2024-04-04T20:20:58,992 Created temporary directory: /tmp/pip-build-tracker-_4z5091y 2024-04-04T20:20:58,994 Initialized build tracking at /tmp/pip-build-tracker-_4z5091y 2024-04-04T20:20:58,994 Created build tracker: /tmp/pip-build-tracker-_4z5091y 2024-04-04T20:20:58,995 Entered build tracker: /tmp/pip-build-tracker-_4z5091y 2024-04-04T20:20:58,995 Created temporary directory: /tmp/pip-wheel-yn6zibj2 2024-04-04T20:20:58,999 Created temporary directory: /tmp/pip-ephem-wheel-cache-wg68va8_ 2024-04-04T20:20:59,025 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-04T20:20:59,029 2 location(s) to search for versions of figeno: 2024-04-04T20:20:59,029 * https://pypi.org/simple/figeno/ 2024-04-04T20:20:59,029 * https://www.piwheels.org/simple/figeno/ 2024-04-04T20:20:59,029 Fetching project page and analyzing links: https://pypi.org/simple/figeno/ 2024-04-04T20:20:59,030 Getting page https://pypi.org/simple/figeno/ 2024-04-04T20:20:59,032 Found index url https://pypi.org/simple/ 2024-04-04T20:20:59,247 Fetched page https://pypi.org/simple/figeno/ as application/vnd.pypi.simple.v1+json 2024-04-04T20:20:59,251 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/ee/c3/54db836641d4a607bc395ab2a5672923216c04f27d64c4836262babe0677/figeno-0.0.2-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,252 Found link https://files.pythonhosted.org/packages/53/e4/a9bd6b3ec25130d0168be05940cf1053a2c45e6de2ddfaea31ed52b7541c/figeno-0.0.2.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.0.2 2024-04-04T20:20:59,252 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/7d/72/2ad97a122d46f6749cf47e22417a143a62d6486f68f7a854ff24c3cf107f/figeno-0.3.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,253 Found link https://files.pythonhosted.org/packages/ad/b7/9248f8efba4e9c58e5fe317b995dc5c7c89f783bfaab7a87e60a3304f324/figeno-0.3.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.0 2024-04-04T20:20:59,254 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/15/c6/28eb3b1ef01132bf31f692d8d9cff5e3b0097317925ec03976a574b3c45e/figeno-0.3.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,255 Found link https://files.pythonhosted.org/packages/cb/22/db1fba1f5fa16f9ca9ee81f6ab607325f5ebfdce63312a220828aff3963b/figeno-0.3.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 0.3.1 2024-04-04T20:20:59,256 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/29/be/106c231fcd52ced3c0e2b3ea11f035c075e13c99a080a5924982aba28830/figeno-1.0.0-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,257 Found link https://files.pythonhosted.org/packages/39/3b/13b3de6146c6d49c5adfb6a57723132ff3befee780901ee85bd4319fcc02/figeno-1.0.0.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.0 2024-04-04T20:20:59,257 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/3d/05/bfae29040060d48f1e2c3752dc5f862752d97900375229aaf9f53e2e5543/figeno-1.0.1-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,258 Found link https://files.pythonhosted.org/packages/18/ff/5d0a7c219651410554645653d7bb4a14afeb8529e9974cb153d4f478c07f/figeno-1.0.1.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.1 2024-04-04T20:20:59,259 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/60/88/6f39368e503a4fc9949a1c0d6f98b40527662430ac44099bc3995a752926/figeno-1.0.2-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,260 Found link https://files.pythonhosted.org/packages/d7/e4/dd54172a1c380008fbff92ff246a669dbb6074c6c82d02f577f69b09fc47/figeno-1.0.2.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.2 2024-04-04T20:20:59,261 Skipping link: No binaries permitted for figeno: https://files.pythonhosted.org/packages/c4/f0/8e0b34cf6ad6f595fab8b41f7073568beff24c1ee4b00d0d76d9cee286e2/figeno-1.0.3-py3-none-any.whl (from https://pypi.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:20:59,262 Found link https://files.pythonhosted.org/packages/11/f5/c6eeaf80c9b9ef36a9df83ff951b7a90200a7b4397d33dcb224c6370d125/figeno-1.0.3.tar.gz (from https://pypi.org/simple/figeno/) (requires-python:>=3.7), version: 1.0.3 2024-04-04T20:20:59,263 Fetching project page and analyzing links: https://www.piwheels.org/simple/figeno/ 2024-04-04T20:20:59,263 Getting page https://www.piwheels.org/simple/figeno/ 2024-04-04T20:20:59,265 Found index url https://www.piwheels.org/simple/ 2024-04-04T20:21:00,724 Fetched page https://www.piwheels.org/simple/figeno/ as text/html 2024-04-04T20:21:00,731 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-1.0.2-py3-none-any.whl#sha256=c37df1e1f018e0ff05daf085b8974bab9909cef7e234ba7f50dd7cb3d39ed3f1 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:21:00,732 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-1.0.1-py3-none-any.whl#sha256=e49ea00bfb880572dfa26b560f239961c2fa066c497ad03430b3bd10dc57923e (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:21:00,733 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-1.0.0-py3-none-any.whl#sha256=45b3110c25c2f7b613131d1fe9e2030de18dee2f1c408c207f5dce90e1b9cc92 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:21:00,734 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.1-py3-none-any.whl#sha256=0a2fa01b4e74455ad540ac82d0f36fc48571690fb8c1d1cdfeba1112693d143a (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:21:00,735 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.3.0-py3-none-any.whl#sha256=410880abf37efd537f26d07d0c783dbef02bd16e9cf91779167f8de1c5dc7f0f (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:21:00,736 Skipping link: No binaries permitted for figeno: https://www.piwheels.org/simple/figeno/figeno-0.0.2-py3-none-any.whl#sha256=f6d27564c7ff816ff67439cd0ed3db2adbb6d161ac221f9acb3322b0062632d7 (from https://www.piwheels.org/simple/figeno/) (requires-python:>=3.7) 2024-04-04T20:21:00,737 Skipping link: not a file: https://www.piwheels.org/simple/figeno/ 2024-04-04T20:21:00,738 Skipping link: not a file: https://pypi.org/simple/figeno/ 2024-04-04T20:21:00,776 Given no hashes to check 1 links for project 'figeno': discarding no candidates 2024-04-04T20:21:00,809 Collecting figeno==1.0.3 2024-04-04T20:21:00,812 Created temporary directory: /tmp/pip-unpack-f1ds520l 2024-04-04T20:21:01,052 Downloading figeno-1.0.3.tar.gz (14.4 MB) 2024-04-04T20:21:04,956 Added figeno==1.0.3 from https://files.pythonhosted.org/packages/11/f5/c6eeaf80c9b9ef36a9df83ff951b7a90200a7b4397d33dcb224c6370d125/figeno-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-_4z5091y' 2024-04-04T20:21:04,960 Created temporary directory: /tmp/pip-build-env-mjr_7vpo 2024-04-04T20:21:04,965 Installing build dependencies: started 2024-04-04T20:21:04,966 Running command pip subprocess to install build dependencies 2024-04-04T20:21:06,374 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-04T20:21:06,902 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-04T20:21:09,107 Collecting setuptools>=61.0 2024-04-04T20:21:13,476 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.2.0-py3-none-any.whl (821 kB) 2024-04-04T20:21:16,444 Installing collected packages: setuptools 2024-04-04T20:21:18,705 Successfully installed setuptools-69.2.0 2024-04-04T20:21:19,269 Installing build dependencies: finished with status 'done' 2024-04-04T20:21:19,272 Getting requirements to build wheel: started 2024-04-04T20:21:19,273 Running command Getting requirements to build wheel 2024-04-04T20:21:20,044 running egg_info 2024-04-04T20:21:20,048 writing figeno.egg-info/PKG-INFO 2024-04-04T20:21:20,051 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-04-04T20:21:20,053 writing entry points to figeno.egg-info/entry_points.txt 2024-04-04T20:21:20,054 writing requirements to figeno.egg-info/requires.txt 2024-04-04T20:21:20,055 writing top-level names to figeno.egg-info/top_level.txt 2024-04-04T20:21:20,074 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:20,079 reading manifest template 'MANIFEST.in' 2024-04-04T20:21:20,091 adding license file 'LICENSE' 2024-04-04T20:21:20,095 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:20,205 Getting requirements to build wheel: finished with status 'done' 2024-04-04T20:21:20,214 Installing backend dependencies: started 2024-04-04T20:21:20,215 Running command pip subprocess to install backend dependencies 2024-04-04T20:21:21,350 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-04-04T20:21:21,881 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-04-04T20:21:23,456 Collecting wheel 2024-04-04T20:21:32,535 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-04-04T20:21:34,806 Installing collected packages: wheel 2024-04-04T20:21:35,032 Creating /tmp/pip-build-env-mjr_7vpo/normal/local/bin 2024-04-04T20:21:35,034 changing mode of /tmp/pip-build-env-mjr_7vpo/normal/local/bin/wheel to 755 2024-04-04T20:21:35,046 Successfully installed wheel-0.43.0 2024-04-04T20:21:35,571 Installing backend dependencies: finished with status 'done' 2024-04-04T20:21:35,573 Created temporary directory: /tmp/pip-modern-metadata-an91nh1x 2024-04-04T20:21:35,576 Preparing metadata (pyproject.toml): started 2024-04-04T20:21:35,577 Running command Preparing metadata (pyproject.toml) 2024-04-04T20:21:36,378 running dist_info 2024-04-04T20:21:36,384 creating /tmp/pip-modern-metadata-an91nh1x/figeno.egg-info 2024-04-04T20:21:36,388 writing /tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/PKG-INFO 2024-04-04T20:21:36,391 writing dependency_links to /tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/dependency_links.txt 2024-04-04T20:21:36,393 writing entry points to /tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/entry_points.txt 2024-04-04T20:21:36,394 writing requirements to /tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/requires.txt 2024-04-04T20:21:36,396 writing top-level names to /tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/top_level.txt 2024-04-04T20:21:36,397 writing manifest file '/tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:36,417 reading manifest file '/tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:36,419 reading manifest template 'MANIFEST.in' 2024-04-04T20:21:36,430 adding license file 'LICENSE' 2024-04-04T20:21:36,433 writing manifest file '/tmp/pip-modern-metadata-an91nh1x/figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:36,434 creating '/tmp/pip-modern-metadata-an91nh1x/figeno-1.0.3.dist-info' 2024-04-04T20:21:36,587 Preparing metadata (pyproject.toml): finished with status 'done' 2024-04-04T20:21:36,593 Source in /tmp/pip-wheel-yn6zibj2/figeno_92dc684716954222b892e6b959736778 has version 1.0.3, which satisfies requirement figeno==1.0.3 from https://files.pythonhosted.org/packages/11/f5/c6eeaf80c9b9ef36a9df83ff951b7a90200a7b4397d33dcb224c6370d125/figeno-1.0.3.tar.gz 2024-04-04T20:21:36,594 Removed figeno==1.0.3 from https://files.pythonhosted.org/packages/11/f5/c6eeaf80c9b9ef36a9df83ff951b7a90200a7b4397d33dcb224c6370d125/figeno-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-_4z5091y' 2024-04-04T20:21:36,599 Created temporary directory: /tmp/pip-unpack-3z23myyu 2024-04-04T20:21:36,600 Created temporary directory: /tmp/pip-unpack-1lskv9ep 2024-04-04T20:21:36,618 Building wheels for collected packages: figeno 2024-04-04T20:21:36,623 Created temporary directory: /tmp/pip-wheel-xlg96c2k 2024-04-04T20:21:36,623 Destination directory: /tmp/pip-wheel-xlg96c2k 2024-04-04T20:21:36,625 Building wheel for figeno (pyproject.toml): started 2024-04-04T20:21:36,626 Running command Building wheel for figeno (pyproject.toml) 2024-04-04T20:21:37,369 running bdist_wheel 2024-04-04T20:21:37,384 running build 2024-04-04T20:21:37,385 running build_py 2024-04-04T20:21:37,389 creating build 2024-04-04T20:21:37,390 creating build/lib 2024-04-04T20:21:37,391 creating build/lib/figeno 2024-04-04T20:21:37,392 copying figeno/track_sv.py -> build/lib/figeno 2024-04-04T20:21:37,395 copying figeno/__init__.py -> build/lib/figeno 2024-04-04T20:21:37,397 copying figeno/track_bigwig.py -> build/lib/figeno 2024-04-04T20:21:37,399 copying figeno/track_hic.py -> build/lib/figeno 2024-04-04T20:21:37,402 copying figeno/figeno.py -> build/lib/figeno 2024-04-04T20:21:37,405 copying figeno/genes.py -> build/lib/figeno 2024-04-04T20:21:37,407 copying figeno/track_basemodfreq.py -> build/lib/figeno 2024-04-04T20:21:37,412 copying figeno/track_genes.py -> build/lib/figeno 2024-04-04T20:21:37,415 copying figeno/track_chr.py -> build/lib/figeno 2024-04-04T20:21:37,418 copying figeno/track_ase.py -> build/lib/figeno 2024-04-04T20:21:37,420 copying figeno/ase.py -> build/lib/figeno 2024-04-04T20:21:37,422 copying figeno/bam.py -> build/lib/figeno 2024-04-04T20:21:37,424 copying figeno/track_alignments.py -> build/lib/figeno 2024-04-04T20:21:37,427 copying figeno/track_bed.py -> build/lib/figeno 2024-04-04T20:21:37,429 copying figeno/vcf.py -> build/lib/figeno 2024-04-04T20:21:37,430 copying figeno/track_coverage.py -> build/lib/figeno 2024-04-04T20:21:37,432 copying figeno/utils.py -> build/lib/figeno 2024-04-04T20:21:37,434 copying figeno/track_copynumber.py -> build/lib/figeno 2024-04-04T20:21:37,438 creating build/lib/figeno/data 2024-04-04T20:21:37,439 copying figeno/data/__init__.py -> build/lib/figeno/data 2024-04-04T20:21:37,441 creating build/lib/figeno/cli 2024-04-04T20:21:37,442 copying figeno/cli/__init__.py -> build/lib/figeno/cli 2024-04-04T20:21:37,443 copying figeno/cli/gui.py -> build/lib/figeno/cli 2024-04-04T20:21:37,445 copying figeno/cli/init.py -> build/lib/figeno/cli 2024-04-04T20:21:37,447 copying figeno/cli/make.py -> build/lib/figeno/cli 2024-04-04T20:21:37,449 copying figeno/cli/cli.py -> build/lib/figeno/cli 2024-04-04T20:21:37,452 creating build/lib/figeno/gui 2024-04-04T20:21:37,453 copying figeno/gui/__init__.py -> build/lib/figeno/gui 2024-04-04T20:21:37,455 copying figeno/gui/gui_browser.py -> build/lib/figeno/gui 2024-04-04T20:21:37,457 copying figeno/gui/gui_webview.py -> build/lib/figeno/gui 2024-04-04T20:21:37,460 copying figeno/gui/gui_server.py -> build/lib/figeno/gui 2024-04-04T20:21:37,462 running egg_info 2024-04-04T20:21:37,466 writing figeno.egg-info/PKG-INFO 2024-04-04T20:21:37,469 writing dependency_links to figeno.egg-info/dependency_links.txt 2024-04-04T20:21:37,471 writing entry points to figeno.egg-info/entry_points.txt 2024-04-04T20:21:37,473 writing requirements to figeno.egg-info/requires.txt 2024-04-04T20:21:37,474 writing top-level names to figeno.egg-info/top_level.txt 2024-04-04T20:21:37,486 reading manifest file 'figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:37,489 reading manifest template 'MANIFEST.in' 2024-04-04T20:21:37,502 adding license file 'LICENSE' 2024-04-04T20:21:37,505 writing manifest file 'figeno.egg-info/SOURCES.txt' 2024-04-04T20:21:37,509 /tmp/pip-build-env-mjr_7vpo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build' is absent from the `packages` configuration. 2024-04-04T20:21:37,509 !! 2024-04-04T20:21:37,511 ******************************************************************************** 2024-04-04T20:21:37,511 ############################ 2024-04-04T20:21:37,512 # Package would be ignored # 2024-04-04T20:21:37,513 ############################ 2024-04-04T20:21:37,513 Python recognizes 'figeno.gui.build' as an importable package[^1], 2024-04-04T20:21:37,514 but it is absent from setuptools' `packages` configuration. 2024-04-04T20:21:37,515 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-04T20:21:37,515 package, please make sure that 'figeno.gui.build' is explicitly added 2024-04-04T20:21:37,516 to the `packages` configuration field. 2024-04-04T20:21:37,517 Alternatively, you can also rely on setuptools' discovery methods 2024-04-04T20:21:37,517 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-04T20:21:37,518 instead of `find_packages(...)`/`find:`). 2024-04-04T20:21:37,519 You can read more about "package discovery" on setuptools documentation page: 2024-04-04T20:21:37,521 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-04T20:21:37,523 If you don't want 'figeno.gui.build' to be distributed and are 2024-04-04T20:21:37,523 already explicitly excluding 'figeno.gui.build' via 2024-04-04T20:21:37,530 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-04T20:21:37,531 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-04T20:21:37,532 combination with a more fine grained `package-data` configuration. 2024-04-04T20:21:37,533 You can read more about "package data files" on setuptools documentation page: 2024-04-04T20:21:37,534 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-04T20:21:37,536 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-04T20:21:37,536 even if it does not contain any `.py` files. 2024-04-04T20:21:37,537 On the other hand, currently there is no concept of package data 2024-04-04T20:21:37,538 directory, all directories are treated like packages. 2024-04-04T20:21:37,538 ******************************************************************************** 2024-04-04T20:21:37,540 !! 2024-04-04T20:21:37,540 check.warn(importable) 2024-04-04T20:21:37,541 /tmp/pip-build-env-mjr_7vpo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.css' is absent from the `packages` configuration. 2024-04-04T20:21:37,542 !! 2024-04-04T20:21:37,543 ******************************************************************************** 2024-04-04T20:21:37,544 ############################ 2024-04-04T20:21:37,545 # Package would be ignored # 2024-04-04T20:21:37,549 ############################ 2024-04-04T20:21:37,560 Python recognizes 'figeno.gui.build.static.css' as an importable package[^1], 2024-04-04T20:21:37,591 but it is absent from setuptools' `packages` configuration. 2024-04-04T20:21:37,631 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-04T20:21:37,632 package, please make sure that 'figeno.gui.build.static.css' is explicitly added 2024-04-04T20:21:37,634 to the `packages` configuration field. 2024-04-04T20:21:37,635 Alternatively, you can also rely on setuptools' discovery methods 2024-04-04T20:21:37,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-04T20:21:37,636 instead of `find_packages(...)`/`find:`). 2024-04-04T20:21:37,637 You can read more about "package discovery" on setuptools documentation page: 2024-04-04T20:21:37,638 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-04T20:21:37,640 If you don't want 'figeno.gui.build.static.css' to be distributed and are 2024-04-04T20:21:37,641 already explicitly excluding 'figeno.gui.build.static.css' via 2024-04-04T20:21:37,641 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-04T20:21:37,642 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-04T20:21:37,642 combination with a more fine grained `package-data` configuration. 2024-04-04T20:21:37,643 You can read more about "package data files" on setuptools documentation page: 2024-04-04T20:21:37,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-04T20:21:37,652 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-04T20:21:37,653 even if it does not contain any `.py` files. 2024-04-04T20:21:37,653 On the other hand, currently there is no concept of package data 2024-04-04T20:21:37,654 directory, all directories are treated like packages. 2024-04-04T20:21:37,654 ******************************************************************************** 2024-04-04T20:21:37,655 !! 2024-04-04T20:21:37,656 check.warn(importable) 2024-04-04T20:21:37,656 /tmp/pip-build-env-mjr_7vpo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.js' is absent from the `packages` configuration. 2024-04-04T20:21:37,657 !! 2024-04-04T20:21:37,658 ******************************************************************************** 2024-04-04T20:21:37,659 ############################ 2024-04-04T20:21:37,660 # Package would be ignored # 2024-04-04T20:21:37,660 ############################ 2024-04-04T20:21:37,661 Python recognizes 'figeno.gui.build.static.js' as an importable package[^1], 2024-04-04T20:21:37,662 but it is absent from setuptools' `packages` configuration. 2024-04-04T20:21:37,663 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-04T20:21:37,663 package, please make sure that 'figeno.gui.build.static.js' is explicitly added 2024-04-04T20:21:37,664 to the `packages` configuration field. 2024-04-04T20:21:37,665 Alternatively, you can also rely on setuptools' discovery methods 2024-04-04T20:21:37,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-04T20:21:37,667 instead of `find_packages(...)`/`find:`). 2024-04-04T20:21:37,668 You can read more about "package discovery" on setuptools documentation page: 2024-04-04T20:21:37,669 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-04T20:21:37,670 If you don't want 'figeno.gui.build.static.js' to be distributed and are 2024-04-04T20:21:37,671 already explicitly excluding 'figeno.gui.build.static.js' via 2024-04-04T20:21:37,671 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-04T20:21:37,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-04T20:21:37,673 combination with a more fine grained `package-data` configuration. 2024-04-04T20:21:37,675 You can read more about "package data files" on setuptools documentation page: 2024-04-04T20:21:37,684 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-04T20:21:37,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-04T20:21:37,754 even if it does not contain any `.py` files. 2024-04-04T20:21:37,771 On the other hand, currently there is no concept of package data 2024-04-04T20:21:37,788 directory, all directories are treated like packages. 2024-04-04T20:21:37,792 ******************************************************************************** 2024-04-04T20:21:37,793 !! 2024-04-04T20:21:37,793 check.warn(importable) 2024-04-04T20:21:37,794 /tmp/pip-build-env-mjr_7vpo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'figeno.gui.build.static.media' is absent from the `packages` configuration. 2024-04-04T20:21:37,794 !! 2024-04-04T20:21:37,795 ******************************************************************************** 2024-04-04T20:21:37,795 ############################ 2024-04-04T20:21:37,796 # Package would be ignored # 2024-04-04T20:21:37,796 ############################ 2024-04-04T20:21:37,797 Python recognizes 'figeno.gui.build.static.media' as an importable package[^1], 2024-04-04T20:21:37,797 but it is absent from setuptools' `packages` configuration. 2024-04-04T20:21:37,798 This leads to an ambiguous overall configuration. If you want to distribute this 2024-04-04T20:21:37,798 package, please make sure that 'figeno.gui.build.static.media' is explicitly added 2024-04-04T20:21:37,799 to the `packages` configuration field. 2024-04-04T20:21:37,800 Alternatively, you can also rely on setuptools' discovery methods 2024-04-04T20:21:37,800 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-04-04T20:21:37,801 instead of `find_packages(...)`/`find:`). 2024-04-04T20:21:37,801 You can read more about "package discovery" on setuptools documentation page: 2024-04-04T20:21:37,802 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-04-04T20:21:37,803 If you don't want 'figeno.gui.build.static.media' to be distributed and are 2024-04-04T20:21:37,804 already explicitly excluding 'figeno.gui.build.static.media' via 2024-04-04T20:21:37,804 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-04-04T20:21:37,805 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-04-04T20:21:37,805 combination with a more fine grained `package-data` configuration. 2024-04-04T20:21:37,806 You can read more about "package data files" on setuptools documentation page: 2024-04-04T20:21:37,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-04-04T20:21:37,808 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-04-04T20:21:37,809 even if it does not contain any `.py` files. 2024-04-04T20:21:37,809 On the other hand, currently there is no concept of package data 2024-04-04T20:21:37,810 directory, all directories are treated like packages. 2024-04-04T20:21:37,810 ******************************************************************************** 2024-04-04T20:21:37,812 !! 2024-04-04T20:21:37,812 check.warn(importable) 2024-04-04T20:21:37,813 copying figeno/data/hg19_chrarms.txt -> build/lib/figeno/data 2024-04-04T20:21:37,813 copying figeno/data/hg19_cytobands.tsv -> build/lib/figeno/data 2024-04-04T20:21:37,814 copying figeno/data/hg19_genes.txt.gz -> build/lib/figeno/data 2024-04-04T20:21:37,814 copying figeno/data/hg38_chrarms.txt -> build/lib/figeno/data 2024-04-04T20:21:37,814 copying figeno/data/hg38_cytobands.tsv -> build/lib/figeno/data 2024-04-04T20:21:37,815 copying figeno/data/hg38_genes.txt.gz -> build/lib/figeno/data 2024-04-04T20:21:37,816 creating build/lib/figeno/gui/build 2024-04-04T20:21:37,816 copying figeno/gui/build/asset-manifest.json -> build/lib/figeno/gui/build 2024-04-04T20:21:37,817 copying figeno/gui/build/figeno_icon.png -> build/lib/figeno/gui/build 2024-04-04T20:21:37,817 copying figeno/gui/build/index.html -> build/lib/figeno/gui/build 2024-04-04T20:21:37,818 copying figeno/gui/build/manifest.json -> build/lib/figeno/gui/build 2024-04-04T20:21:37,818 creating build/lib/figeno/gui/build/static 2024-04-04T20:21:37,819 creating build/lib/figeno/gui/build/static/css 2024-04-04T20:21:37,819 copying figeno/gui/build/static/css/main.a05bb635.css -> build/lib/figeno/gui/build/static/css 2024-04-04T20:21:37,820 copying figeno/gui/build/static/css/main.a05bb635.css.map -> build/lib/figeno/gui/build/static/css 2024-04-04T20:21:37,820 creating build/lib/figeno/gui/build/static/js 2024-04-04T20:21:37,821 copying figeno/gui/build/static/js/main.65b2eefa.js -> build/lib/figeno/gui/build/static/js 2024-04-04T20:21:37,826 copying figeno/gui/build/static/js/main.65b2eefa.js.LICENSE.txt -> build/lib/figeno/gui/build/static/js 2024-04-04T20:21:37,828 copying figeno/gui/build/static/js/main.65b2eefa.js.map -> build/lib/figeno/gui/build/static/js 2024-04-04T20:21:37,850 creating build/lib/figeno/gui/build/static/media 2024-04-04T20:21:37,851 copying figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/lib/figeno/gui/build/static/media 2024-04-04T20:21:37,861 copying figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/lib/figeno/gui/build/static/media 2024-04-04T20:21:37,864 copying figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/lib/figeno/gui/build/static/media 2024-04-04T20:21:37,871 copying figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/lib/figeno/gui/build/static/media 2024-04-04T20:21:37,876 copying figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/lib/figeno/gui/build/static/media 2024-04-04T20:21:37,963 installing to build/bdist.linux-armv7l/wheel 2024-04-04T20:21:37,963 running install 2024-04-04T20:21:37,987 running install_lib 2024-04-04T20:21:37,991 creating build/bdist.linux-armv7l 2024-04-04T20:21:37,992 creating build/bdist.linux-armv7l/wheel 2024-04-04T20:21:37,993 creating build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:37,994 copying build/lib/figeno/track_sv.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:37,997 copying build/lib/figeno/__init__.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,000 creating build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,001 copying build/lib/figeno/data/hg38_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,003 copying build/lib/figeno/data/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,004 copying build/lib/figeno/data/hg38_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,007 copying build/lib/figeno/data/hg19_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,143 copying build/lib/figeno/data/hg38_genes.txt.gz -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,291 copying build/lib/figeno/data/hg19_chrarms.txt -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,293 copying build/lib/figeno/data/hg19_cytobands.tsv -> build/bdist.linux-armv7l/wheel/figeno/data 2024-04-04T20:21:38,297 copying build/lib/figeno/track_bigwig.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,300 copying build/lib/figeno/track_hic.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,303 copying build/lib/figeno/figeno.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,306 copying build/lib/figeno/genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,310 creating build/bdist.linux-armv7l/wheel/figeno/cli 2024-04-04T20:21:38,311 copying build/lib/figeno/cli/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-04-04T20:21:38,314 copying build/lib/figeno/cli/gui.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-04-04T20:21:38,316 copying build/lib/figeno/cli/init.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-04-04T20:21:38,320 copying build/lib/figeno/cli/make.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-04-04T20:21:38,323 copying build/lib/figeno/cli/cli.py -> build/bdist.linux-armv7l/wheel/figeno/cli 2024-04-04T20:21:38,325 copying build/lib/figeno/track_basemodfreq.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,329 copying build/lib/figeno/track_genes.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,332 copying build/lib/figeno/track_chr.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,335 copying build/lib/figeno/track_ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,338 copying build/lib/figeno/ase.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,341 creating build/bdist.linux-armv7l/wheel/figeno/gui 2024-04-04T20:21:38,342 creating build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-04-04T20:21:38,343 copying build/lib/figeno/gui/build/index.html -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-04-04T20:21:38,346 copying build/lib/figeno/gui/build/asset-manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-04-04T20:21:38,349 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static 2024-04-04T20:21:38,350 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-04-04T20:21:38,352 copying build/lib/figeno/gui/build/static/js/main.65b2eefa.js -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-04-04T20:21:38,362 copying build/lib/figeno/gui/build/static/js/main.65b2eefa.js.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-04-04T20:21:38,385 copying build/lib/figeno/gui/build/static/js/main.65b2eefa.js.LICENSE.txt -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/js 2024-04-04T20:21:38,388 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-04-04T20:21:38,389 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css.map -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-04-04T20:21:38,392 copying build/lib/figeno/gui/build/static/css/main.a05bb635.css -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/css 2024-04-04T20:21:38,396 creating build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-04-04T20:21:38,397 copying build/lib/figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-04-04T20:21:38,406 copying build/lib/figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-04-04T20:21:38,410 copying build/lib/figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-04-04T20:21:38,478 copying build/lib/figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-04-04T20:21:38,486 copying build/lib/figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build/static/media 2024-04-04T20:21:38,493 copying build/lib/figeno/gui/build/figeno_icon.png -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-04-04T20:21:38,496 copying build/lib/figeno/gui/build/manifest.json -> build/bdist.linux-armv7l/wheel/figeno/gui/build 2024-04-04T20:21:38,498 copying build/lib/figeno/gui/__init__.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-04-04T20:21:38,500 copying build/lib/figeno/gui/gui_browser.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-04-04T20:21:38,502 copying build/lib/figeno/gui/gui_webview.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-04-04T20:21:38,505 copying build/lib/figeno/gui/gui_server.py -> build/bdist.linux-armv7l/wheel/figeno/gui 2024-04-04T20:21:38,507 copying build/lib/figeno/bam.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,511 copying build/lib/figeno/track_alignments.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,515 copying build/lib/figeno/track_bed.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,517 copying build/lib/figeno/vcf.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,519 copying build/lib/figeno/track_coverage.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,522 copying build/lib/figeno/utils.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,525 copying build/lib/figeno/track_copynumber.py -> build/bdist.linux-armv7l/wheel/figeno 2024-04-04T20:21:38,528 running install_egg_info 2024-04-04T20:21:38,533 Copying figeno.egg-info to build/bdist.linux-armv7l/wheel/figeno-1.0.3-py3.11.egg-info 2024-04-04T20:21:38,548 running install_scripts 2024-04-04T20:21:38,571 creating build/bdist.linux-armv7l/wheel/figeno-1.0.3.dist-info/WHEEL 2024-04-04T20:21:38,574 creating '/tmp/pip-wheel-xlg96c2k/.tmp-xjjt2ozv/figeno-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-04-04T20:21:38,576 adding 'figeno/__init__.py' 2024-04-04T20:21:38,577 adding 'figeno/ase.py' 2024-04-04T20:21:38,580 adding 'figeno/bam.py' 2024-04-04T20:21:38,583 adding 'figeno/figeno.py' 2024-04-04T20:21:38,585 adding 'figeno/genes.py' 2024-04-04T20:21:38,588 adding 'figeno/track_alignments.py' 2024-04-04T20:21:38,591 adding 'figeno/track_ase.py' 2024-04-04T20:21:38,593 adding 'figeno/track_basemodfreq.py' 2024-04-04T20:21:38,594 adding 'figeno/track_bed.py' 2024-04-04T20:21:38,596 adding 'figeno/track_bigwig.py' 2024-04-04T20:21:38,598 adding 'figeno/track_chr.py' 2024-04-04T20:21:38,601 adding 'figeno/track_copynumber.py' 2024-04-04T20:21:38,603 adding 'figeno/track_coverage.py' 2024-04-04T20:21:38,605 adding 'figeno/track_genes.py' 2024-04-04T20:21:38,607 adding 'figeno/track_hic.py' 2024-04-04T20:21:38,609 adding 'figeno/track_sv.py' 2024-04-04T20:21:38,611 adding 'figeno/utils.py' 2024-04-04T20:21:38,612 adding 'figeno/vcf.py' 2024-04-04T20:21:38,614 adding 'figeno/cli/__init__.py' 2024-04-04T20:21:38,615 adding 'figeno/cli/cli.py' 2024-04-04T20:21:38,616 adding 'figeno/cli/gui.py' 2024-04-04T20:21:38,618 adding 'figeno/cli/init.py' 2024-04-04T20:21:38,619 adding 'figeno/cli/make.py' 2024-04-04T20:21:38,621 adding 'figeno/data/__init__.py' 2024-04-04T20:21:38,622 adding 'figeno/data/hg19_chrarms.txt' 2024-04-04T20:21:38,626 adding 'figeno/data/hg19_cytobands.tsv' 2024-04-04T20:21:39,117 adding 'figeno/data/hg19_genes.txt.gz' 2024-04-04T20:21:39,146 adding 'figeno/data/hg38_chrarms.txt' 2024-04-04T20:21:39,153 adding 'figeno/data/hg38_cytobands.tsv' 2024-04-04T20:21:39,980 adding 'figeno/data/hg38_genes.txt.gz' 2024-04-04T20:21:40,027 adding 'figeno/gui/__init__.py' 2024-04-04T20:21:40,029 adding 'figeno/gui/gui_browser.py' 2024-04-04T20:21:40,030 adding 'figeno/gui/gui_server.py' 2024-04-04T20:21:40,032 adding 'figeno/gui/gui_webview.py' 2024-04-04T20:21:40,034 adding 'figeno/gui/build/asset-manifest.json' 2024-04-04T20:21:40,036 adding 'figeno/gui/build/figeno_icon.png' 2024-04-04T20:21:40,037 adding 'figeno/gui/build/index.html' 2024-04-04T20:21:40,038 adding 'figeno/gui/build/manifest.json' 2024-04-04T20:21:40,041 adding 'figeno/gui/build/static/css/main.a05bb635.css' 2024-04-04T20:21:40,043 adding 'figeno/gui/build/static/css/main.a05bb635.css.map' 2024-04-04T20:21:40,079 adding 'figeno/gui/build/static/js/main.65b2eefa.js' 2024-04-04T20:21:40,082 adding 'figeno/gui/build/static/js/main.65b2eefa.js.LICENSE.txt' 2024-04-04T20:21:40,224 adding 'figeno/gui/build/static/js/main.65b2eefa.js.map' 2024-04-04T20:21:40,261 adding 'figeno/gui/build/static/media/template_asm.91b3385b7aa2b45aa2ec.png' 2024-04-04T20:21:40,268 adding 'figeno/gui/build/static/media/template_bigwig.09eec339ebda266768bb.png' 2024-04-04T20:21:40,297 adding 'figeno/gui/build/static/media/template_hic.2c342ae1b7d7dc4bb798.png' 2024-04-04T20:21:40,317 adding 'figeno/gui/build/static/media/template_wgs_chr.dfcb60a7ecd22760e621.png' 2024-04-04T20:21:40,549 adding 'figeno/gui/build/static/media/template_wgs_circos.d596ca0ed6e640cdb5c0.png' 2024-04-04T20:21:40,566 adding 'figeno-1.0.3.dist-info/LICENSE' 2024-04-04T20:21:40,567 adding 'figeno-1.0.3.dist-info/METADATA' 2024-04-04T20:21:40,568 adding 'figeno-1.0.3.dist-info/WHEEL' 2024-04-04T20:21:40,569 adding 'figeno-1.0.3.dist-info/entry_points.txt' 2024-04-04T20:21:40,570 adding 'figeno-1.0.3.dist-info/top_level.txt' 2024-04-04T20:21:40,571 adding 'figeno-1.0.3.dist-info/RECORD' 2024-04-04T20:21:40,856 removing build/bdist.linux-armv7l/wheel 2024-04-04T20:21:40,995 Building wheel for figeno (pyproject.toml): finished with status 'done' 2024-04-04T20:21:41,277 Created wheel for figeno: filename=figeno-1.0.3-py3-none-any.whl size=14362604 sha256=5773ff7e5bd2df623ca137d70f5bd4fae7c290ff55a2691c5ae817ffc677a95d 2024-04-04T20:21:41,279 Stored in directory: /tmp/pip-ephem-wheel-cache-wg68va8_/wheels/d8/f4/57/7bd18129abf9b483c381fe158af4f7811284ac758fa9603829 2024-04-04T20:21:41,296 Successfully built figeno 2024-04-04T20:21:41,931 Removed build tracker: '/tmp/pip-build-tracker-_4z5091y'