2024-03-28T23:13:16,576 Created temporary directory: /tmp/pip-build-tracker-d_8wzc2w 2024-03-28T23:13:16,578 Initialized build tracking at /tmp/pip-build-tracker-d_8wzc2w 2024-03-28T23:13:16,578 Created build tracker: /tmp/pip-build-tracker-d_8wzc2w 2024-03-28T23:13:16,579 Entered build tracker: /tmp/pip-build-tracker-d_8wzc2w 2024-03-28T23:13:16,580 Created temporary directory: /tmp/pip-wheel-gk1g7vh1 2024-03-28T23:13:16,583 Created temporary directory: /tmp/pip-ephem-wheel-cache-onptqwt6 2024-03-28T23:13:16,610 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-28T23:13:16,614 2 location(s) to search for versions of scarcc: 2024-03-28T23:13:16,614 * https://pypi.org/simple/scarcc/ 2024-03-28T23:13:16,614 * https://www.piwheels.org/simple/scarcc/ 2024-03-28T23:13:16,615 Fetching project page and analyzing links: https://pypi.org/simple/scarcc/ 2024-03-28T23:13:16,616 Getting page https://pypi.org/simple/scarcc/ 2024-03-28T23:13:16,618 Found index url https://pypi.org/simple/ 2024-03-28T23:13:16,844 Fetched page https://pypi.org/simple/scarcc/ as application/vnd.pypi.simple.v1+json 2024-03-28T23:13:16,848 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/32/66/7f973d1f25516334d34d62aea227070b5fc80b184d6dca40a27ef12e64e3/scarcc-0.0.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-28T23:13:16,848 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/2a/89/3e900dfde939e2f3ffa4da4b615295e289c2377d0e0a536b738dbac61847/scarcc-0.0.10-py3-none-any.whl (from https://pypi.org/simple/scarcc/) 2024-03-28T23:13:16,849 Found link https://files.pythonhosted.org/packages/30/6b/b65fc75197f99e8ce7bacaa233c19d80cf3cce5add4c4b12fff5967dc0d2/scarcc-0.0.10.tar.gz (from https://pypi.org/simple/scarcc/), version: 0.0.10 2024-03-28T23:13:16,850 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/c0/32/4840ce6210355020327ee5eda21165a56282d46369e6b1d6d5d8fe537e21/scarcc-0.0.21-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,851 Found link https://files.pythonhosted.org/packages/e0/1d/ddc312f4a66b9a25d346bcab3407258d8fcb07352709ba18827310ad313c/scarcc-0.0.21.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.21 2024-03-28T23:13:16,852 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/9a/e9/6cab4cf589c899c5362e4d18fc1478fce38a123f0af558f8eea5d6b13182/scarcc-0.0.23-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,853 Found link https://files.pythonhosted.org/packages/01/78/0316b97f9db104b44c8c35cc65d526b3a3b22cff44623afeaa7527f1a629/scarcc-0.0.23.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.0.23 2024-03-28T23:13:16,854 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/3e/71/bca2eab03bc095f1e748d8ad53064453be750c689627ec90e4ae85f60c28/scarcc-0.1.0-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,855 Found link https://files.pythonhosted.org/packages/68/af/324fb934fc7c3238bb792127ab053302fb598faee694823de0b98d319cb3/scarcc-0.1.0.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.0 2024-03-28T23:13:16,856 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/75/6b/711a0973554042f8eab900c92381eba54d1b5d869140a32887d25d8986e9/scarcc-0.1.1-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,858 Found link https://files.pythonhosted.org/packages/3a/55/e779f80b5835414a3f105214bbd492e88793626073b4977910b6b8d49fe2/scarcc-0.1.1.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.1 2024-03-28T23:13:16,859 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/28/69/e00f174ae9649ccda95c44ef7d68190bfb4d806757682cd0ed448b86fc58/scarcc-0.1.2-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,860 Found link https://files.pythonhosted.org/packages/76/84/2a4b3ac554eda645b5111173da060934263c1d51dfa1bbd6bc3efbda9369/scarcc-0.1.2.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.2 2024-03-28T23:13:16,862 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/20/e1/4040d4340571bfda4c1684de44829cd2b4d9acf65640fd8e94dea7485bd1/scarcc-0.1.3-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,863 Found link https://files.pythonhosted.org/packages/9a/78/141870d1bcd1cd046317dc41694998829d67edc7f2c9f6766c806d84a75e/scarcc-0.1.3.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.3 2024-03-28T23:13:16,864 Skipping link: No binaries permitted for scarcc: https://files.pythonhosted.org/packages/29/43/0630b13a05b3c1acacca561eb6936abc078a8b74801dc6fc3d3deddfdbe9/scarcc-0.1.4-py3-none-any.whl (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:16,865 Found link https://files.pythonhosted.org/packages/03/c7/17a46f539e98f3fb821d40264f161f8a6fe8141cbe7e281ece19adcbf843/scarcc-0.1.4.tar.gz (from https://pypi.org/simple/scarcc/) (requires-python:>=3.10), version: 0.1.4 2024-03-28T23:13:16,866 Fetching project page and analyzing links: https://www.piwheels.org/simple/scarcc/ 2024-03-28T23:13:16,867 Getting page https://www.piwheels.org/simple/scarcc/ 2024-03-28T23:13:16,869 Found index url https://www.piwheels.org/simple/ 2024-03-28T23:13:17,297 Fetched page https://www.piwheels.org/simple/scarcc/ as text/html 2024-03-28T23:13:17,300 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.3-py3-none-any.whl#sha256=b903747d0529e1a6a14bf17b79a839c1e515a4e550ac462f1041e98516686c1d (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:17,300 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.2-py3-none-any.whl#sha256=a465928c10fba6025f08f5eeb9d6d01113e5ce57f6ee6f2b96ab57315293fef3 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:17,301 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.1-py3-none-any.whl#sha256=49bc30639987874b31a8133c4976179ca76d46070620c5e00fb2c342f83a5164 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:17,302 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.1.0-py3-none-any.whl#sha256=de9f345b75c2ff3a756e8e5ec80ad3d7389d2da95004706231b4a8f3c94b7228 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:17,302 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.23-py3-none-any.whl#sha256=ec7ecb8295fee00c9793b736528d5721a671763fc5e6c9eb346cff07a8d90e48 (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:17,303 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.21-py3-none-any.whl#sha256=60324a3750ab0872a4899af7e1d1d7473e5afbf73bc24e32d4813a7173237c5f (from https://www.piwheels.org/simple/scarcc/) (requires-python:>=3.10) 2024-03-28T23:13:17,304 Skipping link: No binaries permitted for scarcc: https://www.piwheels.org/simple/scarcc/scarcc-0.0.10-py3-none-any.whl#sha256=0b4afea4ec53795f21e57430c1f7f849ded79621b716982836453a570fda8d29 (from https://www.piwheels.org/simple/scarcc/) 2024-03-28T23:13:17,304 Skipping link: not a file: https://www.piwheels.org/simple/scarcc/ 2024-03-28T23:13:17,305 Skipping link: not a file: https://pypi.org/simple/scarcc/ 2024-03-28T23:13:17,324 Given no hashes to check 1 links for project 'scarcc': discarding no candidates 2024-03-28T23:13:17,342 Collecting scarcc==0.1.4 2024-03-28T23:13:17,344 Created temporary directory: /tmp/pip-unpack-fioe0les 2024-03-28T23:13:17,554 Downloading scarcc-0.1.4.tar.gz (52 kB) 2024-03-28T23:13:17,738 Added scarcc==0.1.4 from https://files.pythonhosted.org/packages/03/c7/17a46f539e98f3fb821d40264f161f8a6fe8141cbe7e281ece19adcbf843/scarcc-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-d_8wzc2w' 2024-03-28T23:13:17,743 Created temporary directory: /tmp/pip-build-env-1tbxsj4e 2024-03-28T23:13:17,748 Installing build dependencies: started 2024-03-28T23:13:17,749 Running command pip subprocess to install build dependencies 2024-03-28T23:13:18,907 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-28T23:13:19,433 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-28T23:13:21,782 Collecting setuptools>=40.6.0 2024-03-28T23:13:22,019 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-28T23:13:22,258 Collecting wheel 2024-03-28T23:13:22,288 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-28T23:13:25,403 Installing collected packages: wheel, setuptools 2024-03-28T23:13:25,648 Creating /tmp/pip-build-env-1tbxsj4e/overlay/local/bin 2024-03-28T23:13:25,651 changing mode of /tmp/pip-build-env-1tbxsj4e/overlay/local/bin/wheel to 755 2024-03-28T23:13:28,620 Successfully installed setuptools-69.2.0 wheel-0.43.0 2024-03-28T23:13:29,205 Installing build dependencies: finished with status 'done' 2024-03-28T23:13:29,208 Getting requirements to build wheel: started 2024-03-28T23:13:29,209 Running command Getting requirements to build wheel 2024-03-28T23:13:29,753 running egg_info 2024-03-28T23:13:29,757 writing src/scarcc.egg-info/PKG-INFO 2024-03-28T23:13:29,761 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-28T23:13:29,764 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-28T23:13:29,765 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-28T23:13:29,801 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:29,805 adding license file 'LICENSE' 2024-03-28T23:13:29,808 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:29,885 Getting requirements to build wheel: finished with status 'done' 2024-03-28T23:13:29,895 Created temporary directory: /tmp/pip-modern-metadata-q3m7kpzm 2024-03-28T23:13:29,898 Preparing metadata (pyproject.toml): started 2024-03-28T23:13:29,899 Running command Preparing metadata (pyproject.toml) 2024-03-28T23:13:31,026 running dist_info 2024-03-28T23:13:31,031 creating /tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info 2024-03-28T23:13:31,035 writing /tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/PKG-INFO 2024-03-28T23:13:31,042 writing dependency_links to /tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/dependency_links.txt 2024-03-28T23:13:31,045 writing requirements to /tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/requires.txt 2024-03-28T23:13:31,047 writing top-level names to /tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/top_level.txt 2024-03-28T23:13:31,049 writing manifest file '/tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:31,082 reading manifest file '/tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:31,084 adding license file 'LICENSE' 2024-03-28T23:13:31,087 writing manifest file '/tmp/pip-modern-metadata-q3m7kpzm/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:31,088 creating '/tmp/pip-modern-metadata-q3m7kpzm/scarcc-0.1.4.dist-info' 2024-03-28T23:13:31,516 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-28T23:13:31,520 Source in /tmp/pip-wheel-gk1g7vh1/scarcc_aee3cd7ace894631afbcf58d8bb1d089 has version 0.1.4, which satisfies requirement scarcc==0.1.4 from https://files.pythonhosted.org/packages/03/c7/17a46f539e98f3fb821d40264f161f8a6fe8141cbe7e281ece19adcbf843/scarcc-0.1.4.tar.gz 2024-03-28T23:13:31,521 Removed scarcc==0.1.4 from https://files.pythonhosted.org/packages/03/c7/17a46f539e98f3fb821d40264f161f8a6fe8141cbe7e281ece19adcbf843/scarcc-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-d_8wzc2w' 2024-03-28T23:13:31,526 Created temporary directory: /tmp/pip-unpack-zsnskin2 2024-03-28T23:13:31,527 Created temporary directory: /tmp/pip-unpack-cd885lfu 2024-03-28T23:13:31,541 Building wheels for collected packages: scarcc 2024-03-28T23:13:31,545 Created temporary directory: /tmp/pip-wheel-3q3v9o5o 2024-03-28T23:13:31,545 Destination directory: /tmp/pip-wheel-3q3v9o5o 2024-03-28T23:13:31,548 Building wheel for scarcc (pyproject.toml): started 2024-03-28T23:13:31,549 Running command Building wheel for scarcc (pyproject.toml) 2024-03-28T23:13:32,924 running bdist_wheel 2024-03-28T23:13:33,133 running build 2024-03-28T23:13:33,134 running build_py 2024-03-28T23:13:33,141 creating build 2024-03-28T23:13:33,141 creating build/lib 2024-03-28T23:13:33,142 creating build/lib/scarcc 2024-03-28T23:13:33,143 copying src/scarcc/__init__.py -> build/lib/scarcc 2024-03-28T23:13:33,146 creating build/lib/scarcc/utils 2024-03-28T23:13:33,146 copying src/scarcc/utils/__init__.py -> build/lib/scarcc/utils 2024-03-28T23:13:33,148 copying src/scarcc/utils/util.py -> build/lib/scarcc/utils 2024-03-28T23:13:33,151 creating build/lib/scarcc/sim_engine 2024-03-28T23:13:33,152 copying src/scarcc/sim_engine/output.py -> build/lib/scarcc/sim_engine 2024-03-28T23:13:33,155 copying src/scarcc/sim_engine/flux_extraction.py -> build/lib/scarcc/sim_engine 2024-03-28T23:13:33,157 copying src/scarcc/sim_engine/checkerboard_workflow.py -> build/lib/scarcc/sim_engine 2024-03-28T23:13:33,159 copying src/scarcc/sim_engine/__init__.py -> build/lib/scarcc/sim_engine 2024-03-28T23:13:33,162 copying src/scarcc/sim_engine/simulation_configuration.py -> build/lib/scarcc/sim_engine 2024-03-28T23:13:33,167 copying src/scarcc/sim_engine/simulation_workflow.py -> build/lib/scarcc/sim_engine 2024-03-28T23:13:33,173 creating build/lib/scarcc/data_analysis 2024-03-28T23:13:33,390 copying src/scarcc/data_analysis/__init__.py -> build/lib/scarcc/data_analysis 2024-03-28T23:13:33,393 creating build/lib/scarcc/preparation 2024-03-28T23:13:33,395 copying src/scarcc/preparation/find_directory.py -> build/lib/scarcc/preparation 2024-03-28T23:13:33,515 copying src/scarcc/preparation/__init__.py -> build/lib/scarcc/preparation 2024-03-28T23:13:33,518 creating build/lib/scarcc/data_analysis/growth 2024-03-28T23:13:33,519 copying src/scarcc/data_analysis/growth/growth_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-28T23:13:33,525 copying src/scarcc/data_analysis/growth/plot_growth_curve.py -> build/lib/scarcc/data_analysis/growth 2024-03-28T23:13:33,529 copying src/scarcc/data_analysis/growth/_pathway_summary.py -> build/lib/scarcc/data_analysis/growth 2024-03-28T23:13:33,534 copying src/scarcc/data_analysis/growth/__init__.py -> build/lib/scarcc/data_analysis/growth 2024-03-28T23:13:33,536 copying src/scarcc/data_analysis/growth/growth_rate.py -> build/lib/scarcc/data_analysis/growth 2024-03-28T23:13:33,539 creating build/lib/scarcc/data_analysis/drug_combination_response 2024-03-28T23:13:33,541 copying src/scarcc/data_analysis/drug_combination_response/__init__.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-28T23:13:33,544 copying src/scarcc/data_analysis/drug_combination_response/classification.py -> build/lib/scarcc/data_analysis/drug_combination_response 2024-03-28T23:13:33,548 creating build/lib/scarcc/data_analysis/flux 2024-03-28T23:13:33,549 copying src/scarcc/data_analysis/flux/carbon_allocation.py -> build/lib/scarcc/data_analysis/flux 2024-03-28T23:13:33,554 copying src/scarcc/data_analysis/flux/flux_snapshot.py -> build/lib/scarcc/data_analysis/flux 2024-03-28T23:13:33,557 copying src/scarcc/data_analysis/flux/__init__.py -> build/lib/scarcc/data_analysis/flux 2024-03-28T23:13:33,561 copying src/scarcc/data_analysis/flux/flux_correction.py -> build/lib/scarcc/data_analysis/flux 2024-03-28T23:13:33,565 copying src/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/lib/scarcc/data_analysis/flux 2024-03-28T23:13:33,571 creating build/lib/scarcc/data_analysis/plot 2024-03-28T23:13:33,573 copying src/scarcc/data_analysis/plot/legend.py -> build/lib/scarcc/data_analysis/plot 2024-03-28T23:13:33,621 copying src/scarcc/data_analysis/plot/scatter.py -> build/lib/scarcc/data_analysis/plot 2024-03-28T23:13:33,625 copying src/scarcc/data_analysis/plot/heatmap.py -> build/lib/scarcc/data_analysis/plot 2024-03-28T23:13:33,627 copying src/scarcc/data_analysis/plot/__init__.py -> build/lib/scarcc/data_analysis/plot 2024-03-28T23:13:33,629 copying src/scarcc/data_analysis/plot/kde.py -> build/lib/scarcc/data_analysis/plot 2024-03-28T23:13:33,632 creating build/lib/scarcc/preparation/metabolic_model 2024-03-28T23:13:33,633 copying src/scarcc/preparation/metabolic_model/__init__.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-28T23:13:33,634 copying src/scarcc/preparation/metabolic_model/basic_model.py -> build/lib/scarcc/preparation/metabolic_model 2024-03-28T23:13:33,637 creating build/lib/scarcc/preparation/perturbation 2024-03-28T23:13:33,639 copying src/scarcc/preparation/perturbation/__init__.py -> build/lib/scarcc/preparation/perturbation 2024-03-28T23:13:33,890 creating build/lib/scarcc/preparation/target_gene 2024-03-28T23:13:33,890 copying src/scarcc/preparation/target_gene/gene_format_handler.py -> build/lib/scarcc/preparation/target_gene 2024-03-28T23:13:33,893 copying src/scarcc/preparation/target_gene/__init__.py -> build/lib/scarcc/preparation/target_gene 2024-03-28T23:13:33,895 creating build/lib/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:33,896 copying src/scarcc/preparation/metabolic_model/core/component.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:33,899 copying src/scarcc/preparation/metabolic_model/core/__init__.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:33,901 copying src/scarcc/preparation/metabolic_model/core/medium.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:33,903 copying src/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/lib/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:33,905 creating build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:33,906 copying src/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:33,909 copying src/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:33,911 copying src/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:33,914 copying src/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:33,919 copying src/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/lib/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:33,923 creating build/lib/scarcc/preparation/perturbation/function 2024-03-28T23:13:33,924 copying src/scarcc/preparation/perturbation/function/iter_species.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-28T23:13:33,926 copying src/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-28T23:13:33,929 copying src/scarcc/preparation/perturbation/function/__init__.py -> build/lib/scarcc/preparation/perturbation/function 2024-03-28T23:13:34,432 installing to build/bdist.linux-armv7l/wheel 2024-03-28T23:13:34,433 running install 2024-03-28T23:13:34,455 running install_lib 2024-03-28T23:13:34,681 creating build/bdist.linux-armv7l 2024-03-28T23:13:34,682 creating build/bdist.linux-armv7l/wheel 2024-03-28T23:13:34,685 creating build/bdist.linux-armv7l/wheel/scarcc 2024-03-28T23:13:34,687 creating build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-28T23:13:34,689 copying build/lib/scarcc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-28T23:13:34,693 copying build/lib/scarcc/utils/util.py -> build/bdist.linux-armv7l/wheel/scarcc/utils 2024-03-28T23:13:34,695 copying build/lib/scarcc/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc 2024-03-28T23:13:34,698 creating build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,700 copying build/lib/scarcc/sim_engine/output.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,704 copying build/lib/scarcc/sim_engine/flux_extraction.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,708 copying build/lib/scarcc/sim_engine/checkerboard_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,713 copying build/lib/scarcc/sim_engine/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,716 copying build/lib/scarcc/sim_engine/simulation_configuration.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,721 copying build/lib/scarcc/sim_engine/simulation_workflow.py -> build/bdist.linux-armv7l/wheel/scarcc/sim_engine 2024-03-28T23:13:34,730 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-28T23:13:34,735 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-28T23:13:34,771 copying build/lib/scarcc/data_analysis/growth/growth_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-28T23:13:34,777 copying build/lib/scarcc/data_analysis/growth/plot_growth_curve.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-28T23:13:34,783 copying build/lib/scarcc/data_analysis/growth/_pathway_summary.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-28T23:13:34,790 copying build/lib/scarcc/data_analysis/growth/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-28T23:13:35,010 copying build/lib/scarcc/data_analysis/growth/growth_rate.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/growth 2024-03-28T23:13:35,013 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-28T23:13:35,014 copying build/lib/scarcc/data_analysis/drug_combination_response/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-28T23:13:35,016 copying build/lib/scarcc/data_analysis/drug_combination_response/classification.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/drug_combination_response 2024-03-28T23:13:35,019 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-28T23:13:35,020 copying build/lib/scarcc/data_analysis/flux/carbon_allocation.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-28T23:13:35,023 copying build/lib/scarcc/data_analysis/flux/flux_snapshot.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-28T23:13:35,026 copying build/lib/scarcc/data_analysis/flux/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-28T23:13:35,028 copying build/lib/scarcc/data_analysis/flux/flux_correction.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-28T23:13:35,030 copying build/lib/scarcc/data_analysis/flux/flux_ratio_analysis.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/flux 2024-03-28T23:13:35,033 copying build/lib/scarcc/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis 2024-03-28T23:13:35,036 creating build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-28T23:13:35,037 copying build/lib/scarcc/data_analysis/plot/legend.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-28T23:13:35,040 copying build/lib/scarcc/data_analysis/plot/scatter.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-28T23:13:35,043 copying build/lib/scarcc/data_analysis/plot/heatmap.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-28T23:13:35,045 copying build/lib/scarcc/data_analysis/plot/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-28T23:13:35,047 copying build/lib/scarcc/data_analysis/plot/kde.py -> build/bdist.linux-armv7l/wheel/scarcc/data_analysis/plot 2024-03-28T23:13:35,050 creating build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-28T23:13:35,051 copying build/lib/scarcc/preparation/find_directory.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-28T23:13:35,053 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-28T23:13:35,054 copying build/lib/scarcc/preparation/metabolic_model/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-28T23:13:35,057 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:35,058 copying build/lib/scarcc/preparation/metabolic_model/core/component.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:35,061 copying build/lib/scarcc/preparation/metabolic_model/core/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:35,063 copying build/lib/scarcc/preparation/metabolic_model/core/medium.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:35,065 copying build/lib/scarcc/preparation/metabolic_model/core/flux_weighting.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model/core 2024-03-28T23:13:35,067 copying build/lib/scarcc/preparation/metabolic_model/basic_model.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/metabolic_model 2024-03-28T23:13:35,070 copying build/lib/scarcc/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation 2024-03-28T23:13:35,072 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-28T23:13:35,074 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:35,075 copying build/lib/scarcc/preparation/perturbation/alpha_finder/coculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:35,078 copying build/lib/scarcc/preparation/perturbation/alpha_finder/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:35,080 copying build/lib/scarcc/preparation/perturbation/alpha_finder/checkerboard.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:35,083 copying build/lib/scarcc/preparation/perturbation/alpha_finder/monoculture.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:35,086 copying build/lib/scarcc/preparation/perturbation/alpha_finder/alpha_finder.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/alpha_finder 2024-03-28T23:13:35,089 copying build/lib/scarcc/preparation/perturbation/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation 2024-03-28T23:13:35,092 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-28T23:13:35,093 copying build/lib/scarcc/preparation/perturbation/function/iter_species.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-28T23:13:35,095 copying build/lib/scarcc/preparation/perturbation/function/stoichiometry_scaling.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-28T23:13:35,098 copying build/lib/scarcc/preparation/perturbation/function/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/perturbation/function 2024-03-28T23:13:35,101 creating build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-28T23:13:35,102 copying build/lib/scarcc/preparation/target_gene/gene_format_handler.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-28T23:13:35,105 copying build/lib/scarcc/preparation/target_gene/__init__.py -> build/bdist.linux-armv7l/wheel/scarcc/preparation/target_gene 2024-03-28T23:13:35,106 running install_egg_info 2024-03-28T23:13:35,118 running egg_info 2024-03-28T23:13:35,122 writing src/scarcc.egg-info/PKG-INFO 2024-03-28T23:13:35,125 writing dependency_links to src/scarcc.egg-info/dependency_links.txt 2024-03-28T23:13:35,127 writing requirements to src/scarcc.egg-info/requires.txt 2024-03-28T23:13:35,128 writing top-level names to src/scarcc.egg-info/top_level.txt 2024-03-28T23:13:35,149 reading manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:35,152 adding license file 'LICENSE' 2024-03-28T23:13:35,155 writing manifest file 'src/scarcc.egg-info/SOURCES.txt' 2024-03-28T23:13:35,157 Copying src/scarcc.egg-info to build/bdist.linux-armv7l/wheel/scarcc-0.1.4-py3.11.egg-info 2024-03-28T23:13:35,167 running install_scripts 2024-03-28T23:13:35,183 creating build/bdist.linux-armv7l/wheel/scarcc-0.1.4.dist-info/WHEEL 2024-03-28T23:13:35,186 creating '/tmp/pip-wheel-3q3v9o5o/.tmp-4_bqz3d3/scarcc-0.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-28T23:13:35,189 adding 'scarcc/__init__.py' 2024-03-28T23:13:35,191 adding 'scarcc/data_analysis/__init__.py' 2024-03-28T23:13:35,193 adding 'scarcc/data_analysis/drug_combination_response/__init__.py' 2024-03-28T23:13:35,194 adding 'scarcc/data_analysis/drug_combination_response/classification.py' 2024-03-28T23:13:35,197 adding 'scarcc/data_analysis/flux/__init__.py' 2024-03-28T23:13:35,198 adding 'scarcc/data_analysis/flux/carbon_allocation.py' 2024-03-28T23:13:35,200 adding 'scarcc/data_analysis/flux/flux_correction.py' 2024-03-28T23:13:35,202 adding 'scarcc/data_analysis/flux/flux_ratio_analysis.py' 2024-03-28T23:13:35,203 adding 'scarcc/data_analysis/flux/flux_snapshot.py' 2024-03-28T23:13:35,205 adding 'scarcc/data_analysis/growth/__init__.py' 2024-03-28T23:13:35,207 adding 'scarcc/data_analysis/growth/_pathway_summary.py' 2024-03-28T23:13:35,209 adding 'scarcc/data_analysis/growth/growth_rate.py' 2024-03-28T23:13:35,211 adding 'scarcc/data_analysis/growth/growth_summary.py' 2024-03-28T23:13:35,213 adding 'scarcc/data_analysis/growth/plot_growth_curve.py' 2024-03-28T23:13:35,215 adding 'scarcc/data_analysis/plot/__init__.py' 2024-03-28T23:13:35,216 adding 'scarcc/data_analysis/plot/heatmap.py' 2024-03-28T23:13:35,218 adding 'scarcc/data_analysis/plot/kde.py' 2024-03-28T23:13:35,220 adding 'scarcc/data_analysis/plot/legend.py' 2024-03-28T23:13:35,221 adding 'scarcc/data_analysis/plot/scatter.py' 2024-03-28T23:13:35,223 adding 'scarcc/preparation/__init__.py' 2024-03-28T23:13:35,225 adding 'scarcc/preparation/find_directory.py' 2024-03-28T23:13:35,227 adding 'scarcc/preparation/metabolic_model/__init__.py' 2024-03-28T23:13:35,229 adding 'scarcc/preparation/metabolic_model/basic_model.py' 2024-03-28T23:13:35,231 adding 'scarcc/preparation/metabolic_model/core/__init__.py' 2024-03-28T23:13:35,233 adding 'scarcc/preparation/metabolic_model/core/component.py' 2024-03-28T23:13:35,235 adding 'scarcc/preparation/metabolic_model/core/flux_weighting.py' 2024-03-28T23:13:35,237 adding 'scarcc/preparation/metabolic_model/core/medium.py' 2024-03-28T23:13:35,239 adding 'scarcc/preparation/perturbation/__init__.py' 2024-03-28T23:13:35,241 adding 'scarcc/preparation/perturbation/alpha_finder/__init__.py' 2024-03-28T23:13:35,243 adding 'scarcc/preparation/perturbation/alpha_finder/alpha_finder.py' 2024-03-28T23:13:35,246 adding 'scarcc/preparation/perturbation/alpha_finder/checkerboard.py' 2024-03-28T23:13:35,248 adding 'scarcc/preparation/perturbation/alpha_finder/coculture.py' 2024-03-28T23:13:35,251 adding 'scarcc/preparation/perturbation/alpha_finder/monoculture.py' 2024-03-28T23:13:35,253 adding 'scarcc/preparation/perturbation/function/__init__.py' 2024-03-28T23:13:35,254 adding 'scarcc/preparation/perturbation/function/iter_species.py' 2024-03-28T23:13:35,256 adding 'scarcc/preparation/perturbation/function/stoichiometry_scaling.py' 2024-03-28T23:13:35,258 adding 'scarcc/preparation/target_gene/__init__.py' 2024-03-28T23:13:35,260 adding 'scarcc/preparation/target_gene/gene_format_handler.py' 2024-03-28T23:13:35,261 adding 'scarcc/sim_engine/__init__.py' 2024-03-28T23:13:35,263 adding 'scarcc/sim_engine/checkerboard_workflow.py' 2024-03-28T23:13:35,265 adding 'scarcc/sim_engine/flux_extraction.py' 2024-03-28T23:13:35,267 adding 'scarcc/sim_engine/output.py' 2024-03-28T23:13:35,268 adding 'scarcc/sim_engine/simulation_configuration.py' 2024-03-28T23:13:35,270 adding 'scarcc/sim_engine/simulation_workflow.py' 2024-03-28T23:13:35,272 adding 'scarcc/utils/__init__.py' 2024-03-28T23:13:35,273 adding 'scarcc/utils/util.py' 2024-03-28T23:13:35,275 adding 'scarcc-0.1.4.dist-info/LICENSE' 2024-03-28T23:13:35,277 adding 'scarcc-0.1.4.dist-info/METADATA' 2024-03-28T23:13:35,278 adding 'scarcc-0.1.4.dist-info/WHEEL' 2024-03-28T23:13:35,279 adding 'scarcc-0.1.4.dist-info/top_level.txt' 2024-03-28T23:13:35,281 adding 'scarcc-0.1.4.dist-info/RECORD' 2024-03-28T23:13:35,284 removing build/bdist.linux-armv7l/wheel 2024-03-28T23:13:35,395 Building wheel for scarcc (pyproject.toml): finished with status 'done' 2024-03-28T23:13:35,410 Created wheel for scarcc: filename=scarcc-0.1.4-py3-none-any.whl size=64042 sha256=91b15492bde78fb08ee819c8cb237801aa6f8b074a722610d3c83722a4bcb0b3 2024-03-28T23:13:35,412 Stored in directory: /tmp/pip-ephem-wheel-cache-onptqwt6/wheels/8a/f2/75/9e3683fc2d8d009d761b6cdbd2dca51599f726a2759da01d92 2024-03-28T23:13:35,424 Successfully built scarcc 2024-03-28T23:13:35,430 Removed build tracker: '/tmp/pip-build-tracker-d_8wzc2w'