2024-03-29T03:50:34,675 Created temporary directory: /tmp/pip-build-tracker-k_9kttip 2024-03-29T03:50:34,676 Initialized build tracking at /tmp/pip-build-tracker-k_9kttip 2024-03-29T03:50:34,677 Created build tracker: /tmp/pip-build-tracker-k_9kttip 2024-03-29T03:50:34,677 Entered build tracker: /tmp/pip-build-tracker-k_9kttip 2024-03-29T03:50:34,678 Created temporary directory: /tmp/pip-wheel-zmqviwbe 2024-03-29T03:50:34,681 Created temporary directory: /tmp/pip-ephem-wheel-cache-um9gxvu8 2024-03-29T03:50:34,708 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-29T03:50:34,711 2 location(s) to search for versions of glycopeptidepy: 2024-03-29T03:50:34,711 * https://pypi.org/simple/glycopeptidepy/ 2024-03-29T03:50:34,711 * https://www.piwheels.org/simple/glycopeptidepy/ 2024-03-29T03:50:34,712 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2024-03-29T03:50:34,713 Getting page https://pypi.org/simple/glycopeptidepy/ 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https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-py3-none-any.whl#sha256=95e6c79f3b90ea47db8b424334e6927dc1685c90d0c576d75a202e8183b5bf68 (from https://www.piwheels.org/simple/glycopeptidepy/) 2024-03-29T03:50:35,401 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv6l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2024-03-29T03:50:35,402 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv7l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2024-03-29T03:50:35,403 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv6l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2024-03-29T03:50:35,403 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp39-cp39-linux_armv7l.whl#sha256=0fe3f95737f2249e76bb8a5232177acd2755d76b4e90ee0cd51e81318a5248be (from https://www.piwheels.org/simple/glycopeptidepy/) 2024-03-29T03:50:35,404 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/ 2024-03-29T03:50:35,404 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/ 2024-03-29T03:50:35,426 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2024-03-29T03:50:35,444 Collecting glycopeptidepy==0.0.27 2024-03-29T03:50:35,447 Created temporary directory: /tmp/pip-unpack-e3rzonmx 2024-03-29T03:50:35,672 Downloading glycopeptidepy-0.0.27.tar.gz (1.9 MB) 2024-03-29T03:50:45,851 Added glycopeptidepy==0.0.27 from https://files.pythonhosted.org/packages/73/fb/15a2f195fbc34dcd7cc7ae6cc7e3dead97b71b0fc6b61a83c81cf9a78dc2/glycopeptidepy-0.0.27.tar.gz to build tracker '/tmp/pip-build-tracker-k_9kttip' 2024-03-29T03:50:45,867 Created temporary directory: /tmp/pip-build-env-jy68pj3m 2024-03-29T03:50:45,876 Installing build dependencies: started 2024-03-29T03:50:45,879 Running command pip subprocess to install build dependencies 2024-03-29T03:50:47,373 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-03-29T03:50:49,398 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-03-29T03:50:51,129 Collecting setuptools 2024-03-29T03:50:54,272 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-03-29T03:50:54,611 Collecting wheel 2024-03-29T03:50:57,037 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-03-29T03:50:58,988 Collecting Cython 2024-03-29T03:50:59,010 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.9-cp311-cp311-linux_armv7l.whl (11.7 MB) 2024-03-29T03:51:00,784 Collecting glypy 2024-03-29T03:51:00,897 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.12-cp311-cp311-linux_armv7l.whl (1.8 MB) 2024-03-29T03:51:02,120 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 1.5 MB/s eta 0:00:00 2024-03-29T03:51:05,515 Collecting hjson (from glypy) 2024-03-29T03:51:05,527 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2024-03-29T03:51:05,551 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 2.7 MB/s eta 0:00:00 2024-03-29T03:51:05,873 Collecting six (from glypy) 2024-03-29T03:51:05,897 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2024-03-29T03:51:10,926 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2024-03-29T03:51:11,195 Creating /tmp/pip-build-env-jy68pj3m/overlay/local/bin 2024-03-29T03:51:11,197 changing mode of /tmp/pip-build-env-jy68pj3m/overlay/local/bin/hjson to 755 2024-03-29T03:51:11,446 changing mode of /tmp/pip-build-env-jy68pj3m/overlay/local/bin/wheel to 755 2024-03-29T03:51:25,491 changing mode of /tmp/pip-build-env-jy68pj3m/overlay/local/bin/cygdb to 755 2024-03-29T03:51:25,493 changing mode of /tmp/pip-build-env-jy68pj3m/overlay/local/bin/cython to 755 2024-03-29T03:51:25,495 changing mode of /tmp/pip-build-env-jy68pj3m/overlay/local/bin/cythonize to 755 2024-03-29T03:51:26,920 Successfully installed Cython-3.0.9 glypy-1.0.12 hjson-3.1.0 setuptools-69.2.0 six-1.16.0 wheel-0.43.0 2024-03-29T03:51:27,640 Installing build dependencies: finished with status 'done' 2024-03-29T03:51:27,655 Getting requirements to build wheel: started 2024-03-29T03:51:27,656 Running command Getting requirements to build wheel 2024-03-29T03:51:34,399 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/base.pxd 2024-03-29T03:51:34,399 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:34,450 warning: src/glycopeptidepy/_c/structure/base.pyx:17:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310 2024-03-29T03:51:35,612 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/fragment.pxd 2024-03-29T03:51:35,612 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:38,246 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2024-03-29T03:51:38,246 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:39,456 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2024-03-29T03:51:39,456 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:41,964 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/modification/rule.pxd 2024-03-29T03:51:41,964 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:42,547 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/algorithm.pyx 2024-03-29T03:51:42,548 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:43,176 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/collectiontools.pxd 2024-03-29T03:51:43,177 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:44,400 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/count_table.pxd 2024-03-29T03:51:44,400 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:46,254 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/parser.pxd 2024-03-29T03:51:46,255 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:47,401 warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2024-03-29T03:51:47,639 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2024-03-29T03:51:47,640 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:51,428 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/glycan.pxd 2024-03-29T03:51:51,429 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:52,749 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/modification/modification.pxd 2024-03-29T03:51:52,750 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:53,028 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/modification/source.pxd 2024-03-29T03:51:53,029 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:53,707 /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1/src/glycopeptidepy/_c/structure/sequence_methods.pxd 2024-03-29T03:51:53,708 tree = Parsing.p_module(s, pxd, full_module_name) 2024-03-29T03:51:55,438 Compiling src/glycopeptidepy/_c/collectiontools.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2024-03-29T03:51:55,438 Compiling src/glycopeptidepy/_c/count_table.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2024-03-29T03:51:55,439 Compiling src/glycopeptidepy/_c/parser.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2024-03-29T03:51:55,440 Compiling src/glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/composition/ccomposition.pxd. 2024-03-29T03:51:55,441 Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/composition/ccomposition.pxd. 2024-03-29T03:51:55,441 Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/utils/cenum.pxd. 2024-03-29T03:51:55,441 Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/utils/cenum.pxd. 2024-03-29T03:51:55,442 Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/utils/cenum.pxd. 2024-03-29T03:51:55,442 Compiling src/glycopeptidepy/_c/structure/modification/modification.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/utils/cenum.pxd. 2024-03-29T03:51:55,443 Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/utils/cenum.pxd. 2024-03-29T03:51:55,443 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/composition/ccomposition.pxd. 2024-03-29T03:51:55,444 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/utils/cenum.pxd. 2024-03-29T03:51:55,445 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/glypy/composition/ccomposition.pxd. 2024-03-29T03:51:55,445 Compiling src/glycopeptidepy/_c/algorithm.pyx because it depends on /tmp/pip-build-env-jy68pj3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2024-03-29T03:51:55,446 [ 1/14] Cythonizing src/glycopeptidepy/_c/structure/base.pyx 2024-03-29T03:51:55,446 [ 2/14] Cythonizing src/glycopeptidepy/_c/structure/fragment.pyx 2024-03-29T03:51:55,447 [ 3/14] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2024-03-29T03:51:55,447 [ 4/14] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2024-03-29T03:51:55,448 [ 5/14] Cythonizing src/glycopeptidepy/_c/structure/modification/rule.pyx 2024-03-29T03:51:55,449 [ 6/14] Cythonizing src/glycopeptidepy/_c/algorithm.pyx 2024-03-29T03:51:55,449 [ 7/14] Cythonizing src/glycopeptidepy/_c/collectiontools.pyx 2024-03-29T03:51:55,450 [ 8/14] Cythonizing src/glycopeptidepy/_c/count_table.pyx 2024-03-29T03:51:55,450 [ 9/14] Cythonizing src/glycopeptidepy/_c/parser.pyx 2024-03-29T03:51:55,451 [10/14] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2024-03-29T03:51:55,452 [11/14] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx 2024-03-29T03:51:55,453 [12/14] Cythonizing src/glycopeptidepy/_c/structure/modification/modification.pyx 2024-03-29T03:51:55,453 [13/14] Cythonizing src/glycopeptidepy/_c/structure/modification/source.pyx 2024-03-29T03:51:55,454 [14/14] Cythonizing src/glycopeptidepy/_c/structure/sequence_methods.pyx 2024-03-29T03:51:55,527 running egg_info 2024-03-29T03:51:55,534 writing src/glycopeptidepy.egg-info/PKG-INFO 2024-03-29T03:51:55,537 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2024-03-29T03:51:55,540 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2024-03-29T03:51:55,542 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2024-03-29T03:51:55,594 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:51:55,601 reading manifest template 'MANIFEST.in' 2024-03-29T03:51:55,786 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:51:56,527 Getting requirements to build wheel: finished with status 'done' 2024-03-29T03:51:56,541 Created temporary directory: /tmp/pip-modern-metadata-bb8kuoec 2024-03-29T03:51:56,543 Preparing metadata (pyproject.toml): started 2024-03-29T03:51:56,544 Running command Preparing metadata (pyproject.toml) 2024-03-29T03:51:59,852 running dist_info 2024-03-29T03:51:59,859 creating /tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info 2024-03-29T03:51:59,864 writing /tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/PKG-INFO 2024-03-29T03:51:59,868 writing dependency_links to /tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/dependency_links.txt 2024-03-29T03:51:59,870 writing requirements to /tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/requires.txt 2024-03-29T03:51:59,871 writing top-level names to /tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/top_level.txt 2024-03-29T03:51:59,872 writing manifest file '/tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:51:59,910 reading manifest file '/tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:51:59,912 reading manifest template 'MANIFEST.in' 2024-03-29T03:52:00,078 writing manifest file '/tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:52:00,080 creating '/tmp/pip-modern-metadata-bb8kuoec/glycopeptidepy-0.0.27.dist-info' 2024-03-29T03:52:00,316 Preparing metadata (pyproject.toml): finished with status 'done' 2024-03-29T03:52:00,321 Source in /tmp/pip-wheel-zmqviwbe/glycopeptidepy_21dd62e97704446db9ead4a28c756aa1 has version 0.0.27, which satisfies requirement glycopeptidepy==0.0.27 from https://files.pythonhosted.org/packages/73/fb/15a2f195fbc34dcd7cc7ae6cc7e3dead97b71b0fc6b61a83c81cf9a78dc2/glycopeptidepy-0.0.27.tar.gz 2024-03-29T03:52:00,322 Removed glycopeptidepy==0.0.27 from https://files.pythonhosted.org/packages/73/fb/15a2f195fbc34dcd7cc7ae6cc7e3dead97b71b0fc6b61a83c81cf9a78dc2/glycopeptidepy-0.0.27.tar.gz from build tracker '/tmp/pip-build-tracker-k_9kttip' 2024-03-29T03:52:00,325 Created temporary directory: /tmp/pip-unpack-l62v190z 2024-03-29T03:52:00,326 Created temporary directory: /tmp/pip-unpack-ii_qf98x 2024-03-29T03:52:00,334 Building wheels for collected packages: glycopeptidepy 2024-03-29T03:52:00,338 Created temporary directory: /tmp/pip-wheel-nh96ms5m 2024-03-29T03:52:00,339 Destination directory: /tmp/pip-wheel-nh96ms5m 2024-03-29T03:52:00,341 Building wheel for glycopeptidepy (pyproject.toml): started 2024-03-29T03:52:00,342 Running command Building wheel for glycopeptidepy (pyproject.toml) 2024-03-29T03:52:03,462 running bdist_wheel 2024-03-29T03:52:03,499 running build 2024-03-29T03:52:03,500 running build_py 2024-03-29T03:52:03,508 creating build 2024-03-29T03:52:03,509 creating build/lib.linux-armv7l-cpython-311 2024-03-29T03:52:03,510 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy 2024-03-29T03:52:03,511 copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2024-03-29T03:52:03,514 copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2024-03-29T03:52:03,516 copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2024-03-29T03:52:03,518 copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy 2024-03-29T03:52:03,522 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,523 copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,529 copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,534 copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,582 copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,585 copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,800 copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils 2024-03-29T03:52:03,804 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,805 copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,807 copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,810 copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,813 copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,815 copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,817 copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,819 copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io 2024-03-29T03:52:03,822 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,823 copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,825 copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,827 copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,829 copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,831 copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,834 copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,837 copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,839 copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,841 copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,843 copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure 2024-03-29T03:52:03,847 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2024-03-29T03:52:03,848 copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2024-03-29T03:52:03,851 copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/test 2024-03-29T03:52:03,853 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:03,854 copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:03,856 copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:03,858 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2024-03-29T03:52:03,859 copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2024-03-29T03:52:03,862 copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2024-03-29T03:52:03,865 copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2024-03-29T03:52:03,866 copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv 2024-03-29T03:52:03,869 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/data 2024-03-29T03:52:03,870 copying src/glycopeptidepy/io/cv/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/data 2024-03-29T03:52:03,872 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2024-03-29T03:52:03,873 copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2024-03-29T03:52:03,875 copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2024-03-29T03:52:03,876 copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2024-03-29T03:52:03,879 copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2024-03-29T03:52:03,881 copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence 2024-03-29T03:52:03,884 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:52:03,885 copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:52:03,888 copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:52:03,890 copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:52:03,893 copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:52:03,896 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,897 copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,900 copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,902 copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,904 copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,907 copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,908 copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,910 copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,913 copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification 2024-03-29T03:52:03,916 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2024-03-29T03:52:03,917 copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2024-03-29T03:52:03,919 copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2024-03-29T03:52:03,921 copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2024-03-29T03:52:03,924 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:03,925 copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:03,927 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:03,928 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:03,930 creating build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:03,931 copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:03,932 running egg_info 2024-03-29T03:52:03,937 writing src/glycopeptidepy.egg-info/PKG-INFO 2024-03-29T03:52:03,940 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2024-03-29T03:52:03,941 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2024-03-29T03:52:03,942 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2024-03-29T03:52:03,969 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:52:03,973 reading manifest template 'MANIFEST.in' 2024-03-29T03:52:04,141 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2024-03-29T03:52:04,152 copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,174 copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,176 copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,192 copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,194 copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,196 copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,198 copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,200 copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,225 copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,227 copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,230 copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,280 copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,282 copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c 2024-03-29T03:52:04,285 copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2024-03-29T03:52:04,287 copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data 2024-03-29T03:52:04,407 copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,491 copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,494 copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,498 copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,515 copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,518 copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,520 copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,567 copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,570 copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,574 copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,616 copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,619 copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,622 copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,711 copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,713 copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure 2024-03-29T03:52:04,718 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,780 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,783 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,785 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,841 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,843 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,847 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,906 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,908 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:52:04,912 copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:04,946 copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:04,948 copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:04,950 copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,022 copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,024 copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,027 copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,080 copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,082 copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,084 copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification 2024-03-29T03:52:05,093 running build_ext 2024-03-29T03:52:05,100 building 'glycopeptidepy._c.collectiontools' extension 2024-03-29T03:52:05,100 creating build/temp.linux-armv7l-cpython-311 2024-03-29T03:52:05,101 creating build/temp.linux-armv7l-cpython-311/src 2024-03-29T03:52:05,102 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy 2024-03-29T03:52:05,103 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c 2024-03-29T03:52:05,104 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o 2024-03-29T03:52:12,551 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:52:12,730 building 'glycopeptidepy._c.count_table' extension 2024-03-29T03:52:12,731 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o 2024-03-29T03:52:14,529 src/glycopeptidepy/_c/count_table.c:4512:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2024-03-29T03:52:14,530 4512 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2024-03-29T03:52:14,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-03-29T03:52:14,533 src/glycopeptidepy/_c/count_table.c:4241:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2024-03-29T03:52:14,534 4241 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2024-03-29T03:52:14,534 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-03-29T03:52:14,537 src/glycopeptidepy/_c/count_table.c:3999:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2024-03-29T03:52:14,538 3999 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2024-03-29T03:52:14,539 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-03-29T03:52:30,048 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/count_table.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:52:30,202 building 'glycopeptidepy._c.parser' extension 2024-03-29T03:52:30,202 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o 2024-03-29T03:52:30,605 In file included from src/glycopeptidepy/_c/parser.c:1231: 2024-03-29T03:52:30,605 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2024-03-29T03:52:30,606 38 | #define PyInt_Check PyLong_Check 2024-03-29T03:52:30,607 | 2024-03-29T03:52:30,607 src/glycopeptidepy/_c/parser.c:1128: note: this is the location of the previous definition 2024-03-29T03:52:30,608 1128 | #define PyInt_Check(op) PyLong_Check(op) 2024-03-29T03:52:30,609 | 2024-03-29T03:52:30,609 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2024-03-29T03:52:30,610 39 | #define PyInt_CheckExact PyLong_CheckExact 2024-03-29T03:52:30,610 | 2024-03-29T03:52:30,611 src/glycopeptidepy/_c/parser.c:1129: note: this is the location of the previous definition 2024-03-29T03:52:30,612 1129 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2024-03-29T03:52:30,613 | 2024-03-29T03:52:30,624 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2024-03-29T03:52:30,627 src/glycopeptidepy/_c/parser.c:3662:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:52:30,628 3662 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2024-03-29T03:52:30,629 | ^ 2024-03-29T03:52:30,697 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2024-03-29T03:52:30,704 src/glycopeptidepy/_c/parser.c:7771:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:52:30,705 7771 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2024-03-29T03:52:30,705 | ^ 2024-03-29T03:52:38,203 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/parser.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:52:38,320 building 'glycopeptidepy._c.structure.base' extension 2024-03-29T03:52:38,320 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure 2024-03-29T03:52:38,321 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o 2024-03-29T03:52:59,936 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:53:00,080 building 'glycopeptidepy._c.structure.fragment' extension 2024-03-29T03:53:00,081 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o 2024-03-29T03:53:00,462 In file included from src/glycopeptidepy/_c/structure/fragment.c:1232: 2024-03-29T03:53:00,463 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2024-03-29T03:53:00,464 38 | #define PyInt_Check PyLong_Check 2024-03-29T03:53:00,464 | 2024-03-29T03:53:00,465 src/glycopeptidepy/_c/structure/fragment.c:1128: note: this is the location of the previous definition 2024-03-29T03:53:00,465 1128 | #define PyInt_Check(op) PyLong_Check(op) 2024-03-29T03:53:00,466 | 2024-03-29T03:53:00,466 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2024-03-29T03:53:00,467 39 | #define PyInt_CheckExact PyLong_CheckExact 2024-03-29T03:53:00,467 | 2024-03-29T03:53:00,468 src/glycopeptidepy/_c/structure/fragment.c:1129: note: this is the location of the previous definition 2024-03-29T03:53:00,468 1129 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2024-03-29T03:53:00,469 | 2024-03-29T03:53:00,509 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2024-03-29T03:53:00,514 src/glycopeptidepy/_c/structure/fragment.c:5863:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:53:00,515 5863 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2024-03-29T03:53:00,515 | ^ 2024-03-29T03:53:00,516 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2024-03-29T03:53:00,522 src/glycopeptidepy/_c/structure/fragment.c:6092:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:53:00,523 6092 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2024-03-29T03:53:00,523 | ^ 2024-03-29T03:53:00,762 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2024-03-29T03:53:00,775 src/glycopeptidepy/_c/structure/fragment.c:14087:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:53:00,776 14087 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2024-03-29T03:53:00,777 | ^ 2024-03-29T03:53:00,794 src/glycopeptidepy/_c/structure/fragment.c:14402:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:53:00,794 14402 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2024-03-29T03:53:00,795 | ^ 2024-03-29T03:53:00,808 src/glycopeptidepy/_c/structure/fragment.c:14575:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:53:00,809 14575 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2024-03-29T03:53:00,810 | ^ 2024-03-29T03:53:00,822 src/glycopeptidepy/_c/structure/fragment.c:14752:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-03-29T03:53:00,823 14752 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2024-03-29T03:53:00,824 | ^ 2024-03-29T03:53:37,425 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:53:37,866 building 'glycopeptidepy._c.structure.constants' extension 2024-03-29T03:53:37,867 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o 2024-03-29T03:53:44,255 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:53:44,368 building 'glycopeptidepy._c.structure.glycan' extension 2024-03-29T03:53:44,368 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o 2024-03-29T03:54:07,345 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:54:07,528 building 'glycopeptidepy._c.structure.sequence_methods' extension 2024-03-29T03:54:07,529 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o 2024-03-29T03:54:08,208 src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2024-03-29T03:54:08,221 src/glycopeptidepy/_c/structure/sequence_methods.c:14796:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-03-29T03:54:08,222 14796 | __pyx_t_7 = (__pyx_v_position_ >= __pyx_t_8); 2024-03-29T03:54:08,223 | ^~ 2024-03-29T03:54:28,628 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:54:28,832 building 'glycopeptidepy._c.structure.modification.rule' extension 2024-03-29T03:54:28,833 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification 2024-03-29T03:54:28,834 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o 2024-03-29T03:54:42,227 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:54:42,361 building 'glycopeptidepy._c.structure.modification.modification' extension 2024-03-29T03:54:42,362 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o 2024-03-29T03:54:50,799 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:54:50,919 building 'glycopeptidepy._c.structure.modification.source' extension 2024-03-29T03:54:50,919 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o 2024-03-29T03:54:59,143 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:54:59,268 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2024-03-29T03:54:59,268 creating build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:54:59,269 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2024-03-29T03:55:08,268 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:55:08,388 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2024-03-29T03:55:08,388 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2024-03-29T03:56:00,054 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:56:00,280 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2024-03-29T03:56:00,281 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2024-03-29T03:56:01,436 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2024-03-29T03:56:01,449 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12921:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2024-03-29T03:56:01,449 12921 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2024-03-29T03:56:01,450 | ^ 2024-03-29T03:56:01,462 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:12938:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2024-03-29T03:56:01,462 12938 | for (__pyx_t_9 = 1; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2024-03-29T03:56:01,463 | ^ 2024-03-29T03:56:01,601 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2024-03-29T03:56:01,617 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17235:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-29T03:56:01,618 17235 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2024-03-29T03:56:01,619 | ^ 2024-03-29T03:56:01,639 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2024-03-29T03:56:01,656 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17902:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2024-03-29T03:56:01,657 17902 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2024-03-29T03:56:01,658 | ^ 2024-03-29T03:56:01,714 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2024-03-29T03:56:01,734 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:19799:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2024-03-29T03:56:01,734 19799 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_15; __pyx_t_9+=1) { 2024-03-29T03:56:01,735 | ^ 2024-03-29T03:56:01,787 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2024-03-29T03:56:01,808 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21116:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-29T03:56:01,808 21116 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2024-03-29T03:56:01,809 | ^ 2024-03-29T03:56:01,830 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21175:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-29T03:56:01,830 21175 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2024-03-29T03:56:01,831 | ^ 2024-03-29T03:56:01,852 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:21234:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-03-29T03:56:01,852 21234 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2024-03-29T03:56:01,853 | ^ 2024-03-29T03:56:34,990 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:56:35,195 building 'glycopeptidepy._c.algorithm' extension 2024-03-29T03:56:35,195 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.11 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o 2024-03-29T03:56:49,750 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/glycopeptidepy/_c/algorithm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so 2024-03-29T03:56:49,891 installing to build/bdist.linux-armv7l/wheel 2024-03-29T03:56:49,892 running install 2024-03-29T03:56:49,917 running install_lib 2024-03-29T03:56:49,925 creating build/bdist.linux-armv7l 2024-03-29T03:56:49,926 creating build/bdist.linux-armv7l/wheel 2024-03-29T03:56:49,928 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2024-03-29T03:56:49,930 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2024-03-29T03:56:49,933 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,934 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,936 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,938 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,941 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,943 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,945 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2024-03-29T03:56:49,948 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2024-03-29T03:56:49,950 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2024-03-29T03:56:49,953 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,954 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,956 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,960 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,963 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,965 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,967 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,969 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2024-03-29T03:56:49,973 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2024-03-29T03:56:49,974 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2024-03-29T03:56:49,978 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2024-03-29T03:56:49,980 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2024-03-29T03:56:49,982 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2024-03-29T03:56:49,985 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv/data 2024-03-29T03:56:49,986 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/io/cv/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv/data 2024-03-29T03:56:49,988 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:49,990 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:49,992 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2024-03-29T03:56:49,994 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2024-03-29T03:56:49,997 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2024-03-29T03:56:49,999 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2024-03-29T03:56:50,002 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2024-03-29T03:56:50,005 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2024-03-29T03:56:50,007 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,010 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,012 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,015 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,019 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:56:50,020 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:56:50,024 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:56:50,026 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:56:50,030 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2024-03-29T03:56:50,032 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,036 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,038 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,041 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,042 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,045 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,047 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,049 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,052 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,054 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,056 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2024-03-29T03:56:50,057 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2024-03-29T03:56:50,170 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2024-03-29T03:56:50,172 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2024-03-29T03:56:50,174 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2024-03-29T03:56:50,176 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2024-03-29T03:56:50,179 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,183 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2024-03-29T03:56:50,186 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,188 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2024-03-29T03:56:50,192 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2024-03-29T03:56:50,193 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2024-03-29T03:56:50,196 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2024-03-29T03:56:50,198 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2024-03-29T03:56:50,203 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,204 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,206 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,240 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,242 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,313 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,331 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,350 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,360 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,375 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,377 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,380 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,382 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:50,386 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,388 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,392 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,394 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,453 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,456 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,459 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,461 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,525 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,527 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:50,572 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,573 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,635 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,638 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,653 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,656 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,657 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,698 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,922 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:50,975 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:51,016 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:51,019 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:51,022 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:51,024 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2024-03-29T03:56:51,026 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,038 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,068 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,071 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,081 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,084 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,174 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,175 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,177 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,179 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,181 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,183 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,194 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,205 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,207 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,223 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,225 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,238 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,255 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,257 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,259 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2024-03-29T03:56:51,295 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,298 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,301 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,345 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,439 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,468 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2024-03-29T03:56:51,471 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,473 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,489 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,542 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,544 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,546 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,550 copying build/lib.linux-armv7l-cpython-311/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2024-03-29T03:56:51,553 running install_egg_info 2024-03-29T03:56:51,573 Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.27-py3.11.egg-info 2024-03-29T03:56:51,590 running install_scripts 2024-03-29T03:56:51,662 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.27.dist-info/WHEEL 2024-03-29T03:56:51,665 creating '/tmp/pip-wheel-nh96ms5m/.tmp-m50y74j_/glycopeptidepy-0.0.27-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-03-29T03:56:51,667 adding 'glycopeptidepy/__init__.py' 2024-03-29T03:56:51,670 adding 'glycopeptidepy/algorithm.py' 2024-03-29T03:56:51,672 adding 'glycopeptidepy/enzyme.py' 2024-03-29T03:56:51,674 adding 'glycopeptidepy/version.py' 2024-03-29T03:56:51,676 adding 'glycopeptidepy/_c/__init__.py' 2024-03-29T03:56:51,735 adding 'glycopeptidepy/_c/algorithm.c' 2024-03-29T03:56:51,886 adding 'glycopeptidepy/_c/algorithm.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:51,892 adding 'glycopeptidepy/_c/algorithm.pyx' 2024-03-29T03:56:51,930 adding 'glycopeptidepy/_c/collectiontools.c' 2024-03-29T03:56:52,003 adding 'glycopeptidepy/_c/collectiontools.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:52,006 adding 'glycopeptidepy/_c/collectiontools.pxd' 2024-03-29T03:56:52,008 adding 'glycopeptidepy/_c/collectiontools.pyx' 2024-03-29T03:56:52,009 adding 'glycopeptidepy/_c/compat.h' 2024-03-29T03:56:52,011 adding 'glycopeptidepy/_c/compat.pxd' 2024-03-29T03:56:52,077 adding 'glycopeptidepy/_c/count_table.c' 2024-03-29T03:56:52,231 adding 'glycopeptidepy/_c/count_table.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:52,237 adding 'glycopeptidepy/_c/count_table.pxd' 2024-03-29T03:56:52,241 adding 'glycopeptidepy/_c/count_table.pyx' 2024-03-29T03:56:52,242 adding 'glycopeptidepy/_c/cythonize.py' 2024-03-29T03:56:52,286 adding 'glycopeptidepy/_c/parser.c' 2024-03-29T03:56:52,369 adding 'glycopeptidepy/_c/parser.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:52,373 adding 'glycopeptidepy/_c/parser.pxd' 2024-03-29T03:56:52,375 adding 'glycopeptidepy/_c/parser.pyx' 2024-03-29T03:56:52,377 adding 'glycopeptidepy/_c/structure/__init__.py' 2024-03-29T03:56:52,453 adding 'glycopeptidepy/_c/structure/base.c' 2024-03-29T03:56:52,657 adding 'glycopeptidepy/_c/structure/base.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:52,665 adding 'glycopeptidepy/_c/structure/base.pxd' 2024-03-29T03:56:52,667 adding 'glycopeptidepy/_c/structure/base.pyx' 2024-03-29T03:56:52,700 adding 'glycopeptidepy/_c/structure/constants.c' 2024-03-29T03:56:52,769 adding 'glycopeptidepy/_c/structure/constants.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:52,772 adding 'glycopeptidepy/_c/structure/constants.pxd' 2024-03-29T03:56:52,773 adding 'glycopeptidepy/_c/structure/constants.pyx' 2024-03-29T03:56:52,886 adding 'glycopeptidepy/_c/structure/fragment.c' 2024-03-29T03:56:53,194 adding 'glycopeptidepy/_c/structure/fragment.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:53,204 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2024-03-29T03:56:53,208 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2024-03-29T03:56:53,283 adding 'glycopeptidepy/_c/structure/glycan.c' 2024-03-29T03:56:53,494 adding 'glycopeptidepy/_c/structure/glycan.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:53,501 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2024-03-29T03:56:53,503 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2024-03-29T03:56:53,577 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2024-03-29T03:56:53,766 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:53,773 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2024-03-29T03:56:53,776 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2024-03-29T03:56:53,778 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2024-03-29T03:56:53,821 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2024-03-29T03:56:53,907 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:53,911 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2024-03-29T03:56:53,912 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2024-03-29T03:56:54,020 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2024-03-29T03:56:54,313 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:54,323 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2024-03-29T03:56:54,327 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2024-03-29T03:56:54,477 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2024-03-29T03:56:54,877 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:54,890 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2024-03-29T03:56:54,893 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2024-03-29T03:56:54,895 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2024-03-29T03:56:54,935 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2024-03-29T03:56:55,021 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:55,024 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2024-03-29T03:56:55,026 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2024-03-29T03:56:55,079 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2024-03-29T03:56:55,209 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:55,215 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2024-03-29T03:56:55,216 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2024-03-29T03:56:55,259 adding 'glycopeptidepy/_c/structure/modification/source.c' 2024-03-29T03:56:55,349 adding 'glycopeptidepy/_c/structure/modification/source.cpython-311-arm-linux-gnueabihf.so' 2024-03-29T03:56:55,352 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2024-03-29T03:56:55,353 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2024-03-29T03:56:55,355 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2024-03-29T03:56:55,357 adding 'glycopeptidepy/io/__init__.py' 2024-03-29T03:56:55,359 adding 'glycopeptidepy/io/annotation.py' 2024-03-29T03:56:55,363 adding 'glycopeptidepy/io/fasta.py' 2024-03-29T03:56:55,365 adding 'glycopeptidepy/io/mzid.py' 2024-03-29T03:56:55,367 adding 'glycopeptidepy/io/nextprot.py' 2024-03-29T03:56:55,370 adding 'glycopeptidepy/io/uniprot.py' 2024-03-29T03:56:55,371 adding 'glycopeptidepy/io/utils.py' 2024-03-29T03:56:55,373 adding 'glycopeptidepy/io/cv/__init__.py' 2024-03-29T03:56:55,375 adding 'glycopeptidepy/io/cv/peff.py' 2024-03-29T03:56:55,376 adding 'glycopeptidepy/io/cv/term.py' 2024-03-29T03:56:55,378 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2024-03-29T03:56:55,380 adding 'glycopeptidepy/io/cv/data/__init__.py' 2024-03-29T03:56:55,382 adding 'glycopeptidepy/structure/__init__.py' 2024-03-29T03:56:55,384 adding 'glycopeptidepy/structure/base.py' 2024-03-29T03:56:55,385 adding 'glycopeptidepy/structure/composition.py' 2024-03-29T03:56:55,386 adding 'glycopeptidepy/structure/constants.py' 2024-03-29T03:56:55,389 adding 'glycopeptidepy/structure/fragment.py' 2024-03-29T03:56:55,391 adding 'glycopeptidepy/structure/glycan.py' 2024-03-29T03:56:55,393 adding 'glycopeptidepy/structure/parser.py' 2024-03-29T03:56:55,395 adding 'glycopeptidepy/structure/residue.py' 2024-03-29T03:56:55,397 adding 'glycopeptidepy/structure/sequence_composition.py' 2024-03-29T03:56:55,398 adding 'glycopeptidepy/structure/terminal_group.py' 2024-03-29T03:56:55,400 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2024-03-29T03:56:55,401 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2024-03-29T03:56:55,406 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2024-03-29T03:56:55,409 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2024-03-29T03:56:55,411 adding 'glycopeptidepy/structure/modification/__init__.py' 2024-03-29T03:56:55,413 adding 'glycopeptidepy/structure/modification/descriptors.py' 2024-03-29T03:56:55,415 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2024-03-29T03:56:55,416 adding 'glycopeptidepy/structure/modification/modification.py' 2024-03-29T03:56:55,420 adding 'glycopeptidepy/structure/modification/rule.py' 2024-03-29T03:56:55,422 adding 'glycopeptidepy/structure/modification/source.py' 2024-03-29T03:56:55,424 adding 'glycopeptidepy/structure/modification/target.py' 2024-03-29T03:56:55,426 adding 'glycopeptidepy/structure/modification/utils.py' 2024-03-29T03:56:55,427 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2024-03-29T03:56:55,429 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2024-03-29T03:56:55,430 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2024-03-29T03:56:55,495 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2024-03-29T03:56:55,509 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2024-03-29T03:56:55,511 adding 'glycopeptidepy/structure/sequence/__init__.py' 2024-03-29T03:56:55,513 adding 'glycopeptidepy/structure/sequence/base.py' 2024-03-29T03:56:55,515 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2024-03-29T03:56:55,517 adding 'glycopeptidepy/structure/sequence/implementation.py' 2024-03-29T03:56:55,518 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2024-03-29T03:56:55,520 adding 'glycopeptidepy/test/__init__.py' 2024-03-29T03:56:55,522 adding 'glycopeptidepy/test/sequence_test_suite.py' 2024-03-29T03:56:55,524 adding 'glycopeptidepy/utils/__init__.py' 2024-03-29T03:56:55,525 adding 'glycopeptidepy/utils/collectiontools.py' 2024-03-29T03:56:55,528 adding 'glycopeptidepy/utils/intervals.py' 2024-03-29T03:56:55,530 adding 'glycopeptidepy/utils/iterators.py' 2024-03-29T03:56:55,531 adding 'glycopeptidepy/utils/memoize.py' 2024-03-29T03:56:55,533 adding 'glycopeptidepy/utils/sequence_tree.py' 2024-03-29T03:56:55,535 adding 'glycopeptidepy-0.0.27.dist-info/METADATA' 2024-03-29T03:56:55,536 adding 'glycopeptidepy-0.0.27.dist-info/WHEEL' 2024-03-29T03:56:55,537 adding 'glycopeptidepy-0.0.27.dist-info/top_level.txt' 2024-03-29T03:56:55,539 adding 'glycopeptidepy-0.0.27.dist-info/RECORD' 2024-03-29T03:56:55,822 removing build/bdist.linux-armv7l/wheel 2024-03-29T03:56:56,019 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2024-03-29T03:56:56,173 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.27-cp311-cp311-linux_armv7l.whl size=6677226 sha256=68e039c0118efb1b097d2bb852b1e2db51a528deda187f3a01275b42d954660d 2024-03-29T03:56:56,175 Stored in directory: /tmp/pip-ephem-wheel-cache-um9gxvu8/wheels/69/71/06/e6f12a98e09f29d33fd3d5a20563368d60a404b137f17184a7 2024-03-29T03:56:56,190 Successfully built glycopeptidepy 2024-03-29T03:56:56,512 Removed build tracker: '/tmp/pip-build-tracker-k_9kttip'