T10:52:01,509   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2024-03-27T10:52:01,512   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T10:52:01,513   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T10:52:01,514   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T10:52:01,518   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T10:52:01,525   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T10:52:01,526   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T10:52:01,528   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T10:52:01,531   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,532   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,534   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,536   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,538   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,541   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,544   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2024-03-27T10:52:01,547   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T10:52:01,548   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T10:52:01,549   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T10:52:01,551   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T10:52:01,553   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2024-03-27T10:52:01,557   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,558   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,560   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,562   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,564   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,566   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,568   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,571   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,573   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,576   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,578   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,580   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,583   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,585   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,588   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,591   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2024-03-27T10:52:01,594   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,596   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,598   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,600   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,602   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,605   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,609   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,612   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,615   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,617   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,619   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,622   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,625   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,627   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,630   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2024-03-27T10:52:01,633   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-27T10:52:01,634   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-27T10:52:01,636   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2024-03-27T10:52:01,639   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T10:52:01,640   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T10:52:01,643   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T10:52:01,645   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T10:52:01,648   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2024-03-27T10:52:01,652   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T10:52:01,653   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T10:52:01,656   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T10:52:01,657   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T10:52:01,660   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2024-03-27T10:52:01,662   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T10:52:01,663   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T10:52:01,665   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T10:52:01,667   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T10:52:01,669   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2024-03-27T10:52:01,673   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-27T10:52:01,674   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-27T10:52:01,678   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2024-03-27T10:52:01,681   running egg_info
2024-03-27T10:52:01,690   writing moleculekit.egg-info/PKG-INFO
2024-03-27T10:52:01,694   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-03-27T10:52:01,696   writing requirements to moleculekit.egg-info/requires.txt
2024-03-27T10:52:01,698   writing top-level names to moleculekit.egg-info/top_level.txt
2024-03-27T10:52:01,717   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,718   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,718   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,719   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,720   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,720   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,721   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,721   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,722   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,723   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,724   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,724   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,725   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,725   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,726   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,726   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,727   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,727   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,728   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,728   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,729   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,730   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,731   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,731   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,732   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,732   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,733   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,733   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,734   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,734   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,735   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,735   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,736   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,736   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,737   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,737   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,738   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,738   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,739   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,740   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,740   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,740   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,741   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,741   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,742   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,742   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,743   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,743   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,744   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,744   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,745   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,745   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,746   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,746   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,747   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,747   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,748   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,748   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,749   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,750   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,750   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,751   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,751   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,751   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,752   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,752   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,753   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,753   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,754   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,754   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,755   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,755   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,756   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,756   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,757   dependency /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-03-27T10:52:01,757   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T10:52:01,758   reading manifest template 'MANIFEST.in'
2024-03-27T10:52:02,046   no previously-included directories found matching 'moleculekit/test-data'
2024-03-27T10:52:02,047   no previously-included directories found matching 'moleculekit/tests'
2024-03-27T10:52:02,048   no previously-included directories found matching 'package'
2024-03-27T10:52:02,049   adding license file 'LICENSE'
2024-03-27T10:52:02,064   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-03-27T10:52:02,073   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-03-27T10:52:02,074   !!

2024-03-27T10:52:02,076           ********************************************************************************
2024-03-27T10:52:02,076           ############################
2024-03-27T10:52:02,077           # Package would be ignored #
2024-03-27T10:52:02,077           ############################
2024-03-27T10:52:02,077           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-03-27T10:52:02,078           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,079           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,079           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-03-27T10:52:02,080           to the `packages` configuration field.

2024-03-27T10:52:02,081           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,081           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,082           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,083           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,084           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,085           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-03-27T10:52:02,085           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-03-27T10:52:02,086           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,087           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,087           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,088           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,089           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,090           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,091                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,091                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,092                 directory, all directories are treated like packages.
2024-03-27T10:52:02,092           ********************************************************************************

2024-03-27T10:52:02,093   !!
2024-03-27T10:52:02,093     check.warn(importable)
2024-03-27T10:52:02,094   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-03-27T10:52:02,094   !!

2024-03-27T10:52:02,096           ********************************************************************************
2024-03-27T10:52:02,096           ############################
2024-03-27T10:52:02,097           # Package would be ignored #
2024-03-27T10:52:02,097           ############################
2024-03-27T10:52:02,098           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-03-27T10:52:02,098           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,099           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,100           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-03-27T10:52:02,100           to the `packages` configuration field.

2024-03-27T10:52:02,101           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,101           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,101           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,102           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,103           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,103           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-03-27T10:52:02,104           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-03-27T10:52:02,104           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,104           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,105           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,105           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,106           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,107           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,108                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,108                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,109                 directory, all directories are treated like packages.
2024-03-27T10:52:02,110           ********************************************************************************

2024-03-27T10:52:02,111   !!
2024-03-27T10:52:02,111     check.warn(importable)
2024-03-27T10:52:02,112   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-03-27T10:52:02,112   !!

2024-03-27T10:52:02,113           ********************************************************************************
2024-03-27T10:52:02,114           ############################
2024-03-27T10:52:02,114           # Package would be ignored #
2024-03-27T10:52:02,115           ############################
2024-03-27T10:52:02,115           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-03-27T10:52:02,116           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,117           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,117           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-03-27T10:52:02,118           to the `packages` configuration field.

2024-03-27T10:52:02,119           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,119           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,120           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,121           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,122           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,124           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-03-27T10:52:02,124           already explicitly excluding 'moleculekit.cython_utils' via
2024-03-27T10:52:02,125           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,125           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,126           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,127           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,128           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,129           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,130                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,130                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,131                 directory, all directories are treated like packages.
2024-03-27T10:52:02,131           ********************************************************************************

2024-03-27T10:52:02,132   !!
2024-03-27T10:52:02,132     check.warn(importable)
2024-03-27T10:52:02,132   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-03-27T10:52:02,133   !!

2024-03-27T10:52:02,134           ********************************************************************************
2024-03-27T10:52:02,134           ############################
2024-03-27T10:52:02,134           # Package would be ignored #
2024-03-27T10:52:02,135           ############################
2024-03-27T10:52:02,135           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-03-27T10:52:02,136           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,137           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,137           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-03-27T10:52:02,137           to the `packages` configuration field.

2024-03-27T10:52:02,138           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,139           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,139           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,140           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,141           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,142           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-03-27T10:52:02,142           already explicitly excluding 'moleculekit.distance_utils' via
2024-03-27T10:52:02,143           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,143           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,144           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,145           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,146           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,147           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,147                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,148                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,148                 directory, all directories are treated like packages.
2024-03-27T10:52:02,149           ********************************************************************************

2024-03-27T10:52:02,150   !!
2024-03-27T10:52:02,151     check.warn(importable)
2024-03-27T10:52:02,151   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-03-27T10:52:02,152   !!

2024-03-27T10:52:02,153           ********************************************************************************
2024-03-27T10:52:02,153           ############################
2024-03-27T10:52:02,154           # Package would be ignored #
2024-03-27T10:52:02,154           ############################
2024-03-27T10:52:02,155           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-03-27T10:52:02,155           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,155           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,156           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-03-27T10:52:02,156           to the `packages` configuration field.

2024-03-27T10:52:02,157           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,157           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,158           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,158           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,159           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,160           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-03-27T10:52:02,160           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-03-27T10:52:02,161           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,161           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,162           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,163           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,164           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,165           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,166                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,166                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,167                 directory, all directories are treated like packages.
2024-03-27T10:52:02,168           ********************************************************************************

2024-03-27T10:52:02,169   !!
2024-03-27T10:52:02,169     check.warn(importable)
2024-03-27T10:52:02,170   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-03-27T10:52:02,170   !!

2024-03-27T10:52:02,171           ********************************************************************************
2024-03-27T10:52:02,172           ############################
2024-03-27T10:52:02,172           # Package would be ignored #
2024-03-27T10:52:02,173           ############################
2024-03-27T10:52:02,173           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-03-27T10:52:02,174           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,175           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,175           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-03-27T10:52:02,176           to the `packages` configuration field.

2024-03-27T10:52:02,177           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,177           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,178           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,179           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,180           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,181           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-03-27T10:52:02,182           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-03-27T10:52:02,182           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,182           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,183           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,183           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,184           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,185           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,186                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,186                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,186                 directory, all directories are treated like packages.
2024-03-27T10:52:02,187           ********************************************************************************

2024-03-27T10:52:02,187   !!
2024-03-27T10:52:02,188     check.warn(importable)
2024-03-27T10:52:02,188   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-03-27T10:52:02,189   !!

2024-03-27T10:52:02,190           ********************************************************************************
2024-03-27T10:52:02,190           ############################
2024-03-27T10:52:02,191           # Package would be ignored #
2024-03-27T10:52:02,191           ############################
2024-03-27T10:52:02,191           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-03-27T10:52:02,192           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,193           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,193           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-03-27T10:52:02,194           to the `packages` configuration field.

2024-03-27T10:52:02,194           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,195           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,196           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,196           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,197           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,198           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-03-27T10:52:02,199           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-03-27T10:52:02,199           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,200           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,200           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,202           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,203           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,204           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,204                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,205                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,205                 directory, all directories are treated like packages.
2024-03-27T10:52:02,206           ********************************************************************************

2024-03-27T10:52:02,207   !!
2024-03-27T10:52:02,207     check.warn(importable)
2024-03-27T10:52:02,207   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-03-27T10:52:02,208   !!

2024-03-27T10:52:02,208           ********************************************************************************
2024-03-27T10:52:02,209           ############################
2024-03-27T10:52:02,209           # Package would be ignored #
2024-03-27T10:52:02,209           ############################
2024-03-27T10:52:02,210           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-03-27T10:52:02,210           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,211           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,211           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-03-27T10:52:02,211           to the `packages` configuration field.

2024-03-27T10:52:02,212           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,213           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,213           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,214           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,215           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,216           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-03-27T10:52:02,217           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-03-27T10:52:02,217           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,218           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,218           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,219           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,220           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,222           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,223                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,223                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,224                 directory, all directories are treated like packages.
2024-03-27T10:52:02,224           ********************************************************************************

2024-03-27T10:52:02,225   !!
2024-03-27T10:52:02,226     check.warn(importable)
2024-03-27T10:52:02,227   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-03-27T10:52:02,227   !!

2024-03-27T10:52:02,228           ********************************************************************************
2024-03-27T10:52:02,229           ############################
2024-03-27T10:52:02,229           # Package would be ignored #
2024-03-27T10:52:02,230           ############################
2024-03-27T10:52:02,230           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-03-27T10:52:02,231           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,232           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,233           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-03-27T10:52:02,233           to the `packages` configuration field.

2024-03-27T10:52:02,233           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,234           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,234           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,235           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,236           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,237           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-03-27T10:52:02,237           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-03-27T10:52:02,237           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,238           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,240           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,241           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,242           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,244           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,244                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,245                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,245                 directory, all directories are treated like packages.
2024-03-27T10:52:02,246           ********************************************************************************

2024-03-27T10:52:02,247   !!
2024-03-27T10:52:02,247     check.warn(importable)
2024-03-27T10:52:02,248   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-03-27T10:52:02,248   !!

2024-03-27T10:52:02,250           ********************************************************************************
2024-03-27T10:52:02,250           ############################
2024-03-27T10:52:02,251           # Package would be ignored #
2024-03-27T10:52:02,251           ############################
2024-03-27T10:52:02,252           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-03-27T10:52:02,252           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,253           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,254           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-03-27T10:52:02,254           to the `packages` configuration field.

2024-03-27T10:52:02,255           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,256           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,256           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,258           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,259           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,259           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-03-27T10:52:02,260           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-03-27T10:52:02,261           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,261           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,262           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,263           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,264           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,265           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,266                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,266                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,267                 directory, all directories are treated like packages.
2024-03-27T10:52:02,267           ********************************************************************************

2024-03-27T10:52:02,268   !!
2024-03-27T10:52:02,268     check.warn(importable)
2024-03-27T10:52:02,269   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-03-27T10:52:02,269   !!

2024-03-27T10:52:02,271           ********************************************************************************
2024-03-27T10:52:02,273           ############################
2024-03-27T10:52:02,281           # Package would be ignored #
2024-03-27T10:52:02,295           ############################
2024-03-27T10:52:02,296           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-03-27T10:52:02,296           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,298           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,299           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-03-27T10:52:02,299           to the `packages` configuration field.

2024-03-27T10:52:02,300           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,301           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,302           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,303           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,307           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,310           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-03-27T10:52:02,325           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-03-27T10:52:02,337           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,338           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,339           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,341           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,342           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,344           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,344                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,345                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,346                 directory, all directories are treated like packages.
2024-03-27T10:52:02,346           ********************************************************************************

2024-03-27T10:52:02,347   !!
2024-03-27T10:52:02,348     check.warn(importable)
2024-03-27T10:52:02,349   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-03-27T10:52:02,365   !!

2024-03-27T10:52:02,371           ********************************************************************************
2024-03-27T10:52:02,372           ############################
2024-03-27T10:52:02,372           # Package would be ignored #
2024-03-27T10:52:02,372           ############################
2024-03-27T10:52:02,373           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-03-27T10:52:02,373           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,374           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,375           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-03-27T10:52:02,375           to the `packages` configuration field.

2024-03-27T10:52:02,376           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,376           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,377           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,378           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,379           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,381           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-03-27T10:52:02,381           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-03-27T10:52:02,382           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,386           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,392           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,402           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,403           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,405                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,405                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,406                 directory, all directories are treated like packages.
2024-03-27T10:52:02,407           ********************************************************************************

2024-03-27T10:52:02,408   !!
2024-03-27T10:52:02,409     check.warn(importable)
2024-03-27T10:52:02,409   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-03-27T10:52:02,410   !!

2024-03-27T10:52:02,411           ********************************************************************************
2024-03-27T10:52:02,412           ############################
2024-03-27T10:52:02,412           # Package would be ignored #
2024-03-27T10:52:02,414           ############################
2024-03-27T10:52:02,416           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-03-27T10:52:02,419           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,429           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,430           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-03-27T10:52:02,430           to the `packages` configuration field.

2024-03-27T10:52:02,432           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,433           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,433           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,435           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,436           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,437           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-03-27T10:52:02,438           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-03-27T10:52:02,438           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,439           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,439           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,440           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,441           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,442           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,443                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,443                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,444                 directory, all directories are treated like packages.
2024-03-27T10:52:02,444           ********************************************************************************

2024-03-27T10:52:02,451   !!
2024-03-27T10:52:02,452     check.warn(importable)
2024-03-27T10:52:02,453   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-03-27T10:52:02,453   !!

2024-03-27T10:52:02,454           ********************************************************************************
2024-03-27T10:52:02,455           ############################
2024-03-27T10:52:02,456           # Package would be ignored #
2024-03-27T10:52:02,456           ############################
2024-03-27T10:52:02,457           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-03-27T10:52:02,458           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,459           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,460           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-03-27T10:52:02,461           to the `packages` configuration field.

2024-03-27T10:52:02,462           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,463           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,463           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,464           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,466           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,467           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-03-27T10:52:02,467           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-03-27T10:52:02,468           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,469           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,469           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,470           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,472           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,474           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,475                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,476                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,476                 directory, all directories are treated like packages.
2024-03-27T10:52:02,477           ********************************************************************************

2024-03-27T10:52:02,478   !!
2024-03-27T10:52:02,478     check.warn(importable)
2024-03-27T10:52:02,479   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-03-27T10:52:02,479   !!

2024-03-27T10:52:02,480           ********************************************************************************
2024-03-27T10:52:02,481           ############################
2024-03-27T10:52:02,481           # Package would be ignored #
2024-03-27T10:52:02,482           ############################
2024-03-27T10:52:02,482           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-03-27T10:52:02,483           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,484           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,484           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-03-27T10:52:02,485           to the `packages` configuration field.

2024-03-27T10:52:02,486           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,486           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,487           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,488           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,490           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,491           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-03-27T10:52:02,491           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-03-27T10:52:02,492           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,493           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,493           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,495           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,496           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,498           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,499                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,499                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,500                 directory, all directories are treated like packages.
2024-03-27T10:52:02,502           ********************************************************************************

2024-03-27T10:52:02,530   !!
2024-03-27T10:52:02,551     check.warn(importable)
2024-03-27T10:52:02,624   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-03-27T10:52:02,659   !!

2024-03-27T10:52:02,730           ********************************************************************************
2024-03-27T10:52:02,762           ############################
2024-03-27T10:52:02,833           # Package would be ignored #
2024-03-27T10:52:02,834           ############################
2024-03-27T10:52:02,834           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-03-27T10:52:02,835           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,836           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,837           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-03-27T10:52:02,837           to the `packages` configuration field.

2024-03-27T10:52:02,838           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,839           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,839           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,840           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,841           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,843           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-03-27T10:52:02,843           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-03-27T10:52:02,844           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,844           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,845           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,847           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,848           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,850           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,850                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,851                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,852                 directory, all directories are treated like packages.
2024-03-27T10:52:02,853           ********************************************************************************

2024-03-27T10:52:02,854   !!
2024-03-27T10:52:02,855     check.warn(importable)
2024-03-27T10:52:02,856   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-03-27T10:52:02,857   !!

2024-03-27T10:52:02,859           ********************************************************************************
2024-03-27T10:52:02,860           ############################
2024-03-27T10:52:02,861           # Package would be ignored #
2024-03-27T10:52:02,861           ############################
2024-03-27T10:52:02,862           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-03-27T10:52:02,863           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,865           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,867           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-03-27T10:52:02,868           to the `packages` configuration field.

2024-03-27T10:52:02,870           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,871           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,872           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,874           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,876           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,878           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-03-27T10:52:02,879           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-03-27T10:52:02,879           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,881           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,881           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,882           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,883           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,885           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,885                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,886                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,886                 directory, all directories are treated like packages.
2024-03-27T10:52:02,887           ********************************************************************************

2024-03-27T10:52:02,888   !!
2024-03-27T10:52:02,888     check.warn(importable)
2024-03-27T10:52:02,889   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-03-27T10:52:02,890   !!

2024-03-27T10:52:02,891           ********************************************************************************
2024-03-27T10:52:02,891           ############################
2024-03-27T10:52:02,892           # Package would be ignored #
2024-03-27T10:52:02,892           ############################
2024-03-27T10:52:02,893           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-03-27T10:52:02,893           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,895           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,895           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-03-27T10:52:02,896           to the `packages` configuration field.

2024-03-27T10:52:02,897           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,897           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,898           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,899           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,900           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,901           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-03-27T10:52:02,902           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-03-27T10:52:02,902           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,903           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,903           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,904           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,906           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,907           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,908                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,908                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,909                 directory, all directories are treated like packages.
2024-03-27T10:52:02,910           ********************************************************************************

2024-03-27T10:52:02,911   !!
2024-03-27T10:52:02,912     check.warn(importable)
2024-03-27T10:52:02,912   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-03-27T10:52:02,913   !!

2024-03-27T10:52:02,914           ********************************************************************************
2024-03-27T10:52:02,915           ############################
2024-03-27T10:52:02,915           # Package would be ignored #
2024-03-27T10:52:02,915           ############################
2024-03-27T10:52:02,916           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-03-27T10:52:02,916           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,917           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,918           package, please make sure that 'moleculekit.share' is explicitly added
2024-03-27T10:52:02,919           to the `packages` configuration field.

2024-03-27T10:52:02,920           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,920           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,921           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,922           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,923           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,924           If you don't want 'moleculekit.share' to be distributed and are
2024-03-27T10:52:02,925           already explicitly excluding 'moleculekit.share' via
2024-03-27T10:52:02,925           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,926           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,926           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,927           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,928           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,930           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,930                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,931                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,931                 directory, all directories are treated like packages.
2024-03-27T10:52:02,932           ********************************************************************************

2024-03-27T10:52:02,933   !!
2024-03-27T10:52:02,934     check.warn(importable)
2024-03-27T10:52:02,934   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-03-27T10:52:02,935   !!

2024-03-27T10:52:02,936           ********************************************************************************
2024-03-27T10:52:02,936           ############################
2024-03-27T10:52:02,937           # Package would be ignored #
2024-03-27T10:52:02,938           ############################
2024-03-27T10:52:02,938           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-03-27T10:52:02,939           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,940           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,941           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-03-27T10:52:02,941           to the `packages` configuration field.

2024-03-27T10:52:02,942           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,943           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,944           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,945           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,946           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,947           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-03-27T10:52:02,947           already explicitly excluding 'moleculekit.share.atomselect' via
2024-03-27T10:52:02,948           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,948           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,949           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,950           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,951           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,952           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,953                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,954                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,954                 directory, all directories are treated like packages.
2024-03-27T10:52:02,955           ********************************************************************************

2024-03-27T10:52:02,956   !!
2024-03-27T10:52:02,956     check.warn(importable)
2024-03-27T10:52:02,957   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-03-27T10:52:02,957   !!

2024-03-27T10:52:02,958           ********************************************************************************
2024-03-27T10:52:02,959           ############################
2024-03-27T10:52:02,960           # Package would be ignored #
2024-03-27T10:52:02,960           ############################
2024-03-27T10:52:02,961           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-03-27T10:52:02,962           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,963           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,963           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-03-27T10:52:02,964           to the `packages` configuration field.

2024-03-27T10:52:02,965           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,966           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,966           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,967           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,969           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,970           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-03-27T10:52:02,971           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-03-27T10:52:02,971           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,972           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,972           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,974           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,975           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:02,977           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:02,977                 even if it does not contain any `.py` files.
2024-03-27T10:52:02,978                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:02,979                 directory, all directories are treated like packages.
2024-03-27T10:52:02,979           ********************************************************************************

2024-03-27T10:52:02,981   !!
2024-03-27T10:52:02,981     check.warn(importable)
2024-03-27T10:52:02,982   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-03-27T10:52:02,982   !!

2024-03-27T10:52:02,983           ********************************************************************************
2024-03-27T10:52:02,984           ############################
2024-03-27T10:52:02,984           # Package would be ignored #
2024-03-27T10:52:02,985           ############################
2024-03-27T10:52:02,985           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-03-27T10:52:02,986           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:02,987           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:02,988           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-03-27T10:52:02,988           to the `packages` configuration field.

2024-03-27T10:52:02,990           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:02,990           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:02,991           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:02,992           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:02,993           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:02,994           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-03-27T10:52:02,995           already explicitly excluding 'moleculekit.tmalign' via
2024-03-27T10:52:02,995           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:02,996           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:02,996           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:02,997           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:02,998           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:03,000           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:03,000                 even if it does not contain any `.py` files.
2024-03-27T10:52:03,001                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:03,001                 directory, all directories are treated like packages.
2024-03-27T10:52:03,002           ********************************************************************************

2024-03-27T10:52:03,003   !!
2024-03-27T10:52:03,003     check.warn(importable)
2024-03-27T10:52:03,004   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-03-27T10:52:03,004   !!

2024-03-27T10:52:03,006           ********************************************************************************
2024-03-27T10:52:03,006           ############################
2024-03-27T10:52:03,007           # Package would be ignored #
2024-03-27T10:52:03,008           ############################
2024-03-27T10:52:03,008           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-03-27T10:52:03,009           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:03,010           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:03,011           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-03-27T10:52:03,012           to the `packages` configuration field.

2024-03-27T10:52:03,013           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:03,013           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:03,014           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:03,015           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:03,016           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:03,017           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-03-27T10:52:03,017           already explicitly excluding 'moleculekit.tmalign.include' via
2024-03-27T10:52:03,018           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:03,018           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:03,019           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:03,020           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:03,021           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:03,022           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:03,023                 even if it does not contain any `.py` files.
2024-03-27T10:52:03,023                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:03,024                 directory, all directories are treated like packages.
2024-03-27T10:52:03,024           ********************************************************************************

2024-03-27T10:52:03,025   !!
2024-03-27T10:52:03,026     check.warn(importable)
2024-03-27T10:52:03,026   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-03-27T10:52:03,027   !!

2024-03-27T10:52:03,028           ********************************************************************************
2024-03-27T10:52:03,029           ############################
2024-03-27T10:52:03,029           # Package would be ignored #
2024-03-27T10:52:03,030           ############################
2024-03-27T10:52:03,030           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-03-27T10:52:03,031           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:03,032           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:03,033           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-03-27T10:52:03,033           to the `packages` configuration field.

2024-03-27T10:52:03,035           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:03,035           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:03,036           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:03,037           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:03,038           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:03,040           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-03-27T10:52:03,040           already explicitly excluding 'moleculekit.tmalign.src' via
2024-03-27T10:52:03,041           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:03,042           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:03,042           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:03,044           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:03,045           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:03,046           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:03,047                 even if it does not contain any `.py` files.
2024-03-27T10:52:03,048                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:03,049                 directory, all directories are treated like packages.
2024-03-27T10:52:03,050           ********************************************************************************

2024-03-27T10:52:03,051   !!
2024-03-27T10:52:03,052     check.warn(importable)
2024-03-27T10:52:03,053   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-03-27T10:52:03,053   !!

2024-03-27T10:52:03,054           ********************************************************************************
2024-03-27T10:52:03,055           ############################
2024-03-27T10:52:03,055           # Package would be ignored #
2024-03-27T10:52:03,056           ############################
2024-03-27T10:52:03,056           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-03-27T10:52:03,057           but it is absent from setuptools' `packages` configuration.

2024-03-27T10:52:03,058           This leads to an ambiguous overall configuration. If you want to distribute this
2024-03-27T10:52:03,059           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-03-27T10:52:03,059           to the `packages` configuration field.

2024-03-27T10:52:03,060           Alternatively, you can also rely on setuptools' discovery methods
2024-03-27T10:52:03,061           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-03-27T10:52:03,061           instead of `find_packages(...)`/`find:`).

2024-03-27T10:52:03,063           You can read more about "package discovery" on setuptools documentation page:

2024-03-27T10:52:03,064           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-03-27T10:52:03,065           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-03-27T10:52:03,066           already explicitly excluding 'moleculekit.wrapping' via
2024-03-27T10:52:03,066           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-03-27T10:52:03,067           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-03-27T10:52:03,067           combination with a more fine grained `package-data` configuration.

2024-03-27T10:52:03,069           You can read more about "package data files" on setuptools documentation page:

2024-03-27T10:52:03,070           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-03-27T10:52:03,072           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-03-27T10:52:03,072                 even if it does not contain any `.py` files.
2024-03-27T10:52:03,073                 On the other hand, currently there is no concept of package data
2024-03-27T10:52:03,073                 directory, all directories are treated like packages.
2024-03-27T10:52:03,074           ********************************************************************************

2024-03-27T10:52:03,075   !!
2024-03-27T10:52:03,076     check.warn(importable)
2024-03-27T10:52:03,076   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:03,077   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:03,077   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T10:52:03,078   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T10:52:03,079   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T10:52:03,080   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T10:52:03,081   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T10:52:03,082   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T10:52:03,083   creating build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T10:52:03,084   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T10:52:03,085   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T10:52:03,086   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T10:52:03,086   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T10:52:03,087   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T10:52:03,087   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T10:52:03,088   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T10:52:03,088   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T10:52:03,089   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T10:52:03,090   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T10:52:03,090   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T10:52:03,091   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2024-03-27T10:52:03,091   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-03-27T10:52:03,092   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2024-03-27T10:52:03,092   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2024-03-27T10:52:03,093   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,093   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,094   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,095   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,095   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,096   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,096   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,097   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,097   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,098   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,098   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,099   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,100   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,100   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,101   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,101   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,102   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,102   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,103   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,103   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,104   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,104   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,105   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,105   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,106   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,106   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,107   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,107   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,108   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,108   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,109   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,109   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,110   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,110   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,111   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,111   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,112   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,112   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,113   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,114   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,115   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,115   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,115   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,116   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,116   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,117   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,117   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,118   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,118   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,119   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,119   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,120   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,120   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,121   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,121   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,122   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,123   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,123   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,124   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,124   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,124   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,125   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,125   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,126   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,127   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,128   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,129   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,129   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,130   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,130   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,131   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,131   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,132   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,132   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,133   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,133   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,133   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,134   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,134   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,135   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,135   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,136   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,137   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,137   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,138   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,138   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,139   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,139   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,140   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,141   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,142   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,142   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,143   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,144   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,144   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,145   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,146   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,147   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,151   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,155   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,161   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,165   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,168   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,171   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,174   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,176   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,178   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,180   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,183   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,185   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,188   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,191   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,193   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,195   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,198   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,200   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,203   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,205   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,207   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,209   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,211   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,213   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,215   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,217   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,219   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,221   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,223   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,226   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,228   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,230   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,232   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,234   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,237   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,239   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,242   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,244   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,247   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,249   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,251   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,254   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,257   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,259   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,261   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,263   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,265   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,269   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,273   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,276   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,279   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,282   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,284   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,287   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,291   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,293   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,296   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,299   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,303   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,305   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,308   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,311   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,314   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,316   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,319   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,322   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,325   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,328   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,330   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,333   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,336   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,339   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,342   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,345   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,348   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,351   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,354   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,357   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2024-03-27T10:52:03,360   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T10:52:03,361   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T10:52:03,404   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T10:52:03,407   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T10:52:03,409   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-03-27T10:52:03,410   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2024-03-27T10:52:03,413   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-27T10:52:03,414   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-27T10:52:03,421   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T10:52:03,422   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T10:52:03,451   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T10:52:03,453   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T10:52:03,454   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T10:52:03,470   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T10:52:03,473   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T10:52:03,475   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T10:52:03,476   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T10:52:03,479   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T10:52:03,481   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2024-03-27T10:52:03,485   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-27T10:52:03,486   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-27T10:52:03,489   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T10:52:03,490   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T10:52:03,547   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T10:52:03,549   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T10:52:03,552   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T10:52:03,553   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T10:52:03,555   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T10:52:03,558   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T10:52:03,561   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T10:52:03,563   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2024-03-27T10:52:03,567   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-27T10:52:03,568   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-27T10:52:03,572   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,574   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,833   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,838   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,840   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,842   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,874   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,876   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:52:03,878   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,879   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,882   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,884   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,887   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,889   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,892   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2024-03-27T10:52:03,895   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:52:03,896   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:52:03,899   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:52:03,904   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:52:03,908   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:52:03,911   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:52:03,914   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T10:52:03,916   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T10:52:03,945   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T10:52:03,948   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T10:52:03,949   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T10:52:04,029   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T10:52:04,032   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T10:52:04,034   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T10:52:04,064   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T10:52:04,067   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T10:52:04,068   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T10:52:04,094   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T10:52:04,113   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-03-27T10:52:04,114   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.29'
2024-03-27T10:52:04,114   running build_ext
2024-03-27T10:52:04,131   building 'moleculekit.interactions.hbonds' extension
2024-03-27T10:52:04,132   creating build/temp.linux-armv7l-cpython-311
2024-03-27T10:52:04,133   creating build/temp.linux-armv7l-cpython-311/moleculekit
2024-03-27T10:52:04,134   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2024-03-27T10:52:04,135   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2024-03-27T10:52:04,136   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2024-03-27T10:52:04,514   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:52:04,515                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:52:04,516                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:52:04,516                    from moleculekit/interactions/hbonds/hbonds.cpp:1235:
2024-03-27T10:52:04,517   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:52:04,517      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:52:04,518         |  ^~~~~~~
2024-03-27T10:52:31,982   In function ‘PyObject* __pyx_pf_11moleculekit_12interactions_6hbonds_calculate(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, float, float, bool, bool)’,
2024-03-27T10:52:31,983       inlined from ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/interactions/hbonds/hbonds.cpp:19959:68:
2024-03-27T10:52:31,983   moleculekit/interactions/hbonds/hbonds.cpp:20989:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:52:31,984   20989 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-03-27T10:52:31,985         |                                                    ^~~~~~~~~~~~~~~
2024-03-27T10:52:31,985   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-03-27T10:52:31,986   moleculekit/interactions/hbonds/hbonds.cpp:20002:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-03-27T10:52:31,987   20002 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-03-27T10:52:31,988         |                                                         ^~~~~~~~~~~~~~~
2024-03-27T10:52:35,266   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:52:35,581   building 'moleculekit.interactions.pipi' extension
2024-03-27T10:52:35,582   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2024-03-27T10:52:35,583   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2024-03-27T10:52:35,935   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:52:35,936                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:52:35,936                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:52:35,937                    from moleculekit/interactions/pipi/pipi.cpp:1235:
2024-03-27T10:52:35,938   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:52:35,938      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:52:35,939         |  ^~~~~~~
2024-03-27T10:53:09,290   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:53:09,662   building 'moleculekit.interactions.cationpi' extension
2024-03-27T10:53:09,663   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2024-03-27T10:53:09,663   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2024-03-27T10:53:09,990   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:53:09,991                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:53:09,992                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:53:09,992                    from moleculekit/interactions/cationpi/cationpi.cpp:1235:
2024-03-27T10:53:09,993   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:53:09,994      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:53:09,994         |  ^~~~~~~
2024-03-27T10:53:42,936   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:53:43,266   building 'moleculekit.interactions.sigmahole' extension
2024-03-27T10:53:43,267   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2024-03-27T10:53:43,268   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-03-27T10:53:43,586   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:53:43,586                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:53:43,587                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:53:43,588                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1235:
2024-03-27T10:53:43,588   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:53:43,589      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:53:43,589         |  ^~~~~~~
2024-03-27T10:54:15,970   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:54:16,297   building 'moleculekit.wrapping' extension
2024-03-27T10:54:16,298   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2024-03-27T10:54:16,299   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2024-03-27T10:54:16,629   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:54:16,630                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:54:16,631                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:54:16,631                    from moleculekit/wrapping/wrapping.cpp:1235:
2024-03-27T10:54:16,632   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:54:16,633      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:54:16,633         |  ^~~~~~~
2024-03-27T10:54:47,112   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:54:47,311   building 'moleculekit.bondguesser_utils' extension
2024-03-27T10:54:47,312   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2024-03-27T10:54:47,313   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-03-27T10:54:47,632   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:54:47,632                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:54:47,633                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:54:47,633                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1235:
2024-03-27T10:54:47,634   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:54:47,634      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:54:47,635         |  ^~~~~~~
2024-03-27T10:54:49,936   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-03-27T10:54:49,937   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-27T10:54:49,937   19771 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-27T10:54:49,938         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T10:54:49,939   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-27T10:54:49,940   19783 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-27T10:54:49,940         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T10:54:49,941   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19795:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-03-27T10:54:49,942   19795 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-03-27T10:54:49,943         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T10:54:49,943   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19834:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,944   19834 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T10:54:49,945         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,946   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19873:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,946   19873 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T10:54:49,948         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,948   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19912:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,949   19912 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,949         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,950   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,951   19951 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T10:54:49,951         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,952   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19957:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,953   19957 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T10:54:49,953         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,954   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19998:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,954   19998 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T10:54:49,955         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,955   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20004:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,956   20004 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,956         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,957   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20045:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,958   20045 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T10:54:49,958         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,959   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20051:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,960   20051 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,961         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,961   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20092:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,962   20092 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T10:54:49,963         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,964   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20145:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,965   20145 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,966         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,966   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20192:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,967   20192 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,967         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,968   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,969   20233 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T10:54:49,970         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,970   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20239:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,971   20239 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T10:54:49,971         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,972   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20245:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,973   20245 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,973         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,974   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20292:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,975   20292 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-03-27T10:54:49,976         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,976   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20298:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,977   20298 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,978         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,978   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,979   20339 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-03-27T10:54:49,980         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,980   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20351:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,981   20351 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,982         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,983   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20404:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-03-27T10:54:49,983   20404 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-03-27T10:54:49,984         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,994   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-03-27T10:54:49,995   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21026:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:54:49,996   21026 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-03-27T10:54:49,996         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-03-27T10:54:49,997   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21063:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:54:49,998   21063 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-03-27T10:54:49,999         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-27T10:55:16,726   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:55:17,009   building 'moleculekit.atomselect_utils' extension
2024-03-27T10:55:17,009   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2024-03-27T10:55:17,010   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-03-27T10:55:17,332   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:55:17,332                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:55:17,333                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:55:17,333                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1252:
2024-03-27T10:55:17,334   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:55:17,335      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:55:17,335         |  ^~~~~~~
2024-03-27T10:55:19,866   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-03-27T10:55:19,867   moleculekit/atomselect_utils/atomselect_utils.cpp:23225:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:55:19,868   23225 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-03-27T10:55:19,869         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-03-27T10:55:19,874   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-27T10:55:19,875   moleculekit/atomselect_utils/atomselect_utils.cpp:23477:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:55:19,875   23477 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-27T10:55:19,876         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T10:55:19,882   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-03-27T10:55:19,882   moleculekit/atomselect_utils/atomselect_utils.cpp:23744:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:55:19,883   23744 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-03-27T10:55:19,884         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T10:55:54,370   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:55:54,696   building 'moleculekit.distance_utils' extension
2024-03-27T10:55:54,697   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2024-03-27T10:55:54,698   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2024-03-27T10:55:55,014   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:55:55,015                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:55:55,015                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:55:55,016                    from moleculekit/distance_utils/distance_utils.cpp:1235:
2024-03-27T10:55:55,017   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:55:55,017      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:55:55,018         |  ^~~~~~~
2024-03-27T10:55:57,439   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-03-27T10:55:57,440   moleculekit/distance_utils/distance_utils.cpp:21329:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:55:57,440   21329 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-03-27T10:55:57,441         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T10:55:57,441   moleculekit/distance_utils/distance_utils.cpp:21341:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:55:57,442   21341 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-03-27T10:55:57,443         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-03-27T10:56:35,330   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:56:35,642   building 'moleculekit.occupancy_utils' extension
2024-03-27T10:56:35,643   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2024-03-27T10:56:35,643   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-03-27T10:56:36,009   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:56:36,010                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:56:36,010                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:56:36,011                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1235:
2024-03-27T10:56:36,012   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:56:36,012      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:56:36,013         |  ^~~~~~~
2024-03-27T10:57:03,362   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:57:03,569   building 'moleculekit.cython_utils' extension
2024-03-27T10:57:03,570   creating build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils
2024-03-27T10:57:03,570   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -O3
2024-03-27T10:57:03,905   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:57:03,905                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:57:03,906                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:57:03,907                    from moleculekit/cython_utils/cython_utils.cpp:1235:
2024-03-27T10:57:03,907   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:57:03,908      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:57:03,909         |  ^~~~~~~
2024-03-27T10:57:34,372   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:57:34,730   building 'moleculekit.xtc' extension
2024-03-27T10:57:34,730   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2024-03-27T10:57:34,731   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2024-03-27T10:57:34,732   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2024-03-27T10:57:34,734   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-27T10:57:35,647   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,647      66 |         "OK",
2024-03-27T10:57:35,648         |         ^~~~
2024-03-27T10:57:35,649   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,649      67 |         "Header",
2024-03-27T10:57:35,650         |         ^~~~~~~~
2024-03-27T10:57:35,651   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,651      68 |         "String",
2024-03-27T10:57:35,652         |         ^~~~~~~~
2024-03-27T10:57:35,653   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,653      69 |         "Double",
2024-03-27T10:57:35,654         |         ^~~~~~~~
2024-03-27T10:57:35,655   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,656      70 |         "Integer",
2024-03-27T10:57:35,657         |         ^~~~~~~~~
2024-03-27T10:57:35,657   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,658      71 |         "Float",
2024-03-27T10:57:35,659         |         ^~~~~~~
2024-03-27T10:57:35,660   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,661      72 |         "Unsigned integer",
2024-03-27T10:57:35,661         |         ^~~~~~~~~~~~~~~~~~
2024-03-27T10:57:35,662   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,663      73 |         "Compressed 3D coordinate",
2024-03-27T10:57:35,663         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:57:35,664   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,665      74 |         "Closing file",
2024-03-27T10:57:35,665         |         ^~~~~~~~~~~~~~
2024-03-27T10:57:35,666   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,667      75 |         "Magic number",
2024-03-27T10:57:35,668         |         ^~~~~~~~~~~~~~
2024-03-27T10:57:35,669   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,669      76 |         "Not enough memory",
2024-03-27T10:57:35,671         |         ^~~~~~~~~~~~~~~~~~~
2024-03-27T10:57:35,671   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,672      77 |         "End of file",
2024-03-27T10:57:35,673         |         ^~~~~~~~~~~~~
2024-03-27T10:57:35,673   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:57:35,674      78 |         "File not found"
2024-03-27T10:57:35,674         |         ^~~~~~~~~~~~~~~~
2024-03-27T10:57:35,675   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-27T10:57:35,676   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,677     459 |     while (size >= num && num_of_bits < 32)
2024-03-27T10:57:35,677         |            ~~~~~^~~~~~
2024-03-27T10:57:35,678   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-27T10:57:35,678   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,679     505 |     while (bytes[num_of_bytes] >= num)
2024-03-27T10:57:35,680         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T10:57:35,680   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-27T10:57:35,681   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,681     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-27T10:57:35,682         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-27T10:57:35,683   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,683     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-03-27T10:57:35,684         |                             ~~^~~~~~~~~~~~~~
2024-03-27T10:57:35,685   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,685     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-03-27T10:57:35,686         |                             ~~^~~~~~~~~~~~~~~~
2024-03-27T10:57:35,686   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-27T10:57:35,687   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,688     664 |                 if (lastbits < num_of_bits)
2024-03-27T10:57:35,688         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-03-27T10:57:35,689   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-27T10:57:35,690   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,690     785 |         if(size3>xfp->buf1size)
2024-03-27T10:57:35,691         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:57:35,692   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,692     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:57:35,693         |                          ^
2024-03-27T10:57:35,694   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,694     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:57:35,695         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:57:35,696   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,696     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:57:35,697         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:57:35,697   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,698     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:57:35,699         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:57:35,699   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,700     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:57:35,701         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:57:35,701   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,702     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:57:35,703         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:57:35,703   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,704     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:57:35,705         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:57:35,705   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:57:35,706     756 |         int smallidx,  minidx, maxidx;
2024-03-27T10:57:35,707         |                        ^~~~~~
2024-03-27T10:57:35,707   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:57:35,708     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T10:57:35,709         |                                ^~~~~~
2024-03-27T10:57:35,709   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T10:57:35,710     763 |         int errval=1;
2024-03-27T10:57:35,711         |             ^~~~~~
2024-03-27T10:57:35,711   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-27T10:57:35,712   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,713    1011 |         if(size3>xfp->buf1size)
2024-03-27T10:57:35,714         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:57:35,714   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,715    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T10:57:35,716         |                                 ~~~~~~~~^~~~~~~
2024-03-27T10:57:35,717   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,717    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T10:57:35,718         |                           ~~~~~~~~^~~~~~~
2024-03-27T10:57:35,718   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,719    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T10:57:35,719         |                           ~~~~~~~~^~~~~~~
2024-03-27T10:57:35,720   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,721    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-27T10:57:35,721         |                         ^
2024-03-27T10:57:35,722   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,723    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:57:35,723         |                          ^
2024-03-27T10:57:35,724   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,724    1275 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T10:57:35,725         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:57:35,726   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:57:35,726    1001 |         int errval;
2024-03-27T10:57:35,727         |             ^~~~~~
2024-03-27T10:57:35,727   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-27T10:57:35,728   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,729    1316 |         if(size3>xfp->buf1size)
2024-03-27T10:57:35,729         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:57:35,730   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,731    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:57:35,731         |                          ^
2024-03-27T10:57:35,732   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:57:35,733    1289 |         int smallidx,  maxidx, minidx;
2024-03-27T10:57:35,733         |                                ^~~~~~
2024-03-27T10:57:35,734   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:57:35,735    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T10:57:35,736         |                                ^~~~~~
2024-03-27T10:57:35,736   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T10:57:35,737    1297 |         int errval=1;
2024-03-27T10:57:35,738         |             ^~~~~~
2024-03-27T10:57:35,739   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-27T10:57:35,739   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,740    1513 |         if(size3>xfp->buf1size) {
2024-03-27T10:57:35,741         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:57:35,742   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,742    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-27T10:57:35,743         |                         ^
2024-03-27T10:57:35,744   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:57:35,744    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:57:35,745         |                          ^
2024-03-27T10:57:35,745   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:57:35,746    1743 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T10:57:35,747         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:57:35,748   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:57:35,748    1504 |         int errval=1;
2024-03-27T10:57:35,749         |             ^~~~~~
2024-03-27T10:57:38,845   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-03-27T10:57:39,126   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2024-03-27T10:57:39,960   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-03-27T10:57:39,961   moleculekit/fileformats/xtc/src/xtc.cpp:234:37: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:57:39,962     234 |                 for (aidx = 0; aidx < natoms; aidx++)
2024-03-27T10:57:39,963         |                                ~~~~~^~~~~~~~
2024-03-27T10:57:39,970   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-03-27T10:57:39,971   moleculekit/fileformats/xtc/src/xtc.cpp:436:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:57:39,971     436 |         for (f = 0; f < nframes; f++)
2024-03-27T10:57:39,972         |                     ~~^~~~~~~~~
2024-03-27T10:57:39,973   moleculekit/fileformats/xtc/src/xtc.cpp:451:31: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:57:39,974     451 |                 for (i = 0; i < natoms; i++)
2024-03-27T10:57:39,974         |                             ~~^~~~~~~~
2024-03-27T10:57:39,976   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-03-27T10:57:39,976   moleculekit/fileformats/xtc/src/xtc.cpp:541:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:57:39,977     541 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-03-27T10:57:39,978         |                                        ~~~~~^~~~~~~~
2024-03-27T10:57:39,980   moleculekit/fileformats/xtc/src/xtc.cpp:610:45: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-03-27T10:57:39,981     610 |                         for (aidx = 0; aidx < natoms; aidx++)
2024-03-27T10:57:39,982         |                                        ~~~~~^~~~~~~~
2024-03-27T10:57:40,919   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2024-03-27T10:57:41,252   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:57:41,253                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:57:41,253                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:57:41,254                    from moleculekit/fileformats/xtc/xtc.cpp:1239:
2024-03-27T10:57:41,254   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:57:41,255      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:57:41,256         |  ^~~~~~~
2024-03-27T10:58:06,036   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:58:06,390   building 'moleculekit.trr' extension
2024-03-27T10:58:06,391   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-03-27T10:58:06,532   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2024-03-27T10:58:07,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,177      66 |         "OK",
2024-03-27T10:58:07,178         |         ^~~~
2024-03-27T10:58:07,179   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,180      67 |         "Header",
2024-03-27T10:58:07,180         |         ^~~~~~~~
2024-03-27T10:58:07,181   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,182      68 |         "String",
2024-03-27T10:58:07,183         |         ^~~~~~~~
2024-03-27T10:58:07,183   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,184      69 |         "Double",
2024-03-27T10:58:07,184         |         ^~~~~~~~
2024-03-27T10:58:07,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,185      70 |         "Integer",
2024-03-27T10:58:07,186         |         ^~~~~~~~~
2024-03-27T10:58:07,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,187      71 |         "Float",
2024-03-27T10:58:07,188         |         ^~~~~~~
2024-03-27T10:58:07,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,189      72 |         "Unsigned integer",
2024-03-27T10:58:07,189         |         ^~~~~~~~~~~~~~~~~~
2024-03-27T10:58:07,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,190      73 |         "Compressed 3D coordinate",
2024-03-27T10:58:07,191         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:07,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,192      74 |         "Closing file",
2024-03-27T10:58:07,193         |         ^~~~~~~~~~~~~~
2024-03-27T10:58:07,194   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,195      75 |         "Magic number",
2024-03-27T10:58:07,195         |         ^~~~~~~~~~~~~~
2024-03-27T10:58:07,196   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,197      76 |         "Not enough memory",
2024-03-27T10:58:07,198         |         ^~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:07,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,199      77 |         "End of file",
2024-03-27T10:58:07,200         |         ^~~~~~~~~~~~~
2024-03-27T10:58:07,201   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-03-27T10:58:07,201      78 |         "File not found"
2024-03-27T10:58:07,202         |         ^~~~~~~~~~~~~~~~
2024-03-27T10:58:07,203   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-03-27T10:58:07,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,204     459 |     while (size >= num && num_of_bits < 32)
2024-03-27T10:58:07,205         |            ~~~~~^~~~~~
2024-03-27T10:58:07,206   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-03-27T10:58:07,206   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,207     505 |     while (bytes[num_of_bytes] >= num)
2024-03-27T10:58:07,208         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T10:58:07,209   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-03-27T10:58:07,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,210     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-03-27T10:58:07,211         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:07,211   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,212     616 |                 for (i = 0; i < num_of_bytes; i++)
2024-03-27T10:58:07,212         |                             ~~^~~~~~~~~~~~~~
2024-03-27T10:58:07,213   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,214     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2024-03-27T10:58:07,214         |                             ~~^~~~~~~~~~~~~~~~
2024-03-27T10:58:07,215   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-03-27T10:58:07,216   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,216     664 |                 if (lastbits < num_of_bits)
2024-03-27T10:58:07,217         |                     ~~~~~~~~~^~~~~~~~~~~~~
2024-03-27T10:58:07,218   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-03-27T10:58:07,219   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,219     785 |         if(size3>xfp->buf1size)
2024-03-27T10:58:07,220         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:58:07,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,222     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:58:07,222         |                          ^
2024-03-27T10:58:07,223   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,224     932 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:58:07,225         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:58:07,226   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,226     935 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:58:07,227         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:58:07,228   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,229     938 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:58:07,229         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:58:07,230   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,231     945 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:58:07,232         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:58:07,233   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,233     948 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:58:07,234         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:58:07,234   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,235     951 |                                 if(countmjh >= size3 ) { return -1; }
2024-03-27T10:58:07,235         |                                    ~~~~~~~~~^~~~~~~~
2024-03-27T10:58:07,236   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:58:07,237     756 |         int smallidx,  minidx, maxidx;
2024-03-27T10:58:07,237         |                        ^~~~~~
2024-03-27T10:58:07,238   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:58:07,238     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T10:58:07,239         |                                ^~~~~~
2024-03-27T10:58:07,240   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T10:58:07,240     763 |         int errval=1;
2024-03-27T10:58:07,241         |             ^~~~~~
2024-03-27T10:58:07,241   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-03-27T10:58:07,242   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,243    1011 |         if(size3>xfp->buf1size)
2024-03-27T10:58:07,244         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:58:07,244   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,245    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T10:58:07,246         |                                 ~~~~~~~~^~~~~~~
2024-03-27T10:58:07,246   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,247    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T10:58:07,248         |                           ~~~~~~~~^~~~~~~
2024-03-27T10:58:07,248   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,249    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2024-03-27T10:58:07,250         |                           ~~~~~~~~^~~~~~~
2024-03-27T10:58:07,250   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,251    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-03-27T10:58:07,252         |                         ^
2024-03-27T10:58:07,252   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,253    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:58:07,254         |                          ^
2024-03-27T10:58:07,255   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,255    1275 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T10:58:07,256         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:07,256   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:58:07,257    1001 |         int errval;
2024-03-27T10:58:07,258         |             ^~~~~~
2024-03-27T10:58:07,258   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-03-27T10:58:07,259   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,260    1316 |         if(size3>xfp->buf1size)
2024-03-27T10:58:07,260         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:58:07,261   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,261    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:58:07,262         |                          ^
2024-03-27T10:58:07,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:58:07,263    1289 |         int smallidx,  maxidx, minidx;
2024-03-27T10:58:07,264         |                                ^~~~~~
2024-03-27T10:58:07,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:58:07,265    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2024-03-27T10:58:07,266         |                                ^~~~~~
2024-03-27T10:58:07,266   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2024-03-27T10:58:07,267    1297 |         int errval=1;
2024-03-27T10:58:07,267         |             ^~~~~~
2024-03-27T10:58:07,268   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-03-27T10:58:07,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,269    1513 |         if(size3>xfp->buf1size) {
2024-03-27T10:58:07,270         |            ~~~~~^~~~~~~~~~~~~~
2024-03-27T10:58:07,271   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,271    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-03-27T10:58:07,272         |                         ^
2024-03-27T10:58:07,273   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:58:07,274    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-03-27T10:58:07,274         |                          ^
2024-03-27T10:58:07,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:58:07,275    1743 |         if(tmp==(unsigned int)buf2[0])
2024-03-27T10:58:07,276         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:07,277   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-03-27T10:58:07,277    1504 |         int errval=1;
2024-03-27T10:58:07,278         |             ^~~~~~
2024-03-27T10:58:10,204   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-03-27T10:58:11,205   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-03-27T10:58:11,206   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-27T10:58:11,207     111 |         if (slen != strlen(version)+1)
2024-03-27T10:58:11,208         |                  ^~
2024-03-27T10:58:11,209   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-03-27T10:58:11,210     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-03-27T10:58:11,211         |                                              ^~
2024-03-27T10:58:11,944   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2024-03-27T10:58:12,343   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:58:12,344                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:58:12,344                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:58:12,345                    from moleculekit/fileformats/xtc/trr.c:1231:
2024-03-27T10:58:12,345   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:58:12,346      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:58:12,347         |  ^~~~~~~
2024-03-27T10:58:13,137   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-03-27T10:58:13,152   moleculekit/fileformats/xtc/trr.c:16322:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-03-27T10:58:13,153   16322 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-03-27T10:58:13,154         |                                     ^~
2024-03-27T10:58:36,549   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-03-27T10:58:36,550   moleculekit/fileformats/xtc/trr.c:1133:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:36,551    1133 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-27T10:58:36,551         |                                        ^~~~~~~~~~~~~~~
2024-03-27T10:58:36,565   moleculekit/fileformats/xtc/trr.c:14230:7: note: ‘__pyx_v_status’ was declared here
2024-03-27T10:58:36,566   14230 |   int __pyx_v_status;
2024-03-27T10:58:36,567         |       ^~~~~~~~~~~~~~
2024-03-27T10:58:48,231   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-03-27T10:58:48,243   moleculekit/fileformats/xtc/trr.c:11529:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,244   11529 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-27T10:58:48,244         |                   ^
2024-03-27T10:58:48,253   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2024-03-27T10:58:48,254   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T10:58:48,254         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,264   moleculekit/fileformats/xtc/trr.c:11525:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,264   11525 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T10:58:48,265         |                   ^
2024-03-27T10:58:48,274   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2024-03-27T10:58:48,275   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T10:58:48,275         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,276   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,277    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-27T10:58:48,277         |                                                                                               ^
2024-03-27T10:58:48,286   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-03-27T10:58:48,287   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T10:58:48,287         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,297   moleculekit/fileformats/xtc/trr.c:11519:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,298   11519 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-03-27T10:58:48,299         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T10:58:48,310   moleculekit/fileformats/xtc/trr.c:10061:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2024-03-27T10:58:48,311   10061 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-03-27T10:58:48,312         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,320   moleculekit/fileformats/xtc/trr.c:11472:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,321   11472 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-03-27T10:58:48,322         |                   ^
2024-03-27T10:58:48,330   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2024-03-27T10:58:48,331   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T10:58:48,332         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,340   moleculekit/fileformats/xtc/trr.c:11468:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,341   11468 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T10:58:48,342         |                   ^
2024-03-27T10:58:48,350   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2024-03-27T10:58:48,351   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T10:58:48,352         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,353   moleculekit/fileformats/xtc/trr.c:2479:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,353    2479 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-03-27T10:58:48,354         |                                                                                               ^
2024-03-27T10:58:48,362   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-03-27T10:58:48,363   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T10:58:48,364         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,380   moleculekit/fileformats/xtc/trr.c:11462:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,381   11462 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-03-27T10:58:48,381         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-03-27T10:58:48,382   moleculekit/fileformats/xtc/trr.c:10077:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2024-03-27T10:58:48,383   10077 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-03-27T10:58:48,384         |                     ^~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,394   moleculekit/fileformats/xtc/trr.c:11861:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,394   11861 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T10:58:48,395         |                 ^
2024-03-27T10:58:48,404   moleculekit/fileformats/xtc/trr.c:10083:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2024-03-27T10:58:48,404   10083 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-03-27T10:58:48,405         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,415   moleculekit/fileformats/xtc/trr.c:11857:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,416   11857 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-27T10:58:48,416         |                 ^
2024-03-27T10:58:48,425   moleculekit/fileformats/xtc/trr.c:10083:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2024-03-27T10:58:48,426   10083 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2024-03-27T10:58:48,426         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,440   moleculekit/fileformats/xtc/trr.c:11702:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,441   11702 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T10:58:48,442         |                   ^
2024-03-27T10:58:48,446   moleculekit/fileformats/xtc/trr.c:10079:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2024-03-27T10:58:48,447   10079 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-03-27T10:58:48,447         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,457   moleculekit/fileformats/xtc/trr.c:11698:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,458   11698 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-27T10:58:48,459         |                   ^
2024-03-27T10:58:48,467   moleculekit/fileformats/xtc/trr.c:10079:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2024-03-27T10:58:48,468   10079 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2024-03-27T10:58:48,469         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,479   moleculekit/fileformats/xtc/trr.c:11754:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,479   11754 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-03-27T10:58:48,480         |                   ^
2024-03-27T10:58:48,490   moleculekit/fileformats/xtc/trr.c:10063:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2024-03-27T10:58:48,491   10063 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-03-27T10:58:48,491         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:48,500   moleculekit/fileformats/xtc/trr.c:11750:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:58:48,501   11750 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-03-27T10:58:48,501         |                   ^
2024-03-27T10:58:48,510   moleculekit/fileformats/xtc/trr.c:10063:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2024-03-27T10:58:48,511   10063 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2024-03-27T10:58:48,512         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-03-27T10:58:55,313   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:58:55,781   building 'moleculekit.dcd' extension
2024-03-27T10:58:55,782   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2024-03-27T10:58:55,783   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2024-03-27T10:58:55,785   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2024-03-27T10:58:56,245   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:58:56,246                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:58:56,247                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:58:56,247                    from moleculekit/fileformats/dcd/dcd.c:1226:
2024-03-27T10:58:56,248   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:58:56,249      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:58:56,249         |  ^~~~~~~
2024-03-27T10:58:57,551   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-03-27T10:58:57,556                    from moleculekit/fileformats/dcd/dcd.c:1232:
2024-03-27T10:58:57,557   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,563     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-27T10:58:57,570         |            ^~~~~~~~~~~~~
2024-03-27T10:58:57,571   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,572     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-27T10:58:57,573         |            ^~~~~~~~~~~~~~
2024-03-27T10:58:57,574   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,574     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-03-27T10:58:57,575         |            ^~~~~~~~~~~~~~~
2024-03-27T10:58:57,576   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,577     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-03-27T10:58:57,577         |                   ^~~~~~~~~
2024-03-27T10:58:57,578   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,579     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-03-27T10:58:57,580         |                   ^~~~~~~~~
2024-03-27T10:58:57,581   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,582     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-03-27T10:58:57,583         |                   ^~~~~~~~~
2024-03-27T10:58:57,586   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,591     394 | static int fio_fclose(fio_fd fd) {
2024-03-27T10:58:57,592         |            ^~~~~~~~~~
2024-03-27T10:58:57,597   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-03-27T10:58:57,598     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-03-27T10:58:57,599         |            ^~~~~~~~
2024-03-27T10:59:11,939   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-03-27T10:59:11,939   moleculekit/fileformats/dcd/dcd.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:59:11,940    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-27T10:59:11,941         |                                        ^~~~~~~~~~~~~~~
2024-03-27T10:59:11,947   moleculekit/fileformats/dcd/dcd.c:7992:7: note: ‘__pyx_v_i’ was declared here
2024-03-27T10:59:11,947    7992 |   int __pyx_v_i;
2024-03-27T10:59:11,948         |       ^~~~~~~~~
2024-03-27T10:59:15,442   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-03-27T10:59:16,346   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-03-27T10:59:16,347   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:59:16,348     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-27T10:59:16,349         |                                                       ^~
2024-03-27T10:59:16,349   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:59:16,350     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-03-27T10:59:16,352         |                                                      ^~
2024-03-27T10:59:16,352   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:59:16,353     194 |     if (input_integer[0] != dcdcordmagic)
2024-03-27T10:59:16,353         |                          ^~
2024-03-27T10:59:16,354   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:59:16,355     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-27T10:59:16,355         |                                               ^~
2024-03-27T10:59:16,356   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-03-27T10:59:16,356     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-03-27T10:59:16,357         |                                               ^~
2024-03-27T10:59:16,360   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-03-27T10:59:16,361   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:59:16,362     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-03-27T10:59:16,362         |                       ^~
2024-03-27T10:59:16,363   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-03-27T10:59:16,364     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-03-27T10:59:16,364         |                                                 ^~
2024-03-27T10:59:16,390   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-03-27T10:59:16,391   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2024-03-27T10:59:16,392   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-03-27T10:59:16,393      96 | static void swap2_aligned(void *v, long ndata) {
2024-03-27T10:59:16,394         |             ^~~~~~~~~~~~~
2024-03-27T10:59:16,394   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-03-27T10:59:16,395      32 | static void swap2_unaligned(void *v, long ndata) {
2024-03-27T10:59:16,396         |             ^~~~~~~~~~~~~~~
2024-03-27T10:59:16,396   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-03-27T10:59:16,397   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-03-27T10:59:16,398     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-03-27T10:59:16,398         |            ^~~~~~~~~~~~~
2024-03-27T10:59:16,399   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-03-27T10:59:16,400     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-03-27T10:59:16,400         |            ^~~~~~~~~~~~~~
2024-03-27T10:59:17,698   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:59:17,879   building 'moleculekit.binpos' extension
2024-03-27T10:59:17,880   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2024-03-27T10:59:17,881   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2024-03-27T10:59:17,883   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2024-03-27T10:59:18,295   In file included from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2024-03-27T10:59:18,295                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-03-27T10:59:18,296                    from /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-03-27T10:59:18,296                    from moleculekit/fileformats/binpos/binpos.c:1226:
2024-03-27T10:59:18,297   /tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-03-27T10:59:18,297      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-03-27T10:59:18,298         |  ^~~~~~~
2024-03-27T10:59:32,782   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2024-03-27T10:59:32,783       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7474:13:
2024-03-27T10:59:32,791   moleculekit/fileformats/binpos/binpos.c:8015:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:59:32,791    8015 |   if (__pyx_t_1) {
2024-03-27T10:59:32,792         |      ^
2024-03-27T10:59:32,792   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-03-27T10:59:32,799   moleculekit/fileformats/binpos/binpos.c:7492:7: note: ‘__pyx_v_status’ was declared here
2024-03-27T10:59:32,800    7492 |   int __pyx_v_status;
2024-03-27T10:59:32,800         |       ^~~~~~~~~~~~~~
2024-03-27T10:59:32,802   moleculekit/fileformats/binpos/binpos.c:1128:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2024-03-27T10:59:32,803    1128 |   #define PyInt_FromLong               PyLong_FromLong
2024-03-27T10:59:32,803         |                                        ^~~~~~~~~~~~~~~
2024-03-27T10:59:32,810   moleculekit/fileformats/binpos/binpos.c:7489:7: note: ‘__pyx_v_i’ was declared here
2024-03-27T10:59:32,811    7489 |   int __pyx_v_i;
2024-03-27T10:59:32,812         |       ^~~~~~~~~
2024-03-27T10:59:36,860   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2024-03-27T10:59:37,269   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2024-03-27T10:59:37,422   building 'moleculekit.tmalign' extension
2024-03-27T10:59:37,423   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2024-03-27T10:59:37,424   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2024-03-27T10:59:37,426   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2024-03-27T11:00:11,893   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-74_gb0cm/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2024-03-27T11:00:34,441   In file included from /usr/include/c++/12/vector:70,
2024-03-27T11:00:34,442                    from moleculekit/tmalign/tmalign_util.cpp:1250:
2024-03-27T11:00:34,442   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-03-27T11:00:34,443   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-03-27T11:00:34,444     439 |       vector<_Tp, _Alloc>::
2024-03-27T11:00:34,445         |       ^~~~~~~~~~~~~~~~~~~
2024-03-27T11:00:35,261   In file included from /usr/include/c++/12/vector:64:
2024-03-27T11:00:35,261   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-27T11:00:35,262       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20749:32,
2024-03-27T11:00:35,263       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20234:52:
2024-03-27T11:00:35,264   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-27T11:00:35,265    1287 |           _M_realloc_insert(end(), __x);
2024-03-27T11:00:35,265         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T11:00:35,266   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-27T11:00:35,267       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20763:33,
2024-03-27T11:00:35,267       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20234:52:
2024-03-27T11:00:35,268   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-27T11:00:35,269    1287 |           _M_realloc_insert(end(), __x);
2024-03-27T11:00:35,270         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T11:00:35,271   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2024-03-27T11:00:35,272       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20848:34,
2024-03-27T11:00:35,272       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20234:52:
2024-03-27T11:00:35,274   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-03-27T11:00:35,274    1287 |           _M_realloc_insert(end(), __x);
2024-03-27T11:00:35,275         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-03-27T11:00:38,336   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2024-03-27T11:00:38,760   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2024-03-27T11:00:38,760   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.29'
2024-03-27T11:00:38,761   installing to build/bdist.linux-armv7l/wheel
2024-03-27T11:00:38,761   running install
2024-03-27T11:00:38,784   running install_lib
2024-03-27T11:00:38,790   creating build/bdist.linux-armv7l
2024-03-27T11:00:38,791   creating build/bdist.linux-armv7l/wheel
2024-03-27T11:00:38,793   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,795   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T11:00:38,796   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T11:00:38,798   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T11:00:38,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-03-27T11:00:38,807   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-27T11:00:38,808   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-27T11:00:38,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-03-27T11:00:38,859   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,864   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,867   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-27T11:00:38,868   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-03-27T11:00:38,870   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-27T11:00:38,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-27T11:00:38,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-03-27T11:00:38,876   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T11:00:38,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T11:00:38,880   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T11:00:38,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T11:00:38,885   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-03-27T11:00:38,888   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T11:00:38,889   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T11:00:38,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T11:00:38,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T11:00:38,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-03-27T11:00:38,897   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,933   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:38,936   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T11:00:38,937   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T11:00:38,939   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T11:00:38,943   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:38,944   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:38,946   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:38,973   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:38,978   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T11:00:38,979   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T11:00:38,981   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T11:00:38,983   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T11:00:38,986   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T11:00:38,990   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-03-27T11:00:38,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:39,021   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:39,023   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:39,026   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,029   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,031   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,033   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,038   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-03-27T11:00:39,039   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-03-27T11:00:39,042   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T11:00:39,043   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T11:00:39,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T11:00:39,068   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-27T11:00:39,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-03-27T11:00:39,073   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-03-27T11:00:39,076   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T11:00:39,077   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T11:00:39,080   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T11:00:39,082   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T11:00:39,084   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T11:00:39,087   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-03-27T11:00:39,091   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T11:00:39,092   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T11:00:39,110   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-27T11:00:39,111   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-03-27T11:00:39,113   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T11:00:39,116   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-03-27T11:00:39,120   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T11:00:39,121   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T11:00:39,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T11:00:39,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-03-27T11:00:39,128   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-03-27T11:00:39,131   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T11:00:39,132   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T11:00:39,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T11:00:39,159   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-27T11:00:39,160   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-03-27T11:00:39,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-03-27T11:00:39,209   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-27T11:00:39,210   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-03-27T11:00:39,212   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:39,240   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-27T11:00:39,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-27T11:00:39,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-03-27T11:00:39,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:39,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:39,354   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-27T11:00:39,355   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-27T11:00:39,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-03-27T11:00:39,385   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:39,391   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,392   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,433   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,438   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-27T11:00:39,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-27T11:00:39,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-03-27T11:00:39,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,562   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-27T11:00:39,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-27T11:00:39,566   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-03-27T11:00:39,681   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-27T11:00:39,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-27T11:00:39,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-03-27T11:00:39,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-03-27T11:00:39,785   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-27T11:00:39,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-27T11:00:39,789   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-03-27T11:00:39,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:39,856   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T11:00:39,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T11:00:40,280   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T11:00:40,283   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-27T11:00:40,284   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-03-27T11:00:40,286   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-03-27T11:00:40,289   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-03-27T11:00:40,293   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,297   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,302   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,306   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,309   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,311   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,315   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,321   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,323   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,325   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,338   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,341   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,344   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,352   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,354   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,356   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,361   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,363   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,369   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,371   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,373   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,382   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,384   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,388   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,392   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,395   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,398   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,401   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,403   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,406   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,414   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,422   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,426   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,428   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,438   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,440   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,450   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,452   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,454   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,457   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,459   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,461   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,464   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,469   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,481   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,483   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,485   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,488   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,491   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,494   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,497   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,499   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,504   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,506   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,509   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,511   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,514   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,518   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,522   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,525   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,533   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,536   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,539   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,548   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,555   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,558   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,562   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,571   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,579   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,593   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,604   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,609   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,616   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,619   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,625   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,632   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,640   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,642   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,644   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,647   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,650   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,652   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,655   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,657   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,660   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,666   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,671   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,677   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,690   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,707   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,711   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,714   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,722   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,741   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,745   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,747   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,749   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-03-27T11:00:40,756   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,761   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,767   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,768   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,771   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,776   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,783   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-03-27T11:00:40,789   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T11:00:40,791   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T11:00:40,793   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T11:00:40,795   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T11:00:40,797   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-03-27T11:00:40,800   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,806   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-27T11:00:40,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-27T11:00:40,835   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-03-27T11:00:40,837   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,839   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,871   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T11:00:40,872   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T11:00:40,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T11:00:40,876   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T11:00:40,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-03-27T11:00:40,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,887   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,890   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,892   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,899   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,904   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,907   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,911   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,918   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,922   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,927   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,930   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-03-27T11:00:40,932   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,966   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,969   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,991   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,992   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:40,994   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,023   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-27T11:00:41,024   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-27T11:00:41,026   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-03-27T11:00:41,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,336   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-27T11:00:41,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-27T11:00:41,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-03-27T11:00:41,368   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,370   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,373   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,374   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,377   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,379   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,383   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,388   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,393   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-27T11:00:41,394   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-27T11:00:41,397   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-03-27T11:00:41,399   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,405   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,410   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-03-27T11:00:41,415   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-03-27T11:00:41,435   running install_egg_info
2024-03-27T11:00:41,441   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.29-py3.11.egg-info
2024-03-27T11:00:41,459   running install_scripts
2024-03-27T11:00:41,539   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.29.dist-info/WHEEL
2024-03-27T11:00:41,543   creating '/tmp/pip-wheel-o_1ullrx/.tmp-x_uhtpwf/moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-03-27T11:00:41,547   adding 'moleculekit/__init__.py'
2024-03-27T11:00:41,549   adding 'moleculekit/_version.py'
2024-03-27T11:00:41,557   adding 'moleculekit/align.py'
2024-03-27T11:00:41,878   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:42,038   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:42,044   adding 'moleculekit/bondguesser.py'
2024-03-27T11:00:42,289   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:42,297   adding 'moleculekit/config.py'
2024-03-27T11:00:42,557   adding 'moleculekit/cython_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:42,719   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:42,725   adding 'moleculekit/dihedral.py'
2024-03-27T11:00:42,727   adding 'moleculekit/distance.py'
2024-03-27T11:00:43,045   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:43,056   adding 'moleculekit/home.py'
2024-03-27T11:00:43,058   adding 'moleculekit/logging.ini'
2024-03-27T11:00:43,072   adding 'moleculekit/molecule.py'
2024-03-27T11:00:43,301   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:43,310   adding 'moleculekit/opm.py'
2024-03-27T11:00:43,312   adding 'moleculekit/periodictable.py'
2024-03-27T11:00:43,314   adding 'moleculekit/pymolgraphics.py'
2024-03-27T11:00:43,315   adding 'moleculekit/rcsb.py'
2024-03-27T11:00:43,317   adding 'moleculekit/rdkitintegration.py'
2024-03-27T11:00:43,331   adding 'moleculekit/readers.py'
2024-03-27T11:00:43,927   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:44,230   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:44,242   adding 'moleculekit/util.py'
2024-03-27T11:00:44,244   adding 'moleculekit/version.py'
2024-03-27T11:00:44,245   adding 'moleculekit/viewer.py'
2024-03-27T11:00:44,247   adding 'moleculekit/vmd_wrapper'
2024-03-27T11:00:44,249   adding 'moleculekit/vmdgraphics.py'
2024-03-27T11:00:44,252   adding 'moleculekit/vmdviewer.py'
2024-03-27T11:00:44,505   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:44,519   adding 'moleculekit/writers.py'
2024-03-27T11:00:44,779   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:44,788   adding 'moleculekit/atomselect/__init__.py'
2024-03-27T11:00:44,790   adding 'moleculekit/atomselect/analyze.py'
2024-03-27T11:00:44,792   adding 'moleculekit/atomselect/atomselect.py'
2024-03-27T11:00:44,795   adding 'moleculekit/atomselect/languageparser.py'
2024-03-27T11:00:44,898   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-03-27T11:00:44,909   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-03-27T11:00:45,000   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-03-27T11:00:45,010   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-03-27T11:00:45,098   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-03-27T11:00:45,107   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-03-27T11:00:45,209   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-03-27T11:00:45,219   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-03-27T11:00:45,221   adding 'moleculekit/fileformats/__init__.py'
2024-03-27T11:00:45,226   adding 'moleculekit/fileformats/netcdf.py'
2024-03-27T11:00:45,228   adding 'moleculekit/fileformats/utils.py'
2024-03-27T11:00:45,289   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-03-27T11:00:45,296   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-03-27T11:00:45,297   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-03-27T11:00:45,299   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-03-27T11:00:45,300   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-03-27T11:00:45,306   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-03-27T11:00:45,308   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-03-27T11:00:45,371   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-03-27T11:00:45,379   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-03-27T11:00:45,381   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-03-27T11:00:45,383   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-03-27T11:00:45,384   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-03-27T11:00:45,386   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-03-27T11:00:45,388   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-03-27T11:00:45,393   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-03-27T11:00:45,399   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-03-27T11:00:45,493   adding 'moleculekit/fileformats/xtc/trr.c'
2024-03-27T11:00:45,505   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-03-27T11:00:45,506   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-03-27T11:00:45,507   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-03-27T11:00:45,595   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-03-27T11:00:45,604   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-03-27T11:00:45,605   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-03-27T11:00:45,607   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-03-27T11:00:45,608   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-03-27T11:00:45,611   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-03-27T11:00:45,612   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-03-27T11:00:45,613   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-03-27T11:00:45,615   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-03-27T11:00:45,616   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-03-27T11:00:45,623   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-03-27T11:00:45,626   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-03-27T11:00:45,627   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-03-27T11:00:45,629   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-03-27T11:00:45,631   adding 'moleculekit/interactions/__init__.py'
2024-03-27T11:00:45,910   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:46,176   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:46,187   adding 'moleculekit/interactions/interactions.py'
2024-03-27T11:00:46,464   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:46,747   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2024-03-27T11:00:46,847   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-03-27T11:00:46,856   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-03-27T11:00:46,947   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-03-27T11:00:46,956   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-03-27T11:00:47,048   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-03-27T11:00:47,057   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-03-27T11:00:47,148   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-03-27T11:00:47,157   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-03-27T11:00:47,244   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-03-27T11:00:47,252   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-03-27T11:00:47,254   adding 'moleculekit/pdbx/__init__.py'
2024-03-27T11:00:47,257   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-03-27T11:00:47,260   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-03-27T11:00:47,262   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-03-27T11:00:47,264   adding 'moleculekit/pdbx/reader/__init__.py'
2024-03-27T11:00:47,266   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-03-27T11:00:47,268   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-03-27T11:00:47,269   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-03-27T11:00:47,270   adding 'moleculekit/pdbx/tests/__init__.py'
2024-03-27T11:00:47,272   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-03-27T11:00:47,274   adding 'moleculekit/pdbx/writer/__init__.py'
2024-03-27T11:00:47,275   adding 'moleculekit/ply/__init__.py'
2024-03-27T11:00:47,280   adding 'moleculekit/ply/lex.py'
2024-03-27T11:00:47,291   adding 'moleculekit/ply/yacc.py'
2024-03-27T11:00:47,293   adding 'moleculekit/projections/__init__.py'
2024-03-27T11:00:47,295   adding 'moleculekit/projections/metriccoordinate.py'
2024-03-27T11:00:47,299   adding 'moleculekit/projections/metricdihedral.py'
2024-03-27T11:00:47,303   adding 'moleculekit/projections/metricdistance.py'
2024-03-27T11:00:47,305   adding 'moleculekit/projections/metricfluctuation.py'
2024-03-27T11:00:47,307   adding 'moleculekit/projections/metricgyration.py'
2024-03-27T11:00:47,310   adding 'moleculekit/projections/metricplumed2.py'
2024-03-27T11:00:47,312   adding 'moleculekit/projections/metricrmsd.py'
2024-03-27T11:00:47,314   adding 'moleculekit/projections/metricsasa.py'
2024-03-27T11:00:47,316   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-03-27T11:00:47,317   adding 'moleculekit/projections/metricshell.py'
2024-03-27T11:00:47,319   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-03-27T11:00:47,320   adding 'moleculekit/projections/metrictmscore.py'
2024-03-27T11:00:47,322   adding 'moleculekit/projections/projection.py'
2024-03-27T11:00:47,323   adding 'moleculekit/projections/util.py'
2024-03-27T11:00:47,325   adding 'moleculekit/share/ALA.cif'
2024-03-27T11:00:47,326   adding 'moleculekit/share/backbone.cif'
2024-03-27T11:00:48,625   adding 'moleculekit/share/opm_sequences.json'
2024-03-27T11:00:48,710   adding 'moleculekit/share/atomselect/atomselect.json'
2024-03-27T11:00:48,715   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-03-27T11:00:48,716   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-03-27T11:00:48,717   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-03-27T11:00:48,719   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-03-27T11:00:48,720   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-03-27T11:00:48,721   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-03-27T11:00:48,723   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-03-27T11:00:48,724   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-03-27T11:00:48,726   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-03-27T11:00:48,727   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-03-27T11:00:48,728   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-03-27T11:00:48,729   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-03-27T11:00:48,731   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-03-27T11:00:48,732   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-03-27T11:00:48,733   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-03-27T11:00:48,735   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-03-27T11:00:48,736   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-03-27T11:00:48,737   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-03-27T11:00:48,739   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-03-27T11:00:48,740   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-03-27T11:00:48,741   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-03-27T11:00:48,743   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-03-27T11:00:48,744   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-03-27T11:00:48,745   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-03-27T11:00:48,747   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-03-27T11:00:48,748   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-03-27T11:00:48,749   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-03-27T11:00:48,751   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-03-27T11:00:48,752   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-03-27T11:00:48,754   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-03-27T11:00:48,755   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-03-27T11:00:48,756   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-03-27T11:00:48,757   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-03-27T11:00:48,759   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-03-27T11:00:48,760   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-03-27T11:00:48,761   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-03-27T11:00:48,762   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-03-27T11:00:48,764   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-03-27T11:00:48,765   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-03-27T11:00:48,767   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-03-27T11:00:48,768   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-03-27T11:00:48,770   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-03-27T11:00:48,771   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-03-27T11:00:48,772   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-03-27T11:00:48,774   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-03-27T11:00:48,775   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-03-27T11:00:48,776   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-03-27T11:00:48,778   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-03-27T11:00:48,779   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-03-27T11:00:48,780   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-03-27T11:00:48,781   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-03-27T11:00:48,783   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-03-27T11:00:48,784   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-03-27T11:00:48,785   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-03-27T11:00:48,786   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-03-27T11:00:48,788   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-03-27T11:00:48,789   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-03-27T11:00:48,790   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-03-27T11:00:48,792   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-03-27T11:00:48,793   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-03-27T11:00:48,795   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-03-27T11:00:48,796   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-03-27T11:00:48,797   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-03-27T11:00:48,798   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-03-27T11:00:48,800   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-03-27T11:00:48,801   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-03-27T11:00:48,802   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-03-27T11:00:48,803   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-03-27T11:00:48,805   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-03-27T11:00:48,806   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-03-27T11:00:48,807   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-03-27T11:00:48,808   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-03-27T11:00:48,809   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-03-27T11:00:48,811   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-03-27T11:00:48,812   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-03-27T11:00:48,813   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-03-27T11:00:48,815   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-03-27T11:00:48,816   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-03-27T11:00:48,817   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-03-27T11:00:48,819   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-03-27T11:00:48,820   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-03-27T11:00:48,821   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-03-27T11:00:48,822   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-03-27T11:00:48,824   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-03-27T11:00:48,825   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-03-27T11:00:48,826   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-03-27T11:00:48,828   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-03-27T11:00:48,829   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-03-27T11:00:48,831   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-03-27T11:00:48,832   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-03-27T11:00:48,834   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-03-27T11:00:48,836   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-03-27T11:00:48,837   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-03-27T11:00:48,838   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-03-27T11:00:48,840   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-03-27T11:00:48,841   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-03-27T11:00:48,842   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-03-27T11:00:48,844   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-03-27T11:00:48,845   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-03-27T11:00:48,847   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-03-27T11:00:48,848   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-03-27T11:00:48,850   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-03-27T11:00:48,851   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-03-27T11:00:48,852   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-03-27T11:00:48,854   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-03-27T11:00:48,855   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-03-27T11:00:48,856   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-03-27T11:00:48,857   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-03-27T11:00:48,859   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-03-27T11:00:48,860   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-03-27T11:00:48,862   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-03-27T11:00:48,863   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-03-27T11:00:48,864   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-03-27T11:00:48,866   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-03-27T11:00:48,867   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-03-27T11:00:48,868   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-03-27T11:00:48,869   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-03-27T11:00:48,871   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-03-27T11:00:48,872   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-03-27T11:00:48,873   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-03-27T11:00:48,874   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-03-27T11:00:48,875   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-03-27T11:00:48,877   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-03-27T11:00:48,878   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-03-27T11:00:48,879   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-03-27T11:00:48,881   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-03-27T11:00:48,882   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-03-27T11:00:48,883   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-03-27T11:00:48,885   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-03-27T11:00:48,886   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-03-27T11:00:48,888   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-03-27T11:00:48,889   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-03-27T11:00:48,891   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-03-27T11:00:48,892   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-03-27T11:00:48,894   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-03-27T11:00:48,895   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-03-27T11:00:48,897   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-03-27T11:00:48,898   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-03-27T11:00:48,899   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-03-27T11:00:48,901   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-03-27T11:00:48,902   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-03-27T11:00:48,903   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-03-27T11:00:48,905   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-03-27T11:00:48,906   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-03-27T11:00:48,908   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-03-27T11:00:48,909   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-03-27T11:00:48,910   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-03-27T11:00:48,911   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-03-27T11:00:48,912   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-03-27T11:00:48,913   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-03-27T11:00:48,915   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-03-27T11:00:48,916   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-03-27T11:00:48,917   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-03-27T11:00:48,918   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-03-27T11:00:48,920   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-03-27T11:00:48,921   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-03-27T11:00:48,922   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-03-27T11:00:48,923   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-03-27T11:00:48,925   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-03-27T11:00:48,926   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-03-27T11:00:48,927   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-03-27T11:00:48,929   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-03-27T11:00:48,930   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-03-27T11:00:48,931   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-03-27T11:00:48,932   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-03-27T11:00:48,934   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-03-27T11:00:48,935   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-03-27T11:00:48,936   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-03-27T11:00:48,938   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-03-27T11:00:48,939   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-03-27T11:00:48,940   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-03-27T11:00:48,941   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-03-27T11:00:48,943   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-03-27T11:00:48,944   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-03-27T11:00:48,945   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-03-27T11:00:48,947   adding 'moleculekit/smallmol/__init__.py'
2024-03-27T11:00:48,952   adding 'moleculekit/smallmol/smallmol.py'
2024-03-27T11:00:48,955   adding 'moleculekit/smallmol/smallmollib.py'
2024-03-27T11:00:48,957   adding 'moleculekit/smallmol/test_smallmol.py'
2024-03-27T11:00:48,959   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-03-27T11:00:48,961   adding 'moleculekit/smallmol/util.py'
2024-03-27T11:00:48,963   adding 'moleculekit/smallmol/tools/__init__.py'
2024-03-27T11:00:48,964   adding 'moleculekit/smallmol/tools/clustering.py'
2024-03-27T11:00:48,966   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-03-27T11:00:48,968   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-03-27T11:00:49,057   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-03-27T11:00:49,065   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-03-27T11:00:49,067   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-03-27T11:00:49,068   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-03-27T11:00:49,086   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-03-27T11:00:49,089   adding 'moleculekit/tools/__init__.py'
2024-03-27T11:00:49,091   adding 'moleculekit/tools/atomtyper.py'
2024-03-27T11:00:49,093   adding 'moleculekit/tools/autosegment.py'
2024-03-27T11:00:49,095   adding 'moleculekit/tools/crystalpacking.py'
2024-03-27T11:00:49,099   adding 'moleculekit/tools/detect.py'
2024-03-27T11:00:49,101   adding 'moleculekit/tools/docking.py'
2024-03-27T11:00:49,103   adding 'moleculekit/tools/graphalignment.py'
2024-03-27T11:00:49,105   adding 'moleculekit/tools/hhblitsprofile.py'
2024-03-27T11:00:49,106   adding 'moleculekit/tools/modelling.py'
2024-03-27T11:00:49,108   adding 'moleculekit/tools/moleculechecks.py'
2024-03-27T11:00:49,114   adding 'moleculekit/tools/preparation.py'
2024-03-27T11:00:49,117   adding 'moleculekit/tools/preparation_customres.py'
2024-03-27T11:00:49,119   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-03-27T11:00:49,122   adding 'moleculekit/tools/voxeldescriptors.py'
2024-03-27T11:00:49,124   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-03-27T11:00:49,125   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-03-27T11:00:49,216   adding 'moleculekit/wrapping/wrapping.cpp'
2024-03-27T11:00:49,225   adding 'moleculekit/wrapping/wrapping.pyx'
2024-03-27T11:00:49,227   adding 'moleculekit-1.8.29.dist-info/LICENSE'
2024-03-27T11:00:49,229   adding 'moleculekit-1.8.29.dist-info/METADATA'
2024-03-27T11:00:49,230   adding 'moleculekit-1.8.29.dist-info/WHEEL'
2024-03-27T11:00:49,231   adding 'moleculekit-1.8.29.dist-info/top_level.txt'
2024-03-27T11:00:49,236   adding 'moleculekit-1.8.29.dist-info/RECORD'
2024-03-27T11:00:49,684   removing build/bdist.linux-armv7l/wheel
2024-03-27T11:00:49,996   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-03-27T11:00:50,349   Created wheel for moleculekit: filename=moleculekit-1.8.29-cp311-cp311-linux_armv7l.whl size=15271449 sha256=ba84e1392124eb438846b78998fb0f26e8d9942c644dd5574f49d9eb9b0f6a87
2024-03-27T11:00:50,350   Stored in directory: /tmp/pip-ephem-wheel-cache-8yd68hq6/wheels/1d/c7/97/6a8db142110681357fc87d79d57e1bb8789d742fca2957c4c8
2024-03-27T11:00:50,377 Successfully built moleculekit
2024-03-27T11:00:51,266 Removed build tracker: '/tmp/pip-build-tracker-1y8aovoi'